CX2

We recommend trying installation using Spack. These notes are left as a reference.

Firedrake on CX2.

CX2 is Imperial's SGI cluster. These are the instructions for building and running Firedrake on CX2.

Building

module load gcc
module load mpi
module load git
export MPICC_CC=gcc
export MPICXX_CXX=g++
export MPIF08_F08='gfortran -I/apps/intel/2017/compilers_and_libraries_2017.0.098/linux/mpi/intel64/include/ilp64/gfortran/5.1.0'
export MPIF90_F90="$MPIF08_F08"
export PETSC_CONFIGURE_OPTIONS=--download-fblaslapack
export PATH=$HOME/.local/bin:$PATH
wget https://bootstrap.pypa.io/get-pip.py
python get-pip.py --user
pip install virtualenv
curl -O https://raw.githubusercontent.com/firedrakeproject/firedrake/master/scripts/firedrake-install
python firedrake-install --no-package-manager

Running

The following is a sample pbs script running the Helmholtz demo:

#!/bin/bash
# Job name
#PBS -N helmholtz_demo
# Time required in hh:mm:ss
#PBS -l walltime=00:02:00
# Resource requirements
#PBS -l select=1:ncpus=4:mpiprocs=4:ompthreads=1:mem=15999Mb
# Files to contain standard error and standard output
#PBS -o stdout
#PBS -e stderr
# Mail notification
#PBS -m ae
#PBS -M [email protected]

echo Working Directory is $PBS_O_WORKDIR
cd $PBS_O_WORKDIR
rm -f stdout* stderr*

module load gcc
module load mpi
source $HOME/src/firedrake/bin/activate

# Start time
echo Start time is `date` > date

mpiexec python $VIRTUAL_ENV/src/firedrake/demos/helmholtz/helmholtz.py

# End time
echo End time is `date` >> date