From 5bc15a1ca0fdcc60b963501626a8f5f4e6e87e9e Mon Sep 17 00:00:00 2001 From: GitHub Action - check truth Date: Sun, 7 Apr 2024 13:20:29 +0000 Subject: [PATCH] Check truth data --- code/validation/check_truth.txt | 32 ++ data-truth/plots/Cases.svg | 3 +- data-truth/plots/Deaths.svg | 18 +- data-truth/plots/Hospitalisations.svg | 279 +++++++------- data-truth/plots/revisions-Cases.svg | 361 ++++++------------ data-truth/plots/revisions-Deaths.svg | 307 +++------------ .../plots/revisions-Hospitalizations.svg | 76 ++-- 7 files changed, 388 insertions(+), 688 deletions(-) diff --git a/code/validation/check_truth.txt b/code/validation/check_truth.txt index 99133f51d2..8b0c0d159b 100644 --- a/code/validation/check_truth.txt +++ b/code/validation/check_truth.txt @@ -9638,3 +9638,35 @@ Error(s) in '/home/runner/work/covid19-forecast-hub-europe/covid19-forecast-hub- - The following locations are missing: ['Italy']. +Latest check of truth data: 2024-04-07 + +WARNING +Error(s) in '/home/runner/work/covid19-forecast-hub-europe/covid19-forecast-hub-europe/data-truth/ECDC/truth_ECDC-Incident Deaths.csv' at 2024-03-30: + +- The following locations are missing: ['Belgium', 'Cyprus', 'Denmark', 'Finland', 'France', 'Hungary', 'Iceland', 'Luxembourg', 'Netherlands', 'Norway']. + +WARNING +Error(s) in '/home/runner/work/covid19-forecast-hub-europe/covid19-forecast-hub-europe/data-truth/ECDC/truncated_ECDC-Incident Cases.csv' at 2024-03-30: + +- The following locations are missing: ['Cyprus', 'Czechia', 'Denmark', 'Finland', 'France', 'Hungary', 'Italy', 'Netherlands', 'Slovakia']. + +WARNING +Error(s) in '/home/runner/work/covid19-forecast-hub-europe/covid19-forecast-hub-europe/data-truth/ECDC/truth_ECDC-Incident Cases.csv' at 2024-03-30: + +- The following locations are missing: ['Cyprus', 'Denmark', 'Finland', 'France', 'Hungary']. + +WARNING +Error(s) in '/home/runner/work/covid19-forecast-hub-europe/covid19-forecast-hub-europe/data-truth/ECDC/truncated_ECDC-Incident Deaths.csv' at 2024-03-30: + +- The following locations are missing: ['Belgium', 'Cyprus', 'Czechia', 'Denmark', 'Finland', 'France', 'Greece', 'Hungary', 'Iceland', 'Ireland', 'Italy', 'Liechtenstein', 'Luxembourg', 'Malta', 'Netherlands', 'Norway', 'Poland', 'Slovakia', 'Slovenia', 'Sweden']. + +WARNING +Error(s) in '/home/runner/work/covid19-forecast-hub-europe/covid19-forecast-hub-europe/data-truth/OWID/truncated_OWID-Incident Hospitalizations.csv' at 2024-03-30: + +- The following locations are missing: ['Italy']. + +WARNING +Error(s) in '/home/runner/work/covid19-forecast-hub-europe/covid19-forecast-hub-europe/data-truth/OWID/truth_OWID-Incident Hospitalizations.csv' at 2024-04-06: + +- The following locations are missing: ['Italy', 'Netherlands']. + diff --git a/data-truth/plots/Cases.svg b/data-truth/plots/Cases.svg index a8a75409c5..7a3457c2cf 100644 --- a/data-truth/plots/Cases.svg +++ b/data-truth/plots/Cases.svg @@ -538,8 +538,7 @@ - - + diff --git a/data-truth/plots/Deaths.svg b/data-truth/plots/Deaths.svg index 6b399ab0aa..83a9c38e36 100644 --- a/data-truth/plots/Deaths.svg +++ b/data-truth/plots/Deaths.svg @@ -129,8 +129,7 @@ - - + @@ -212,8 +211,8 @@ - - + + @@ -468,8 +467,8 @@ - - + + @@ -555,7 +554,8 @@ - + + @@ -582,8 +582,8 @@ - - + + diff --git a/data-truth/plots/Hospitalisations.svg