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cicd.yml
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name: 'CI/CD'
on:
workflow_dispatch:
pull_request:
push:
branches:
- 'master'
paths:
- 'Makefile'
- 'source/**'
- 'source/Bivar/**'
- 'source/ISO_Varying_String/**'
- 'source/gslODEInitVal2/**'
- 'source/NSWC/**'
- 'source/pFq/**'
- 'source/gslSpecFuncApprox/**'
- 'source/FFTlog/**'
- 'perl/**'
- 'perl/File/**'
- 'perl/Galacticus/**'
- 'perl/Galacticus/Launch/**'
- 'perl/Galacticus/Constraints/**'
- 'perl/Galacticus/Build/**'
- 'perl/Galacticus/Build/Components/**'
- 'perl/Galacticus/Build/Components/Classes/**'
- 'perl/Galacticus/Build/Components/Implementations/**'
- 'perl/Galacticus/Build/Components/Properties/**'
- 'perl/Galacticus/Build/Components/TreeNodes/**'
- 'perl/Galacticus/Build/Components/Hierarchy/**'
- 'perl/Galacticus/Build/SourceTree/**'
- 'perl/Galacticus/Build/SourceTree/Parse/**'
- 'perl/Galacticus/Build/SourceTree/Analyze/**'
- 'perl/Galacticus/Build/SourceTree/Process/**'
- 'perl/Galacticus/Build/SourceTree/Process/FunctionClass/**'
- 'perl/List/**'
- 'perl/Sort/**'
- 'perl/LaTeX/**'
- 'perl/IO/**'
- 'perl/IO/Compress/**'
- 'perl/System/**'
- 'perl/Fortran/**'
- 'scripts/build/**'
- 'schema/**'
concurrency:
group: cicd-${{ github.ref }}
cancel-in-progress: true
defaults:
run:
shell: bash
jobs:
# Build and deploy
## Linux
### Static executable and test codes
Build-Executable-Linux:
runs-on: ubuntu-latest
container: ghcr.io/galacticusorg/buildenv:latest
steps:
- run: echo "The job was automatically triggered by a ${{ github.event_name }} event."
- run: echo "This job is now running on a ${{ runner.os }} server."
- run: echo "The name of the branch is ${{ github.ref }} and the repository is ${{ github.repository }}."
- name: Check out repository code
uses: actions/checkout@v4
- name: Check out repository analysis-perl
uses: actions/checkout@v4
with:
repository: galacticusorg/analysis-perl
path: analysis-perl
- run: echo "The ${{ github.repository }} repository has been cloned to the runner."
- name: "Set environmental variables"
run: |
echo "GALACTICUS_EXEC_PATH=$GITHUB_WORKSPACE" >> $GITHUB_ENV
echo "GALACTICUS_FCFLAGS=$GALACTICUS_FCFLAGS -static" >> $GITHUB_ENV
echo "GALACTICUS_ANALYSIS_PERL_PATH=$GITHUB_WORKSPACE/analysis-perl" >> $GITHUB_ENV
echo "NODE_OPTIONS=--max_old_space_size=4096" >> $GITHUB_ENV
- name: Build the code
run: |
cd $GALACTICUS_EXEC_PATH
git config --global --add safe.directory $GALACTICUS_EXEC_PATH
export BUILDPATH=./work/build
set -o pipefail
make GALACTICUS_BUILD_OPTION=compileprof -j2 all 2>&1 | tee build.log
set +o pipefail
chmod u=wrx ./scripts/build/buildProfiler.pl
./scripts/build/buildProfiler.pl build.log buildProfile.html --durationMinimum 20
- name: Upload Galacticus executable
uses: actions/upload-artifact@v3
with:
name: galacticus-exec
path: 'Galacticus.exe'
- name: Upload test code executables
uses: actions/upload-artifact@v3
with:
name: test-execs
path: 'tests.*.exe'
- name: Upload build profile
uses: actions/upload-artifact@v3
with:
name: build-profile
path: 'buildProfile.html'
- run: echo "This job's status is ${{ job.status }}."
### Non-static executable
Build-Executable-Linux-Non-Static:
runs-on: ubuntu-latest
container: ghcr.io/galacticusorg/buildenv:latest
steps:
- run: echo "The job was automatically triggered by a ${{ github.event_name }} event."
- run: echo "This job is now running on a ${{ runner.os }} server."
- run: echo "The name of the branch is ${{ github.ref }} and the repository is ${{ github.repository }}."
- name: Check out repository code
uses: actions/checkout@v4
- name: Check out repository analysis-perl
uses: actions/checkout@v4
with:
repository: galacticusorg/analysis-perl
path: analysis-perl
- run: echo "The ${{ github.repository }} repository has been cloned to the runner."
- name: "Set environmental variables"
run: |
echo "GALACTICUS_EXEC_PATH=$GITHUB_WORKSPACE" >> $GITHUB_ENV
echo "GALACTICUS_ANALYSIS_PERL_PATH=$GITHUB_WORKSPACE/analysis-perl" >> $GITHUB_ENV
echo "NODE_OPTIONS=--max_old_space_size=4096" >> $GITHUB_ENV
- name: Build the code
run: |
cd $GALACTICUS_EXEC_PATH
git config --global --add safe.directory $GALACTICUS_EXEC_PATH
export BUILDPATH=./work/build
set -o pipefail
make -j2 Galacticus.exe 2>&1 | tee build.log
set +o pipefail
! grep -n -C 5 Error: build.log
! grep -n -C 5 Warning: build.log
! grep -v 'is up to date' build.log | grep -n -C 5 make:
- name: Upload Galacticus executable
uses: actions/upload-artifact@v3
with:
name: galacticus-exec-non-static
path: 'Galacticus.exe'
- run: echo "This job's status is ${{ job.status }}."
### Executable instrumented
Build-Executables-Instrumented-Linux:
runs-on: ubuntu-latest
container: ghcr.io/galacticusorg/buildenv:latest
steps:
- run: echo "The job was automatically triggered by a ${{ github.event_name }} event."
- run: echo "This job is now running on a ${{ runner.os }} server."
- run: echo "The name of the branch is ${{ github.ref }} and the repository is ${{ github.repository }}."
- name: Check out repository code
uses: actions/checkout@v4
- run: echo "The ${{ github.repository }} repository has been cloned to the runner."
- name: "Set environmental variables"
run: |
echo "GALACTICUS_EXEC_PATH=$GITHUB_WORKSPACE" >> $GITHUB_ENV
echo "GALACTICUS_DATA_PATH=$GITHUB_WORKSPACE/datasets" >> $GITHUB_ENV
- name: Build the code
run: |
cd $GALACTICUS_EXEC_PATH
git config --global --add safe.directory $GALACTICUS_EXEC_PATH
export GALACTICUS_FCFLAGS="$GALACTICUS_FCFLAGS -pg"
export GALACTICUS_CFLAGS="$GALACTICUS_CFLAGS -pg"
export GALACTICUS_CPPFLAGS="$GALACTICUS_CPPFLAGS -pg"
make -j2 Galacticus.exe
- name: Upload executables
uses: actions/upload-artifact@v3
with:
name: galacticus-exec-instrumented
path: 'Galacticus.exe'
- run: echo "This job's status is ${{ job.status }}."
