From cd79948bde00675b73952ac98a124f6e4c94e57b Mon Sep 17 00:00:00 2001 From: GitHub Action - check truth Date: Tue, 12 Dec 2023 13:23:58 +0000 Subject: [PATCH] Check truth data --- code/validation/check_truth.txt | 32 + data-truth/README.md | 10 +- data-truth/plots/Cases.svg | 2197 +++++++++-------- data-truth/plots/Deaths.svg | 840 ++++--- data-truth/plots/Hospitalisations.svg | 28 +- data-truth/plots/revisions-Cases.svg | 763 +++--- data-truth/plots/revisions-Deaths.svg | 1680 ++++++------- .../plots/revisions-Hospitalizations.svg | 96 +- 8 files changed, 2860 insertions(+), 2786 deletions(-) diff --git a/code/validation/check_truth.txt b/code/validation/check_truth.txt index 611c130cb4..773a113aa0 100644 --- a/code/validation/check_truth.txt +++ b/code/validation/check_truth.txt @@ -5877,3 +5877,35 @@ Error(s) in '/home/runner/work/covid19-forecast-hub-europe/covid19-forecast-hub- - The following locations are missing: ['Estonia', 'Greece', 'Ireland', 'Italy', 'Netherlands', 'Slovakia']. +Latest check of truth data: 2023-12-12 + +WARNING +Error(s) in '/home/runner/work/covid19-forecast-hub-europe/covid19-forecast-hub-europe/data-truth/ECDC/truncated_ECDC-Incident Deaths.csv' at 2023-12-02: + +- The following locations are missing: ['Austria', 'Belgium', 'Croatia', 'Cyprus', 'Czechia', 'Denmark', 'Finland', 'France', 'Germany', 'Greece', 'Hungary', 'Iceland', 'Ireland', 'Italy', 'Latvia', 'Liechtenstein', 'Luxembourg', 'Malta', 'Netherlands', 'Norway', 'Portugal', 'Slovakia', 'Slovenia', 'Spain', 'Sweden']. + +WARNING +Error(s) in '/home/runner/work/covid19-forecast-hub-europe/covid19-forecast-hub-europe/data-truth/ECDC/truncated_ECDC-Incident Cases.csv' at 2023-12-02: + +- The following locations are missing: ['Austria', 'Belgium', 'Croatia', 'Cyprus', 'Denmark', 'Finland', 'France', 'Germany', 'Hungary', 'Iceland', 'Italy', 'Latvia', 'Lithuania', 'Malta', 'Netherlands', 'Norway', 'Portugal', 'Slovenia', 'Spain']. + +WARNING +Error(s) in '/home/runner/work/covid19-forecast-hub-europe/covid19-forecast-hub-europe/data-truth/ECDC/truth_ECDC-Incident Deaths.csv' at 2023-12-02: + +- The following locations are missing: ['Austria', 'Belgium', 'Croatia', 'Cyprus', 'Denmark', 'Finland', 'France', 'Germany', 'Iceland', 'Italy', 'Latvia', 'Liechtenstein', 'Luxembourg', 'Netherlands', 'Norway', 'Slovakia', 'Spain']. + +WARNING +Error(s) in '/home/runner/work/covid19-forecast-hub-europe/covid19-forecast-hub-europe/data-truth/ECDC/truth_ECDC-Incident Cases.csv' at 2023-12-02: + +- The following locations are missing: ['Austria', 'Croatia', 'Cyprus', 'Denmark', 'Finland', 'France', 'Germany', 'Latvia', 'Spain']. + +WARNING +Error(s) in '/home/runner/work/covid19-forecast-hub-europe/covid19-forecast-hub-europe/data-truth/OWID/truncated_OWID-Incident Hospitalizations.csv' at 2023-12-09: + +- The following locations are missing: ['Czechia', 'Estonia', 'Greece', 'Ireland', 'Italy', 'Slovakia']. + +WARNING +Error(s) in '/home/runner/work/covid19-forecast-hub-europe/covid19-forecast-hub-europe/data-truth/OWID/truth_OWID-Incident Hospitalizations.csv' at 2023-12-09: + +- The following locations are missing: ['Estonia', 'Greece', 'Ireland', 'Italy', 'Slovakia']. + diff --git a/data-truth/README.md b/data-truth/README.md index c490e36604..e74f5a2269 100644 --- a/data-truth/README.md +++ b/data-truth/README.md @@ -80,13 +80,13 @@ indicating data expecting to be substanially revised. Netherlands, Norway, Poland, Portugal, Romania, Slovakia, Slovenia, Spain, Sweden -- **Data warning!** Recent missing data for cases in: Austria, Cyprus, - Finland, France, Germany, Italy, Liechtenstein, Luxembourg, - Netherlands, and Spain +- **Data warning!** Recent missing data for cases in: Austria, Croatia, + Cyprus, Denmark, Finland, France, Germany, Latvia, and Spain - **Data warning!** Recent missing data for deaths in: Austria, Belgium, - Cyprus, Denmark, Finland, France, Germany, Iceland, Italy, - Liechtenstein, Luxembourg, Netherlands, Norway, Slovakia, and Spain + Croatia, Cyprus, Denmark, Finland, France, Germany, Iceland, Italy, + Latvia, Liechtenstein, Luxembourg, Netherlands, Norway, Slovakia, and + Spain We further evaluate forecasts of cases and deaths against data provided [ECDC](https://www.ecdc.europa.eu/), which we recommend using as the diff --git a/data-truth/plots/Cases.svg b/data-truth/plots/Cases.svg index 20e1b3be25..5e33f66222 100644 --- a/data-truth/plots/Cases.svg +++ b/data-truth/plots/Cases.svg @@ -21,1410 +21,1463 @@ - 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- -2023-10-23 -2023-12-11 +Commit date + +2023-12-12 diff --git a/data-truth/plots/revisions-Hospitalizations.svg b/data-truth/plots/revisions-Hospitalizations.svg index b2b66e5967..c543a43c0c 100644 --- a/data-truth/plots/revisions-Hospitalizations.svg +++ b/data-truth/plots/revisions-Hospitalizations.svg @@ -51,7 +51,9 @@ - + + + @@ -82,6 +84,8 @@ + + @@ -95,25 +99,27 @@ - - - - + + + + - - - - - - - - - - - + + + + + + + + + + + + + @@ -144,6 +150,8 @@ + + @@ -172,7 +180,9 @@ - + + + @@ -204,6 +214,8 @@ + + @@ -234,6 +246,8 @@ + + @@ -303,6 +317,8 @@ + + @@ -336,6 +352,8 @@ + + @@ -465,9 +483,9 @@ Hungary -Apr -Jul -Oct +Apr +Jul +Oct Apr Jul Oct @@ -538,22 +556,26 @@ 1200 End of MMWR week Hospitalizations -Commit date - - - - - - - - -2023-10-02 -2023-10-09 -2023-10-23 -2023-10-30 -2023-11-06 -2023-11-13 -2023-11-20 -2023-12-11 +Commit date + + + + + + + + + + +2023-10-03 +2023-10-10 +2023-10-24 +2023-10-31 +2023-11-07 +2023-11-14 +2023-11-21 +2023-11-28 +2023-12-05 +2023-12-12