Have you metadata for the GEMs from gut #78
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Dear Francisco, Best, |
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Replies: 3 comments
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Dear Hongzhong, Unfortunately I do not have a nice file with all this information to share with you yet, but I can tell you how you can get it. This is the article where the samples were taken from, and here is the download link for the supplementary data. The first sheet (named "Supplementary Table 3") has the metadata for the patient samples. Here is a txt file connecting the sample filenames (e.g. ERR260137) with the patient sample ID (e.g. 330). Each GEM should be named according to {sample_ID}_{mag_ID}.xml, so you should now be able to connect each GEM with its patient metadata. Please let me know if you have any further questions. Hope it helps and thanks for your interest! Best, |
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Thanks a lot! I will check the source data file. Best, |
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No problem! I hope to provide most of this info in the upcoming publication, but until then let me know if you are interested in any other info about the gut GEMs such as abundances, taxonomy, etc. Best, |
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Dear Hongzhong,
Unfortunately I do not have a nice file with all this information to share with you yet, but I can tell you how you can get it. This is the article where the samples were taken from, and here is the download link for the supplementary data. The first sheet (named "Supplementary Table 3") has the metadata for the patient samples. Here is a txt file connecting the sample filenames (e.g. ERR260137) with the patient sample ID (e.g. 330). Each GEM should be named according to {sample_ID}_{mag_ID}.xml, so you should now be able to connect each GEM with its patient metadata. Please let me know if you have any further questions. Hope it helps and thanks for your interest!
Best,
Fr…