### Executable MPI
Build-Executables-MPI-Linux:
runs-on: ubuntu-latest
container: ghcr.io/galacticusorg/buildenv:latest
steps:
- run: echo "The job was automatically triggered by a ${{ github.event_name }} event."
- run: echo "This job is now running on a ${{ runner.os }} server."
- run: echo "The name of the branch is ${{ github.ref }} and the repository is ${{ github.repository }}."
- name: Check out repository code
uses: actions/checkout@v4
- run: echo "The ${{ github.repository }} repository has been cloned to the runner."
- name: "Set environmental variables"
run: |
echo "GALACTICUS_EXEC_PATH=$GITHUB_WORKSPACE" >> $GITHUB_ENV
echo "GALACTICUS_DATA_PATH=$GITHUB_WORKSPACE/datasets" >> $GITHUB_ENV
- name: Build the code
run: |
cd $GALACTICUS_EXEC_PATH
git config --global --add safe.directory $GALACTICUS_EXEC_PATH
make -j2 GALACTICUS_BUILD_OPTION=MPI Galacticus.exe tests.MPI.exe tests.radiative_transfer.atomic_matter.state_solver.exe
- name: Upload Galacticus executable
uses: actions/upload-artifact@v3
with:
name: galacticus-exec-MPI
path: 'Galacticus.exe'
- name: Upload test code executables
uses: actions/upload-artifact@v3
with:
name: test-execs-MPI
path: 'tests.*.exe'
- run: echo "This job's status is ${{ job.status }}."
### Executable debugging
Build-Executables-Debugging-Linux:
runs-on: ubuntu-latest
container: ghcr.io/galacticusorg/buildenv:latest
steps:
- run: echo "The job was automatically triggered by a ${{ github.event_name }} event."
- run: echo "This job is now running on a ${{ runner.os }} server."
- run: echo "The name of the branch is ${{ github.ref }} and the repository is ${{ github.repository }}."
- name: Check out repository code
uses: actions/checkout@v4
- run: echo "The ${{ github.repository }} repository has been cloned to the runner."
- name: "Set environmental variables"
run: |
echo "GALACTICUS_EXEC_PATH=$GITHUB_WORKSPACE" >> $GITHUB_ENV
echo "GALACTICUS_DATA_PATH=$GITHUB_WORKSPACE/datasets" >> $GITHUB_ENV
echo "GALACTICUS_FCFLAGS+=\ -DDEBUGGING" >> $GITHUB_ENV
- name: Build the code
run: |
cd $GALACTICUS_EXEC_PATH
git config --global --add safe.directory $GALACTICUS_EXEC_PATH
make -j2 Galacticus.exe tests.debugging.exe
- name: Upload test code executables
uses: actions/upload-artifact@v3
with:
name: test-execs-debugging
path: 'tests.*.exe'
- run: echo "This job's status is ${{ job.status }}."
### Library
Build-Library-Linux:
runs-on: ubuntu-latest
container: ghcr.io/galacticusorg/buildenv:latest
steps:
- run: echo "The job was automatically triggered by a ${{ github.event_name }} event."
- run: echo "This job is now running on a ${{ runner.os }} server."
- run: echo "The name of the branch is ${{ github.ref }} and the repository is ${{ github.repository }}."
- name: Check out repository code
uses: actions/checkout@v4
- run: echo "The ${{ github.repository }} repository has been cloned to the runner."
- name: "Set environmental variables"
run: |
echo "GALACTICUS_EXEC_PATH=$GITHUB_WORKSPACE" >> $GITHUB_ENV
echo "NODE_OPTIONS=--max-old-space-size=5120" >> $GITHUB_ENV
echo "NODE_OPTIONS=--max_old_space_size=4096" >> $GITHUB_ENV
- name: Build the code
run: |
cd $GALACTICUS_EXEC_PATH
git config --global --add safe.directory $GALACTICUS_EXEC_PATH
make -j2 GALACTICUS_BUILD_OPTION=lib libgalacticus.so
- name: Package the code
run: |
cd $GALACTICUS_EXEC_PATH
git config --global --add safe.directory $GALACTICUS_EXEC_PATH
mkdir galacticus
mkdir galacticus/lib
mkdir galacticus/python
# Find all dynamic libraries needed (filtering out some system libs) and copy to our folder.
ldd libgalacticus.so | awk '{if (NF == 4) print $3}' | grep -v -e /libc.so -e /libdl.so -e /libm.so -e /libpthread.so -e /librt.so | xargs -n 1 -i{} cp {} galacticus/lib/
mv galacticus.py galacticus/python/
mv libgalacticus.so galacticus/lib/
tar cvfj libgalacticus.tar.bz2 galacticus
- name: Upload library
uses: actions/upload-artifact@v3
with:
name: galacticus-library
path: 'libgalacticus.tar.bz2'
- run: echo "This job's status is ${{ job.status }}."
### Docker image
Build-Docker-Linux:
runs-on: ubuntu-latest
permissions:
packages: write
steps:
- name: "Detect PR build"
id: detectBranch
run: |
if [[ "${{ github.event_name }}" == "pull_request" ]]; then
echo Running on a PR - will build, but not push
echo "doPush=false" >> "$GITHUB_OUTPUT"
else
echo Running on a non-PR - will build and push
echo "doPush=true" >> "$GITHUB_OUTPUT"
fi
- name: Login to GitHub Container Registry
uses: docker/login-action@v3
with:
registry: ghcr.io
username: ${{ github.repository_owner }}
password: ${{ secrets.GITHUB_TOKEN }}
- name: Extract metadata (tags, labels) for Docker
id: meta
uses: docker/metadata-action@v5
with:
images: galacticusorg/galacticus
- name: Build and push Docker image
uses: docker/build-push-action@v5
with:
push: ${{ steps.detectBranch.outputs.doPush }}
tags: ghcr.io/galacticusorg/galacticus:latest
labels: ${{ steps.meta.outputs.labels }}
### Documentation
Build-Documentation-Linux:
runs-on: ubuntu-latest
container: ghcr.io/galacticusorg/buildenv:latest
steps:
- run: echo "The job was automatically triggered by a ${{ github.event_name }} event."
- run: echo "This job is now running on a ${{ runner.os }} server."
- run: echo "The name of the branch is ${{ github.ref }} and the repository is ${{ github.repository }}."
- name: Check out repository code
uses: actions/checkout@v4
- run: echo "The ${{ github.repository }} repository has been cloned to the runner."
