From c747a8b7229d9667541c78b72fc3a999aa47691b Mon Sep 17 00:00:00 2001 From: GitHub Action - check truth Date: Thu, 28 Mar 2024 13:20:21 +0000 Subject: [PATCH] Check truth data --- code/validation/check_truth.txt | 32 ++++++++ data-truth/README.md | 3 + data-truth/plots/Hospitalisations.svg | 23 +++--- .../plots/revisions-Hospitalizations.svg | 74 +++++++++---------- 4 files changed, 81 insertions(+), 51 deletions(-) diff --git a/code/validation/check_truth.txt b/code/validation/check_truth.txt index bb72491aa4..09631e3127 100644 --- a/code/validation/check_truth.txt +++ b/code/validation/check_truth.txt @@ -9318,3 +9318,35 @@ Error(s) in '/home/runner/work/covid19-forecast-hub-europe/covid19-forecast-hub- - The following locations are missing: ['Italy', 'Netherlands']. +Latest check of truth data: 2024-03-28 + +WARNING +Error(s) in '/home/runner/work/covid19-forecast-hub-europe/covid19-forecast-hub-europe/data-truth/ECDC/truncated_ECDC-Incident Deaths.csv' at 2024-03-16: + +- The following locations are missing: ['Belgium', 'Cyprus', 'Czechia', 'Denmark', 'Finland', 'Greece', 'Hungary', 'Iceland', 'Ireland', 'Italy', 'Liechtenstein', 'Luxembourg', 'Malta', 'Netherlands', 'Norway', 'Portugal', 'Slovakia', 'Slovenia', 'Sweden']. + +WARNING +Error(s) in '/home/runner/work/covid19-forecast-hub-europe/covid19-forecast-hub-europe/data-truth/ECDC/truth_ECDC-Incident Cases.csv' at 2024-03-16: + +- The following locations are missing: ['Cyprus', 'Denmark', 'Finland']. + +WARNING +Error(s) in '/home/runner/work/covid19-forecast-hub-europe/covid19-forecast-hub-europe/data-truth/ECDC/truncated_ECDC-Incident Cases.csv' at 2024-03-16: + +- The following locations are missing: ['Cyprus', 'Czechia', 'Denmark', 'Finland', 'Italy', 'Netherlands', 'Portugal', 'Slovakia']. + +WARNING +Error(s) in '/home/runner/work/covid19-forecast-hub-europe/covid19-forecast-hub-europe/data-truth/ECDC/truth_ECDC-Incident Deaths.csv' at 2024-03-16: + +- The following locations are missing: ['Belgium', 'Cyprus', 'Denmark', 'Finland', 'Hungary', 'Iceland', 'Luxembourg', 'Netherlands', 'Norway']. + +WARNING +Error(s) in '/home/runner/work/covid19-forecast-hub-europe/covid19-forecast-hub-europe/data-truth/OWID/truncated_OWID-Incident Hospitalizations.csv' at 2024-03-23: + +- The following locations are missing: ['Czechia', 'Italy']. + +WARNING +Error(s) in '/home/runner/work/covid19-forecast-hub-europe/covid19-forecast-hub-europe/data-truth/OWID/truth_OWID-Incident Hospitalizations.csv' at 2024-03-23: + +- The following locations are missing: ['Italy']. + diff --git a/data-truth/README.md b/data-truth/README.md index 3b33cc19bb..5655ef6c4a 100644 --- a/data-truth/README.md +++ b/data-truth/README.md @@ -61,6 +61,9 @@ cannot take into account the truncation of the data. The latest hospitalisation data is plotted below, with the dashed line indicating data expecting to be substanially revised. + ## `geom_line()`: Each group consists of only one observation. + ## ℹ Do you need to adjust the group aesthetic? +
Plot of hospitalisations diff --git a/data-truth/plots/Hospitalisations.svg b/data-truth/plots/Hospitalisations.svg index 13c0783edd..98b3db1bc7 100644 --- a/data-truth/plots/Hospitalisations.svg +++ b/data-truth/plots/Hospitalisations.svg @@ -89,23 +89,20 @@ - - - - + + + - - - + + - @@ -176,13 +173,11 @@ Mar 15 0 -100 -200 -300 +50 +100 - - - + + 0 100 200 diff --git a/data-truth/plots/revisions-Hospitalizations.svg b/data-truth/plots/revisions-Hospitalizations.svg index e9fb073319..5e2f831930 100644 --- a/data-truth/plots/revisions-Hospitalizations.svg +++ b/data-truth/plots/revisions-Hospitalizations.svg @@ -97,31 +97,31 @@ - - - - - + + + + + - - - - - - - - - - - - - - - - + + + + + + + + + + + + + + + + @@ -462,11 +462,11 @@ Hungary -Apr 2023 -Jul 2023 -Oct 2023 -Jan 2024 -Apr 2024 +Apr 2023 +Jul 2023 +Oct 2023 +Jan 2024 +Apr 2024 Apr Jul Oct @@ -549,16 +549,16 @@ -2024-01-17 -2024-01-24 -2024-01-31 -2024-02-07 -2024-02-14 -2024-02-21 -2024-02-28 -2024-03-06 -2024-03-13 -2024-03-20 -2024-03-27 +2024-01-18 +2024-01-25 +2024-02-01 +2024-02-08 +2024-02-15 +2024-02-22 +2024-02-29 +2024-03-07 +2024-03-14 +2024-03-21 +2024-03-28