diff --git a/files/out/genomes.json b/files/out/genomes.json index 878a2f4..a6415e3 100644 --- a/files/out/genomes.json +++ b/files/out/genomes.json @@ -186,6 +186,17 @@ "ucscBrowserUrl": "https://genome.ucsc.edu/h/GCF_000003125.1", "vEuPathDbProject": "FungiDB" }, + { + "chromosomes": 4, + "contigs": 0, + "genomeVersionAssemblyId": "GCA_000003225.1", + "organism": "Theileria annulata strain Ankara", + "species": "Theileria annulata", + "strain": "strain Ankara", + "supercontigs": 0, + "ucscBrowserUrl": "https://genome.ucsc.edu/h/GCA_000003225.1", + "vEuPathDbProject": "PiroplasmaDB" + }, { "chromosomes": 0, "contigs": 0, @@ -351,6 +362,17 @@ "ucscBrowserUrl": "https://genome.ucsc.edu/h/GCF_000142945.1", "vEuPathDbProject": "FungiDB" }, + { + "chromosomes": 0, + "contigs": 0, + "genomeVersionAssemblyId": "GCA_000143045.1", + "organism": "Globisporangium ultimum DAOM BR144", + "species": "Globisporangium ultimum", + "strain": "DAOM BR144", + "supercontigs": 975, + "ucscBrowserUrl": "https://genome.ucsc.edu/h/GCA_000143045.1", + "vEuPathDbProject": "FungiDB" + }, { "chromosomes": 0, "contigs": 0, @@ -648,6 +670,17 @@ "ucscBrowserUrl": "https://genome.ucsc.edu/h/GCF_000149955.1", "vEuPathDbProject": "FungiDB" }, + { + "chromosomes": 14, + "contigs": 0, + "genomeVersionAssemblyId": "GCA_000150015.2", + "organism": "Toxoplasma gondii VEG", + "species": "Toxoplasma gondii", + "strain": "VEG", + "supercontigs": 1290, + "ucscBrowserUrl": "https://genome.ucsc.edu/h/GCA_000150015.2", + "vEuPathDbProject": "ToxoDB" + }, { "chromosomes": 0, "contigs": 0, @@ -1044,6 +1077,17 @@ "ucscBrowserUrl": "https://genome.ucsc.edu/h/GCF_000170995.1", "vEuPathDbProject": "FungiDB" }, + { + "chromosomes": 0, + "contigs": 0, + "genomeVersionAssemblyId": "GCA_000173235.2", + "organism": "Hyaloperonospora arabidopsidis Emoy2", + "species": "Hyaloperonospora arabidopsidis", + "strain": "Emoy2", + "supercontigs": 3044, + "ucscBrowserUrl": "https://genome.ucsc.edu/h/GCA_000173235.2", + "vEuPathDbProject": "FungiDB" + }, { "chromosomes": 0, "contigs": 0, @@ -1055,6 +1099,17 @@ "ucscBrowserUrl": "https://genome.ucsc.edu/h/GCA_000181055.3", "vEuPathDbProject": "VectorBase" }, + { + "chromosomes": 0, + "contigs": 2931, + "genomeVersionAssemblyId": "GCA_000182405.1", + "organism": "Giardia Assemblage B isolate GS", + "species": "Giardia Assemblage B", + "strain": "isolate GS", + "supercontigs": 0, + "ucscBrowserUrl": "https://genome.ucsc.edu/h/GCA_000182405.1", + "vEuPathDbProject": "GiardiaDB" + }, { "chromosomes": 0, "contigs": 0, @@ -1066,6 +1121,17 @@ "ucscBrowserUrl": "https://genome.ucsc.edu/h/GCF_000182565.1", "vEuPathDbProject": "FungiDB" }, + { + "chromosomes": 0, + "contigs": 820, + "genomeVersionAssemblyId": "GCA_000182665.1", + "organism": "Giardia Assemblage E isolate P15", + "species": "Giardia Assemblage E", + "strain": "isolate P15", + "supercontigs": 0, + "ucscBrowserUrl": "https://genome.ucsc.edu/h/GCA_000182665.1", + "vEuPathDbProject": "GiardiaDB" + }, { "chromosomes": 8, "contigs": 0, @@ -2342,6 +2408,72 @@ "ucscBrowserUrl": "https://genome.ucsc.edu/h/GCA_000385875.2", "vEuPathDbProject": "MicrosporidiaDB" }, + { + "chromosomes": 0, + "contigs": 0, + "genomeVersionAssemblyId": "GCA_000387425.2", + "organism": "Globisporangium irregulare DAOM BR486", + "species": "Globisporangium irregulare", + "strain": "DAOM BR486", + "supercontigs": 5887, + "ucscBrowserUrl": "https://genome.ucsc.edu/h/GCA_000387425.2", + "vEuPathDbProject": "FungiDB" + }, + { + "chromosomes": 0, + "contigs": 0, + "genomeVersionAssemblyId": "GCA_000387445.2", + "organism": "Pythium aphanidermatum DAOM BR444", + "species": "Pythium aphanidermatum", + "strain": "DAOM BR444", + "supercontigs": 1774, + "ucscBrowserUrl": "https://genome.ucsc.edu/h/GCA_000387445.2", + "vEuPathDbProject": "FungiDB" + }, + { + "chromosomes": 0, + "contigs": 0, + "genomeVersionAssemblyId": "GCA_000387465.2", + "organism": "Globisporangium iwayamae DAOM BR242034", + "species": "Globisporangium iwayamae", + "strain": "DAOM BR242034", + "supercontigs": 11542, + "ucscBrowserUrl": "https://genome.ucsc.edu/h/GCA_000387465.2", + "vEuPathDbProject": "FungiDB" + }, + { + "chromosomes": 0, + "contigs": 0, + "genomeVersionAssemblyId": "GCA_000387505.2", + "organism": "Pythium arrhenomanes ATCC 12531", + "species": "Pythium arrhenomanes", + "strain": "ATCC 12531", + "supercontigs": 10972, + "ucscBrowserUrl": "https://genome.ucsc.edu/h/GCA_000387505.2", + "vEuPathDbProject": "FungiDB" + }, + { + "chromosomes": 0, + "contigs": 0, + "genomeVersionAssemblyId": "GCA_000387525.2", + "organism": "Globisporangium ultimum var. sporangiiferum BR650", + "species": "Globisporangium ultimum", + "strain": "var. sporangiiferum BR650", + "supercontigs": 5482, + "ucscBrowserUrl": "https://genome.ucsc.edu/h/GCA_000387525.2", + "vEuPathDbProject": "FungiDB" + }, + { + "chromosomes": 0, + "contigs": 0, + "genomeVersionAssemblyId": "GCA_000387545.2", + "organism": "Phytopythium vexans DAOM 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Assemblage A", + "strain": "AS175", + "supercontigs": 0, + "ucscBrowserUrl": "https://genome.ucsc.edu/h/GCA_001493575.1", + "vEuPathDbProject": "GiardiaDB" + }, + { + "chromosomes": 0, + "contigs": 0, + "genomeVersionAssemblyId": "GCA_001543975.1", + "organism": "Giardia Assemblage B isolate BAH15c1", + "species": "Giardia Assemblage B", + "strain": "isolate BAH15c1", + "supercontigs": 508, + "ucscBrowserUrl": "https://genome.ucsc.edu/h/GCA_001543975.1", + "vEuPathDbProject": "GiardiaDB" + }, { "chromosomes": 0, "contigs": 11196, @@ -3893,6 +4058,17 @@ "ucscBrowserUrl": "https://genome.ucsc.edu/h/GCA_001642415.1", "vEuPathDbProject": "MicrosporidiaDB" }, + { + "chromosomes": 0, + "contigs": 0, + "genomeVersionAssemblyId": "GCA_001643675.2", + "organism": "Monocercomonoides exilis PA203", + "species": "Monocercomonoides exilis", + "strain": "PA203", + "supercontigs": 101, + "ucscBrowserUrl": "https://genome.ucsc.edu/h/GCA_001643675.2", + "vEuPathDbProject": "GiardiaDB" + }, { "chromosomes": 0, "contigs": 234, @@ -4410,6 +4586,17 @@ "ucscBrowserUrl": "https://genome.ucsc.edu/h/GCF_002237265.1", "vEuPathDbProject": "FungiDB" }, + { + "chromosomes": 0, + "contigs": 1897, + "genomeVersionAssemblyId": "GCA_002247145.1", + "organism": "Phytophthora plurivora AV1007", + "species": "Phytophthora plurivora", + "strain": "AV1007", + "supercontigs": 0, + "ucscBrowserUrl": "https://genome.ucsc.edu/h/GCA_002247145.1", + "vEuPathDbProject": "FungiDB" + }, { "chromosomes": 0, "contigs": 751, @@ -4575,6 +4762,17 @@ "ucscBrowserUrl": "https://genome.ucsc.edu/h/GCF_002897235.1", "vEuPathDbProject": "PiroplasmaDB" }, + { + "chromosomes": 0, + "contigs": 24809, + "genomeVersionAssemblyId": "GCA_002911725.1", + "organism": "Phytophthora palmivora var. palmivora strain sbr112.9", + "species": "Phytophthora palmivora", + "strain": "var. palmivora strain sbr112.9", + "supercontigs": 0, + "ucscBrowserUrl": "https://genome.ucsc.edu/h/GCA_002911725.1", + "vEuPathDbProject": "FungiDB" + }, { "chromosomes": 0, "contigs": 3460, @@ -4850,6 +5048,17 @@ "ucscBrowserUrl": "https://genome.ucsc.edu/h/GCF_003184865.1", "vEuPathDbProject": "FungiDB" }, + { + "chromosomes": 0, + "contigs": 0, + "genomeVersionAssemblyId": "GCA_003287315.1", + "organism": "Phytophthora cactorum 10300", + "species": "Phytophthora cactorum", + "strain": "10300", + "supercontigs": 4623, + "ucscBrowserUrl": "https://genome.ucsc.edu/h/GCA_003287315.1", + "vEuPathDbProject": "FungiDB" + }, { "chromosomes": 9, "contigs": 0, @@ -5103,6 +5312,17 @@ "ucscBrowserUrl": "https://genome.ucsc.edu/h/GCA_003814445.1", "vEuPathDbProject": "FungiDB" }, + { + "chromosomes": 0, + "contigs": 0, + "genomeVersionAssemblyId": "GCA_003843895.1", + "organism": "Peronospora effusa R13", + "species": "Peronospora effusa", + "strain": "R13", + "supercontigs": 784, + "ucscBrowserUrl": "https://genome.ucsc.edu/h/GCA_003843895.1", + "vEuPathDbProject": "FungiDB" + }, { "chromosomes": 3, "contigs": 0, @@ -5235,6 +5455,17 @@ "ucscBrowserUrl": "https://genome.ucsc.edu/h/GCA_004355085.1", "vEuPathDbProject": "FungiDB" }, + { + "chromosomes": 19, + "contigs": 0, + "genomeVersionAssemblyId": "GCA_004359215.2", + "organism": "Bremia lactucae strain SF5", + "species": "Bremia lactucae", + "strain": "strain SF5", + "supercontigs": 201, + "ucscBrowserUrl": "https://genome.ucsc.edu/h/GCA_004359215.2", + "vEuPathDbProject": "FungiDB" + }, { "chromosomes": 0, "contigs": 0, @@ -5268,6 +5499,17 @@ "ucscBrowserUrl": "https://genome.ucsc.edu/h/GCA_004936735.2", "vEuPathDbProject": "CryptoDB" }, + { + "chromosomes": 