From e1fc31161f783d5a00df2e68615a3349f23bdd9d Mon Sep 17 00:00:00 2001 From: GitHub Action - check truth Date: Sun, 26 May 2024 13:19:48 +0000 Subject: [PATCH] Check truth data --- code/validation/check_truth.txt | 27 ++ data-truth/plots/Cases.svg | 4 +- data-truth/plots/Deaths.svg | 7 +- data-truth/plots/Hospitalisations.svg | 158 +++---- data-truth/plots/revisions-Cases.svg | 433 +++++++----------- data-truth/plots/revisions-Deaths.svg | 348 +++----------- .../plots/revisions-Hospitalizations.svg | 78 ++-- 7 files changed, 375 insertions(+), 680 deletions(-) diff --git a/code/validation/check_truth.txt b/code/validation/check_truth.txt index 2ec370de3..a62f1c5bf 100644 --- a/code/validation/check_truth.txt +++ b/code/validation/check_truth.txt @@ -11151,3 +11151,30 @@ Error(s) in '/home/runner/work/covid19-forecast-hub-europe/covid19-forecast-hub- - The following locations are missing: ['Czechia']. +Latest check of truth data: 2024-05-26 + +WARNING +Error(s) in '/home/runner/work/covid19-forecast-hub-europe/covid19-forecast-hub-europe/data-truth/ECDC/truncated_ECDC-Incident Deaths.csv' at 2024-05-18: + +- The following locations are missing: ['Austria', 'Belgium', 'Croatia', 'Czechia', 'Denmark', 'France', 'Greece', 'Hungary', 'Iceland', 'Ireland', 'Italy', 'Latvia', 'Luxembourg', 'Malta', 'Netherlands', 'Norway', 'Poland', 'Slovakia', 'Slovenia', 'Sweden']. + +WARNING +Error(s) in '/home/runner/work/covid19-forecast-hub-europe/covid19-forecast-hub-europe/data-truth/ECDC/truth_ECDC-Incident Cases.csv' at 2024-05-18: + +- The following locations are missing: ['Belgium', 'Denmark', 'France', 'Iceland', 'Latvia', 'Luxembourg']. + +WARNING +Error(s) in '/home/runner/work/covid19-forecast-hub-europe/covid19-forecast-hub-europe/data-truth/ECDC/truth_ECDC-Incident Deaths.csv' at 2024-05-18: + +- The following locations are missing: ['Austria', 'Belgium', 'Denmark', 'France', 'Hungary', 'Iceland', 'Latvia', 'Luxembourg', 'Netherlands', 'Norway', 'Poland']. + +WARNING +Error(s) in '/home/runner/work/covid19-forecast-hub-europe/covid19-forecast-hub-europe/data-truth/ECDC/truncated_ECDC-Incident Cases.csv' at 2024-05-18: + +- The following locations are missing: ['Belgium', 'Croatia', 'Cyprus', 'Denmark', 'France', 'Iceland', 'Italy', 'Latvia', 'Luxembourg', 'Netherlands', 'Norway', 'Slovakia']. + +WARNING +Error(s) in '/home/runner/work/covid19-forecast-hub-europe/covid19-forecast-hub-europe/data-truth/OWID/truth_OWID-Incident Hospitalizations.csv' at 2024-05-25: + +- The following locations are missing: ['Netherlands']. + diff --git a/data-truth/plots/Cases.svg b/data-truth/plots/Cases.svg index 3aadcf9e7..9ae7e1514 100644 --- a/data-truth/plots/Cases.svg +++ b/data-truth/plots/Cases.svg @@ -127,8 +127,8 @@ - - + + diff --git a/data-truth/plots/Deaths.svg b/data-truth/plots/Deaths.svg index f70dfab70..cc006d0b1 100644 --- a/data-truth/plots/Deaths.svg +++ b/data-truth/plots/Deaths.svg @@ -212,8 +212,7 @@ - - + @@ -355,8 +354,8 @@ - - + + diff --git a/data-truth/plots/Hospitalisations.svg b/data-truth/plots/Hospitalisations.svg index 2e18f91a9..61ba5fc88 100644 --- a/data-truth/plots/Hospitalisations.svg +++ b/data-truth/plots/Hospitalisations.svg @@ -24,107 +24,107 @@ - - + + - - - - - - - - - - - - - - - - - - - - + + + + + + + + + + + + + + + + + + + + - - + + - - - - - - - - - - - - - - - - - + + + + + + + + + + + + + + + + + + + - - + + - - -Czechia + + +Czechia - - + + - - -Netherlands + + +Netherlands - - - - -01 -Apr -2024 -15 -01 -May -15 - - - - -01 -Apr -2024 -15 -01 -May -15 -0 -50 -100 - - - + + + +15 +Apr +2024 +01 +May +15 + + + +15 +Apr +2024 +01 +May +15 +0 +30 +60 +90 + + + + 0 5 10 diff --git a/data-truth/plots/revisions-Cases.svg b/data-truth/plots/revisions-Cases.svg index 34a9e9a48..82a7edac8 100644 --- a/data-truth/plots/revisions-Cases.svg +++ b/data-truth/plots/revisions-Cases.svg @@ -45,16 +45,14 @@ + + + + + + - - - - - - - - - + @@ -81,14 +79,10 @@ - - - - - - - - + + + + @@ -116,15 +110,11 @@ - - - - - - - - - + + + + + @@ -153,15 +143,11 @@ - - - - - - - - - + + + + + @@ -191,15 +177,11 @@ - - - - - - - - - + + + + + @@ -230,15 +212,11 @@ - - - - - - - - - + + + + + @@ -268,23 +246,15 @@ - + - + - + - + - - - - - - - - - + @@ -311,15 +281,11 @@ - - - - - - - - - + + + + + @@ -347,15 +313,11 @@ - - - - - - - - - + + + + + @@ -381,15 +343,11 @@ - - - - - - - - - + + + + + @@ -419,15 +377,11 @@ - - - - - - - - - + + + + + @@ -452,18 +406,10 @@ - - - - - - - - @@ -488,15 +434,11 @@ - - - - - - - - - + + + + + @@ -524,15 +466,11 @@ - - - - - - - - - + + + + + @@ -542,32 +480,28 @@ - - - + + + - - - - + + + + - - - - - - - - - + + + + + @@ -594,12 +528,10 @@ - - - - - - + + + + @@ -624,13 +556,11 @@ + + - - - - @@ -659,15 +589,11 @@ - - - - - - - - - + + + + + @@ -696,15 +622,11 @@ - - - - - - - - - + + + + + @@ -731,15 +653,11 @@ - - - - - - - - - + + + + + @@ -766,15 +684,11 @@ - - - - - - - - - + + + + + @@ -799,9 +713,8 @@ - - - + + @@ -826,7 +739,7 @@ - + @@ -855,15 +768,11 @@ - - - - - - - - - + + + + + @@ -891,15 +800,11 @@ - - - - - - - - - + + + + + @@ -926,15 +831,11 @@ - - - - - - - - - + + + + + @@ -953,7 +854,7 @@ - + @@ -963,15 +864,11 @@ - - - - - - - - - + + + + + @@ -999,31 +896,19 @@ - + - + - + - + - - - - - - - - - - - - - + @@ -1052,15 +937,11 @@ - - - - - - - - - + + + + + @@ -1517,7 +1398,7 @@ 0 5000 10000 -15000 +15000 20000 0 5 @@ -1586,9 +1467,9 @@ 50 100 150 -0 -500 -1000 +0 +500 +1000 1500 0 2500 @@ -1635,24 +1516,16 @@ 4000 End of MMWR week Cases -Commit date - - - - - - - - - -2024-03-16 -2024-03-23 -2024-04-06 -2024-04-13 -2024-04-20 -2024-04-27 -2024-05-04 -2024-05-18 -2024-05-25 +Commit date + + + + + +2024-04-07 +2024-04-21 +2024-04-28 +2024-05-05 +2024-05-26 diff --git a/data-truth/plots/revisions-Deaths.svg b/data-truth/plots/revisions-Deaths.svg index 256873d92..d3f88a5f0 100644 --- a/data-truth/plots/revisions-Deaths.svg +++ b/data-truth/plots/revisions-Deaths.svg @@ -44,11 +44,8 @@ - - - - - + + @@ -77,14 +74,8 @@ - - - - - - - - + + @@ -117,39 +108,15 @@ - + - + - - - - - - - - - - - - - - - - - - - - - - - - - + @@ -177,15 +144,9 @@ - - - - - - - - - + + + @@ -213,15 +174,9 @@ - - - - - - - - - + + + @@ -245,12 +200,6 @@ - - - - - - @@ -278,23 +227,11 @@ - + - + - - - - - - - - - - - - - + @@ -332,12 +269,6 @@ - - - - - - @@ -364,15 +295,9 @@ - - - - - - - - - + + + @@ -403,15 +328,9 @@ - - - - - - - - - + + + @@ -444,21 +363,6 @@ - - - - - - - - - - - - - - - @@ -486,15 +390,9 @@ - - - - - - - - - + + + @@ -521,15 +419,9 @@ - - - - - - - - - + + + @@ -560,15 +452,9 @@ - - - - - - - - - + + + @@ -594,18 +480,10 @@ - - - - - - - - - - - - + + + + @@ -629,20 +507,12 @@ + + + + - - - - - - - - - - - - @@ -671,15 +541,9 @@ - - - - - - - - - + + + @@ -724,15 +588,9 @@ - - - - - - - - - + + + @@ -759,15 +617,9 @@ - - - - - - - - - + + + @@ -791,9 +643,7 @@ - - - + @@ -820,7 +670,7 @@ - + @@ -865,15 +715,9 @@ - - - - - - - - - + + + @@ -901,15 +745,9 @@ - - - - - - - - - + + + @@ -940,15 +778,9 @@ - - - - - - - - - + + + @@ -979,31 +811,13 @@ - + - + - - - - - - - - - - - - - - - - - - - + @@ -1032,15 +846,9 @@ - - - - - - - - - + + + @@ -1600,24 +1408,12 @@ 60 End of MMWR week Deaths -Commit date - - - - - - - - - -2024-03-16 -2024-03-23 -2024-04-06 -2024-04-13 -2024-04-20 -2024-04-27 -2024-05-04 -2024-05-18 -2024-05-25 +Commit date + + + +2024-04-07 +2024-05-05 +2024-05-26 diff --git a/data-truth/plots/revisions-Hospitalizations.svg b/data-truth/plots/revisions-Hospitalizations.svg index 29a86bf14..cceda8c63 100644 --- a/data-truth/plots/revisions-Hospitalizations.svg +++ b/data-truth/plots/revisions-Hospitalizations.svg @@ -32,32 +32,32 @@ - - - - - - + + + + + + - - - - - - - - - - - - - - - - + + + + + + + + + + + + + + + + @@ -127,7 +127,7 @@ - + @@ -163,11 +163,11 @@ Netherlands -Apr 2023 -Jul 2023 -Oct 2023 -Jan 2024 -Apr 2024 +Apr 2023 +Jul 2023 +Oct 2023 +Jan 2024 +Apr 2024 Apr 2023 Jul 2023 Oct 2023 @@ -203,16 +203,16 @@ -2024-03-16 -2024-03-23 -2024-03-30 -2024-04-06 -2024-04-13 -2024-04-20 -2024-04-27 -2024-05-04 -2024-05-11 -2024-05-18 -2024-05-25 +2024-03-17 +2024-03-24 +2024-03-31 +2024-04-07 +2024-04-14 +2024-04-21 +2024-04-28 +2024-05-05 +2024-05-12 +2024-05-19 +2024-05-26