diff --git a/.github/workflows/client-ci.yml b/.github/workflows/client-ci.yml new file mode 100644 index 00000000..79fbc19a --- /dev/null +++ b/.github/workflows/client-ci.yml @@ -0,0 +1,36 @@ +name: Extension CI + +on: + push: + pull_request: + branches: [master] + workflow_dispatch: + +jobs: + build: + strategy: + matrix: + os: [macos-latest, ubuntu-latest, windows-latest] + runs-on: ${{ matrix.os }} + defaults: + run: + working-directory: client + + steps: + - name: Checkout + uses: actions/checkout@v3 + - name: Set up Python for local environment + uses: actions/setup-python@v2 + with: + python-version: "3.10" + - name: Install Node.js + uses: actions/setup-node@v3 + with: + node-version: 16 + - run: npm install + - name: Run integration tests + run: xvfb-run -a npm run test:e2e + if: runner.os == 'Linux' + - name: Run integration tests + run: npm run test:e2e + if: runner.os != 'Linux' diff --git a/.gitignore b/.gitignore index 81613423..b007d2f8 100644 --- a/.gitignore +++ b/.gitignore @@ -109,6 +109,7 @@ venv/ ENV/ env.bak/ venv.bak/ +glsenv # Spyder project settings .spyderproject @@ -131,6 +132,7 @@ dmypy.json # VS Code .vscode/settings.json +.vscode-test # Visual Studio .vs diff --git a/.vscode/launch.json b/.vscode/launch.json index 5b5db325..b060f417 100644 --- a/.vscode/launch.json +++ b/.vscode/launch.json @@ -41,6 +41,25 @@ "group": "GLS", "order": 3 } + }, + { + "name": "Debug e2e Tests", + "type": "extensionHost", + "request": "launch", + "runtimeExecutable": "${execPath}", + "args": [ + "--disable-extensions", + "--extensionDevelopmentPath=${workspaceFolder}", + "--extensionTestsPath=${workspaceFolder}/client/out/tests/e2e/suite/index" + ], + "outFiles": [ + "${workspaceFolder}client/out/tests/e2e/**/*.js" + ], + "preLaunchTask": { + "type": "npm", + "path": "client", + "script": "test-compile" + } } ], "compounds": [ diff --git a/.vscode/tasks.json b/.vscode/tasks.json index 84449281..27383b9d 100644 --- a/.vscode/tasks.json +++ b/.vscode/tasks.json @@ -8,6 +8,23 @@ "problemMatcher": [], "label": "npm: webpack", "detail": "webpack --mode development" + }, + { + "type": "npm", + "script": "watch", + "isBackground": true, + "group": { + "kind": "build", + "isDefault": true + }, + "presentation": { + "panel": "dedicated", + "reveal": "never" + }, + "problemMatcher": [ + "$ts-webpack-watch", + "$tslint-webpack-watch" + ] } ] } diff --git a/client/package-lock.json b/client/package-lock.json index 3e1728ac..612630c4 100644 --- a/client/package-lock.json +++ b/client/package-lock.json @@ -1,12 +1,12 @@ { "name": "galaxy-tools", - "version": "0.7.1", + "version": "0.7.3", "lockfileVersion": 2, "requires": true, "packages": { "": { "name": "galaxy-tools", - "version": "0.7.1", + "version": "0.7.3", "license": "Apache-2.0", "dependencies": { "iconv-lite": "^0.6.3", @@ -15,12 +15,16 @@ "vscode-languageclient": "^7.0.0" }, "devDependencies": { + "@types/glob": "^8.0.0", + "@types/mocha": "^9.1.1", "@types/node": 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"https://registry.npmjs.org/yargs-unparser/-/yargs-unparser-2.0.0.tgz", + "integrity": "sha512-7pRTIA9Qc1caZ0bZ6RYRGbHJthJWuakf+WmHK0rVeLkNrrGhfoabBNdue6kdINI6r4if7ocq9aD/n7xwKOdzOA==", + "dev": true, + "requires": { + "camelcase": "^6.0.0", + "decamelize": "^4.0.0", + "flat": "^5.0.2", + "is-plain-obj": "^2.1.0" + } + }, + "yocto-queue": { + "version": "0.1.0", + "resolved": "https://registry.npmjs.org/yocto-queue/-/yocto-queue-0.1.0.tgz", + "integrity": "sha512-rVksvsnNCdJ/ohGc6xgPwyN8eheCxsiLM8mxuE/t/mOVqJewPuO1miLpTHQiRgTKCLexL4MeAFVagts7HmNZ2Q==", + "dev": true } } } diff --git a/client/package.json b/client/package.json index 6c716c17..20e61b39 100644 --- a/client/package.json +++ b/client/package.json @@ -274,15 +274,22 @@ "watch": "webpack --mode development --watch", "tslint": "tslint --project tsconfig.json", "prettier": "prettier 'src/**/*.ts'", - "prettier:fix": "prettier --write 'src/**/*.ts'" + "prettier:fix": "prettier --write 'src/**/*.ts'", + "test-compile": "tsc --project . --outDir out", + "pretest:e2e": "webpack && npm run test-compile", + "test:e2e": "node ./out/tests//e2e/runTests.js" }, "devDependencies": { + "@types/glob": "^8.0.0", + "@types/mocha": "^9.1.1", "@types/node": "^17.0.13", "@types/tmp": "^0.2.3", "@types/vscode": "^1.52.0", "@typescript-eslint/eslint-plugin": "^5.10.1", "@typescript-eslint/parser": "^5.10.1", + "@vscode/test-electron": "^2.1.5", "eslint": "^8.8.0", + "mocha": "^10.0.0", "prettier": "2.5.1", "ts-loader": "^9.2.6", "typescript": "^4.5.5", diff --git a/client/src/setup.ts b/client/src/setup.ts index 3e426fa9..923184e8 100644 --- a/client/src/setup.ts +++ b/client/src/setup.ts @@ -136,6 +136,76 @@ export async function installLanguageServer(context: ExtensionContext): Promise< ); } +/** + * Simplified version of `installLanguageServer` without UI interaction. + * This is meant to be used in testing environments. + * @param installPath The path to install the local Python environment + */ +export async function silentInstallLanguageServerForTesting(installPath: string): Promise { + let venvPath = getVirtualEnvironmentPath(installPath, Constants.LS_VENV_NAME); + if (existsSync(venvPath)) { + const venvPython = getPythonFromVirtualEnvPath(venvPath); + const isInstalled = await isPythonPackageInstalled( + venvPython, + Constants.GALAXY_LS_PACKAGE, + Constants.GALAXY_LS_VERSION + ); + if (isInstalled) { + console.log(`[gls] ${Constants.GALAXY_LS_PACKAGE} already installed.`); + return Promise.resolve(venvPython); + } + } + + // Install with progress + return window.withProgress( + { + location: ProgressLocation.Window, + title: "Installing/updating Galaxy language server...", + }, + (progress): Promise => { + return new Promise(async (resolve, reject) => { + try { + if (!existsSync(venvPath)) { + console.log(`[gls] Checking Python version...`); + let python = await getPython(); + + if (python === undefined) { + const message = `Python ${Constants.REQUIRED_PYTHON_VERSION} is required in order to use the language server features.`; + throw new Error(message); + } + + console.log(`[gls] Creating virtual environment...`); + venvPath = await createVirtualEnvironment(python, Constants.LS_VENV_NAME, installPath); + } + + const venvPython = getPythonFromVirtualEnvPath(venvPath); + console.log(`[gls] Using Python from: ${venvPython}`); + + console.log(`[gls] Installing ${Constants.GALAXY_LS_PACKAGE}...`); + const isInstalled = await installPythonPackage( + venvPython, + Constants.GALAXY_LS_PACKAGE, + Constants.GALAXY_LS_VERSION + ); + + if (!isInstalled) { + const errorMessage = "There was a problem trying to install the Galaxy language server."; + removeDirectory(venvPath); + throw new Error(errorMessage); + } + + console.log(`[gls] ${Constants.GALAXY_LS_PACKAGE} installed successfully.`); + + resolve(venvPython); + } catch (err: any) { + console.error(`[gls] installLSWithProgress err: ${err}`); + reject(err); + } + }); + } + ); +} + function getPythonFromVirtualEnvPath(venvPath: string): string { return Constants.IS_WIN ? join(venvPath, "Scripts", Constants.PYTHON_WIN) diff --git a/client/tests/e2e/runTests.ts b/client/tests/e2e/runTests.ts new file mode 100644 index 00000000..fa0db7bd --- /dev/null +++ b/client/tests/e2e/runTests.ts @@ -0,0 +1,23 @@ +import * as path from "path"; + +import { runTests } from "@vscode/test-electron"; + +async function main(): Promise { + try { + // The folder containing the Extension Manifest package.json + // Passed to `--extensionDevelopmentPath` + const extensionDevelopmentPath = path.resolve(__dirname, "../../../"); + + // The path to test runner + // Passed to --extensionTestsPath + const extensionTestsPath = path.resolve(__dirname, "./suite/index"); + + // Download VS Code, unzip it and run the integration test + await runTests({ extensionDevelopmentPath, extensionTestsPath }); + } catch (err) { + console.error("Failed to run tests"); + process.exit(1); + } +} + +main(); diff --git a/client/tests/e2e/suite/extension.e2e.ts b/client/tests/e2e/suite/extension.e2e.ts new file mode 100644 index 00000000..527cd1ef --- /dev/null +++ b/client/tests/e2e/suite/extension.e2e.ts @@ -0,0 +1,85 @@ +// You can import and use all API from the 'vscode' module +import * as vscode from "vscode"; +import * as path from "path"; +import { + activateAndOpenInEditor, + getDocUri, + closeAllEditors, + assertDiagnostics, + ensureGalaxyLanguageServerInstalled, + waitForDiagnostics, +} from "./helpers"; +import * as assert from "assert"; + +suite("Extension Test Suite", () => { + suiteSetup(async () => { + const result = await ensureGalaxyLanguageServerInstalled(); + assert.ok(result); + console.log("[e2e] Suite setup completed"); + }); + teardown(closeAllEditors); + suite("Validation Tests", () => { + test("Valid tool returns empty diagnostics", async () => { + const docUri = getDocUri(path.join("test_tool_01.xml")); + await activateAndOpenInEditor(docUri); + + await waitForDiagnostics(docUri); + await assertDiagnostics(docUri, []); + }); + + test("Valid macro file returns empty diagnostics", async () => { + const docUri = getDocUri(path.join("macros_01.xml")); + await activateAndOpenInEditor(docUri); + + await waitForDiagnostics(docUri); + await assertDiagnostics(docUri, []); + }); + + test("Invalid tool should return diagnostics for required attributes 'id' and 'name'", async () => { + const docUri = getDocUri(path.join("test_invalid_tool_01.xml")); + await activateAndOpenInEditor(docUri); + + await waitForDiagnostics(docUri); + await assertDiagnostics(docUri, [ + { + message: "Element 'tool': The attribute 'id' is required but missing.", + range: new vscode.Range(new vscode.Position(0, 0), new vscode.Position(0, 0)), + severity: vscode.DiagnosticSeverity.Error, + }, + { + message: "Element 'tool': The attribute 'name' is required but missing.", + range: new vscode.Range(new vscode.Position(0, 0), new vscode.Position(0, 0)), + severity: vscode.DiagnosticSeverity.Error, + }, + ]); + }); + + test("Invalid tool document with syntax error should return diagnostic", async () => { + const docUri = getDocUri(path.join("test_syntax_error_01.xml")); + await activateAndOpenInEditor(docUri); + + await waitForDiagnostics(docUri); + await assertDiagnostics(docUri, [ + { + message: "Couldn't find end of Start Tag tool line 1, line 2, column 1", + range: new vscode.Range(new vscode.Position(1, 0), new vscode.Position(1, 1)), + severity: vscode.DiagnosticSeverity.Error, + }, + ]); + }); + + test("Invalid macro document with syntax error should return diagnostic", async () => { + const docUri = getDocUri(path.join("test_syntax_error_macro_01.xml")); + await activateAndOpenInEditor(docUri); + + await waitForDiagnostics(docUri); + await assertDiagnostics(docUri, [ + { + message: "Premature end of data in tag macros line 1, line 2, column 1", + range: new vscode.Range(new vscode.Position(1, 0), new vscode.Position(1, 1)), + severity: vscode.DiagnosticSeverity.Error, + }, + ]); + }); + }); +}); diff --git a/client/tests/e2e/suite/helpers.ts b/client/tests/e2e/suite/helpers.ts new file mode 100644 index 00000000..59c2b9c7 --- /dev/null +++ b/client/tests/e2e/suite/helpers.ts @@ -0,0 +1,96 @@ +import * as vscode from "vscode"; +import * as path from "path"; +import * as assert from "assert"; +import { silentInstallLanguageServerForTesting } from "../../../src/setup"; + +/** + * Contains the document and its corresponding editor + */ +export interface DocumentEditor { + editor: vscode.TextEditor; + document: vscode.TextDocument; +} + +export async function activate(): Promise { + const ext = vscode.extensions.getExtension("davelopez.galaxy-language-server"); + const api = ext?.isActive ? ext.exports : await ext?.activate(); + return api; +} + +export async function ensureGalaxyLanguageServerInstalled(): Promise { + const installDir = path.join(__dirname, "..", "..", "..", ".."); + const result = await silentInstallLanguageServerForTesting(installDir); + return result; +} + +export async function openDocumentInEditor(docUri: vscode.Uri): Promise { + const document = await vscode.workspace.openTextDocument(docUri); + const editor = await vscode.window.showTextDocument(document); + return { + editor, + document, + }; +} + +export async function openDocument(docUri: vscode.Uri): Promise { + const document = await vscode.workspace.openTextDocument(docUri); + + return document; +} + +export async function activateAndOpenInEditor(docUri: vscode.Uri): Promise { + await activate(); + return openDocumentInEditor(docUri); +} + +export async function sleep(ms: number): Promise { + return new Promise((resolve) => setTimeout(resolve, ms)); +} + +export async function waitForDiagnostics(docUri: vscode.Uri, timeoutInMilliseconds: number = 2000): Promise { + const waitMilliseconds = 100; + let waitTimeout = timeoutInMilliseconds; + let diagnostics = vscode.languages.getDiagnostics(docUri); + while (waitTimeout > 0 && !diagnostics.length) { + await sleep(waitMilliseconds); + waitTimeout -= waitMilliseconds; + diagnostics = vscode.languages.getDiagnostics(docUri); + } +} + +export const getDocPath = (filePath: string): string => { + return path.resolve( + __dirname, + path.join("..", "..", "..", "..", "..", "server", "galaxyls", "tests", "files", filePath) + ); +}; + +export const getDocUri = (filePath: string): vscode.Uri => { + return vscode.Uri.file(getDocPath(filePath)); +}; + +export async function assertDiagnostics(docUri: vscode.Uri, expectedDiagnostics: vscode.Diagnostic[]): Promise { + const actualDiagnostics = vscode.languages.getDiagnostics(docUri); + + assert.equal(actualDiagnostics.length, expectedDiagnostics.length); + + expectedDiagnostics.forEach((expectedDiagnostic, i) => { + const actualDiagnostic = actualDiagnostics[i]; + assert.equal(actualDiagnostic.message, expectedDiagnostic.message); + assert.deepEqual(actualDiagnostic.range, expectedDiagnostic.range); + assert.equal(actualDiagnostic.severity, expectedDiagnostic.severity); + }); +} + +/** + * Asserts that the given workflow document has no diagnostics i.e. is valid. + * @param docUri Workflow document URI + */ +export async function assertValid(docUri: vscode.Uri): Promise { + const actualDiagnostics = vscode.languages.getDiagnostics(docUri); + assert.equal(actualDiagnostics.length, 0); +} + +export function closeAllEditors(): Thenable { + return vscode.commands.executeCommand("workbench.action.closeAllEditors"); +} diff --git a/client/tests/e2e/suite/index.ts b/client/tests/e2e/suite/index.ts new file mode 100644 index 00000000..013800b2 --- /dev/null +++ b/client/tests/e2e/suite/index.ts @@ -0,0 +1,39 @@ +import * as path from "path"; +import * as Mocha from "mocha"; +import * as glob from "glob"; + +export function run(): Promise { + // Create the mocha test + const mocha = new Mocha({ + ui: "tdd", + color: true, + timeout: 60000, + inlineDiffs: true, + }); + + const testsRoot = path.resolve(__dirname, ".."); + + return new Promise((c, e) => { + glob("**/**.e2e.js", { cwd: testsRoot }, (err, files) => { + if (err) { + return e(err); + } + + // Add files to the test suite + files.forEach((f) => mocha.addFile(path.resolve(testsRoot, f))); + + try { + // Run the mocha test + mocha.run((failures) => { + if (failures > 0) { + e(new Error(`${failures} tests failed.