- name: "Set environmental variables"
run: |
echo "GALACTICUS_EXEC_PATH=$GITHUB_WORKSPACE" >> $GITHUB_ENV
echo "NODE_OPTIONS=--max_old_space_size=4096" >> $GITHUB_ENV
- name: Build the docs
run: |
cd $GALACTICUS_EXEC_PATH
git config --global --add safe.directory $GALACTICUS_EXEC_PATH
./scripts/doc/Build_Documentation.sh -f yes -p 2
- name: Upload docs
uses: actions/upload-artifact@v3
with:
name: galacticus-docs
path: |
./doc/Galacticus_Usage.pdf
./doc/Galacticus_Physics.pdf
./doc/Galacticus_Development.pdf
./doc/Galacticus_Source.pdf
- run: echo "This job's status is ${{ job.status }}."
### Tools
Build-Tools:
runs-on: ubuntu-latest
container: ghcr.io/galacticusorg/buildenv:latest
needs: Build-Executable-Linux
steps:
- run: echo "The job was automatically triggered by a ${{ github.event_name }} event."
- run: echo "This job is now running on a ${{ runner.os }} server."
- run: echo "The name of the branch is ${{ github.ref }} and the repository is ${{ github.repository }}."
- name: Check out repository code
uses: actions/checkout@v4
- name: Check out repository datasets
uses: actions/checkout@v4
with:
repository: galacticusorg/datasets
path: datasets
- run: echo "The ${{ github.repository }} repository has been cloned to the runner."
- name: "Set environmental variables"
run: |
echo "GALACTICUS_EXEC_PATH=$GITHUB_WORKSPACE" >> $GITHUB_ENV
echo "GALACTICUS_DATA_PATH=$GITHUB_WORKSPACE/datasets" >> $GITHUB_ENV
echo "GALACTICUS_FCFLAGS+=\ -static" >> $GITHUB_ENV
echo "NODE_OPTIONS=--max_old_space_size=4096" >> $GITHUB_ENV
- name: Download executables
uses: actions/download-artifact@v3
with:
name: galacticus-exec
- name: Build tools
run: |
cd $GALACTICUS_EXEC_PATH
git config --global --add safe.directory $GALACTICUS_EXEC_PATH
mkdir -p $GALACTICUS_DATA_PATH/dynamic
chmod u=wrx ./Galacticus.exe
./Galacticus.exe parameters/buildTools.xml
cd $GALACTICUS_DATA_PATH
classVersion=`awk '{if ($1 == "class:") print $2}' ${GALACTICUS_EXEC_PATH}/aux/dependencies.yml`
cambVersion=`awk '{if ($1 == "camb:") print $2}' ${GALACTICUS_EXEC_PATH}/aux/dependencies.yml`
forutilsVersion=`awk '{if ($1 == "forutils:") print $2}' ${GALACTICUS_EXEC_PATH}/aux/dependencies.yml`
fspsVersion=`awk '{if ($1 == "fsps:") print $2}' ${GALACTICUS_EXEC_PATH}/aux/dependencies.yml`
cloudyVersion=`awk '{if ($1 == "cloudy:") print $2}' ${GALACTICUS_EXEC_PATH}/aux/dependencies.yml`
tar cfj tools.tar.bz2 \
dynamic/CAMB-${cambVersion}/fortran/camb \
dynamic/AxionCAMB/camb \
dynamic/class_public-${classVersion}/class \
dynamic/RecFast/recfast.exe \
dynamic/RecFast/currentVersion \
dynamic/c${cloudyVersion}/source/cloudy.exe \
dynamic/c${cloudyVersion}/data \
dynamic/fsps-${fspsVersion}/src/autosps.exe \
dynamic/fsps-${fspsVersion}/dust \
dynamic/fsps-${fspsVersion}/data \
dynamic/fsps-${fspsVersion}/nebular \
dynamic/fsps-${fspsVersion}/SPECTRA \
dynamic/fsps-${fspsVersion}/OUTPUTS \
dynamic/fsps-${fspsVersion}/ISOCHRONES
- name: Upload tools
uses: actions/upload-artifact@v3
with:
name: galacticus-tools
path: ./datasets/tools.tar.bz2
- run: echo "This job's status is ${{ job.status }}."
## MacOS
### Static executable
Build-Executable-MacOS:
runs-on: macos-11
steps:
- run: echo "The job was automatically triggered by a ${{ github.event_name }} event."
- run: echo "This job is now running on a ${{ runner.os }} server."
- run: echo "The name of the branch is ${{ github.ref }} and the repository is ${{ github.repository }}."
- name: Check out repository code
uses: actions/checkout@v4
- run: echo "The ${{ github.repository }} repository has been cloned to the runner."
- name: "Set environmental variables"
run: |
echo "GALACTICUS_EXEC_PATH=$GITHUB_WORKSPACE" >> $GITHUB_ENV
echo "GALACTICUS_FCFLAGS=\"$GALACTICUS_FCFLAGS -fintrinsic-modules-path /usr/local/finclude -fintrinsic-modules-path /usr/local/include -fintrinsic-modules-path /usr/local/include/gfortran -fintrinsic-modules-path /usr/local/lib/gfortran/modules -L/usr/local/lib\"" >> $GITHUB_ENV
echo "PATH=$PATH:/opt/local/bin:/usr/local/bin" >> $GITHUB_ENV
echo "PERL_MM_USE_DEFAULT=1" >> $GITHUB_ENV
echo "NODE_OPTIONS=--max_old_space_size=4096" >> $GITHUB_ENV
- name: Install MacPorts
run: |
curl -L https://github.com/macports/macports-base/releases/download/v2.7.1/MacPorts-2.7.1-11-BigSur.pkg --output MacPorts-2.7.1-11-BigSur.pkg
sudo installer -pkg ./MacPorts-2.7.1-11-BigSur.pkg -target /
rm ./MacPorts-2.7.1-11-BigSur.pkg
- name: Install guile
run: sudo port install guile18
- name: Install libmatheval
run: |
curl -L https://github.com/galacticusorg/libmatheval/releases/download/latest/libmatheval-1.1.12.tar.gz --output libmatheval-1.1.12.tar.gz
tar xvfz libmatheval-1.1.12.tar.gz
cd libmatheval-1.1.12
# Patch following the approach used in MacPorts (https://github.com/macports/macports-ports/tree/master/math/libmatheval).
sed -E -i~ s/"#undef HAVE_SCM_T_BITS"/"#define HAVE_SCM_T_BITS 1"/ config.h.in
sed -E -i~ s/"-lguile"/"-lguile18"/ configure
sed -E -i~ s/"libguile.h"/"libguile18.h"/g configure tests/matheval.c
# Set guile paths following the approach used in MacPorts (https://github.com/macports/macports-ports/tree/master/math/libmatheval).
