From 2b98f8dbae4e7224ddcc48b27ea9758276824ae3 Mon Sep 17 00:00:00 2001
From: hunterckx <118154470+hunterckx@users.noreply.github.com>
Date: Sat, 16 Nov 2024 17:24:58 -0800
Subject: [PATCH] feat: relabel "organisms" to "genomes" (#177)

---
 .../Section/components/SectionHero/sectionHero.tsx          | 2 +-
 app/components/Home/content/sectionSubHero.mdx              | 2 +-
 .../brc-analytics-catalog/common/viewModelBuilders.ts       | 4 ++--
 pages/_app.tsx                                              | 2 +-
 routes/constants.ts                                         | 2 +-
 site-config/brc-analytics/local/config.ts                   | 2 +-
 site-config/brc-analytics/local/index/genomeEntityConfig.ts | 6 +++---
 7 files changed, 10 insertions(+), 10 deletions(-)

diff --git a/app/components/Home/components/Section/components/SectionHero/sectionHero.tsx b/app/components/Home/components/Section/components/SectionHero/sectionHero.tsx
index 0069043..21faa17 100644
--- a/app/components/Home/components/Section/components/SectionHero/sectionHero.tsx
+++ b/app/components/Home/components/Section/components/SectionHero/sectionHero.tsx
@@ -32,7 +32,7 @@ export const SectionHero = (): JSX.Element => {
                   annotations and functional insights into disease-causing
                   organisms and their carriers
                 </Subhead>
-                <Button {...BUTTON_PROPS} href={ROUTES.ORGANISMS}>
+                <Button {...BUTTON_PROPS} href={ROUTES.GENOMES}>
                   Get started
                 </Button>
               </SubHeadline>
diff --git a/app/components/Home/content/sectionSubHero.mdx b/app/components/Home/content/sectionSubHero.mdx
index da94f3a..0512771 100644
--- a/app/components/Home/content/sectionSubHero.mdx
+++ b/app/components/Home/content/sectionSubHero.mdx
@@ -1,5 +1,5 @@
 BRC Analytics is your new destination for analysis of biological
 data related to pathogens. Building on the foundation of VEuPathDb
 the platform will provide access and analysis capabilities for
-[785 eukaryotic pathogens](/data/organisms), hosts, and vectors. The functionality will
+[785 eukaryotic pathogens](/data/genomes), hosts, and vectors. The functionality will
 be developed and made available incrementally over the [following months](/roadmap).
diff --git a/app/viewModelBuilders/catalog/brc-analytics-catalog/common/viewModelBuilders.ts b/app/viewModelBuilders/catalog/brc-analytics-catalog/common/viewModelBuilders.ts
index d45adc9..c364d2c 100644
--- a/app/viewModelBuilders/catalog/brc-analytics-catalog/common/viewModelBuilders.ts
+++ b/app/viewModelBuilders/catalog/brc-analytics-catalog/common/viewModelBuilders.ts
@@ -38,7 +38,7 @@ export const buildAnalyzeGenome = (
   return {
     analyze: {
       label: "Analyze",
-      url: rowId ? `${ROUTES.ORGANISMS}/${rowId}` : "",
+      url: rowId ? `${ROUTES.GENOMES}/${rowId}` : "",
     },
     views: [
       ...(ucscBrowserUrl
@@ -320,7 +320,7 @@ function getGenomeEntityChooseAnalysisMethodBreadcrumbs(
   genome: BRCDataCatalogGenome
 ): Breadcrumb[] {
   return [
-    { path: ROUTES.ORGANISMS, text: "Organisms" },
+    { path: ROUTES.GENOMES, text: "Genomes" },
     { path: "", text: `${genome.organism}` },
     { path: "", text: "Choose Analysis Methods" },
   ];
diff --git a/pages/_app.tsx b/pages/_app.tsx
index 3e99414..3844bc2 100644
--- a/pages/_app.tsx
+++ b/pages/_app.tsx
@@ -20,7 +20,7 @@ import { StyledFooter } from "../app/components/Layout/components/Footer/footer.
 import { config } from "../app/config/config";
 import { mergeAppTheme } from "../app/theme/theme";
 
-const DEFAULT_ENTITY_LIST_TYPE = "organisms";
+const DEFAULT_ENTITY_LIST_TYPE = "genomes";
 
 export interface PageProps extends AzulEntitiesStaticResponse {
   pageTitle?: string;
diff --git a/routes/constants.ts b/routes/constants.ts
index c44740a..05eb80a 100644
--- a/routes/constants.ts
+++ b/routes/constants.ts
@@ -1,5 +1,5 @@
 export const ROUTES = {
   ABOUT: "/about",
-  ORGANISMS: "/data/organisms",
+  GENOMES: "/data/genomes",
   ROADMAP: "/roadmap",
 };
diff --git a/site-config/brc-analytics/local/config.ts b/site-config/brc-analytics/local/config.ts
index 114f293..159fd80 100644
--- a/site-config/brc-analytics/local/config.ts
+++ b/site-config/brc-analytics/local/config.ts
@@ -50,7 +50,7 @@ export function makeConfig(browserUrl: string): SiteConfig {
           undefined,
           [
             { label: "About", url: ROUTES.ABOUT },
-            { label: "Datasets", url: ROUTES.ORGANISMS },
+            { label: "Datasets", url: ROUTES.GENOMES },
             { label: "Roadmap", url: ROUTES.ROADMAP },
           ],
           undefined,
diff --git a/site-config/brc-analytics/local/index/genomeEntityConfig.ts b/site-config/brc-analytics/local/index/genomeEntityConfig.ts
index cc61338..42d2bf5 100644
--- a/site-config/brc-analytics/local/index/genomeEntityConfig.ts
+++ b/site-config/brc-analytics/local/index/genomeEntityConfig.ts
@@ -80,10 +80,10 @@ export const genomeEntityConfig: BRCEntityConfig<BRCDataCatalogGenome> = {
     ],
   },
   exploreMode: EXPLORE_MODE.CS_FETCH_CS_FILTERING,
-  explorerTitle: "Organisms",
+  explorerTitle: "Genomes",
   getId: getGenomeId,
   getTitle: getGenomeTitle,
-  label: "Organisms",
+  label: "Genomes",
   list: {
     columns: [
       {
@@ -226,6 +226,6 @@ export const genomeEntityConfig: BRCEntityConfig<BRCDataCatalogGenome> = {
     enableTab: false,
     listHero,
   },
-  route: "organisms",
+  route: "genomes",
   staticLoadFile: "files/out/genomes.json",
 };