From 726bf1c61fbba392a84a4422b93e499a03d4195a Mon Sep 17 00:00:00 2001 From: GitHub Action - check truth Date: Sat, 25 May 2024 13:19:18 +0000 Subject: [PATCH] Check truth data --- code/validation/check_truth.txt | 27 + data-truth/README.md | 18 +- data-truth/plots/Cases.svg | 1918 +++++++------ data-truth/plots/Deaths.svg | 1708 ++++++------ data-truth/plots/revisions-Cases.svg | 1481 +++++----- data-truth/plots/revisions-Deaths.svg | 2413 +++++++++-------- .../plots/revisions-Hospitalizations.svg | 30 +- 7 files changed, 3960 insertions(+), 3635 deletions(-) diff --git a/code/validation/check_truth.txt b/code/validation/check_truth.txt index 777575559..2ec370de3 100644 --- a/code/validation/check_truth.txt +++ b/code/validation/check_truth.txt @@ -11124,3 +11124,30 @@ Error(s) in '/home/runner/work/covid19-forecast-hub-europe/covid19-forecast-hub- - The following locations are missing: ['Czechia']. +Latest check of truth data: 2024-05-25 + +WARNING +Error(s) in '/home/runner/work/covid19-forecast-hub-europe/covid19-forecast-hub-europe/data-truth/ECDC/truncated_ECDC-Incident Deaths.csv' at 2024-05-18: + +- The following locations are missing: ['Austria', 'Belgium', 'Croatia', 'Czechia', 'Denmark', 'France', 'Greece', 'Hungary', 'Iceland', 'Ireland', 'Italy', 'Latvia', 'Liechtenstein', 'Luxembourg', 'Malta', 'Netherlands', 'Norway', 'Poland', 'Slovakia', 'Slovenia', 'Sweden']. + +WARNING +Error(s) in '/home/runner/work/covid19-forecast-hub-europe/covid19-forecast-hub-europe/data-truth/ECDC/truth_ECDC-Incident Cases.csv' at 2024-05-18: + +- The following locations are missing: ['Belgium', 'Denmark', 'France', 'Iceland', 'Latvia', 'Luxembourg']. + +WARNING +Error(s) in '/home/runner/work/covid19-forecast-hub-europe/covid19-forecast-hub-europe/data-truth/ECDC/truth_ECDC-Incident Deaths.csv' at 2024-05-18: + +- The following locations are missing: ['Austria', 'Belgium', 'Denmark', 'France', 'Hungary', 'Iceland', 'Latvia', 'Luxembourg', 'Netherlands', 'Norway', 'Poland']. + +WARNING +Error(s) in '/home/runner/work/covid19-forecast-hub-europe/covid19-forecast-hub-europe/data-truth/ECDC/truncated_ECDC-Incident Cases.csv' at 2024-05-18: + +- The following locations are missing: ['Belgium', 'Croatia', 'Cyprus', 'Denmark', 'France', 'Iceland', 'Italy', 'Latvia', 'Luxembourg', 'Netherlands', 'Norway', 'Slovakia']. + +WARNING +Error(s) in '/home/runner/work/covid19-forecast-hub-europe/covid19-forecast-hub-europe/data-truth/OWID/truncated_OWID-Incident Hospitalizations.csv' at 2024-05-18: + +- The following locations are missing: ['Czechia']. + diff --git a/data-truth/README.md b/data-truth/README.md index df3317de7..34e305592 100644 --- a/data-truth/README.md +++ b/data-truth/README.md @@ -69,19 +69,19 @@ indicating data expecting to be substanially revised. ### Cases and deaths - Cases: Austria, Belgium, Bulgaria, Croatia, Cyprus, Czechia, Denmark, - Estonia, Greece, Hungary, Iceland, Ireland, Italy, Liechtenstein, - Lithuania, Luxembourg, Malta, Netherlands, Norway, Poland, Portugal, - Romania, Slovakia, Slovenia, Sweden + Estonia, Greece, Hungary, Iceland, Ireland, Italy, Latvia, + Liechtenstein, Lithuania, Luxembourg, Malta, Netherlands, Norway, + Poland, Portugal, Romania, Slovakia, Slovenia, Sweden - Deaths: Bulgaria, Croatia, Cyprus, Czechia, Denmark, Estonia, Greece, - Hungary, Ireland, Italy, Liechtenstein, Lithuania, Malta, Poland, - Portugal, Romania, Slovakia, Slovenia, Sweden + Hungary, Ireland, Italy, Latvia, Liechtenstein, Lithuania, Malta, + Poland, Portugal, Romania, Slovakia, Slovenia, Sweden -- **Data warning!** Recent missing data for cases in: Cyprus, Denmark, - Malta, and Slovenia +- **Data warning!** Recent missing data for cases in: Belgium, Denmark, + Iceland, Latvia, and Luxembourg -- **Data warning!** Recent missing data for deaths in: Cyprus, Denmark, - Hungary, Poland, and Slovenia +- **Data warning!** Recent missing data for deaths in: Denmark, Hungary, + Latvia, and Poland We further evaluate forecasts of cases and deaths against data provided [ECDC](https://www.ecdc.europa.eu/), which we recommend using as the diff --git a/data-truth/plots/Cases.svg b/data-truth/plots/Cases.svg index b6e91909e..3aadcf9e7 100644 --- a/data-truth/plots/Cases.svg +++ b/data-truth/plots/Cases.svg @@ -24,1163 +24,1313 @@ - - + + - - - - - - - - - - - - - - - - - - - - + + + + + + + + + + + + + + + + + + + + - - + + - - - - - - - - - - - - - - - - - - - + + + + + + + + + + + + + + + + + - - + + - - - - - - - - - - - - - - - - - - - - + + + + + + + + + + + + + + + + + + + + - - + + - - - - - - - - - - - - - - - - - - + + + + + + + + + + + + + + + + + + + + + - - + + - - - - - - - - - - - - - - - - - - - - - + + + + + + + + + + + + + + + + + - - + + - - - - - - - - - - - - - - - - - - - - - + + + + + + + + + + + + + + + + + + + + - - + + - - - - - - - - - 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