5, + "contigs": 54, + "genomeVersionAssemblyId": "GCA_006247105.1", + "organism": "Giardia muris strain Roberts-Thomson", + "species": "Giardia muris", + "strain": "strain Roberts-Thomson", + "supercontigs": 0, + "ucscBrowserUrl": "https://genome.ucsc.edu/h/GCA_006247105.1", + "vEuPathDbProject": "GiardiaDB" + }, { "chromosomes": 0, "contigs": 0, @@ -5719,6 +5961,17 @@ "ucscBrowserUrl": "https://genome.ucsc.edu/h/GCA_014805705.1", "vEuPathDbProject": "MicrosporidiaDB" }, + { + "chromosomes": 37, + "contigs": 0, + "genomeVersionAssemblyId": "GCA_014843625.1", + "organism": "Naegleria fowleri strain Ty", + "species": "Naegleria fowleri", + "strain": "strain Ty", + "supercontigs": 0, + "ucscBrowserUrl": "https://genome.ucsc.edu/h/GCA_014843625.1", + "vEuPathDbProject": "AmoebaDB" + }, { "chromosomes": 0, "contigs": 0, @@ -5829,6 +6082,17 @@ "ucscBrowserUrl": "https://genome.ucsc.edu/h/GCA_016256075.1", "vEuPathDbProject": "MicrosporidiaDB" }, + { + "chromosomes": 0, + "contigs": 0, + "genomeVersionAssemblyId": "GCA_016618375.1", + "organism": "Phytophthora capsici LT1534", + "species": "Phytophthora capsici", + "strain": "LT1534", + "supercontigs": 782, + "ucscBrowserUrl": "https://genome.ucsc.edu/h/GCA_016618375.1", + "vEuPathDbProject": "FungiDB" + }, { "chromosomes": 0, "contigs": 0, @@ -6071,6 +6335,17 @@ "ucscBrowserUrl": "https://genome.ucsc.edu/h/GCA_018398765.1", "vEuPathDbProject": "CryptoDB" }, + { + "chromosomes": 8, + "contigs": 0, + "genomeVersionAssemblyId": "GCA_018416015.2", + "organism": "Coccidioides posadasii strain Silveira 2022", + "species": "Coccidioides posadasii", + "strain": "strain Silveira 2022", + "supercontigs": 0, + "ucscBrowserUrl": "https://genome.ucsc.edu/h/GCA_018416015.2", + "vEuPathDbProject": "FungiDB" + }, { "chromosomes": 0, "contigs": 0, @@ -6082,6 +6357,17 @@ "ucscBrowserUrl": "https://genome.ucsc.edu/h/GCA_018466815.1", "vEuPathDbProject": "AmoebaDB" }, + { + "chromosomes": 0, + "contigs": 0, + "genomeVersionAssemblyId": "GCA_018691715.1", + "organism": "Phytophthora cinnamomi GKB4", + "species": "Phytophthora cinnamomi", + "strain": "GKB4", + "supercontigs": 133, + "ucscBrowserUrl": "https://genome.ucsc.edu/h/GCA_018691715.1", + "vEuPathDbProject": "FungiDB" + }, { "chromosomes": 0, "contigs": 0, @@ -6126,6 +6412,28 @@ "ucscBrowserUrl": "https://genome.ucsc.edu/h/GCF_019968955.1", "vEuPathDbProject": "CryptoDB" }, + { + "chromosomes": 0, + "contigs": 0, + "genomeVersionAssemblyId": "GCA_020184695.1", + "organism": "Histomonas meleagridis 2922-C6/04-290x", + "species": "Histomonas meleagridis", + "strain": "2922-C6/04-290x", + "supercontigs": 281, + "ucscBrowserUrl": "https://genome.ucsc.edu/h/GCA_020184695.1", + "vEuPathDbProject": "TrichDB" + }, + { + "chromosomes": 0, + "contigs": 0, + "genomeVersionAssemblyId": "GCA_020186115.1", + "organism": "Histomonas meleagridis 2922-C6/04-10x", + "species": "Histomonas meleagridis", + "strain": "2922-C6/04-10x", + "supercontigs": 187, + "ucscBrowserUrl": "https://genome.ucsc.edu/h/GCA_020186115.1", + "vEuPathDbProject": "TrichDB" + }, { "chromosomes": 0, "contigs": 0, @@ -6192,6 +6500,28 @@ "ucscBrowserUrl": "https://genome.ucsc.edu/h/GCA_020716745.1", "vEuPathDbProject": "FungiDB" }, + { + "chromosomes": 0, + "contigs": 0, + "genomeVersionAssemblyId": "GCA_020800215.1", + "organism": "Phytophthora ramorum strain Pr102", + "species": "Phytophthora ramorum", + "strain": "strain Pr102", + "supercontigs": 28, + "ucscBrowserUrl": "https://genome.ucsc.edu/h/GCA_020800215.1", + "vEuPathDbProject": "FungiDB" + }, + { + "chromosomes": 0, + "contigs": 0, + "genomeVersionAssemblyId": "GCA_020800235.1", + "organism": "Phytophthora ramorum 14567", + "species": "Phytophthora ramorum", + "strain": "14567", + "supercontigs": 27, + "ucscBrowserUrl": "https://genome.ucsc.edu/h/GCA_020800235.1", + "vEuPathDbProject": "FungiDB" + }, { "chromosomes": 14, "contigs": 0, @@ -6225,6 +6555,17 @@ "ucscBrowserUrl": "https://genome.ucsc.edu/h/GCA_021020605.1", "vEuPathDbProject": "AmoebaDB" }, + { + "chromosomes": 0, + "contigs": 0, + "genomeVersionAssemblyId": "GCA_021527665.1", + "organism": "Aphanomyces euteiches MF1", + "species": "Aphanomyces euteiches", + "strain": "MF1", + "supercontigs": 7789, + "ucscBrowserUrl": "https://genome.ucsc.edu/h/GCA_021527665.1", + "vEuPathDbProject": "FungiDB" + }, { "chromosomes": 0, "contigs": 0, @@ -6280,6 +6621,17 @@ "ucscBrowserUrl": "https://genome.ucsc.edu/h/GCA_022385695.1", "vEuPathDbProject": "FungiDB" }, + { + "chromosomes": 0, + "contigs": 0, + "genomeVersionAssemblyId": "GCA_022530875.1", + "organism": "Naegleria lovaniensis NL_76_15_250", + "species": "Naegleria lovaniensis", + "strain": "NL_76_15_250", + "supercontigs": 199, + "ucscBrowserUrl": "https://genome.ucsc.edu/h/GCA_022530875.1", + "vEuPathDbProject": "AmoebaDB" + }, { "chromosomes": 0, "contigs": 0, @@ -6731,6 +7083,17 @@ "ucscBrowserUrl": "https://genome.ucsc.edu/h/GCA_900184105.1", "vEuPathDbProject": "FungiDB" }, + { + "chromosomes": 0, + "contigs": 0, + "genomeVersionAssemblyId": "GCA_900231805.1", + "organism": "Trichomonas tenax strain NIH4 ATCC 30207", + "species": "Trichomonas tenax", + "strain": "strain NIH4 ATCC 30207", + "supercontigs": 4161, + "ucscBrowserUrl": "https://genome.ucsc.edu/h/GCA_900231805.1", + "vEuPathDbProject": "TrichDB" + }, { "chromosomes": 0, "contigs": 0, @@ -7160,6 +7523,17 @@ "ucscBrowserUrl": "https://genome.ucsc.edu/h/GCA_949152365.1", "vEuPathDbProject": "PlasmoDB" }, + { + "chromosomes": 7, + "contigs": 0, + "genomeVersionAssemblyId": "GCF_000004695.1", + "organism": "Dictyostelium discoideum AX4", + "species": "Dictyostelium discoideum", + "strain": "AX4", + "supercontigs": 33, + "ucscBrowserUrl": "https://genome.ucsc.edu/h/GCA_000004695.1", + "vEuPathDbProject": "AmoebaDB" + }, { "chromosomes": 0, "contigs": 0, @@ -7193,6 +7567,28 @@ "ucscBrowserUrl": "https://genome.ucsc.edu/h/GCF_000182805.3", "vEuPathDbProject": "FungiDB" }, + { + "chromosomes": 0, + "contigs": 0, + "genomeVersionAssemblyId": "GCF_000190715.1", + "organism": "Dictyostelium purpureum QSDP1", + "species": "Dictyostelium purpureum", + "strain": "QSDP1", + "supercontigs": 799, + "ucscBrowserUrl": "https://genome.ucsc.edu/h/GCA_000190715.1", + "vEuPathDbProject": "AmoebaDB" + }, + { + "chromosomes": 0, + "contigs": 0, + "genomeVersionAssemblyId": "GCF_000257125.1", + "organism": "Entamoeba nuttalli P19", + "species": "Entamoeba nuttalli", + "strain": "P19", + "supercontigs": 5233, + "ucscBrowserUrl": "https://genome.ucsc.edu/h/GCA_000257125.1", + "vEuPathDbProject": "AmoebaDB" + }, { "chromosomes": 0, "contigs": 0, @@ -7248,6 +7644,17 @@ "ucscBrowserUrl": "https://genome.ucsc.edu/h/GCF_001477545.1", "vEuPathDbProject": "FungiDB" }, + { + "chromosomes": 0, + "contigs": 0, + "genomeVersionAssemblyId": "GCF_001876365.2", + "organism": "Aedes albopictus C6/36 cell line", + "species": "Aedes albopictus", + "strain": "C6/36 cell line", + "supercontigs": 2434, + "ucscBrowserUrl": "https://genome.ucsc.edu/h/GCF_001876365.2", + "vEuPathDbProject": "VectorBase" + }, { "chromosomes": 0, "contigs": 738, diff --git a/files/source/genomes.tsv b/files/source/genomes.tsv index 3e51dd8..984b182 100644 --- a/files/source/genomes.tsv +++ b/files/source/genomes.tsv @@ -13,6 +13,7 @@ Aspergillus wentii DTO 134E9 GenBank GCA_001890725.1 yes 0 27 0 Aspergillus went Penicilliopsis zonata CBS 506.65 GenBank GCA_001890105.1 yes 0 246 0 Penicilliopsis zonata CBS 506.65 FungiDB 1073090.0 GCF_001890105.1_Aspzo1 GCA_001890105.1 GCF_001890105.1 True Penicilliopsis zonata CBS 506.65 ascomycetes P.zonata CBS 506.65 https://genome.ucsc.edu/h/GCF_001890105.1 Toxoplasma gondii ARI GenBank GCA_000250965.2 no 0 2723 0 Toxoplasma gondii ARI ToxoDB 1074872.0 GCA_000250965.2_TGARI_v2 GCA_000250965.2 False Toxoplasma gondii ARI apicomplexans T.gondii (ARI 2016) https://genome.ucsc.edu/h/GCA_000250965.2 Toxoplasma gondii COUG GenBank GCA_000338675.2 no 4075 105 0 Toxoplasma gondii COUG ToxoDB 1074873.0 GCA_000338675.2_TGCOUG_v2 GCA_000338675.2 False Toxoplasma gondii COUG apicomplexans T.gondii (COUG 2017) https://genome.ucsc.edu/h/GCA_000338675.2 +Entamoeba nuttalli P19 GenBank GCF_000257125.1 yes 0 5233 0 Entamoeba nuttalli P19 AmoebaDB 1076696.0 GCA_000257125.1_ENU1_v1 GCA_000257125.1 GCF_000257125.1 True Entamoeba nuttalli P19 E.nuttalli (P19 2012) https://genome.ucsc.edu/h/GCA_000257125.1 Pyronema omphalodes CBS 100304 INSDC GCA_024516155.1 yes 0 260 0 Pyronema omphalodes CBS 100304 FungiDB 337075.0 GCA_024516155.1_Pyrom1 GCA_024516155.1 False Pyronema omphalodes