diff --git a/lib/galaxy/dependencies/dev-requirements.txt b/lib/galaxy/dependencies/dev-requirements.txt index 87bf26b77bae..d2596d1322af 100644 --- a/lib/galaxy/dependencies/dev-requirements.txt +++ b/lib/galaxy/dependencies/dev-requirements.txt @@ -1,5 +1,7 @@ -aiohappyeyeballs==2.4.2 ; python_version >= "3.8" and python_version < "3.13" -aiohttp==3.10.8 ; python_version >= "3.8" and python_version < "3.13" +--extra-index-url https://wheels.galaxyproject.org/simple + +aiohappyeyeballs==2.4.3 ; python_version >= "3.8" and python_version < "3.13" +aiohttp==3.10.9 ; python_version >= "3.8" and python_version < "3.13" aiosignal==1.3.1 ; python_version >= "3.8" and python_version < "3.13" alabaster==0.7.13 ; python_version >= "3.8" and python_version < "3.13" anyio==4.5.0 ; python_version >= "3.8" and python_version < "3.13" @@ -43,7 +45,7 @@ galaxy-release-util==0.1.11 ; python_version >= "3.8" and python_version < "3.13 graylint==1.1.1 ; python_version >= "3.8" and python_version < "3.13" greenlet==3.0.3 ; python_version >= "3.8" and python_version < "3.13" h11==0.14.0 ; python_version >= "3.8" and python_version < "3.13" -httpcore==1.0.5 ; python_version >= "3.8" and python_version < "3.13" +httpcore==1.0.6 ; python_version >= "3.8" and python_version < "3.13" httpx==0.27.2 ; python_version >= "3.8" and python_version < "3.13" idna==3.10 ; python_version >= "3.8" and python_version < "3.13" imagesize==1.4.1 ; python_version >= "3.8" and python_version < "3.13" @@ -131,7 +133,7 @@ requests-toolbelt==1.0.0 ; python_version >= "3.8" and python_version < "3.13" requests==2.32.3 ; python_version >= "3.8" and python_version < "3.13" responses==0.25.3 ; python_version >= "3.8" and python_version < "3.13" rfc3986==2.0.0 ; python_version >= "3.8" and python_version < "3.13" -rich==13.8.1 ; python_version >= "3.8" and python_version < "3.13" +rich==13.9.2 ; python_version >= "3.8" and python_version < "3.13" rpds-py==0.20.0 ; python_version >= "3.9" and python_version < "3.13" ruamel-yaml-clib==0.2.8 ; platform_python_implementation == "CPython" and python_version < "3.13" and python_version >= "3.8" ruamel-yaml==0.18.6 ; python_version >= "3.8" and python_version < "3.13" @@ -165,7 +167,7 @@ testfixtures==8.3.0 ; python_version >= "3.8" and python_version < "3.13" text-unidecode==1.3 ; python_version >= "3.8" and python_version < "3.13" tinydb==4.8.0 ; python_version >= "3.8" and python_version < "3.13" toml==0.10.2 ; python_version >= "3.8" and python_version < "3.13" -tomli==2.0.1 ; python_version >= "3.8" and python_full_version <= "3.11.0a6" +tomli==2.0.2 ; python_version >= "3.8" and python_full_version <= "3.11.0a6" trio-websocket==0.11.1 ; python_version >= "3.8" and python_version < "3.13" trio==0.26.2 ; python_version >= "3.8" and python_version < "3.13" tuspy==1.0.3 ; python_version >= "3.8" and python_version < "3.13" diff --git a/lib/galaxy/dependencies/pinned-lint-requirements.txt b/lib/galaxy/dependencies/pinned-lint-requirements.txt index 200f4e9ea889..37feaac86fe3 100644 --- a/lib/galaxy/dependencies/pinned-lint-requirements.txt +++ b/lib/galaxy/dependencies/pinned-lint-requirements.txt @@ -4,4 +4,4 @@ flake8-bugbear==24.8.19 mccabe==0.7.0 pycodestyle==2.12.1 pyflakes==3.2.0 -ruff==0.6.8 +ruff==0.6.9 diff --git a/lib/galaxy/dependencies/pinned-requirements.txt b/lib/galaxy/dependencies/pinned-requirements.txt index 35fae8ef16d7..3a004d0918eb 100644 --- a/lib/galaxy/dependencies/pinned-requirements.txt +++ b/lib/galaxy/dependencies/pinned-requirements.txt @@ -5,8 +5,8 @@ adal==1.2.7 ; python_version >= "3.8" and python_version < "3.13" aiobotocore==2.15.1 ; python_version >= "3.8" and python_version < "3.13" aiodataloader==0.4.0 ; python_version >= "3.8" and python_version < "3.13" aiofiles==24.1.0 ; python_version >= "3.8" and python_version < "3.13" -aiohappyeyeballs==2.4.2 ; python_version >= "3.8" and python_version < "3.13" -aiohttp==3.10.8 ; python_version >= "3.8" and python_version < "3.13" +aiohappyeyeballs==2.4.3 ; python_version >= "3.8" and python_version < "3.13" +aiohttp==3.10.9 ; python_version >= "3.8" and python_version < "3.13" aioitertools==0.12.0 ; python_version >= "3.8" and python_version < "3.13" aiosignal==1.3.1 ; python_version >= "3.8" and python_version < "3.13" alembic==1.13.3 ; python_version >= "3.8" and python_version < "3.13" @@ -134,7 +134,7 @@ prov==1.5.1 ; python_version >= "3.8" and python_version < "3.13" psutil==6.0.0 ; python_version >= "3.8" and python_version < "3.13" pulsar-galaxy-lib==0.15.6 ; python_version >= "3.8" and python_version < "3.13" pycparser==2.22 ; python_version >= "3.8" and python_version < "3.13" -pycryptodome==3.20.0 ; python_version >= "3.8" and