diff --git a/.github/workflows/mulled.yaml b/.github/workflows/mulled.yaml index 4d33cc3febd7..6d36a454d807 100644 --- a/.github/workflows/mulled.yaml +++ b/.github/workflows/mulled.yaml @@ -44,6 +44,8 @@ jobs: key: tox-cache-${{ runner.os }}-${{ steps.full-python-version.outputs.version }}-${{ hashFiles('galaxy root/requirements.txt') }}-mulled - name: Install Apptainer's singularity uses: eWaterCycle/setup-apptainer@v2 + with: + apptainer-version: 1.3.6 # https://github.com/eWaterCycle/setup-apptainer/pull/68 - name: Install tox run: pip install tox - name: Run tests diff --git a/pytest.ini b/pytest.ini index 7c1d40306310..e2e406ef82ba 100644 --- a/pytest.ini +++ b/pytest.ini @@ -1,5 +1,5 @@ [pytest] -addopts = --doctest-continue-on-failure --verbosity=1 +addopts = --doctest-continue-on-failure --verbosity=1 --showlocals asyncio_mode = auto log_level = DEBUG # Install pytest-memray and set memray to true here to enable memory profiling of tests diff --git a/test/unit/tool_util/mulled/test_mulled_update_singularity_containers.py b/test/unit/tool_util/mulled/test_mulled_update_singularity_containers.py index 728757b52f31..9ec4e47b44f8 100644 --- a/test/unit/tool_util/mulled/test_mulled_update_singularity_containers.py +++ b/test/unit/tool_util/mulled/test_mulled_update_singularity_containers.py @@ -46,6 +46,6 @@ def test_singularity_container_test(tmp_path) -> None: "singularity", tmp_path, ) - assert "samtools:1.0--1" in results["passed"] - assert "pybigwig:0.3.22--py36h54a71a5_0" in results["passed"] - assert "yasm:1.3.0--0" in results["notest"] + assert "samtools:1.0--1" in results["passed"], results + assert "pybigwig:0.3.22--py36h54a71a5_0" in results["passed"], results + assert "yasm:1.3.0--0" in results["notest"], results