ascomycetes P.omphalodes (CBS 144459 2022) https://genome.ucsc.edu/h/GCA_024516155.1 Fusarium odoratissimum NRRL 54006 GenBank GCA_000260195.2 no 0 418 0 Fusarium odoratissimum NRRL 54006 FungiDB 1089451.0 GCF_000260195.1_FO_II5_V1 GCA_000260195.2 GCF_000260195.1 True Fusarium odoratissimum NRRL 54006 ascomycetes F.odoratissimum NRRL 54006 https://genome.ucsc.edu/h/GCF_000260195.1 Fusarium oxysporum f. sp. melonis 26406 GenBank GCA_000260495.2 no 0 1146 0 Fusarium oxysporum f. sp. melonis 26406 FungiDB 1089452.0 GCA_000260495.2_FO_melonis_V1 GCA_000260495.2 False Fusarium oxysporum f. sp. melonis 26406 ascomycetes F.oxysporum f. sp. melonis (26406 2014) https://genome.ucsc.edu/h/GCA_000260495.2 @@ -48,6 +49,12 @@ Toxoplasma gondii RH-88 INSDC GCA_013099955.1 no 0 183 13 Toxoplasma gondii RH-8 Pneumocystis jirovecii SE8 GenBank GCA_000333975.2 yes 0 328 0 Pneumocystis jirovecii SE8 FungiDB 42068.0 GCA_000333975.2_ASM33397v2 GCA_000333975.2 False Pneumocystis jirovecii ascomycetes P.jirovecii (SE8 2012) https://genome.ucsc.edu/h/GCA_000333975.2 Cyphellophora europaea CBS 101466 GenBank GCA_000365145.2 yes 0 19 0 Cyphellophora europaea CBS 101466 FungiDB 1220924.0 GCF_000365145.1_Phia_euro_CBS_101466_V1 GCA_000365145.2 GCF_000365145.1 True Cyphellophora europaea CBS 101466 ascomycetes C.europaea CBS 101466 https://genome.ucsc.edu/h/GCF_000365145.1 Mucor circinelloides 1006PhL GenBank GCA_000401635.1 yes 0 470 0 Mucor circinelloides 1006PhL FungiDB 1220926.0 GCA_000401635.1_Muco_sp_1006Ph_V1 GCA_000401635.1 False Mucor circinelloides 1006PhL fungi M.circinelloides (1006PhL 2013) https://genome.ucsc.edu/h/GCA_000401635.1 +Pythium aphanidermatum DAOM BR444 GenBank GCA_000387445.2 yes 0 1774 0 Pythium aphanidermatum DAOM BR444 FungiDB 1223555.0 GCA_000387445.2_pag1_scaffolds_v1 GCA_000387445.2 False Pythium aphanidermatum DAOM BR444 oomycetes (DAOM BR444 2013) https://genome.ucsc.edu/h/GCA_000387445.2 +Pythium arrhenomanes ATCC 12531 GenBank GCA_000387505.2 yes 0 10972 0 Pythium arrhenomanes ATCC 12531 FungiDB 1223556.0 GCA_000387505.2_par_scaffolds_v1 GCA_000387505.2 False Pythium arrhenomanes ATCC 12531 oomycetes (ATCC 12531 2013) https://genome.ucsc.edu/h/GCA_000387505.2 +Globisporangium irregulare DAOM BR486 GenBank GCA_000387425.2 yes 0 5887 0 Globisporangium irregulare DAOM BR486 FungiDB 1223557.0 GCA_000387425.2_pir_scaffolds_v1 GCA_000387425.2 False Globisporangium irregulare DAOM BR486 oomycetes (DAOM BR486 2013) https://genome.ucsc.edu/h/GCA_000387425.2 +Globisporangium iwayamae DAOM BR242034 GenBank GCA_000387465.2 yes 0 11542 0 Globisporangium iwayamae DAOM BR242034 FungiDB 1223558.0 GCA_000387465.2_piw_scaffolds_v1 GCA_000387465.2 False Globisporangium iwayamae DAOM BR242034 oomycetes (DAOM BR242034 2013) https://genome.ucsc.edu/h/GCA_000387465.2 +Globisporangium ultimum var. sporangiiferum BR650 GenBank GCA_000387525.2 no 0 5482 0 Globisporangium ultimum var. sporangiiferum BR650 FungiDB 1223559.0 GCA_000387525.2_pug3_scaffolds_v1 GCA_000387525.2 False Globisporangium ultimum var. sporangiiferum BR650 oomycetes (DAOM BR650 2013) https://genome.ucsc.edu/h/GCA_000387525.2 +Phytopythium vexans DAOM BR484 GenBank GCA_000387545.2 yes 0 3685 0 Phytopythium vexans DAOM BR484 FungiDB 1223560.0 GCA_000387545.2_pve_scaffolds_v1 GCA_000387545.2 False Phytopythium vexans DAOM BR484 oomycetes (DAOM BR484 2013) https://genome.ucsc.edu/h/GCA_000387545.2 Fusarium proliferatum ET1 GenBank GCA_900067095.1 yes 32 0 0 Fusarium proliferatum ET1 FungiDB 1227346.0 GCF_900067095.1_F._proliferatum_ET1_version_1 GCA_900067095.1 GCF_900067095.1 True Fusarium proliferatum ET1 ascomycetes F.proliferatum ET1 https://genome.ucsc.edu/h/GCF_900067095.1 Fusarium oxysporum f. sp. cubense race 1 GenBank GCA_000350345.1 no 0 1341 0 Fusarium oxysporum f. sp. cubense race 1 FungiDB 1229664.0 GCA_000350345.1_Foc1_1.0 GCA_000350345.1 False Fusarium oxysporum f. sp. cubense race 1 ascomycetes F.oxysporum f. sp. cubense (race 1 2013) https://genome.ucsc.edu/h/GCA_000350345.1 Malassezia sympodialis ATCC 42132 INSDC GCA_900149145.1 yes 0 0 8 Malassezia sympodialis ATCC 42132 FungiDB 1230383.0 GCA_900149145.1_Msy_ATCC_42132_Feb2016 GCA_900149145.1 False Malassezia sympodialis ATCC 42132 basidiomycetes M.sympodialis (ATCC 42132 2017) https://genome.ucsc.edu/h/GCA_900149145.1 @@ -152,10 +159,12 @@ Histoplasma capsulatum NAm1 GenBank GCA_000149585.1 no 0 276 0 Histoplasma capsu Aspergillus terreus NIH2624 GenBank GCA_000149615.1 yes 0 26 0 Aspergillus terreus NIH2624 FungiDB 341663.0 GCF_000149615.1_ASM14961v1 GCA_000149615.1 GCF_000149615.1 True Aspergillus terreus NIH2624 ascomycetes A.terreus NIH2624 https://genome.ucsc.edu/h/GCF_000149615.1 Aspergillus clavatus NRRL 1 GenBank GCA_000002715.1 yes 0 143 0 Aspergillus clavatus NRRL 1 FungiDB 344612.0 GCF_000002715.2_ASM271v1 GCA_000002715.1 GCF_000002715.2 True Aspergillus clavatus NRRL 1 ascomycetes A.clavatus NRRL 1 https://genome.ucsc.edu/h/GCF_000002715.2 Leishmania major strain Friedlin GenBank GCA_000002725.2 yes 0 0 36 Leishmania major strain Friedlin TriTrypDB 347515.0 GCF_000002725.2_ASM272v2 GCA_000002725.2 GCF_000002725.2 True Leishmania major strain Friedlin Leishmania major (Friedlin 2011 kinetoplastids refseq) https://genome.ucsc.edu/h/GCF_000002725.2 +Dictyostelium discoideum AX4 INSDC GCF_000004695.1 yes 0 33 7 Dictyostelium discoideum AX4 AmoebaDB 352472.0 GCA_000004695.1_dicty_2.7 GCA_000004695.1 GCF_000004695.1 False Dictyostelium discoideum AX4 cellular slime molds (AX4 2009) https://genome.ucsc.edu/h/GCA_000004695.1 Plasmodium yoelii yoelii 17XNL GenBank GCA_000003085.2 no 5617 0 0 Plasmodium yoelii yoelii 17XNL PlasmoDB 73239.0 GCF_000003085.2_ASM308v2 GCA_000003085.2 GCF_000003085.2 True Plasmodium yoelii yoelii apicomplexans P.yoelii yoelii (17XNL 2002) https://genome.ucsc.edu/h/GCF_000003085.2 Cryptosporidium hominis TU502 GenBank GCA_000006425.1 yes 1422 0 0 Cryptosporidium hominis TU502 CryptoDB 353151.0 GCF_000006425.1_ASM642v1 GCA_000006425.1 GCF_000006425.1 True Cryptosporidium hominis TU502 apicomplexans C.hominis (TU502 2004 refseq) https://genome.ucsc.edu/h/GCF_000006425.1 Cryptosporidium parvum Iowa II GenBank GCA_000165345.1 yes 0 0 8 Cryptosporidium parvum Iowa II CryptoDB 353152.0 GCF_000165345.1_ASM16534v1 GCA_000165345.1 GCF_000165345.1 True Cryptosporidium parvum Iowa II apicomplexans C.parvum (Iowa type II 2007) https://genome.ucsc.edu/h/GCF_000165345.1 Trypanosoma cruzi strain CL Brener GenBank GCA_000209065.1 no 29407 0 0 Trypanosoma cruzi strain CL Brener TriTrypDB 5693.0 GCF_000209065.1_ASM20906v1 GCA_000209065.1 GCF_000209065.1 True Trypanosoma cruzi Trypanosoma cruzi (CL Brener 2005 kinetoplastids) https://genome.ucsc.edu/h/GCF_000209065.1 +Theileria annulata strain Ankara GenBank GCA_000003225.1 yes 0 0 4 Theileria annulata strain Ankara PiroplasmaDB 5874.0 GCA_000003225.1_ASM322v1 GCA_000003225.1 GCF_000003225.2 False Theileria annulata apicomplexans T.annulata (Ankara isolate clone C9 2005) https://genome.ucsc.edu/h/GCA_000003225.1 Plasmodium falciparum 3D7 GenBank GCA_000002765.3 yes 0 0 14 Plasmodium falciparum 3D7 PlasmoDB 36329.0 GCF_000002765.5_GCA_000002765 GCA_000002765.3 GCF_000002765.5 False Plasmodium falciparum 3D7 malaria parasite P. falciparum (3D7 2016 refseq) https://genome.ucsc.edu/h/GCF_000002765.5 Trypanosoma cruzi strain Esmeraldo GenBank GCA_000327425.1 no 15007 796 0 Trypanosoma cruzi strain Esmeraldo TriTrypDB 366581.0 GCA_000327425.1_Trypanosoma_cruzi-5.1.3 GCA_000327425.1 False Trypanosoma cruzi strain Esmeraldo Trypanosoma cruzi strain (Esmeraldo cl. 3 2013) https://genome.ucsc.edu/h/GCA_000327425.1 Neurospora crassa OR74A GenBank GCA_000182925.2 yes 0 13 7 Neurospora crassa OR74A FungiDB 367110.0 GCF_000182925.2_NC12 GCA_000182925.2 GCF_000182925.2 True Neurospora crassa OR74A ascomycetes N.crassa OR74A https://genome.ucsc.edu/h/GCF_000182925.2 @@ -180,6 +189,8 @@ Malassezia restricta CBS 7877 INSDC GCA_003691605.1 no 0 0 9 Malassezia restrict Fusarium oxysporum f. sp. lycopersici 4287 GenBank GCA_000149955.2 yes 0 70 15 Fusarium oxysporum f. sp. lycopersici 4287 FungiDB 426428.0 GCF_000149955.1_ASM14995v2 GCA_000149955.2 GCF_000149955.1 False Fusarium oxysporum f. sp. lycopersici 4287 ascomycetes F.oxysporum (f. sp. lycopersici 4287 2015) https://genome.ucsc.edu/h/GCF_000149955.1 Trypanosoma rangeli SC58 GenBank GCA_000492115.1 yes 7433 0 0 Trypanosoma rangeli SC58 TriTrypDB 429131.0 GCA_000492115.1_T_rangeli_SC58v1 GCA_000492115.1 False Trypanosoma rangeli SC58 Trypanosoma rangeli (SC58 2013) https://genome.ucsc.edu/h/GCA_000492115.1 