CC=gcc-11 GUILE=/opt/local/bin/guile18 GUILE_CONFIG=/opt/local/bin/guile18-config GUILE_TOOLS=/opt/local/bin/guile18-tools ./configure --prefix=/usr/local
make -j3
sudo make install
cd ..
rm -rf libmatheval-1.1.12.tar.gz libmatheval-1.1.12
- name: Install qhull
run: |
curl -L http://www.qhull.org/download/qhull-2020-src-8.0.2.tgz --output qhull-2020-src-8.0.2.tgz
tar xvfz qhull-2020-src-8.0.2.tgz
cd qhull-2020.2
make -j3 CC=gcc-11 CXX=g++-11
sudo make install
cd ..
rm -rf qhull-2020-src-8.0.2.tgz qhull-2020.2
- name: Install GSL
run: |
curl -L ftp://ftp.gnu.org/gnu/gsl/gsl-2.6.tar.gz --output gsl-2.6.tar.gz
tar xvfz gsl-2.6.tar.gz
cd gsl-2.6
CC=gcc-11 ./configure --prefix=/usr/local
make -j3
sudo make install
cd ..
rm -rf gsl-2.6 gsl-2.6.tar.gz
- name: Install HDF5
run: |
curl -L https://support.hdfgroup.org/ftp/HDF5/releases/hdf5-1.8/hdf5-1.8.20/src/hdf5-1.8.20.tar.gz --output hdf5-1.8.20.tar.gz
tar -vxzf hdf5-1.8.20.tar.gz
cd hdf5-1.8.20
CC=gcc-11 CXX=g++-11 FC=gfortran-11 ./configure --prefix=/usr/local --enable-fortran --enable-production
make -j3
sudo make install
cd ..
rm -rf hdf5-1.8.20 hdf5-1.8.20.tar.gz
- name: Install FoX
run: |
curl -L https://github.com/andreww/fox/archive/refs/tags/4.1.0.tar.gz --output FoX-4.1.0.tar.gz
tar xvfz FoX-4.1.0.tar.gz
cd fox-4.1.0
FC=gfortran-11 ./configure --prefix=/usr/local
make -j3
sudo make install
cd ..
rm -rf fox-4.1.0 FoX-4.1.0.tar.gz
- name: Install FFTW3
run: |
curl -L ftp://ftp.fftw.org/pub/fftw/fftw-3.3.4.tar.gz --output fftw-3.3.4.tar.gz
tar xvfz fftw-3.3.4.tar.gz
cd fftw-3.3.4
F77=gfortran-11 CC=gcc-11 ./configure --prefix=/usr/local
make -j4
sudo make install
cd ..
rm -rf fftw-3.3.4 fftw-3.3.4.tar.gz
- name: Install ANN
run: |
curl -L http://www.cs.umd.edu/~mount/ANN/Files/1.1.2/ann_1.1.2.tar.gz --output ann_1.1.2.tar.gz
tar xvfz ann_1.1.2.tar.gz
cd ann_1.1.2
sed -E -i~ s/"C\+\+ = g\+\+"/"C\+\+ = g\+\+\-11"/ Make-config
make macosx-g++
cp bin/* /usr/local/bin/.
cp lib/* /usr/local/lib/.
cp -R include/* /usr/local/include/.
- name: Install IO::Socket::SSL
run: |
curl -L https://cpan.metacpan.org/authors/id/C/CH/CHRISN/Net-SSLeay-1.90.tar.gz --output Net-SSLeay-1.90.tar.gz
tar xvfz Net-SSLeay-1.90.tar.gz
cd Net-SSLeay-1.90
perl Makefile.PL
make -j3
sudo make install
cd ..
curl -L https://cpan.metacpan.org/authors/id/S/SU/SULLR/IO-Socket-SSL-1.966.tar.gz --output IO-Socket-SSL-1.966.tar.gz
tar xvfz IO-Socket-SSL-1.966.tar.gz
cd IO-Socket-SSL-1.966
perl Makefile.PL
make -j3
sudo make install
cd ..
curl -L https://cpan.metacpan.org/authors/id/M/MK/MKODERER/Sys-CPU-0.52.tar.gz --output Sys-CPU-0.52.tar.gz
tar xvfz Sys-CPU-0.52.tar.gz
cd Sys-CPU-0.52
perl Makefile.PL
make -j3
sudo make install
cd ..
- name: Install CPAN
run: |
sudo perl -MCPAN -e shell
sudo perl -MCPAN -e 'install Bundle::CPAN'
- name: Install Perl modules
run: |
export CFLAGS=-I/Library/Developer/CommandLineTools/SDKs/MacOSX10.15.sdk/System/Library/Perl/5.18/darwin-thread-multi-2level/CORE
sudo perl -MCPAN -e 'force("install","NestedMap")'
sudo perl -MCPAN -e 'force("install","Scalar::Util")'
sudo perl -MCPAN -e 'force("install","Term::ANSIColor")'
sudo perl -MCPAN -e 'force("install","Text::Table")'
sudo perl -MCPAN -e 'force("install","ExtUtils::ParseXS")'
sudo perl -MCPAN -e 'install Path::Tiny'
sudo perl -MCPAN -e 'install PkgConfig'
sudo perl -MCPAN -e 'install Alien::Base::Wrapper'
sudo perl -MCPAN -e 'force("install","Alien::Libxml2")'
sudo perl -MCPAN -e 'install XML::LibXML::SAX'
sudo perl -MCPAN -e 'force("install","XML::SAX::ParserFactory")'
sudo perl -MCPAN -e 'force("install","XML::Validator::Schema")'
sudo perl -MCPAN -e 'force("install","Text::Template")'
sudo perl -MCPAN -e 'force("install","List::Uniq")'
sudo perl -MCPAN -e 'force("install","IO::Util")'
sudo perl -MCPAN -e 'force("install","Class::Util")'
sudo perl -MCPAN -e 'force("install","CGI::Builder")'
sudo perl -MCPAN -e 'force("install","Simple")'
sudo perl -MCPAN -e 'force("install","Readonly")'
sudo perl -MCPAN -e 'force("install","File::Slurp")'
sudo perl -MCPAN -e 'force("install","XML::Simple")'
sudo perl -MCPAN -e 'force("install","List::MoreUtils")'
sudo perl -MCPAN -e 'force("install","Clone")'
sudo perl -MCPAN -e 'force("install","IO::Scalar")'
sudo perl -MCPAN -e 'force("install","Regexp::Common")'
sudo perl -MCPAN -e 'install LaTeX::Encode'
sudo perl -MCPAN -e 'install Sub::Identify'
- name: Build Galacticus
run: |
export GALACTICUS_EXEC_PATH=`pwd`
export FCCOMPILER=gfortran-11
export CCOMPILER=gcc-11
export CPPCOMPILER=g++-11
export GALACTICUS_FCFLAGS="-fintrinsic-modules-path /usr/local/finclude -fintrinsic-modules-path /usr/local/include -fintrinsic-modules-path /usr/local/include/gfortran -fintrinsic-modules-path /usr/local/lib/gfortran/modules -L/usr/local/lib -L/opt/local/lib"
export GALACTICUS_CFLAGS="-I/usr/local/include -I/opt/local/include"
export GALACTICUS_CPPFLAGS="-I/usr/local/include -I/opt/local/include -I/usr/local/include/libqhullcpp"
export BUILDPATH=./work/build
set -o pipefail
make -j3 Galacticus.exe tests.hashes.cryptographic.exe 2>&1 | tee build.log
./scripts/build/staticRelinker.pl `grep '\-o Galacticus.exe' build.log`
./scripts/build/staticRelinker.pl `grep '\-o tests.hashes.cryptographic.exe' build.log`
dsymutil -o Galacticus.exe.dSYM Galacticus.exe
zip -r debugSymbolsMacOS.zip Galacticus.exe.dSYM
mv Galacticus.exe Galacticus_MacOS.exe
- name: Upload Galacticus executable
uses: actions/upload-artifact@v3
with:
name: galacticus-exec-MacOS
path: 'Galacticus_MacOS.exe'
- name: Upload test code executables
uses: actions/upload-artifact@v3
with:
name: test-execs-MacOS
path: 'tests.*.exe'
- name: Upload Galacticus debug symbols
uses: actions/upload-artifact@v3
with:
name: galacticus-debug-MacOS
path: 'debugSymbolsMacOS.zip'
## Library
Build-Library-MacOS:
runs-on: macos-11
steps:
- run: echo "The job was automatically triggered by a ${{ github.event_name }} event."