`)); + } else { + c(); + } + }); + } catch (err) { + e(err); + } + }); + }); +} diff --git a/client/tsconfig.json b/client/tsconfig.json index 3409fba4..242e48aa 100644 --- a/client/tsconfig.json +++ b/client/tsconfig.json @@ -4,7 +4,10 @@ "module": "commonjs", "sourceMap": true, "strict": true, - "rootDir": "src", + "rootDirs": [ + "src", + "tests" + ], "outDir": "out", "lib": [ "es6" diff --git a/server/galaxyls/tests/files/macros_01.xml b/server/galaxyls/tests/files/macros_01.xml new file mode 100644 index 00000000..48d24e60 --- /dev/null +++ b/server/galaxyls/tests/files/macros_01.xml @@ -0,0 +1,6 @@ + + 0.1.0 + + + + diff --git a/server/galaxyls/tests/files/test_syntax_error_01.xml b/server/galaxyls/tests/files/test_syntax_error_01.xml new file mode 100644 index 00000000..33ab8282 --- /dev/null +++ b/server/galaxyls/tests/files/test_syntax_error_01.xml @@ -0,0 +1 @@ +unclosed diff --git a/server/galaxyls/tests/unit/sample_data.py b/server/galaxyls/tests/unit/sample_data.py index ed6caa16..ffbfee42 100644 --- a/server/galaxyls/tests/unit/sample_data.py +++ b/server/galaxyls/tests/unit/sample_data.py @@ -152,8 +152,6 @@ TEST_SYNTAX_ERROR_TOOL_01_DOCUMENT = Document("file://test_syntax_error_01.xml", "tool") -TEST_SYNTAX_ERROR_MACRO_01_DOCUMENT = Document("file://test_syntax_error_macro_01.xml", "unclosed") - TEST_TOOL_WITH_PROLOG = """ diff --git a/server/galaxyls/tests/unit/test_validation.py b/server/galaxyls/tests/unit/test_validation.py index 237412db..5e61f11b 100644 --- a/server/galaxyls/tests/unit/test_validation.py +++ b/server/galaxyls/tests/unit/test_validation.py @@ -3,12 +3,6 @@ from galaxyls.services.validation import DocumentValidator from ...services.xsd.constants import TOOL_XSD_FILE -from ...services.xsd.validation import GalaxyToolSchemaValidationService -from .sample_data import ( - TEST_MACRO_01_DOCUMENT, - TEST_SYNTAX_ERROR_MACRO_01_DOCUMENT, - TEST_SYNTAX_ERROR_TOOL_01_DOCUMENT, -) from .utils import TestUtils @@ -19,48 +13,6 @@ def xsd_schema() -> etree.XMLSchema: return schema -class TestGalaxyToolValidationServiceClass: - def test_validate_document_returns_empty_diagnostics_when_valid(self, xsd_schema: etree.XMLSchema) -> None: - service = GalaxyToolSchemaValidationService(xsd_schema) - xml_document = TestUtils.get_test_xml_document_from_file("test_tool_01.xml") - - actual = service.validate_document(xml_document) - - assert actual == [] - - def test_validate_macro_file_returns_empty_diagnostics_when_valid(self, xsd_schema: etree.XMLSchema) -> None: - service = GalaxyToolSchemaValidationService(xsd_schema) - xml_document = TestUtils.from_document_to_xml_document(TEST_MACRO_01_DOCUMENT) - - actual = service.validate_document(xml_document) - - assert actual == [] - - def test_validate_document_returns_diagnostics_when_invalid(self, xsd_schema: etree.XMLSchema) -> None: - service = GalaxyToolSchemaValidationService(xsd_schema) - xml_document = TestUtils.get_test_xml_document_from_file("test_invalid_tool_01.xml") - - actual = service.validate_document(xml_document) - - assert len(actual) > 0 - - def test_validate_document_returns_diagnostics_when_syntax_error(self, xsd_schema: etree.XMLSchema) -> None: - service = GalaxyToolSchemaValidationService(xsd_schema) - xml_document = TestUtils.from_document_to_xml_document(TEST_SYNTAX_ERROR_TOOL_01_DOCUMENT) - - actual = service.validate_document(xml_document) - - assert len(actual) == 1 - - def test_validate_macro_file_returns_diagnostics_when_syntax_error(self, xsd_schema: etree.XMLSchema) -> None: - service = GalaxyToolSchemaValidationService(xsd_schema) - xml_document = TestUtils.from_document_to_xml_document(TEST_SYNTAX_ERROR_MACRO_01_DOCUMENT) - - actual = service.validate_document(xml_document) - - assert len(actual) == 1 - - class TestDocumentValidatorClass: @pytest.mark.parametrize( "source, expected",