Trichoderma reesei QM6a GenBank GCA_000167675.2 yes 0 77 0 Trichoderma reesei QM6a FungiDB 431241.0 GCF_000167675.1_v2.0 GCA_000167675.2 GCF_000167675.1 True Trichoderma reesei QM6a ascomycetes T.reesei QM6a https://genome.ucsc.edu/h/GCF_000167675.1 +Globisporangium ultimum DAOM BR144 GenBank GCA_000143045.1 yes 0 975 0 Globisporangium ultimum DAOM BR144 FungiDB 431595.0 GCA_000143045.1_pug GCA_000143045.1 False Globisporangium ultimum DAOM BR144 oomycetes (DAOM BR144 2010) https://genome.ucsc.edu/h/GCA_000143045.1 +Toxoplasma gondii VEG GenBank GCA_000150015.2 no 0 1290 14 Toxoplasma gondii VEG ToxoDB 432359.0 GCA_000150015.2_TGVEG GCA_000150015.2 False Toxoplasma gondii VEG apicomplexans T.gondii (VEG 2013) https://genome.ucsc.edu/h/GCA_000150015.2 Leishmania infantum JPCM5 GenBank GCA_900500625.2 yes 0 0 36 Leishmania infantum JPCM5 TriTrypDB 5671.0 GCA_900500625.2_LINF GCA_900500625.2 False Leishmania infantum Leishmania infantum (2020) https://genome.ucsc.edu/h/GCA_900500625.2 Cryptosporidium muris RN66 GenBank GCF_000006515.1 yes 0 84 0 Cryptosporidium muris RN66 CryptoDB 441375.0 GCF_000006515.1_JCVI_cmg_v1.0 GCA_000006515.1 GCF_000006515.1 True Cryptosporidium muris RN66 apicomplexans C.muris (RN66 2008) https://genome.ucsc.edu/h/GCF_000006515.1 Talaromyces stipitatus ATCC 10500 GenBank GCA_000003125.1 yes 0 820 0 Talaromyces stipitatus ATCC 10500 FungiDB 441959.0 GCF_000003125.1_JCVI-TSTA1-3.0 GCA_000003125.1 GCF_000003125.1 True Talaromyces stipitatus ATCC 10500 ascomycetes T.stipitatus ATCC 10500 https://genome.ucsc.edu/h/GCF_000003125.1 @@ -218,6 +229,7 @@ Saccharomyces cerevisiae S288C GenBank GCA_000146045.2 yes 0 0 16 Saccharomyces Blastomyces dermatitidis ER-3 INSDC GCA_000003525.2 yes 0 25 0 Blastomyces dermatitidis ER-3 FungiDB 559297.0 GCF_000003525.1_BD_ER3_V1 GCA_000003525.2 GCF_000003525.1 True Blastomyces dermatitidis ER-3 ascomycetes B.dermatitidis (ER-3 2009 refseq) https://genome.ucsc.edu/h/GCF_000003525.1 Blastomyces gilchristii SLH14081 INSDC GCA_000003855.2 yes 0 100 0 Blastomyces gilchristii SLH14081 FungiDB 559298.0 GCF_000003855.2_BD_SLH14081_V1 GCA_000003855.2 GCF_000003855.2 True Blastomyces gilchristii SLH14081 ascomycetes B.gilchristii (SLH14081 2009 refseq) https://genome.ucsc.edu/h/GCF_000003855.2 Trichophyton rubrum CBS 118892 INSDC GCA_000151425.1 yes 0 35 0 Trichophyton rubrum CBS 118892 FungiDB 559305.0 GCF_000151425.1_ASM15142v1 GCA_000151425.1 GCF_000151425.1 True Trichophyton rubrum CBS 118892 ascomycetes T.rubrum CBS 118892 https://genome.ucsc.edu/h/GCF_000151425.1 +Hyaloperonospora arabidopsidis Emoy2 GenBank GCA_000173235.2 yes 0 3044 0 Hyaloperonospora arabidopsidis Emoy2 FungiDB 559515.0 GCA_000173235.2_HyaAraEmoy2_2.0 GCA_000173235.2 False Hyaloperonospora arabidopsidis Emoy2 downy mildews (Emoy2 2012) https://genome.ucsc.edu/h/GCA_000173235.2 Trichophyton equinum CBS 127.97 INSDC GCA_000151175.1 yes 0 123 0 Trichophyton equinum CBS 127.97 FungiDB 559882.0 GCA_000151175.1_ASM15117v1 GCA_000151175.1 False Trichophyton equinum CBS 127.97 ascomycetes T.equinum (CBS 127.97 2008) https://genome.ucsc.edu/h/GCA_000151175.1 Neospora caninum Liverpool GenBank GCA_000208865.2 yes 52 0 14 Neospora caninum Liverpool ToxoDB 572307.0 GCF_000208865.1_ASM20886v2 GCA_000208865.2 GCF_000208865.1 True Neospora caninum Liverpool apicomplexans N.caninum (Liverpool 2011) https://genome.ucsc.edu/h/GCF_000208865.1 Plasmodium falciparum Dd2 GenBank GCA_900632045.1 no 0 0 14 Plasmodium falciparum Dd2 PlasmoDB 5833.0 GCA_900632045.1_PfDd2-3 GCA_900632045.1 False Plasmodium falciparum malaria parasite P. falciparum (2018) https://genome.ucsc.edu/h/GCA_900632045.1 @@ -232,6 +244,7 @@ Allomyces macrogynus ATCC 38327 GenBank GCA_000151295.1 yes 0 101 0 Allomyces ma Plasmodium berghei ANKA GenBank GCA_900002375.2 yes 5 0 14 Plasmodium berghei ANKA PlasmoDB 5823.0 GCF_900002375.2_GCA_900002375 GCA_900002375.2 GCF_900002375.2 False Plasmodium berghei ANKA apicomplexans P.berghei (ANKA 2019) https://genome.ucsc.edu/h/GCF_900002375.2 Plasmodium falciparum NF54 INSDC GCA_009761475.1 no 0 28 0 Plasmodium falciparum NF54 PlasmoDB 5833.0 GCA_009761475.1_NF54_v1 GCA_009761475.1 False Plasmodium falciparum malaria parasite P. falciparum (NF54 2019) https://genome.ucsc.edu/h/GCA_009761475.1 Plasmodium knowlesi strain H GenBank GCA_000006355.3 yes 148 0 14 Plasmodium knowlesi strain H PlasmoDB 5851.0 GCF_000006355.2_GCA_000006355.2 GCA_000006355.3 GCF_000006355.2 False Plasmodium knowlesi strain H apicomplexans P.knowlesi strain (H 2020) https://genome.ucsc.edu/h/GCF_000006355.2 +Giardia Assemblage B isolate GS GenBank GCA_000182405.1 no 2931 0 0 Giardia Assemblage B isolate GS GiardiaDB 598745.0 GCA_000182405.1_ASM18240v1 GCA_000182405.1 False Giardia intestinalis ATCC 50581 diplomonads (GS/M clone H7 2009) https://genome.ucsc.edu/h/GCA_000182405.1 Aspergillus carbonarius ITEM 5010 GenBank GCA_001990825.1 yes 0 829 0 Aspergillus carbonarius ITEM 5010 FungiDB 602072.0 GCA_001990825.1_Aspca3 GCA_001990825.1 False Aspergillus carbonarius ITEM 5010 ascomycetes A.carbonaris (ITEM 5010 2017) https://genome.ucsc.edu/h/GCA_001990825.1 Puccinia triticina 1-1 BBBD Race 1 GenBank GCA_000151525.2 yes 14818 0 0 Puccinia triticina 1-1 BBBD Race 1 FungiDB 630390.0 GCA_000151525.2_P_triticina_1_1_V2 GCA_000151525.2 False Puccinia triticina 1-1 BBBD Race 1 wheat leaf rust (1-1 BBBD Race 1 2016) https://genome.ucsc.edu/h/GCA_000151525.2 Gaeumannomyces tritici R3-111a-1 INSDC GCA_000145635.1 yes 0 513 0 Gaeumannomyces tritici R3-111a-1 FungiDB 644352.0 GCF_000145635.1_Gae_graminis_V2 GCA_000145635.1 GCF_000145635.1 True Gaeumannomyces tritici R3-111a-1 ascomycetes G.tritici R3-111a-1 https://genome.ucsc.edu/h/GCF_000145635.1 @@ -240,6 +253,7 @@ Colletotrichum graminicola M1.001 INSDC GCA_000149035.1 yes 0 653 0 Colletotrich Spizellomyces punctatus DAOM BR117 GenBank GCA_000182565.2 yes 0 38 0 Spizellomyces punctatus DAOM BR117 FungiDB 645134.0 GCF_000182565.1_S_punctatus_V1 GCA_000182565.2 GCF_000182565.1 True Spizellomyces punctatus DAOM BR117 chytrids S.punctatus DAOM BR117 https://genome.ucsc.edu/h/GCF_000182565.1 Trichophyton tonsurans CBS 112818 INSDC GCA_000151455.1 yes 0 110 0 Trichophyton tonsurans CBS 112818 FungiDB 647933.0 GCA_000151455.1_ASM15145v1 GCA_000151455.1 False Trichophyton tonsurans CBS 112818 ascomycetes T.tonsurans (CBS 112818 2009) https://genome.ucsc.edu/h/GCA_000151455.1 Pseudogymnoascus destructans 20631-21 INSDC GCA_000184105.1 yes 0 1846 0 Pseudogymnoascus destructans 20631-21 FungiDB 658429.0 GCF_000184105.1_Geom_destructans_V1 GCA_000184105.1 GCF_000184105.1 True Pseudogymnoascus destructans 20631-21 ascomycetes P.destructans (20631-21 2010) https://genome.ucsc.edu/h/GCF_000184105.1 +Giardia Assemblage E isolate P15 GenBank GCA_000182665.1 no 820 0 0 Giardia Assemblage E isolate P15 GiardiaDB 658858.0 GCA_000182665.1_ASM18266v1 GCA_000182665.1 False Giardia lamblia P15 diplomonads (P15 2010) https://genome.ucsc.edu/h/GCA_000182665.1 Fusarium oxysporum f. sp. conglutinans Fo5176 INSDC GCA_014154955.1 no 0 4 15 Fusarium oxysporum f. sp. conglutinans Fo5176 FungiDB 100902.0 GCA_014154955.1_SMRT_HiC_Fo5176 GCA_014154955.1 False Fusarium oxysporum f. sp. conglutinans ascomycetes F.oxysporum f. sp. conglutinans (Fo5176 2020) https://genome.ucsc.edu/h/GCA_014154955.1 Fusarium oxysporum Fo47 GenBank GCA_000271705.2 no 0 124 0 Fusarium oxysporum Fo47 FungiDB 660027.0 GCA_000271705.2_FO_Fo47_V1 GCA_000271705.2 False Fusarium oxysporum Fo47 ascomycetes F.oxysporum (Fo47 2014) https://genome.ucsc.edu/h/GCA_000271705.2 Fusarium oxysporum NRRL 32931 GenBank GCA_000271745.2 no 0 168 0 Fusarium oxysporum NRRL 32931 FungiDB 660029.0 GCF_000271745.1_FO_FOSC_3_a_V1 GCA_000271745.2 GCF_000271745.1 True Fusarium oxysporum NRRL 32931 ascomycetes F.oxysporum (NRRL 32931 2014 refseq) https://genome.ucsc.edu/h/GCF_000271745.1 @@ -255,6 +269,7 @@ Mucor lusitanicus CBS 277.49 GenBank GCA_001638945.1 yes 0 21 0 Mucor lusitanicu Colletotrichum higginsianum IMI 349063 INSDC GCA_001672515.1 yes 0 14 11 Colletotrichum higginsianum IMI 349063 FungiDB 759273.0 GCF_001672515.1_ASM167251v1 GCA_001672515.1 GCF_001672515.1 True Colletotrichum higginsianum IMI 349063 ascomycetes C.higginsianum IMI 349063 https://genome.ucsc.edu/h/GCF_001672515.1 Phytophthora parasitica INRA-310 GenBank GCA_000247585.2 yes 0 708 0 Phytophthora parasitica INRA-310 FungiDB 761204.0 GCF_000247585.1_PP_INRA-310_V2 GCA_000247585.2 GCF_000247585.1 True Phytophthora nicotianae INRA-310 black shank of tobacco agent (INRA-310 2013) https://genome.ucsc.edu/h/GCF_000247585.1 