- run: echo "This job is now running on a ${{ runner.os }} server."
- run: echo "The name of the branch is ${{ github.ref }} and the repository is ${{ github.repository }}."
- name: Check out repository code
uses: actions/checkout@v4
- run: echo "The ${{ github.repository }} repository has been cloned to the runner."
- name: "Set environmental variables"
run: |
echo "GALACTICUS_EXEC_PATH=$GITHUB_WORKSPACE" >> $GITHUB_ENV
echo "GALACTICUS_FCFLAGS=\"$GALACTICUS_FCFLAGS -fintrinsic-modules-path /usr/local/finclude -fintrinsic-modules-path /usr/local/include -fintrinsic-modules-path /usr/local/include/gfortran -fintrinsic-modules-path /usr/local/lib/gfortran/modules -L/usr/local/lib\"" >> $GITHUB_ENV
echo "PATH=$PATH:/opt/local/bin:/usr/local/bin" >> $GITHUB_ENV
echo "PERL_MM_USE_DEFAULT=1" >> $GITHUB_ENV
echo "NODE_OPTIONS=--max-old-space-size=5120" >> $GITHUB_ENV
echo "NODE_OPTIONS=--max_old_space_size=4096" >> $GITHUB_ENV
- name: Install MacPorts
run: |
curl -L https://github.com/macports/macports-base/releases/download/v2.7.1/MacPorts-2.7.1-11-BigSur.pkg --output MacPorts-2.7.1-11-BigSur.pkg
sudo installer -pkg ./MacPorts-2.7.1-11-BigSur.pkg -target /
rm ./MacPorts-2.7.1-11-BigSur.pkg
- name: Install guile
run: sudo port install guile18
- name: Install libmatheval
run: |
curl -L https://github.com/galacticusorg/libmatheval/releases/download/latest/libmatheval-1.1.12.tar.gz --output libmatheval-1.1.12.tar.gz
tar xvfz libmatheval-1.1.12.tar.gz
cd libmatheval-1.1.12
# Patch following the approach used in MacPorts (https://github.com/macports/macports-ports/tree/master/math/libmatheval).
sed -E -i~ s/"#undef HAVE_SCM_T_BITS"/"#define HAVE_SCM_T_BITS 1"/ config.h.in
sed -E -i~ s/"-lguile"/"-lguile18"/ configure
sed -E -i~ s/"libguile.h"/"libguile18.h"/g configure tests/matheval.c
# Set guile paths following the approach used in MacPorts (https://github.com/macports/macports-ports/tree/master/math/libmatheval).
CC=gcc-11 GUILE=/opt/local/bin/guile18 GUILE_CONFIG=/opt/local/bin/guile18-config GUILE_TOOLS=/opt/local/bin/guile18-tools ./configure --prefix=/usr/local
make -j3
sudo make install
cd ..
rm -rf libmatheval-1.1.12.tar.gz libmatheval-1.1.12
- name: Install qhull
run: |
curl -L http://www.qhull.org/download/qhull-2020-src-8.0.2.tgz --output qhull-2020-src-8.0.2.tgz
tar xvfz qhull-2020-src-8.0.2.tgz
cd qhull-2020.2
make -j3 CC=gcc-11 CXX=g++-11
sudo make install
cd ..
rm -rf qhull-2020-src-8.0.2.tgz qhull-2020.2
- name: Install GSL
run: |
curl -L ftp://ftp.gnu.org/gnu/gsl/gsl-2.6.tar.gz --output gsl-2.6.tar.gz
tar xvfz gsl-2.6.tar.gz
cd gsl-2.6
CC=gcc-11 ./configure --prefix=/usr/local
make -j3
sudo make install
cd ..
rm -rf gsl-2.6 gsl-2.6.tar.gz
- name: Install HDF5
run: |
curl -L https://support.hdfgroup.org/ftp/HDF5/releases/hdf5-1.8/hdf5-1.8.20/src/hdf5-1.8.20.tar.gz --output hdf5-1.8.20.tar.gz
tar -vxzf hdf5-1.8.20.tar.gz
cd hdf5-1.8.20
CC=gcc-11 CXX=g++-11 FC=gfortran-11 ./configure --prefix=/usr/local --enable-fortran --enable-production
make -j3
sudo make install
cd ..
rm -rf hdf5-1.8.20 hdf5-1.8.20.tar.gz
- name: Install FoX
run: |
curl -L https://github.com/andreww/fox/archive/refs/tags/4.1.0.tar.gz --output FoX-4.1.0.tar.gz
tar xvfz FoX-4.1.0.tar.gz
cd fox-4.1.0
FC=gfortran-11 ./configure --prefix=/usr/local
make -j3
sudo make install
cd ..
rm -rf fox-4.1.0 FoX-4.1.0.tar.gz
- name: Install FFTW3
run: |
curl -L ftp://ftp.fftw.org/pub/fftw/fftw-3.3.4.tar.gz --output fftw-3.3.4.tar.gz
tar xvfz fftw-3.3.4.tar.gz
cd fftw-3.3.4
F77=gfortran-11 CC=gcc-11 ./configure --prefix=/usr/local
make -j4
sudo make install
cd ..
rm -rf fftw-3.3.4 fftw-3.3.4.tar.gz
- name: Install ANN
run: |
curl -L http://www.cs.umd.edu/~mount/ANN/Files/1.1.2/ann_1.1.2.tar.gz --output ann_1.1.2.tar.gz
tar xvfz ann_1.1.2.tar.gz
cd ann_1.1.2
sed -E -i~ s/"C\+\+ = g\+\+"/"C\+\+ = g\+\+\-11"/ Make-config
make macosx-g++
cp bin/* /usr/local/bin/.
cp lib/* /usr/local/lib/.
cp -R include/* /usr/local/include/.