python_version < "3.13" +pycryptodome==3.21.0 ; python_version >= "3.8" and python_version < "3.13" pydantic-core==2.23.4 ; python_version >= "3.8" and python_version < "3.13" pydantic-tes==0.1.5 ; python_version >= "3.8" and python_version < "3.13" pydantic==2.9.2 ; python_version >= "3.8" and python_version < "3.13" @@ -167,7 +167,7 @@ requests-oauthlib==2.0.0 ; python_version >= "3.8" and python_version < "3.13" requests-toolbelt==1.0.0 ; python_version >= "3.8" and python_version < "3.13" requests-unixsocket==0.3.0 ; python_version >= "3.8" and python_version < "3.13" requests==2.32.3 ; python_version >= "3.8" and python_version < "3.13" -rich==13.8.1 ; python_version >= "3.8" and python_version < "3.13" +rich==13.9.2 ; python_version >= "3.8" and python_version < "3.13" rocrate==0.11.0 ; python_version >= "3.8" and python_version < "3.13" routes==2.5.1 ; python_version >= "3.8" and python_version < "3.13" rpds-py==0.20.0 ; python_version >= "3.8" and python_version < "3.13" @@ -194,7 +194,7 @@ svgwrite==1.4.3 ; python_version >= "3.8" and python_version < "3.13" tenacity==9.0.0 ; python_version >= "3.8" and python_version < "3.13" tifffile==2023.7.10 ; python_version >= "3.8" and python_version < "3.13" tinydb==4.8.0 ; python_version >= "3.8" and python_version < "3.13" -tomli==2.0.1 ; python_version >= "3.8" and python_version < "3.11" +tomli==2.0.2 ; python_version >= "3.8" and python_version < "3.11" tornado==6.4.1 ; python_version >= "3.8" and python_version < "3.13" tqdm==4.66.5 ; python_version >= "3.8" and python_version < "3.13" tuspy==1.0.3 ; python_version >= "3.8" and python_version < "3.13" diff --git a/lib/galaxy/dependencies/pinned-typecheck-requirements.txt b/lib/galaxy/dependencies/pinned-typecheck-requirements.txt index 44dc87b82b94..b83712cde9d6 100644 --- a/lib/galaxy/dependencies/pinned-typecheck-requirements.txt +++ b/lib/galaxy/dependencies/pinned-typecheck-requirements.txt @@ -1,26 +1,28 @@ +--extra-index-url https://wheels.galaxyproject.org/simple + annotated-types==0.7.0 ; python_version >= "3.8" and python_version < "3.13" -boto3-stubs[s3]==1.35.29 ; python_version >= "3.8" and python_version < "3.13" -botocore-stubs==1.35.29 ; python_version >= "3.8" and python_version < "3.13" +boto3-stubs[s3]==1.35.34 ; python_version >= "3.8" and python_version < "3.13" +botocore-stubs==1.35.34 ; python_version >= "3.8" and python_version < "3.13" cffi==1.17.1 ; python_version >= "3.8" and python_version < "3.13" and platform_python_implementation != "PyPy" cryptography==43.0.1 ; python_version >= "3.8" and python_version < "3.13" lxml-stubs==0.5.1 ; python_version >= "3.8" and python_version < "3.13" -mypy-boto3-s3==1.35.22 ; python_version >= "3.8" and python_version < "3.13" +mypy-boto3-s3==1.35.32 ; python_version >= "3.8" and python_version < "3.13" mypy-extensions==1.0.0 ; python_version >= "3.8" and python_version < "3.13" mypy==1.11.2 ; python_version >= "3.8" and python_version < "3.13" pycparser==2.22 ; python_version >= "3.8" and python_version < "3.13" and platform_python_implementation != "PyPy" pydantic-core==2.23.4 ; python_version >= "3.8" and python_version < "3.13" pydantic==2.9.2 ; python_version >= "3.8" and python_version < "3.13" -tomli==2.0.1 ; python_version >= "3.8" and python_version < "3.11" -types-awscrt==0.21.5 ; python_version >= "3.8" and python_version < "3.13" +tomli==2.0.2 ; python_version >= "3.8" and python_version < "3.11" +types-awscrt==0.22.0 ; python_version >= "3.8" and python_version < "3.13" types-bleach==6.1.0.20240331 ; python_version >= "3.8" and python_version < "3.13" types-boto==2.49.18.20240806 ; python_version >= "3.8" and python_version < "3.13" types-contextvars==2.4.7.3 ; python_version >= "3.8" and python_version < "3.13" types-dataclasses==0.6.6 ; python_version >= "3.8" and python_version < "3.13" -types-docutils==0.21.0.20240907 ; python_version >= "3.8" and python_version < "3.13" +types-docutils==0.21.0.20241005 ; python_version >= "3.8" and python_version < "3.13" types-html5lib==1.1.11.20240806 ; python_version >= "3.8" and python_version < "3.13" types-markdown==3.7.0.20240822 ; python_version >= "3.8" and python_version < "3.13" types-paramiko==3.5.0.20240928 ; python_version >= "3.8" and python_version < "3.13" -types-python-dateutil==2.9.0.20240906 ; python_version >= "3.8" and python_version < "3.13" +types-python-dateutil==2.9.0.20241003 ; python_version >= "3.8" and python_version < "3.13" types-pyyaml==6.0.12.20240917 ; python_version >= "3.8" and python_version < "3.13" types-requests==2.31.0.6 ; python_version >= "3.8" and python_version < "3.13" types-s3transfer==0.10.2 ; python_version >= "3.8" and python_version < "3.13"