Phycomyces blakesleeanus NRRL 1555(-) GenBank GCA_001638985.2 yes 0 80 0 Phycomyces blakesleeanus NRRL 1555(-) FungiDB 763407.0 GCF_001638985.1_Phybl2 GCA_001638985.2 GCF_001638985.1 True Phycomyces blakesleeanus NRRL 1555- fungi P.blakesleeanus NRRL 1555(-) https://genome.ucsc.edu/h/GCF_001638985.1 +Phytophthora capsici LT1534 INSDC GCA_016618375.1 yes 0 782 0 Phytophthora capsici LT1534 FungiDB 4784.0 GCA_016618375.1_Pcap_4.1 GCA_016618375.1 False Phytophthora capsici downy mildews (LT1534-B 2021) https://genome.ucsc.edu/h/GCA_016618375.1 Aspergillus brasiliensis CBS 101740 GenBank GCA_001889945.1 yes 0 103 0 Aspergillus brasiliensis CBS 101740 FungiDB 767769.0 GCA_001889945.1_Aspbr1 GCA_001889945.1 False Aspergillus brasiliensis CBS 101740 ascomycetes A.brasiliensis (CBS 101740 2016) https://genome.ucsc.edu/h/GCA_001889945.1 Aspergillus tubingensis CBS 134.48 GenBank GCA_001890745.1 yes 0 33 0 Aspergillus tubingensis CBS 134.48 FungiDB 767770.0 GCA_001890745.1_Asptu1 GCA_001890745.1 False Aspergillus tubingensis CBS 134.48 ascomycetes A.tubingensis (CBS 134.48 2016) https://genome.ucsc.edu/h/GCA_001890745.1 Sordaria macrospora k-hell GenBank GCF_000182805.3 yes 0 1212 0 Sordaria macrospora k-hell FungiDB 771870.0 GCF_000182805.3_ASM18280v2 GCA_000182805.2 GCF_000182805.3 False Sordaria macrospora k-hell ascomycetes S.macrospora (v3 k-hell 2012) https://genome.ucsc.edu/h/GCF_000182805.3 @@ -296,6 +311,7 @@ Vittaforma corneae ATCC 50505 GenBank GCA_000231115.1 yes 0 220 0 Vittaforma cor Sporisorium reilianum SRZ2 GenBank GCA_000230245.1 yes 21 0 23 Sporisorium reilianum SRZ2 FungiDB 999809.0 GCA_000230245.1_ASM23024v1 GCA_000230245.1 False Sporisorium reilianum SRZ2 smut fungi S.reilianum SRZ2 (2011) https://genome.ucsc.edu/h/GCA_000230245.1 Aedes aegypti Aag2 INSDC GCA_021653915.1 no 0 3752 0 Aedes aegypti Aag2 VectorBase 7159.0 GCA_021653915.1_ASM2165391v1 GCA_021653915.1 False Aedes aegypti yellow fever mosquito (Aag2 2022) https://genome.ucsc.edu/h/GCA_021653915.1 Aedes aegypti LVP_AGWG INSDC GCA_002204515.1 yes 0 2306 3 Aedes aegypti LVP_AGWG VectorBase 7159.0 GCF_002204515.2_AaegL5.0 GCA_002204515.1 GCF_002204515.2 False Aedes aegypti yellow fever mosquito (LVP_AGWG 2017 refseq) https://genome.ucsc.edu/h/GCF_002204515.2 +Aedes albopictus C6/36 cell line INSDC GCF_001876365.2 no 0 2434 0 Aedes albopictus C6/36 cell line VectorBase 7160.0 GCF_001876365.2_canu_80X_arrow2.2 GCA_001876365.2 GCF_001876365.2 False Aedes albopictus Asian tiger mosquito (C6/36 2017 refseq) https://genome.ucsc.edu/h/GCF_001876365.2 Aedes albopictus Foshan FPA INSDC GCA_006496715.1 yes 0 2196 0 Aedes albopictus Foshan FPA VectorBase 7160.0 GCF_006496715.2_Aalbo_primary.1 GCA_006496715.1 GCF_006496715.2 False Aedes albopictus Asian tiger mosquito (v2 FPA 2019) https://genome.ucsc.edu/h/GCF_006496715.2 Anopheles albimanus STECLA INSDC GCA_000349125.2 no 0 196 5 Anopheles albimanus STECLA VectorBase 7167.0 GCA_000349125.2_Anop_albi_ALBI9_A_V2 GCA_000349125.2 False Anopheles albimanus mosquito A.albimanus (ALBI9_A 2017) https://genome.ucsc.edu/h/GCA_000349125.2 Anopheles albimanus STECLA 2020 INSDC GCF_013758885.1 yes 0 4 3 Anopheles albimanus STECLA 2020 VectorBase 7167.0 GCF_013758885.1_VT_AalbS3_pri_1.0 GCA_013758885.1 GCF_013758885.1 True Anopheles albimanus mosquito A.albimanus (STELCA 2020) https://genome.ucsc.edu/h/GCF_013758885.1 @@ -327,6 +343,7 @@ Anopheles darlingi Coari INSDC GCA_000211455.3 no 0 2220 0 Anopheles darlingi Co Angomonas deanei strain Cavalho ATCC PRA-265 INSDC GCA_903995115.1 yes 0 0 29 Angomonas deanei strain Cavalho ATCC PRA-265 TriTrypDB 59799.0 GCA_903995115.1_Adeanei_nanopore_chromosomes GCA_903995115.1 False Angomonas deanei Angomonas (Crithidia deanei Carvalho ATCC PRA-265 2020) https://genome.ucsc.edu/h/GCA_903995115.1 Anopheles dirus WRAIR2 INSDC GCA_000349145.1 yes 0 1266 0 Anopheles dirus WRAIR2 VectorBase 7168.0 GCA_000349145.1_Anop_diru_WRAIR2_V1 GCA_000349145.1 False Anopheles dirus mosquito A.dirus (WRAIR2 2013) https://genome.ucsc.edu/h/GCA_000349145.1 Anopheles epiroticus Epiroticus2 INSDC GCA_000349105.1 yes 0 2673 0 Anopheles epiroticus Epiroticus2 VectorBase 199890.0 GCA_000349105.1_Anop_epir_epiroticus2_V1 GCA_000349105.1 False Anopheles epiroticus mosquito A.epiroticus (epiroticus2 2013) https://genome.ucsc.edu/h/GCA_000349105.1 +Aphanomyces euteiches MF1 INSDC GCA_021527665.1 yes 0 7789 0 Aphanomyces euteiches MF1 FungiDB 100861.0 GCA_021527665.1_ASM2152766v1 GCA_021527665.1 False Aphanomyces euteiches oomycetes (MF1 2022) https://genome.ucsc.edu/h/GCA_021527665.1 Anopheles farauti FAR1 INSDC GCA_000473445.2 yes 0 310 0 Anopheles farauti FAR1 VectorBase 69004.0 GCA_000473445.2_Anop_fara_FAR1_V2 GCA_000473445.2 False Anopheles farauti mosquito A.farauti (FAR1 2014) https://genome.ucsc.edu/h/GCA_000473445.2 Arthrobotrys flagrans CBS H-5679 INSDC GCA_004000055.1 yes 0 14 0 Arthrobotrys flagrans CBS H-5679 FungiDB 97331.0 GCA_004000055.1_DF_1.0 GCA_004000055.1 False Arthrobotrys flagrans ascomycetes A.flagrans (CBS H-5679 2019) https://genome.ucsc.edu/h/GCA_004000055.1 Aspergillus flavus NRRL3357 2020 INSDC GCA_009017415.1 no 0 0 8 Aspergillus flavus NRRL3357 2020 FungiDB 5059.0 GCA_009017415.1_ASM901741v1 GCA_009017415.1 False Aspergillus flavus ascomycetes A.flavus (NRRL 3357 2019) https://genome.ucsc.edu/h/GCA_009017415.1 @@ -383,6 +400,7 @@ Babesia duncani strain WA1 2023 INSDC GCA_028658345.1 yes 0 160 5 Babesia duncan Biomphalaria glabrata XG47 INSDC GCF_947242115.1 yes 0 25 18 Biomphalaria glabrata XG47 VectorBase 6526.0 GCF_947242115.1_xgBioGlab47.1 GCA_947242115.1 GCF_947242115.1 False Biomphalaria glabrata bloodfluke planorb (primary hap 2022) https://genome.ucsc.edu/h/GCF_947242115.1 Blumeria graminis f. sp. triticale THUN-12 INSDC GCA_905067625.1 no 0 25 11 Blumeria graminis f. sp. triticale THUN-12 FungiDB 1689686.0 GCA_905067625.1_Bgtriticale_THUN12_genome_v1_2 GCA_905067625.1 False Blumeria graminis f. sp. triticale grass mildew (THUN-12 2021) https://genome.ucsc.edu/h/GCA_905067625.1 Blumeria hordei strain RACE1 INSDC GCA_900237765.1 yes 0 99 0 Blumeria hordei strain RACE1 FungiDB 2867405.0 GCA_900237765.1_BghRACE1_v1 GCA_900237765.1 False Blumeria hordei grass mildew (RACE1 RACE1 2018) https://genome.ucsc.edu/h/GCA_900237765.1 +Bremia lactucae strain SF5 INSDC GCA_004359215.2 yes 0 201 19 Bremia lactucae strain SF5 FungiDB 4779.0 GCA_004359215.2_BlacSF5v2 GCA_004359215.2 False Bremia lactucae lettuce downy mildew (SF5 2021) https://genome.ucsc.edu/h/GCA_004359215.2 Balamuthia mandrillaris strain 2046 INSDC GCA_001262475.1 no 0 14699 0 Balamuthia mandrillaris strain 2046 AmoebaDB 66527.0 GCA_001262475.1_ASM126247v1 GCA_001262475.1 False Balamuthia mandrillaris B.mandrillaris (2046 2015) https://genome.ucsc.edu/h/GCA_001262475.1 Balamuthia mandrillaris CDC-V039 INSDC GCA_001185145.1 yes 0 1604 0 Balamuthia mandrillaris CDC-V039 AmoebaDB 66527.0 GCA_001185145.1_ASM118514v1 GCA_001185145.1 False Balamuthia mandrillaris B.mandrillaris (CDC-V039 2015) https://genome.ucsc.edu/h/GCA_001185145.1 Babesia microti strain ATCC 30222 INSDC GCA_001650055.1 no 234 0 0 Babesia microti strain ATCC 30222 PiroplasmaDB 5868.0 GCA_001650055.1_ASM165005v1 GCA_001650055.1 False Babesia microti apicomplexans B.microti (ATCC 30222 2016) https://genome.ucsc.edu/h/GCA_001650055.1 @@ -431,6 +449,7 @@ Cryptococcus neoformans strain:VNII INSDC GCA_022832995.1 no 0 0 14 Cryptococcus Cryptosporidium parvum 2022 INSDC GCA_019844115.2 no 0 0 8 Cryptosporidium parvum 2022 CryptoDB 5807.0 GCA_019844115.2_ASM1984411v2 GCA_019844115.2 False Cryptosporidium parvum apicomplexans C.parvum (2021) https://genome.ucsc.edu/h/GCA_019844115.2 Cryptosporidium parvum IOWA-ATCC GenBank GCA_015245375.1 no 0 0 8 Cryptosporidium parvum IOWA-ATCC CryptoDB 5807.0 GCA_015245375.1_ASM1524537v1 GCA_015245375.1 False Cryptosporidium parvum apicomplexans C.parvum (IOWA-ATCC 2020) https://genome.ucsc.edu/h/GCA_015245375.1 Cavia porcellus 2N INSDC GCA_000151735.1 yes 0 3143 0 Cavia porcellus 2N HostDB 10141.0 GCF_000151735.1_Cavpor3.0 GCA_000151735.1 GCF_000151735.1 False Cavia porcellus domestic guinea pig (2N 2008 refseq) https://genome.ucsc.edu/h/GCF_000151735.1 +Coccidioides posadasii strain Silveira 2022 INSDC GCA_018416015.2 no 0 0 8 Coccidioides posadasii strain Silveira 2022 FungiDB 443226.0 GCA_018416015.2_ASM1841601v2 GCA_018416015.2 GCF_018416015.1 False Coccidioides posadasii str. Silveira ascomycetes C.posadasii str. (Silveira 2022) https://genome.ucsc.edu/h/GCA_018416015.2 Candida pseudohaemulonii strain B12108 