- name: Install IO::Socket::SSL
run: |
curl -L https://cpan.metacpan.org/authors/id/C/CH/CHRISN/Net-SSLeay-1.90.tar.gz --output Net-SSLeay-1.90.tar.gz
tar xvfz Net-SSLeay-1.90.tar.gz
cd Net-SSLeay-1.90
perl Makefile.PL
make -j3
sudo make install
cd ..
curl -L https://cpan.metacpan.org/authors/id/S/SU/SULLR/IO-Socket-SSL-1.966.tar.gz --output IO-Socket-SSL-1.966.tar.gz
tar xvfz IO-Socket-SSL-1.966.tar.gz
cd IO-Socket-SSL-1.966
perl Makefile.PL
make -j3
sudo make install
cd ..
cd ..
curl -L https://cpan.metacpan.org/authors/id/M/MK/MKODERER/Sys-CPU-0.52.tar.gz --output Sys-CPU-0.52.tar.gz
tar xvfz Sys-CPU-0.52.tar.gz
cd Sys-CPU-0.52
perl Makefile.PL
make -j3
sudo make install
- name: Install CPAN
run: |
sudo perl -MCPAN -e shell
sudo perl -MCPAN -e 'install Bundle::CPAN'
- name: Install Perl modules
run: |
export CFLAGS=-I/Library/Developer/CommandLineTools/SDKs/MacOSX10.15.sdk/System/Library/Perl/5.18/darwin-thread-multi-2level/CORE
sudo perl -MCPAN -e 'force("install","NestedMap")'
sudo perl -MCPAN -e 'force("install","Scalar::Util")'
sudo perl -MCPAN -e 'force("install","Term::ANSIColor")'
sudo perl -MCPAN -e 'force("install","Text::Table")'
sudo perl -MCPAN -e 'force("install","ExtUtils::ParseXS")'
sudo perl -MCPAN -e 'install Path::Tiny'
sudo perl -MCPAN -e 'install PkgConfig'
sudo perl -MCPAN -e 'install Alien::Base::Wrapper'
sudo perl -MCPAN -e 'force("install","Alien::Libxml2")'
sudo perl -MCPAN -e 'install XML::LibXML::SAX'
sudo perl -MCPAN -e 'force("install","XML::SAX::ParserFactory")'
sudo perl -MCPAN -e 'force("install","XML::Validator::Schema")'
sudo perl -MCPAN -e 'force("install","Text::Template")'
sudo perl -MCPAN -e 'force("install","List::Uniq")'
sudo perl -MCPAN -e 'force("install","IO::Util")'
sudo perl -MCPAN -e 'force("install","Class::Util")'
sudo perl -MCPAN -e 'force("install","CGI::Builder")'
sudo perl -MCPAN -e 'force("install","Simple")'
sudo perl -MCPAN -e 'force("install","Readonly")'
sudo perl -MCPAN -e 'force("install","File::Slurp")'
sudo perl -MCPAN -e 'force("install","XML::Simple")'
sudo perl -MCPAN -e 'force("install","List::MoreUtils")'
sudo perl -MCPAN -e 'force("install","Clone")'
sudo perl -MCPAN -e 'force("install","IO::Scalar")'
sudo perl -MCPAN -e 'force("install","Regexp::Common")'
sudo perl -MCPAN -e 'install LaTeX::Encode'
sudo perl -MCPAN -e 'install Sub::Identify'
- name: Build Galacticus
run: |
export GALACTICUS_EXEC_PATH=`pwd`
export FCCOMPILER=gfortran-11
export CCOMPILER=gcc-11
export CPPCOMPILER=g++-11
export GALACTICUS_FCFLAGS="-fintrinsic-modules-path /usr/local/finclude -fintrinsic-modules-path /usr/local/include -fintrinsic-modules-path /usr/local/include/gfortran -fintrinsic-modules-path /usr/local/lib/gfortran/modules -L/usr/local/lib -L/opt/local/lib"
export GALACTICUS_CFLAGS="-I/usr/local/include -I/opt/local/include"
export GALACTICUS_CPPFLAGS="-I/usr/local/include -I/opt/local/include -I/usr/local/include/libqhullcpp"
make -j3 GALACTICUS_BUILD_OPTION=lib libgalacticus.so
- name: Package the code
run: |
export GALACTICUS_EXEC_PATH=`pwd`
export FCCOMPILER=gfortran-11
export CCOMPILER=gcc-11
export CPPCOMPILER=g++-11
export GALACTICUS_FCFLAGS="-fintrinsic-modules-path /usr/local/finclude -fintrinsic-modules-path /usr/local/include -fintrinsic-modules-path /usr/local/include/gfortran -fintrinsic-modules-path /usr/local/lib/gfortran/modules -L/usr/local/lib -L/opt/local/lib"
export GALACTICUS_CFLAGS="-I/usr/local/include -I/opt/local/include"
export GALACTICUS_CPPFLAGS="-I/usr/local/include -I/opt/local/include -I/usr/local/include/libqhullcpp"
cd $GALACTICUS_EXEC_PATH
git config --global --add safe.directory $GALACTICUS_EXEC_PATH
mkdir galacticus
mkdir galacticus/lib
mkdir galacticus/python
# Find all dynamic libraries needed (filtering out any non-"local" ones) and copy to our folder.
otool -L libgalacticus.so | awk '{if (NR > 1) print $1}' | grep -e /usr/local -e /opt/local | xargs -n 1 -I{} cp {} galacticus/lib/
mv galacticus.py galacticus/python/
mv libgalacticus.so galacticus/lib/
zip -r libgalacticusMacOS.zip galacticus
- name: Upload library
uses: actions/upload-artifact@v3
with:
name: galacticus-library-MacOS
path: 'libgalacticusMacOS.zip'
### Tools
Build-Tools-MacOS:
runs-on: macos-11
steps:
- run: echo "The job was automatically triggered by a ${{ github.event_name }} event."
- run: echo "This job is now running on a ${{ runner.os }} server."
- run: echo "The name of the branch is ${{ github.ref }} and the repository is ${{ github.repository }}."
- name: Check out repository code
uses: actions/checkout@v4
- name: Check out repository datasets
uses: actions/checkout@v4
with:
repository: galacticusorg/datasets
path: datasets
- run: echo "The ${{ github.repository }} repository has been cloned to the runner."
