diff --git a/communities/microgalaxy/lab/CONTRIBUTORS b/communities/microgalaxy/lab/CONTRIBUTORS index f1d71278..f26526af 100644 --- a/communities/microgalaxy/lab/CONTRIBUTORS +++ b/communities/microgalaxy/lab/CONTRIBUTORS @@ -1,3 +1,4 @@ # If GitHub username, name and avatar will be fetched and displayed bebatut -zierep \ No newline at end of file +zierep +EngyNasr \ No newline at end of file diff --git a/communities/microgalaxy/lab/base.yml b/communities/microgalaxy/lab/base.yml index f48401be..befaabe6 100644 --- a/communities/microgalaxy/lab/base.yml +++ b/communities/microgalaxy/lab/base.yml @@ -7,37 +7,35 @@ # To make the content more generic and reusable across sites # These will be rendered like "Welcome to the Galaxy {{ site_name }} {{ lab_name }}!" -site_name: Australia +site_name: European lab_name: microGalaxy Lab analysis_name: microGalaxy -nationality: Australian +nationality: Europeam # Used for rendering tool/workflow links. Trailing '/' will be removed. -galaxy_base_url: https://singlecell.usegalaxy.org -subdomain: singlecell -root_domain: usegalaxy.org +galaxy_base_url: https://microgalaxy.usegalaxy.eu +subdomain: microGalaxy +root_domain: usegalaxy.eu # This will enable a feedback form on the webpage: # feedback_email: help@mygalaxy.org support_url: https://help.galaxyproject.org -# quota_request_url: https://help.galaxyproject.org +quota_request_url: https://help.galaxyproject.org data_policy_url: https://usegalaxy.org/static/terms.html terms_url: https://usegalaxy.org/static/terms.html help_links: - title: General Galaxy support url: https://galaxyproject.org/support/ - - title: Single Cell help forum - url: https://help.galaxyproject.org/tag/single-cell + - title: microGalaxy help forum + url: https://help.galaxyproject.org/tag/microGalaxy - title: General Galaxy help forum url: https://help.galaxyproject.org - title: Galaxy Training Network Slack workspace url: https://join.slack.com/t/gtnsmrgsbord/shared_invite/zt-2llyx6p8j-LmpEIsJu0t4MQkBctkN8qg - - title: Single cell Slack channel (#single-cell-users) - url: https://gtnsmrgsbord.slack.com/archives/C06PBRR40D7 - - title: Single cell user community chat room (Same channel but using Matrix/Element) - url: https://matrix.to/#/#Galaxy-Training-Network_galaxy-single-cell:gitter.im + - title: microGalaxy user community chat room (Same channel but using Matrix/Element) + url: https://matrix.to/#/#galaxyproject_microGalaxy:gitter.im - title: Galaxy Training Community chat url: https://matrix.to/#/#Galaxy-Training-Network_Lobby:gitter.im - title: Usegalaxy.org chat @@ -49,7 +47,7 @@ conclusion_extra_md: "" # ----------------------------------------------------------------------------- # Custom content relative to this file URL -header_logo: static/logo_single_cell.svg +header_logo: static/microGalaxy-logo.png custom_css: static/custom.css intro_md: templates/intro.html conclusion_md: templates/conclusion.html @@ -61,9 +59,12 @@ footer_md: templates/footer.html # 1. Relative to this file URL # 2. Full URL to fetch globally centralized content sections: - - sections/1_beginner.yml - - sections/3_advanced.yml - - sections/4_community.yml - - sections/5_tools.yml + - sections/1_data_import_and_preparation.yml + - sections/2_microbial_isolates.yml + - sections/3_microbiome.yml + - sections/4_tools.yml + - sections/5_workflows.yml + - sections/6_support_and_help.yml + - sections/7_community.yml # ----------------------------------------------------------------------------- diff --git a/communities/microgalaxy/lab/sections/6_support_and_help.yml b/communities/microgalaxy/lab/sections/6_support_and_help.yml index b8cf43d4..96faff79 100644 --- a/communities/microgalaxy/lab/sections/6_support_and_help.yml +++ b/communities/microgalaxy/lab/sections/6_support_and_help.yml @@ -19,16 +19,16 @@ tabs: - title_md: General Galaxy support description_md: > ... - button_link: "{{ url }}" - button_tip: .. - button_icon: .. + button_link: "{{ galaxy_base_url }}" + button_tip: + button_icon: - title_md: microGalaxy chat room description_md: > Of course! Check out the microGalaxy Matrix channel [microGalaxy Matrix](https://matrix.to/#/#galaxyproject_microGalaxy:gitter.im) - button_link: "{{ url }}" - button_tip: .. - button_icon: .. + button_link: + button_tip: + button_icon: - title_md: Can I upload sensitive data? description_md: > No, please do not upload personal or sensitive, such as human health or clinical data. Please see our @@ -51,5 +51,3 @@ tabs: Please submit a quota request if your Galaxy account reaches its data storage limit. Requests are usually provisioned quickly if you provide a reasonable use case for your request. button_md: Request button_link: "{{ quota_request_url }}" - exclude_from: - - usegalaxy.org diff --git a/communities/microgalaxy/lab/sections/7_community.yml b/communities/microgalaxy/lab/sections/7_community.yml index b1f9e8a4..17447870 100644 --- a/communities/microgalaxy/lab/sections/7_community.yml +++ b/communities/microgalaxy/lab/sections/7_community.yml @@ -22,7 +22,7 @@ tabs: button_link: "" button_md: button_tip: Visit microGalaxy - + - id: governance title: How is the Galaxy Community organised? content: diff --git a/communities/microgalaxy/lab/static/logo_single_cell.svg b/communities/microgalaxy/lab/static/logo_single_cell.svg deleted file mode 100644 index 43540c2b..00000000 --- a/communities/microgalaxy/lab/static/logo_single_cell.svg +++ /dev/null @@ -1,276 +0,0 @@ - - - - - - - - - - - - - - - - image/svg+xml - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - diff --git a/communities/microgalaxy/lab/static/microgalaxy-logo.png b/communities/microgalaxy/lab/static/microgalaxy-logo.png new file mode 100644 index 00000000..ea12683d Binary files /dev/null and b/communities/microgalaxy/lab/static/microgalaxy-logo.png differ diff --git a/communities/microgalaxy/lab/usegalaxy.eu.yml b/communities/microgalaxy/lab/usegalaxy.eu.yml index 67143644..7300a603 100644 --- a/communities/microgalaxy/lab/usegalaxy.eu.yml +++ b/communities/microgalaxy/lab/usegalaxy.eu.yml @@ -13,8 +13,8 @@ site_name: Europe nationality: European # Used for rendering tool/workflow links. Trailing '/' will be removed. -galaxy_base_url: https://singlecell.usegalaxy.eu -subdomain: singlecell +galaxy_base_url: https://microgalaxy.usegalaxy.eu +subdomain: microGalaxy root_domain: usegalaxy.eu # This will enable a feedback form on the webpage: @@ -25,14 +25,14 @@ data_policy_url: "#data-policy" terms_url: https://usegalaxy-eu.github.io/gdpr/tos.html help_links: - - title: Single Cell community help forum - url: https://help.galaxyproject.org/tag/scrna + - title: microGalaxy community help forum + url: https://usegalaxy-eu.github.io/microGalaxy - title: General Galaxy support url: https://galaxyproject.org/support/ - title: Galaxy EU help forum url: https://help.galaxyproject.org/c/usegalaxy-eu-support/6 - - title: Single cell Galaxy user community chat room - url: https://matrix.to/#/#Galaxy-Training-Network_galaxy-single-cell:gitter.im + - title: microGalaxy Galaxy user community chat room + url: https://matrix.to/#/#galaxyproject_microGalaxy:gitter.im - title: Galaxy Training Community chat url: https://matrix.to/#/#Galaxy-Training-Network_Lobby:gitter.im - title: Usegalaxy.eu chat diff --git a/communities/microgalaxy/lab/usegalaxy.org.au.yml b/communities/microgalaxy/lab/usegalaxy.org.au.yml index 0a032cc7..8cd77548 100644 --- a/communities/microgalaxy/lab/usegalaxy.org.au.yml +++ b/communities/microgalaxy/lab/usegalaxy.org.au.yml @@ -13,8 +13,8 @@ site_name: Australia nationality: Australian # Used for rendering tool/workflow links. Trailing '/' will be removed. -galaxy_base_url: https://singlecell.usegalaxy.org.au -subdomain: singlecell +galaxy_base_url: https://microgalaxy.usegalaxy.org.au +subdomain: microGalaxy root_domain: usegalaxy.org.au # This will enable a feedback form on the webpage: @@ -31,12 +31,12 @@ help_links: url: https://site.usegalaxy.org.au/request - title: General Galaxy support url: https://galaxyproject.org/support/ - - title: Single Cell community help forum - url: https://usegalaxy-eu.github.io/scrna + - title: microGalaxy community help forum + url: https://usegalaxy-eu.github.io/microGalaxy - title: General Galaxy help forum url: https://help.galaxyproject.org - - title: Single cell Galaxy user community chat room - url: https://matrix.to/#/#Galaxy-Training-Network_galaxy-single-cell:gitter.im + - title: microGalaxy Galaxy user community chat room + url: https://matrix.to/#/#galaxyproject_microGalaxy:gitter.im - title: Galaxy Training Community chat url: https://matrix.to/#/#Galaxy-Training-Network_Lobby:gitter.im - title: Usegalaxy.org chat diff --git a/communities/microgalaxy/lab/usegalaxy.org.au/templates/footer.html b/communities/microgalaxy/lab/usegalaxy.org.au/templates/footer.html index fa4d580e..1935fba9 100644 --- a/communities/microgalaxy/lab/usegalaxy.org.au/templates/footer.html +++ b/communities/microgalaxy/lab/usegalaxy.org.au/templates/footer.html @@ -116,4 +116,4 @@
CONNECT
- + \ No newline at end of file diff --git a/communities/microgalaxy/lab/usegalaxy.org.yml b/communities/microgalaxy/lab/usegalaxy.org.yml index 63934752..d04ea4fd 100644 --- a/communities/microgalaxy/lab/usegalaxy.org.yml +++ b/communities/microgalaxy/lab/usegalaxy.org.yml @@ -13,22 +13,22 @@ site_name: "" # ? nationality: "" # Used for rendering tool/workflow links. Trailing '/' will be removed. -galaxy_base_url: https://singlecell.usegalaxy.org -subdomain: singlecell +galaxy_base_url: https://microGalaxy.usegalaxy.org +subdomain: microGalaxy root_domain: usegalaxy.org # This will enable a feedback form on the webpage: # feedback_email: help@mygalaxy.org help_links: - - title: Single Cell community help forum - url: https://usegalaxy-eu.github.io/scrna + - title: microGalaxy community help forum + url: https://usegalaxy-eu.github.io/microGalaxy - title: General Galaxy support url: https://galaxyproject.org/support/ - title: General Galaxy help forum url: https://help.galaxyproject.org - - title: Single cell Galaxy user community chat room - url: https://matrix.to/#/#Galaxy-Training-Network_galaxy-single-cell:gitter.im + - title: microGalaxy Galaxy user community chat room + url: https://matrix.to/#/#galaxyproject_microGalaxy:gitter.im - title: Galaxy Training Community chat url: https://matrix.to/#/#Galaxy-Training-Network_Lobby:gitter.im - title: Usegalaxy.org chat