INSDC GCA_003013735.1 yes 0 36 0 [Candida] pseudohaemulonis B12108 FungiDB 418784.0 GCF_003013735.1_Cand_pseudohaemulonii_B12108 GCA_003013735.1 GCF_003013735.1 True Candidozyma pseudohaemuli budding yeast C.pseudohaemulonis https://genome.ucsc.edu/h/GCF_003013735.1 Chrysosporium queenslandicum isolate CBS 280.77 GenBank GCA_001430955.1 yes 2724 0 0 Chrysosporium queenslandicum isolate CBS 280.77 FungiDB 264361.0 GCA_001430955.1_ASM143095v1 GCA_001430955.1 False Chrysosporium queenslandicum ascomycetes C.queenslandicum (CBS 280.77 2015) https://genome.ucsc.edu/h/GCA_001430955.1 Culex quinquefasciatus JHB 2020 INSDC GCA_015732765.1 yes 53 0 3 Culex quinquefasciatus JHB 2020 VectorBase 7176.0 GCF_015732765.1_VPISU_Cqui_1.0_pri_paternal GCA_015732765.1 GCF_015732765.1 False Culex quinquefasciatus southern house mosquito https://genome.ucsc.edu/h/GCF_015732765.1 @@ -446,6 +465,7 @@ Dermacentor andersoni qqDerAnde1.2 INSDC GCF_023375885.1 yes 0 3118 0 Dermacento Debaryomyces fabryi CBS 789 INSDC GCA_001447935.2 yes 0 534 0 Debaryomyces fabryi CBS 789 FungiDB 58627.0 GCF_001447935.2_debFab1.1 GCA_001447935.2 GCF_001447935.2 True Debaryomyces fabryi budding yeast D.fabryi https://genome.ucsc.edu/h/GCF_001447935.2 Drosophila melanogaster iso-1 INSDC GCA_000001215.4 yes 0 1862 7 Drosophila melanogaster iso-1 VectorBase 7227.0 GCF_000001215.4_Release_6_plus_ISO1_MT GCA_000001215.4 GCF_000001215.4 True Drosophila melanogaster fly D.melanogaster https://genome.ucsc.edu/h/GCF_000001215.4 Dictyocoela muelleri Ou54 INSDC GCA_016256075.1 yes 0 11522 0 Dictyocoela muelleri Ou54 MicrosporidiaDB 279532.0 GCA_016256075.1_ASM1625607v1 GCA_016256075.1 False Dictyocoela muelleri microsporidians D.muelleri (Ou54 2020) https://genome.ucsc.edu/h/GCA_016256075.1 +Dictyostelium purpureum QSDP1 INSDC GCF_000190715.1 yes 0 799 0 Dictyostelium purpureum QSDP1 AmoebaDB 5786.0 GCA_000190715.1_v1.0 GCA_000190715.1 GCF_000190715.1 True Dictyostelium purpureum cellular slime molds (QSDP1 2011) https://genome.ucsc.edu/h/GCA_000190715.1 Dictyocoela roeselum Ou19 INSDC GCA_016255985.1 yes 0 1033 0 Dictyocoela roeselum Ou19 MicrosporidiaDB 288439.0 GCA_016255985.1_ASM1625598v1 GCA_016255985.1 False Dictyocoela roeselum microsporidians D.roeselum (Ou19 2020) https://genome.ucsc.edu/h/GCA_016255985.1 Diutina rugosa CBS 613 INSDC GCA_008704595.1 yes 0 169 0 Diutina rugosa CBS 613 FungiDB 5481.0 GCF_008704595.1_ASM870459v1 GCA_008704595.1 GCF_008704595.1 True Diutina rugosa budding yeast D.rugosa https://genome.ucsc.edu/h/GCF_008704595.1 Dermacentor silvarum Dsil-2018 INSDC GCA_013339745.2 yes 0 1653 11 Dermacentor silvarum Dsil-2018 VectorBase 543639.0 GCF_013339745.2_BIME_Dsil_1.4 GCA_013339745.2 GCF_013339745.2 False Dermacentor silvarum mites & ticks D.silvarum (v2 Dsil-2018 2022) https://genome.ucsc.edu/h/GCF_013339745.2 @@ -475,13 +495,16 @@ Fusarium mangiferae MRC7560 INSDC GCA_900044065.1 yes 0 254 0 Fusarium mangifera Fusarium odoratissimum strain race 4 GenBank GCA_000350365.1 yes 0 840 0 Fusarium odoratissimum strain race 4 FungiDB 2502994.0 GCA_000350365.1_Foc4_1.0 GCA_000350365.1 False Fusarium odoratissimum ascomycetes F.odoratissimum (race 4 2013) https://genome.ucsc.edu/h/GCA_000350365.1 Fusarium proliferatum strain NRRL62905 GenBank GCA_900029915.1 no 155 0 0 Fusarium proliferatum strain NRRL62905 FungiDB 948311.0 GCA_900029915.1_F._proliferatum_NRRL62905_version_1 GCA_900029915.1 False Fusarium proliferatum ascomycetes F.proliferatum (NRRL62905 2016) https://genome.ucsc.edu/h/GCA_900029915.1 Fusarium solani FSSC 5 MPI-SDFR-AT-0091 INSDC GCF_020744495.1 yes 0 74 0 Fusarium solani FSSC 5 MPI-SDFR-AT-0091 FungiDB 169388.0 GCF_020744495.1_Fusso1 GCA_020744495.1 GCF_020744495.1 True Fusarium solani ascomycetes F.solani https://genome.ucsc.edu/h/GCF_020744495.1 +Giardia assemblage A isolate AS175 GenBank GCA_001493575.1 no 1139 0 0 Giardia Assemblage A AS175 GiardiaDB 941442.0 GCA_001493575.1_GIAS175 GCA_001493575.1 False Giardia intestinalis assemblage A diplomonads (AS175 2013) https://genome.ucsc.edu/h/GCA_001493575.1 Giardia Assemblage A isolate WB 2019 INSDC GCA_000002435.2 yes 0 30 5 Giardia Assemblage A isolate WB 2019 GiardiaDB 5741.0 GCF_000002435.2_UU_WB_2.1 GCA_000002435.2 GCF_000002435.2 True Giardia intestinalis diplomonads (WB C6 2019) https://genome.ucsc.edu/h/GCF_000002435.2 +Giardia Assemblage B isolate BAH15c1 GenBank GCA_001543975.1 no 0 508 0 Giardia Assemblage B isolate BAH15c1 GiardiaDB 1394984.0 GCA_001543975.1_G_duodenalis_AssB_BAH15c1 GCA_001543975.1 False Giardia intestinalis assemblage B diplomonads (BAH15c1 2016) https://genome.ucsc.edu/h/GCA_001543975.1 Glossina austeni TTRI INSDC GCA_000688735.1 yes 0 2205 0 Glossina austeni TTRI VectorBase 7395.0 GCA_000688735.1_Glossina_austeni-1.0.3 GCA_000688735.1 False Glossina austeni tsetse fly G.austeni (2014) https://genome.ucsc.edu/h/GCA_000688735.1 Glossina brevipalpis IAEA INSDC GCA_000671755.1 yes 0 1651 0 Glossina brevipalpis IAEA VectorBase 37001.0 GCA_000671755.1_Glossina_brevipalpis_1.0.3 GCA_000671755.1 False Glossina brevipalpis tsetse fly G.brevipalpis (2014) https://genome.ucsc.edu/h/GCA_000671755.1 Glossina fuscipes IAEA INSDC GCA_000671735.1 no 0 2395 0 Glossina fuscipes IAEA VectorBase 201502.0 GCA_000671735.1_Glossina_fuscipes-3.0.2 GCA_000671735.1 False Glossina fuscipes fuscipes tsetse fly G.fuscipes fuscipes (2014) https://genome.ucsc.edu/h/GCA_000671735.1 Glossina fuscipes IAEA 2018 INSDC GCA_014805625.1 yes 0 7986 0 Glossina fuscipes IAEA 2018 VectorBase 7396.0 GCF_014805625.2_Yale_Gfus_2 GCA_014805625.1 GCF_014805625.2 False Glossina fuscipes tsetse fly (v2 IAEA_lab_2018 2020) https://genome.ucsc.edu/h/GCF_014805625.2 Gallus gallus isolate bGalGal1 INSDC GCF_016699485.2 yes 0 172 41 Gallus gallus isolate bGalGal1 HostDB 9031.0 GCF_016699485.2_bGalGal1.mat.broiler.GRCg7b GCA_016699485.1 GCF_016699485.2 True Gallus gallus chicken white leghorn layer X broiler (broiler haplotype 2021 v2 2021) https://genome.ucsc.edu/h/GCF_016699485.2 Glossina morsitans Yale INSDC GCA_001077435.1 yes 0 13807 0 Glossina morsitans Yale VectorBase 37546.0 GCA_001077435.1_ASM107743v1 GCA_001077435.1 False Glossina morsitans morsitans tsetse fly G.morsitans morsitans (Yale 2014) https://genome.ucsc.edu/h/GCA_001077435.1 +Giardia muris strain Roberts-Thomson GenBank GCA_006247105.1 yes 54 0 5 Giardia muris strain Roberts-Thomson GiardiaDB 5742.0 GCA_006247105.1_UU_GM_1.1 GCA_006247105.1 False Giardia muris diplomonads (Roberts-Thomson 2019) https://genome.ucsc.edu/h/GCA_006247105.1 Gregarina niphandrodes Unknown strain GenBank GCA_000223845.4 yes 0 469 0 Gregarina niphandrodes Unknown strain CryptoDB 110365.0 GCF_000223845.1_GNI3 GCA_000223845.4 GCF_000223845.1 True Gregarina niphandrodes apicomplexans G.niphandrodes (2014) https://genome.ucsc.edu/h/GCF_000223845.1 Glossina pallidipes IAEA INSDC GCA_000688715.1 yes 0 1726 0 Glossina pallidipes IAEA VectorBase 7398.0 GCA_000688715.1_Glossina_pallidipes-1.0.3 GCA_000688715.1 False Glossina pallidipes tsetse fly G.pallidipes (2014) https://genome.ucsc.edu/h/GCA_000688715.1 Glossina palpalis IAEA INSDC GCA_000818775.1 yes 0 3926 0 Glossina palpalis IAEA VectorBase 67801.0 GCA_000818775.1_Glossina_palpalis_gambiensis-2.0.1 GCA_000818775.1 False Glossina palpalis gambiensis tsetse fly G.palpalis gambiensis (146720 2015) https://genome.ucsc.edu/h/GCA_000818775.1 @@ -495,6 +518,8 @@ Hammondia hammondi strain H.H.34 GenBank GCA_000258005.2 yes 0 14860 0 Hammondia Haemaphysalis longicornis HaeL-2018 INSDC GCA_013339765.2 yes 0 3874 11 Haemaphysalis longicornis HaeL-2018 VectorBase 44386.0 GCA_013339765.2_BIME_HaeL_1.3 GCA_013339765.2 False Haemaphysalis longicornis longhorned tick (HaeL-2018 2020) https://genome.ucsc.edu/h/GCA_013339765.2 Hamiltosporidium magnivora BE-OM-2 INSDC GCA_004325065.1 yes 0 3550 0 Hamiltosporidium magnivora BE-OM-2 MicrosporidiaDB 148818.0 GCA_004325065.1_BEOM2_v1 GCA_004325065.1 False Hamiltosporidium magnivora microsporidians H.magnivora (BE-OM-2 2019) https://genome.ucsc.edu/h/GCA_004325065.1 Hamiltosporidium magnivora IL-BN-2 INSDC GCA_004325035.1 no 0 3833 0 Hamiltosporidium magnivora IL-BN-2 MicrosporidiaDB 148818.0 GCA_004325035.1_ASM432503v1 GCA_004325035.1 False Hamiltosporidium magnivora microsporidians H.magnivora (IL-BN-2 2019) https://genome.ucsc.edu/h/GCA_004325035.1 +Histomonas meleagridis 2922-C6/04-10x INSDC GCA_020186115.1 yes 0 187 0 Histomonas meleagridis 2922-C6/04-10x TrichDB 135588.0 GCA_020186115.1_ASM2018611v1 GCA_020186115.1 False Histomonas meleagridis H.meleagridis (2922-C6/04-10x 