- name: "Set environmental variables"
run: |
echo "GALACTICUS_EXEC_PATH=$GITHUB_WORKSPACE" >> $GITHUB_ENV
echo "GALACTICUS_DATA_PATH=$GITHUB_WORKSPACE/datasets" >> $GITHUB_ENV
echo "GALACTICUS_FCFLAGS=\"$GALACTICUS_FCFLAGS -static -fintrinsic-modules-path /usr/local/finclude -fintrinsic-modules-path /usr/local/include -fintrinsic-modules-path /usr/local/include/gfortran -fintrinsic-modules-path /usr/local/lib/gfortran/modules -L/usr/local/lib\"" >> $GITHUB_ENV
echo "PATH=$PATH:/opt/local/bin:/usr/local/bin" >> $GITHUB_ENV
echo "PERL_MM_USE_DEFAULT=1" >> $GITHUB_ENV
echo "NODE_OPTIONS=--max_old_space_size=4096" >> $GITHUB_ENV
- name: Install MacPorts
run: |
curl -L https://github.com/macports/macports-base/releases/download/v2.7.1/MacPorts-2.7.1-11-BigSur.pkg --output MacPorts-2.7.1-11-BigSur.pkg
sudo installer -pkg ./MacPorts-2.7.1-11-BigSur.pkg -target /
rm ./MacPorts-2.7.1-11-BigSur.pkg
- name: Install guile
run: sudo port install guile18
- name: Install libmatheval
run: |
curl -L https://github.com/galacticusorg/libmatheval/releases/download/latest/libmatheval-1.1.12.tar.gz --output libmatheval-1.1.12.tar.gz
tar xvfz libmatheval-1.1.12.tar.gz
cd libmatheval-1.1.12
# Patch following the approach used in MacPorts (https://github.com/macports/macports-ports/tree/master/math/libmatheval).
sed -E -i~ s/"#undef HAVE_SCM_T_BITS"/"#define HAVE_SCM_T_BITS 1"/ config.h.in
sed -E -i~ s/"-lguile"/"-lguile18"/ configure
sed -E -i~ s/"libguile.h"/"libguile18.h"/g configure tests/matheval.c
# Set guile paths following the approach used in MacPorts (https://github.com/macports/macports-ports/tree/master/math/libmatheval).
CC=gcc-11 GUILE=/opt/local/bin/guile18 GUILE_CONFIG=/opt/local/bin/guile18-config GUILE_TOOLS=/opt/local/bin/guile18-tools ./configure --prefix=/usr/local
make -j3
sudo make install
cd ..
rm -rf libmatheval-1.1.12.tar.gz libmatheval-1.1.12
- name: Install md5sum
run: sudo port install md5sha1sum
- name: Install GSL
run: |
curl -L ftp://ftp.gnu.org/gnu/gsl/gsl-2.6.tar.gz --output gsl-2.6.tar.gz
tar xvfz gsl-2.6.tar.gz
cd gsl-2.6
CC=gcc-11 ./configure --prefix=/usr/local
make -j3
sudo make install
rm -rf gsl-2.6 gsl-2.6.tar.gz
- name: Install HDF5
run: |
curl -L https://support.hdfgroup.org/ftp/HDF5/releases/hdf5-1.8/hdf5-1.8.20/src/hdf5-1.8.20.tar.gz --output hdf5-1.8.20.tar.gz
tar -vxzf hdf5-1.8.20.tar.gz
cd hdf5-1.8.20
CC=gcc-11 CXX=g++-11 FC=gfortran-11 ./configure --prefix=/usr/local --enable-fortran --enable-production
make -j3
sudo make install
rm -rf hdf5-1.8.20 hdf5-1.8.20.tar.gz
- name: Install FoX
run: |
curl -L https://github.com/andreww/fox/archive/refs/tags/4.1.0.tar.gz --output FoX-4.1.0.tar.gz
tar xvfz FoX-4.1.0.tar.gz
cd fox-4.1.0
FC=gfortran-11 ./configure --prefix=/usr/local
make -j3
sudo make install
rm -rf fox-4.1.0 FoX-4.1.0.tar.gz
- name: Install FFTW3
run: |
curl -L ftp://ftp.fftw.org/pub/fftw/fftw-3.3.4.tar.gz --output fftw-3.3.4.tar.gz
tar xvfz fftw-3.3.4.tar.gz
cd fftw-3.3.4
F77=gfortran-11 CC=gcc-11 ./configure --prefix=/usr/local
make -j4
sudo make install
rm -rf fftw-3.3.4 fftw-3.3.4.tar.gz
- name: Install ANN
run: |
curl -L http://www.cs.umd.edu/~mount/ANN/Files/1.1.2/ann_1.1.2.tar.gz --output ann_1.1.2.tar.gz
tar xvfz ann_1.1.2.tar.gz
cd ann_1.1.2
sed -E -i~ s/"C\+\+ = g\+\+"/"C\+\+ = g\+\+\-11"/ Make-config
make macosx-g++
cp bin/* /usr/local/bin/.
cp lib/* /usr/local/lib/.
cp -R include/* /usr/local/include/.
- name: Install IO::Socket::SSL
run: |
curl -L https://cpan.metacpan.org/authors/id/C/CH/CHRISN/Net-SSLeay-1.90.tar.gz --output Net-SSLeay-1.90.tar.gz
tar xvfz Net-SSLeay-1.90.tar.gz
cd Net-SSLeay-1.90
perl Makefile.PL
make -j3
sudo make install
cd ..
curl -L https://cpan.metacpan.org/authors/id/S/SU/SULLR/IO-Socket-SSL-1.966.tar.gz --output IO-Socket-SSL-1.966.tar.gz
tar xvfz IO-Socket-SSL-1.966.tar.gz
cd IO-Socket-SSL-1.966
perl Makefile.PL
make -j3
sudo make install
cd ..
- name: Install CPAN
run: |
sudo perl -MCPAN -e shell
sudo perl -MCPAN -e 'install Bundle::CPAN'
- name: Install Perl modules
run: |
export CFLAGS=-I/Library/Developer/CommandLineTools/SDKs/MacOSX10.15.sdk/System/Library/Perl/5.18/darwin-thread-multi-2level/CORE
sudo perl -MCPAN -e 'force("install","NestedMap")'
sudo perl -MCPAN -e 'force("install","Scalar::Util")'
sudo perl -MCPAN -e 'force("install","Term::ANSIColor")'
sudo perl -MCPAN -e 'force("install","Text::Table")'
sudo perl -MCPAN -e 'force("install","ExtUtils::ParseXS")'
sudo perl -MCPAN -e 'install Path::Tiny'
sudo perl -MCPAN -e 'install PkgConfig'
sudo perl -MCPAN -e 'install Alien::Base::Wrapper'
sudo perl -MCPAN -e 'force("install","Alien::Libxml2")'
sudo perl -MCPAN -e 'install XML::LibXML::SAX'
sudo perl -MCPAN -e 'force("install","XML::SAX::ParserFactory")'
sudo perl -MCPAN -e 'force("install","XML::Validator::Schema")'
sudo perl -MCPAN -e 'force("install","Text::Template")'
sudo perl -MCPAN -e 'force("install","List::Uniq")'
sudo perl -MCPAN -e 'force("install","IO::Util")'
sudo perl -MCPAN -e 'force("install","Class::Util")'
sudo perl -MCPAN -e 'force("install","CGI::Builder")'
sudo perl -MCPAN -e 'force("install","Simple")'
sudo perl -MCPAN -e 'force("install","Readonly")'
sudo perl -MCPAN -e 'force("install","File::Slurp")'
sudo perl -MCPAN -e 'force("install","XML::Simple")'
sudo perl -MCPAN -e 'force("install","List::MoreUtils")'