2021) https://genome.ucsc.edu/h/GCA_020186115.1 +Histomonas meleagridis 2922-C6/04-290x INSDC GCA_020184695.1 no 0 281 0 Histomonas meleagridis 2922-C6/04-290x TrichDB 135588.0 GCA_020184695.1_ASM2018469v1 GCA_020184695.1 False Histomonas meleagridis H.meleagridis (2922-C6/04-290x 2021) https://genome.ucsc.edu/h/GCA_020184695.1 Hepatocystis sp. ex Piliocolobus tephrosceles 2019 INSDC GCA_902459845.2 yes 0 2439 0 Hepatocystis sp. ex Piliocolobus tephrosceles 2019 PlasmoDB 2600580.0 GCA_902459845.2_HEP1 GCA_902459845.2 False Hepatocystis sp. ex Piliocolobus tephrosceles apicomplexans H.sp. ex Piliocolobus tephrosceles (2020) https://genome.ucsc.edu/h/GCA_902459845.2 Haemoproteus tartakovskyi strain SISKIN1 INSDC GCA_001625125.1 yes 0 2982 0 Haemoproteus tartakovskyi strain SISKIN1 PlasmoDB 707206.0 GCA_001625125.1_ASM162512v1 GCA_001625125.1 False Haemoproteus tartakovskyi apicomplexans H.tartakovskyi (SISKIN1 2016) https://genome.ucsc.edu/h/GCA_001625125.1 Hamiltosporidium tvaerminnensis FI-OER-3-3 INSDC GCA_004325045.1 yes 0 2915 0 Hamiltosporidium tvaerminnensis FI-OER-3-3 MicrosporidiaDB 1176355.0 GCA_004325045.1_FIOER33_v1 GCA_004325045.1 False Hamiltosporidium tvaerminnensis microsporidians H.tvaerminnensis (FI-OER-3-3 2019) https://genome.ucsc.edu/h/GCA_004325045.1 @@ -533,6 +558,7 @@ Leishmania turanica strain LEM423 GenBank GCA_000441995.1 yes 0 183 36 Leishmani Mitosporidium daphniae UGP3 GenBank GCA_000760515.2 yes 0 610 0 Mitosporidium daphniae UGP3 MicrosporidiaDB 1485682.0 GCF_000760515.2_UGP1.1 GCA_000760515.2 GCF_000760515.2 True Mitosporidium daphniae microsporidians M.daphniae https://genome.ucsc.edu/h/GCF_000760515.2 Musca domestica aabys INSDC GCA_000371365.1 yes 0 20487 0 Musca domestica aabys VectorBase 7370.0 GCF_000371365.1_Musca_domestica-2.0.2 GCA_000371365.1 GCF_000371365.1 True Musca domestica house fly (aabys 2013 refseq) https://genome.ucsc.edu/h/GCF_000371365.1 Musca domestica aabys 2023 INSDC GCF_030504385.1 no 0 339 0 Musca domestica aabys 2023 VectorBase 7370.0 GCF_030504385.1_Musca_domestica.polishedcontigs.V.1.1 GCA_030504385.2 GCF_030504385.1 False Musca domestica house fly (aabys 2023) https://genome.ucsc.edu/h/GCF_030504385.1 +Monocercomonoides exilis PA203 GenBank GCA_001643675.2 yes 0 101 0 Monocercomonoides exilis PA203 GiardiaDB 2049356.0 GCA_001643675.2_ASM164367v2 GCA_001643675.2 False Monocercomonoides exilis M.exilis (PA203 2021) https://genome.ucsc.edu/h/GCA_001643675.2 Macaca fascicularis REF INSDC GCF_000364345.1 yes 0 7579 21 Macaca fascicularis REF HostDB 9541.0 GCF_000364345.1_Macaca_fascicularis_5.0 GCA_000364345.1 GCF_000364345.1 False Macaca fascicularis crab-eating macaque WashU 2013 refseq https://genome.ucsc.edu/h/GCF_000364345.1 Monilinia fructicola CPMC6 INSDC GCA_016906325.1 yes 0 99 0 Monilinia fructicola CPMC6 FungiDB 38448.0 GCA_016906325.1_ASM1690632v1 GCA_016906325.1 False Monilinia fructicola ascomycetes M.fructicola (CPMC6 2021) https://genome.ucsc.edu/h/GCA_016906325.1 Macaca mulatta isolate AG07107 INSDC GCA_003339765.3 yes 0 2916 22 Macaca mulatta isolate AG07107 HostDB 9544.0 GCF_003339765.1_Mmul_10 GCA_003339765.3 GCF_003339765.1 False Macaca mulatta Rhesus monkey (2019 U. Washington) https://genome.ucsc.edu/h/GCF_003339765.1 @@ -548,13 +574,16 @@ Neospora caninum Liverpool 2019 INSDC GCA_016097395.1 no 31 0 13 Neospora caninu Nosema ceranae BRL INSDC GCA_004919615.1 no 0 110 0 Nosema ceranae BRL MicrosporidiaDB 40302.0 GCA_004919615.1_Ncer_3.0 GCA_004919615.1 False Vairimorpha ceranae microsporidians V.ceranae (BRL 2019) https://genome.ucsc.edu/h/GCA_004919615.1 Nosema ceranae strain PA08_1199 GenBank GCA_000988165.1 no 536 0 0 Nosema ceranae strain PA08_1199 MicrosporidiaDB 40302.0 GCF_000988165.1_ASM98816v1 GCA_000988165.1 GCF_000988165.1 True Vairimorpha ceranae microsporidians N.ceranae https://genome.ucsc.edu/h/GCF_000988165.1 Nematocida displodere strain JUm2807 GenBank GCA_001642395.1 yes 40 0 0 Nematocida displodere strain JUm2807 MicrosporidiaDB 1805483.0 GCA_001642395.1_ASM164239v1 GCA_001642395.1 False Nematocida displodere microsporidians N.displodere (JUm2807 2016) https://genome.ucsc.edu/h/GCA_001642395.1 +Naegleria fowleri ATCC 30863 GenBank GCA_000499105.1 no 0 1124 0 Naegleria fowleri ATCC 30863 AmoebaDB 5763.0 GCA_000499105.1_Naegleria_fowleri_1.0 GCA_000499105.1 False Naegleria fowleri brain-eating amoeba (ATCC 30863 2013) https://genome.ucsc.edu/h/GCA_000499105.1 Naegleria fowleri strain ATCC 30894 INSDC GCA_008403515.1 no 0 81 0 Naegleria fowleri strain ATCC 30894 AmoebaDB 5763.0 GCF_008403515.1_ASM840351v1 GCA_008403515.1 GCF_008403515.1 False Naegleria fowleri brain-eating amoeba (ATCC 30894 2019) https://genome.ucsc.edu/h/GCF_008403515.1 +Naegleria fowleri strain Ty INSDC GCA_014843625.1 yes 0 0 37 Naegleria fowleri strain Ty AmoebaDB 5763.0 GCA_014843625.1_ASM1484362v1 GCA_014843625.1 False Naegleria fowleri brain-eating amoeba (Ty 2020) https://genome.ucsc.edu/h/GCA_014843625.1 Nakaseomyces glabratus BG2 INSDC GCA_014217725.1 no 0 0 13 Nakaseomyces glabratus BG2 FungiDB 5478.0 GCA_014217725.1_ASM1421772v1 GCA_014217725.1 False Nakaseomyces glabratus budding yeast N.glabratus (BG2 2020) https://genome.ucsc.edu/h/GCA_014217725.1 Nakaseomyces glabratus BG3993 INSDC GCA_020450195.1 no 0 0 13 Nakaseomyces glabratus BG3993 FungiDB 5478.0 GCA_020450195.1_ASM2045019v1 GCA_020450195.1 False Nakaseomyces glabratus budding yeast N.glabratus (BG3993 2021) https://genome.ucsc.edu/h/GCA_020450195.1 Nakaseomyces glabratus CBS138 2020 INSDC GCA_010111755.1 no 0 0 13 Nakaseomyces glabratus CBS138 2020 FungiDB 5478.0 GCF_010111755.1_ASM1011175v1 GCA_010111755.1 GCF_010111755.1 True Nakaseomyces glabratus budding yeast N.glabratus (ATCC 2001 2020) https://genome.ucsc.edu/h/GCF_010111755.1 Nakaseomyces glabratus DSY562 INSDC GCA_002219185.1 no 0 5 13 Nakaseomyces glabratus DSY562 FungiDB 5478.0 GCA_002219185.1_ASM221918v1 GCA_002219185.1 False Nakaseomyces glabratus budding yeast N.glabratus (DSY562 2017) https://genome.ucsc.edu/h/GCA_002219185.1 Nosema granulosis Ou3-Ou53 INSDC GCA_015832245.1 yes 0 1754 0 Nosema granulosis Ou3-Ou53 MicrosporidiaDB 83296.0 GCA_015832245.1_ASM1583224v1 GCA_015832245.1 False Nosema granulosis microsporidians N.granulosis (Ou3-Ou53 2020) https://genome.ucsc.edu/h/GCA_015832245.1 Naegleria lovaniensis strain ATCC 30569 INSDC GCA_003324165.2 yes 0 109 0 Naegleria lovaniensis strain ATCC 30569 AmoebaDB 51637.0 GCF_003324165.1_Nlova_2.1 GCA_003324165.2 GCF_003324165.1 False Naegleria lovaniensis N.lovaniensis (ATCC 30569 2021) https://genome.ucsc.edu/h/GCF_003324165.1 +Naegleria lovaniensis NL_76_15_250 INSDC GCA_022530875.1 no 0 199 0 Naegleria lovaniensis NL_76_15_250 AmoebaDB 51637.0 GCA_022530875.1_ASM2253087v1 GCA_022530875.1 False Naegleria lovaniensis N.lovaniensis (NL_76_15_250 2022) https://genome.ucsc.edu/h/GCA_022530875.1 Nematocida major JUm2507 INSDC GCA_021653875.1 yes 0 111 0 Nematocida major JUm2507 MicrosporidiaDB 1912982.0 GCF_021653875.1_ASM2165387v1 GCA_021653875.1 GCF_021653875.1 True Nematocida major microsporidians N.major (JUm2507 2022) https://genome.ucsc.edu/h/GCF_021653875.1 Plasmodium adleri G01 GenBank GCA_900097015.1 yes 68 0 14 Plasmodium adleri G01 PlasmoDB 880535.0 GCF_900097015.1_PADLG01 GCA_900097015.1 GCF_900097015.1 True Plasmodium sp. gorilla clade G2 apicomplexans P.sp. gorilla clade G2 (2018) https://genome.ucsc.edu/h/GCF_900097015.1 Podosphaera aphanis DRCT72020 INSDC GCA_022627015.2 yes 0 12702 0 Podosphaera aphanis DRCT72020 FungiDB 79252.0 GCA_022627015.2_ASM2262701v2 GCA_022627015.2 False Podosphaera aphanis powdery mildews (DRCT72020 2022) https://genome.ucsc.edu/h/GCA_022627015.2 @@ -563,10 +592,13 @@ Phialophora attinorum CBS 131958 INSDC GCF_001299255.1 yes 0 131 0 Phialophora a Plasmodium billcollinsi G01 GenBank GCA_900257145.2 yes 0 0 14 Plasmodium billcollinsi G01 PlasmoDB 720590.0 GCA_900257145.2_Plasmodium_billcollinsi GCA_900257145.2 False Plasmodium sp. DRC-Itaito apicomplexans P.sp. DRC-Itaito (2020) https://genome.ucsc.edu/h/GCA_900257145.2 Plasmodium blacklocki G01 GenBank GCA_900097035.1 yes 83 0 14 Plasmodium blacklocki G01 PlasmoDB 880536.0 GCA_900097035.1_PBLACG01 GCA_900097035.1 False Plasmodium sp. gorilla clade G3 apicomplexans P.sp. gorilla clade G3 (2018) https://genome.ucsc.edu/h/GCA_900097035.1 Plasmodium brasilianum strain Bolivian I INSDC GCA_023973825.1 yes 0 29 14 Plasmodium brasilianum strain Bolivian I PlasmoDB 5824.0 GCF_023973825.1_ASM2397382v1 GCA_023973825.1 GCF_023973825.1 False Plasmodium brasilianum apicomplexans P.brasilianum (Bolivian