sudo perl -MCPAN -e 'force("install","Clone")'
sudo perl -MCPAN -e 'force("install","IO::Scalar")'
sudo perl -MCPAN -e 'force("install","Regexp::Common")'
sudo perl -MCPAN -e 'install LaTeX::Encode'
sudo perl -MCPAN -e 'install Sub::Identify'
sudo perl -MCPAN -e 'install Sys::CPU'
- name: Build Galacticus
run: |
export GALACTICUS_EXEC_PATH=`pwd`
export FCCOMPILER=gfortran-11
export CCOMPILER=gcc-11
export CPPCOMPILER=g++-11
export GALACTICUS_FCFLAGS="-fintrinsic-modules-path /usr/local/finclude -fintrinsic-modules-path /usr/local/include -fintrinsic-modules-path /usr/local/include/gfortran -fintrinsic-modules-path /usr/local/lib/gfortran/modules -L/usr/local/lib -L/opt/local/lib"
export GALACTICUS_CFLAGS="-I/usr/local/include -I/opt/local/include"
export GALACTICUS_CPPFLAGS="-I/usr/local/include -I/opt/local/include"
make -j3 Galacticus.exe
- name: Build tools
run: |
export GALACTICUS_EXEC_PATH=`pwd`
export FCCOMPILER=gfortran-11
export CCOMPILER=gcc-11
export CPPCOMPILER=g++-11
export GALACTICUS_FCFLAGS="-fintrinsic-modules-path /usr/local/include -L/usr/local/lib -L/opt/local/lib"
export GALACTICUS_CFLAGS="-I/usr/local/include -I/opt/local/include"
export GALACTICUS_CPPFLAGS="-I/usr/local/include -I/opt/local/include"
classVersion=`awk '{if ($1 == "class:") print $2}' ${GALACTICUS_EXEC_PATH}/aux/dependencies.yml`
cambVersion=`awk '{if ($1 == "camb:") print $2}' ${GALACTICUS_EXEC_PATH}/aux/dependencies.yml`
forutilsVersion=`awk '{if ($1 == "forutils:") print $2}' ${GALACTICUS_EXEC_PATH}/aux/dependencies.yml`
fspsVersion=`awk '{if ($1 == "fsps:") print $2}' ${GALACTICUS_EXEC_PATH}/aux/dependencies.yml`
cloudyVersion=`awk '{if ($1 == "cloudy:") print $2}' ${GALACTICUS_EXEC_PATH}/aux/dependencies.yml`
cd $GALACTICUS_EXEC_PATH
git config --global --add safe.directory $GALACTICUS_EXEC_PATH
mkdir -p $GALACTICUS_DATA_PATH/dynamic
set -o pipefail
./Galacticus.exe parameters/buildTools.xml 2>&1 | tee build.log
cd $GALACTICUS_DATA_PATH/dynamic/CAMB-${cambVersion}/fortran/
$GALACTICUS_EXEC_PATH/scripts/build/staticRelinker.pl gfortran-11 -cpp -Ofast -fopenmp -fintrinsic-modules-path /usr/local/include -L/usr/local/lib -L/opt/local/lib -JRelease -IRelease/ -I"/Users/runner/work/galacticus/galacticus/datasets/dynamic/CAMB-${cambVersion}/fortran/../forutils/Release/" Release/inidriver.o Release/libcamb.a -L"/Users/runner/work/galacticus/galacticus/datasets/dynamic/CAMB-${cambVersion}/fortran/../forutils/Release/" -lforutils -o camb
cd $GALACTICUS_DATA_PATH/dynamic/AxionCAMB/
$GALACTICUS_EXEC_PATH/scripts/build/staticRelinker.pl gfortran-11 -O3 -fintrinsic-modules-path /usr/local/include -L/usr/local/lib -L/opt/local/lib constants.o utils.o subroutines.o inifile.o power_tilt.o recfast_axion.o reionization.o modules.o bessels.o equations_ppf.o halofit_ppf.o lensing.o SeparableBispectrum.o cmbmain.o camb.o axion_background.o inidriver_axion.F90 -o camb
cd $GALACTICUS_DATA_PATH/dynamic/class_public-${classVersion}/
$GALACTICUS_EXEC_PATH/scripts/build/staticRelinker.pl `grep -E '\-o class ' $GALACTICUS_EXEC_PATH/build.log`
cd $GALACTICUS_DATA_PATH/dynamic/RecFast/
$GALACTICUS_EXEC_PATH/scripts/build/staticRelinker.pl gfortran-11 recfast.for -o recfast.exe -O3 -ffixed-form -ffixed-line-length-none
cd $GALACTICUS_DATA_PATH/dynamic/c${cloudyVersion}/source/
$GALACTICUS_EXEC_PATH/scripts/build/staticRelinker.pl `grep -E '\-o cloudy.exe' $GALACTICUS_EXEC_PATH/build.log`
cd $GALACTICUS_DATA_PATH/dynamic/fsps-${fspsVersion}/src
$GALACTICUS_EXEC_PATH/scripts/build/staticRelinker.pl `grep -E '\-o autosps.exe' $GALACTICUS_EXEC_PATH/build.log`
cd $GALACTICUS_DATA_PATH
zip -r toolsMacOS.zip \
dynamic/CAMB-${cambVersion}/fortran/camb \
dynamic/AxionCAMB/camb \
dynamic/class_public-${classVersion}/class \
dynamic/RecFast/recfast.exe \
dynamic/RecFast/currentVersion \
dynamic/c${cloudyVersion}/source/cloudy.exe \
dynamic/c${cloudyVersion}/data \
dynamic/fsps-${fspsVersion}/src/autosps.exe \
dynamic/fsps-${fspsVersion}/dust \
dynamic/fsps-${fspsVersion}/data \
dynamic/fsps-${fspsVersion}/nebular \
dynamic/fsps-${fspsVersion}/SPECTRA \
dynamic/fsps-${fspsVersion}/OUTPUTS \
dynamic/fsps-${fspsVersion}/ISOCHRONES
- name: Upload Galacticus executable
uses: actions/upload-artifact@v3
with:
name: galacticus-tools-MacOS
path: './datasets/toolsMacOS.zip'
- run: echo "This job's status is ${{ job.status }}."
# Benchmarks
Benchmark-Dark-Matter-Only-Subhalos:
runs-on: ubuntu-latest
container: ghcr.io/galacticusorg/buildenv:latest
needs: Build-Executable-Linux
steps:
- run: echo "The job was automatically triggered by a ${{ github.event_name }} event."
- run: echo "This job is now running on a ${{ runner.os }} server."
- run: echo "The name of the branch is ${{ github.ref }} and the repository is ${{ github.repository }}."
- name: Check out repository code
uses: actions/checkout@v4
- name: Check out repository datasets
uses: actions/checkout@v4
with:
repository: galacticusorg/datasets
path: datasets
- run: echo "The $githubrepository repository has been cloned to the runner."
- name: "Set environmental variables"
run: |
echo "GALACTICUS_EXEC_PATH=$GITHUB_WORKSPACE" >> $GITHUB_ENV
echo "GALACTICUS_DATA_PATH=$GITHUB_WORKSPACE/datasets" >> $GITHUB_ENV
- name: Download executables
uses: actions/download-artifact@v3
with:
name: galacticus-exec
- name: Install tools
run: |