I 2022) https://genome.ucsc.edu/h/GCF_023973825.1 +Phytophthora cactorum 10300 INSDC GCA_003287315.1 yes 0 4623 0 Phytophthora cactorum 10300 FungiDB 29920.0 GCA_003287315.1_Pcac_10300_v1 GCA_003287315.1 False Phytophthora cactorum downy mildews (10300 2018) https://genome.ucsc.edu/h/GCA_003287315.1 Pneumocystis canis CanA INSDC GCA_017788925.1 yes 0 33 0 Pneumocystis canis CanA FungiDB 2698477.0 GCA_017788925.1_ASM1778892v1 GCA_017788925.1 False Pneumocystis canis ascomycetes P.canis (CanA 2021) https://genome.ucsc.edu/h/GCA_017788925.1 +Phytophthora cinnamomi GKB4 INSDC GCA_018691715.1 yes 0 133 0 Phytophthora cinnamomi GKB4 FungiDB 4785.0 GCA_018691715.1_ASM1869171v1 GCA_018691715.1 False Phytophthora cinnamomi downy mildews (GKB4 2021) https://genome.ucsc.edu/h/GCA_018691715.1 Plasmodium coatneyi Hackeri GenBank GCA_001680005.1 yes 0 0 14 Plasmodium coatneyi Hackeri PlasmoDB 208452.0 GCF_001680005.1_ASM168000v1 GCA_001680005.1 GCF_001680005.1 True Plasmodium coatneyi apicomplexans P.coatneyi (Hackeri 2016) https://genome.ucsc.edu/h/GCF_001680005.1 Podospora comata strain T mat+ INSDC GCA_900290415.1 yes 0 0 7 Podospora comata strain T mat+ FungiDB 48703.0 GCA_900290415.1_version1 GCA_900290415.1 False Podospora comata ascomycetes P.comata (T 2018) https://genome.ucsc.edu/h/GCA_900290415.1 Paratrypanosoma confusum CUL13 GenBank GCA_002921335.1 yes 1922 266 0 Paratrypanosoma confusum CUL13 TriTrypDB 1470209.0 GCA_002921335.1_ASM292133v1 GCA_002921335.1 False Paratrypanosoma confusum Paratrypanosoma confusum (CUL13MS 2018) https://genome.ucsc.edu/h/GCA_002921335.1 +Peronospora effusa R13 INSDC GCA_003843895.1 yes 0 784 0 Peronospora effusa R13 FungiDB 542832.0 GCA_003843895.1_ASM384389v1 GCA_003843895.1 False Peronospora effusa downy mildews (R13 2018) https://genome.ucsc.edu/h/GCA_003843895.1 Penicillium expansum d1 INSDC GCA_000769735.1 yes 0 270 0 Penicillium expansum d1 FungiDB 27334.0 GCA_000769735.1_ASM76973v1 GCA_000769735.1 False Penicillium expansum ascomycetes P.expansum (d1 2014) https://genome.ucsc.edu/h/GCA_000769735.1 Plasmodium falciparum 7G8 2019 INSDC GCA_009761555.1 no 0 20 0 Plasmodium falciparum 7G8 2019 PlasmoDB 5833.0 GCA_009761555.1_7G8_v1 GCA_009761555.1 False Plasmodium falciparum malaria parasite P. falciparum (7G8 2019) https://genome.ucsc.edu/h/GCA_009761555.1 Plasmodium falciparum CD01 GenBank GCA_900617135.1 no 5 0 14 Plasmodium falciparum CD01 PlasmoDB 5833.0 GCA_900617135.1_PfCD01-2 GCA_900617135.1 False Plasmodium falciparum malaria parasite P. falciparum (2018) https://genome.ucsc.edu/h/GCA_900617135.1 @@ -599,10 +631,14 @@ Pseudoloma neurophilia strain MK1 GenBank GCA_001432165.1 yes 1603 0 0 Pseudolom Pneumocystis oryctolagi CS1 INSDC GCA_017311285.1 yes 0 38 0 Pneumocystis oryctolagi CS1 FungiDB 42067.0 GCA_017311285.1_Pneumocystis_oryctolagi_MERGE_1.1 GCA_017311285.1 False Pneumocystis oryctolagi ascomycetes P.oryctolagi (RABM 2021) https://genome.ucsc.edu/h/GCA_017311285.1 Plasmodium ovale curtisi GH01 GenBank GCA_900090035.2 yes 638 0 14 Plasmodium ovale curtisi GH01 PlasmoDB 36330.0 GCA_900090035.2_PocGH01 GCA_900090035.2 False Plasmodium ovale malaria parasite P. ovale (2016) https://genome.ucsc.edu/h/GCA_900090035.2 Plasmodium ovale wallikeri PowCR01 INSDC GCA_900090025.2 no 0 763 14 Plasmodium ovale wallikeri PowCR01 PlasmoDB 36330.0 GCA_900090025.2_PowCR01 GCA_900090025.2 False Plasmodium ovale malaria parasite P. ovale (2016) https://genome.ucsc.edu/h/GCA_900090025.2 +Phytophthora palmivora var. palmivora strain sbr112.9 GenBank GCA_002911725.1 yes 24809 0 0 Phytophthora palmivora var. palmivora strain sbr112.9 FungiDB 4796.0 GCA_002911725.1_ASM291172v1 GCA_002911725.1 False Phytophthora palmivora downy mildews (sbr112.9 2018) https://genome.ucsc.edu/h/GCA_002911725.1 Phlebotomus papatasi Israel INSDC GCA_000262795.1 no 0 106826 0 Phlebotomus papatasi Israel VectorBase 29031.0 GCA_000262795.1_Ppap_1.0 GCA_000262795.1 False Phlebotomus papatasi fly P.papatasi (2012) https://genome.ucsc.edu/h/GCA_000262795.1 Phlebotomus papatasi M1 INSDC GCF_024763615.1 yes 0 640 5 Phlebotomus papatasi M1 VectorBase 29031.0 GCF_024763615.1_Ppap_2.1 GCA_024763615.2 GCF_024763615.1 False Phlebotomus papatasi fly P.papatasi (M1 2022) https://genome.ucsc.edu/h/GCF_024763615.1 Pyricularia pennisetigena Br36 INSDC GCA_004337985.1 yes 0 103 5 Pyricularia pennisetigena Br36 FungiDB 1578925.0 GCF_004337985.1_PpBr36 GCA_004337985.1 GCF_004337985.1 True Pyricularia pennisetigena ascomycetes P.pennisetigena (Br36 2019 refseq) https://genome.ucsc.edu/h/GCF_004337985.1 +Phytophthora plurivora AV1007 GenBank GCA_002247145.1 yes 1897 0 0 Phytophthora plurivora AV1007 FungiDB 639000.0 GCA_002247145.1_Plurivora_assembly_v1.fn GCA_002247145.1 False Phytophthora plurivora downy mildews (AV1007 2017) https://genome.ucsc.edu/h/GCA_002247145.1 Plasmodium praefalciparum strain G01 INSDC GCA_900095595.1 yes 0 39 14 Plasmodium praefalciparum strain G01 PlasmoDB 880534.0 GCA_900095595.1_PPRFG01 GCA_900095595.1 False Plasmodium sp. gorilla clade G1 apicomplexans P.sp. gorilla clade G1 (2018) https://genome.ucsc.edu/h/GCA_900095595.1 +Phytophthora ramorum 14567 INSDC GCA_020800235.1 no 0 27 0 Phytophthora ramorum 14567 FungiDB 164328.0 GCA_020800235.1_ASM2080023v1 GCA_020800235.1 False Phytophthora ramorum sudden oak death agent (14567 PR-15-019 primary hap 2021) https://genome.ucsc.edu/h/GCA_020800235.1 +Phytophthora ramorum strain Pr102 GenBank GCA_020800215.1 yes 0 28 0 Phytophthora ramorum strain Pr102 FungiDB 164328.0 GCA_020800215.1_PR-102_v3_p GCA_020800215.1 False Phytophthora ramorum sudden oak death agent (Pr-102 primary hap 2021) https://genome.ucsc.edu/h/GCA_020800215.1 Plasmodium reichenowi CDC GenBank GCA_000723685.1 yes 356 0 14 Plasmodium reichenowi CDC PlasmoDB 5854.0 GCF_000723685.1_PREICH001 GCA_000723685.1 GCF_000723685.1 True Plasmodium reichenowi apicomplexans P.reichenowi (CDC 2014) https://genome.ucsc.edu/h/GCF_000723685.1 Plasmodium reichenowi G01 GenBank GCA_900097025.1 no 34 0 14 Plasmodium reichenowi G01 PlasmoDB 5854.0 GCA_900097025.1_PRG01 GCA_900097025.1 False Plasmodium reichenowi apicomplexans P.reichenowi (2018) https://genome.ucsc.edu/h/GCA_900097025.1 Plasmodium relictum SGS1-like GenBank GCA_900005765.1 yes 460 0 14 Plasmodium relictum SGS1-like PlasmoDB 85471.0 GCF_900005765.1_PRELSG GCA_900005765.1 GCF_900005765.1 False Plasmodium relictum apicomplexans P.relictum (SGS1 2016) https://genome.ucsc.edu/h/GCF_900005765.1 @@ -686,6 +722,7 @@ Trypanosoma melophagium St. Kilda INSDC GCA_022059095.1 yes 0 64 0 Trypanosoma m Trichophyton mentagrophytes TIMM 2789 INSDC GCA_003118255.1 yes 0 16543 0 Trichophyton mentagrophytes TIMM 2789 FungiDB 523103.0 GCA_003118255.1_ABySS_70bp_45k_152cov_v1 GCA_003118255.1 False Trichophyton mentagrophytes ascomycetes T.mentagrophytes (TIMM 2789 2018) https://genome.ucsc.edu/h/GCA_003118255.1 Tubulinosema ratisbonensis Franzen INSDC GCA_004000155.1 yes 0 952 0 Tubulinosema ratisbonensis Franzen MicrosporidiaDB 291195.0 GCA_004000155.1_ASM400015v1 GCA_004000155.1 False Tubulinosema ratisbonensis microsporidians T.ratisbonensis (Franzen 2019) https://genome.ucsc.edu/h/GCA_004000155.1 Trichoderma reesei QM6a 2017 INSDC GCA_002006585.1 no 0 0 7 Trichoderma reesei QM6a 2017 FungiDB 431241.0 GCA_002006585.1_ASM200658v1 GCA_002006585.1 False Trichoderma reesei QM6a ascomycetes T.reesei (QM6a 2017) https://genome.ucsc.edu/h/GCA_002006585.1 +Trichomonas tenax strain NIH4 ATCC 30207 INSDC GCA_900231805.1 yes 0 4161 0 Trichomonas tenax strain NIH4 ATCC 30207 TrichDB 43075.0 GCA_900231805.1_PRJEB22701 GCA_900231805.1 False Trichomonas tenax trichomonads (NIH4 ATCC 30207 2019) https://genome.ucsc.edu/h/GCA_900231805.1 Trypanosoma theileri isolate Edinburgh GenBank GCA_002087225.1 yes 253 0 0 Trypanosoma theileri isolate Edinburgh TriTrypDB 67003.0 GCF_002087225.1_Tth_v3 GCA_002087225.1 GCF_002087225.1 True Trypanosoma theileri Trypanosoma theileri (Edinburgh 2017 kinetoplastids) https://genome.ucsc.edu/h/GCF_002087225.1 Trichomonas vaginalis G3 2022 INSDC GCA_026262505.1 yes 0 212 6 Trichomonas vaginalis G3 2022 TrichDB 412133.0 GCF_026262505.1_NYU_TvagG3_2 GCA_026262505.1 GCF_026262505.1 True Trichomonas vaginalis G3 Trichomonas vaginalis (G3 2022) https://genome.ucsc.edu/h/GCF_026262505.1 Verruconis gallopava strain CBS 43764 INSDC GCA_000836295.1 yes 0 367 0 Verruconis gallopava strain CBS 43764 FungiDB 253628.0 GCF_000836295.1_O_gall_CBS43764 GCA_000836295.1 GCF_000836295.1 True Verruconis gallopava ascomycetes V.gallopava https://genome.ucsc.edu/h/GCF_000836295.1