b/data-truth/plots/Hospitalisations.svg index 9b3b66022e..09a5fc3d9b 100644 --- a/data-truth/plots/Hospitalisations.svg +++ b/data-truth/plots/Hospitalisations.svg @@ -21,185 +21,178 @@ - + - - + + - - - - - - - - - - - - - - - - - - - - - + + + + + + + + + + + + + + + + + + + + + - - + + - - - - - - - - - - - - - - - - - - - + + + + + + + + + + + + + + + + + - - + + - - - - - - - - - - - - - - - - - - + + + + + + + + + + + + + + + + + - - + + - - -Czechia + + +Czechia - - + + - - -Italy + + +Italy - - + + - - -Netherlands + + +Netherlands - - - - -15 -Feb -2024 -01 -Mar -15 -01 -Apr - - - - -15 -Feb -2024 -01 -Mar -15 -01 -Apr - - - - -15 -Feb -2024 -01 -Mar -15 -01 -Apr -0 -100 -200 -300 - - - - -0 -100 -200 -300 - - - - -0 -30 -60 -90 -120 - - - - - -End date of week + + + + +15 +Feb +2024 +01 +Mar +15 +01 +Apr + + + + +15 +Feb +2024 +01 +Mar +15 +01 +Apr + + + + +15 +Feb +2024 +01 +Mar +15 +01 +Apr +0 +100 +200 + + + +0 +100 +200 + + + +0 +20 +40 +60 +80 + + + + + +End date of week Weekly number of hospitalisations diff --git a/data-truth/plots/revisions-Cases.svg b/data-truth/plots/revisions-Cases.svg index 57c4b9fb66..aff5c9d34f 100644 --- a/data-truth/plots/revisions-Cases.svg +++ b/data-truth/plots/revisions-Cases.svg @@ -42,7 +42,6 @@ - @@ -67,14 +66,10 @@ - + - - - - - - + + @@ -101,15 +96,11 @@ - - - - - - - - - + + + + + @@ -137,15 +128,11 @@ - - - - - - - - - + + + + + @@ -174,15 +161,11 @@ - - - - - - - - - + + + + + @@ -212,15 +195,11 @@ - + - - - - - - - + + + @@ -251,21 +230,13 @@ - + - + - + - - - - - - - - - + @@ -291,15 +262,11 @@ - - - - - - - - - + + + + + @@ -326,15 +293,11 @@ - - - - - - - - - + + + + + @@ -359,15 +322,11 @@ - - - - - - - - - + + + + + @@ -396,15 +355,11 @@ - - - - - - - - - + + + + + @@ -437,14 +392,6 @@ - - - - - - - - @@ -468,15 +415,11 @@ - - - - - - - - - + + + + + @@ -504,14 +447,10 @@ - - - - - - - - + + + + @@ -537,15 +476,11 @@ - - - - - - - - - + + + + + @@ -571,8 +506,6 @@ - - @@ -599,8 +532,7 @@ - - + @@ -628,15 +560,11 @@ - - - - - - - - - + + + + + @@ -664,15 +592,11 @@ - - - + + + - - - - - + @@ -698,15 +622,11 @@ - - - - - - - - - + + + + + @@ -736,11 +656,7 @@ - - - - - + @@ -767,7 +683,6 @@ - @@ -791,7 +706,6 @@ - @@ -819,15 +733,11 @@ - - - - - - - - - + + + + + @@ -851,7 +761,6 @@ - @@ -877,15 +786,11 @@ - - - - - - - - - + + + + + @@ -913,15 +818,11 @@ - - - - - - - - - + + + + + @@ -948,31 +849,19 @@ - + - + - + - + - - - - - - - - - - - - - + @@ -1000,15 +889,11 @@ - - - - - - - - - + + + + + @@ -1035,15 +920,11 @@ - - - - - - - - - + + + + + @@ -1610,24 +1491,16 @@ 4000 End of MMWR week Cases -Commit date - - - - - - - - - -2024-01-27 -2024-02-03 -2024-02-10 -2024-02-24 -2024-03-02 -2024-03-09 -2024-03-16 -2024-03-23 -2024-04-06 +Commit date + + + + + +2024-02-04 +2024-02-11 +2024-03-03 +2024-03-10 +2024-04-07 diff --git a/data-truth/plots/revisions-Deaths.svg b/data-truth/plots/revisions-Deaths.svg index d767263641..61b8ed06ce 100644 --- a/data-truth/plots/revisions-Deaths.svg +++ b/data-truth/plots/revisions-Deaths.svg @@ -46,7 +46,6 @@ - @@ -73,14 +72,8 @@ - - - - - - - - + + @@ -116,35 +109,11 @@ - + - - - - - - - - - - - - - - - - - - - - - - - - - + @@ -172,14 +141,8 @@ - - - - - - - - + + @@ -207,14 +170,8 @@ - - - - - - - - + + @@ -238,12 +195,6 @@ - - - - - - @@ -272,21 +223,9 @@ - + - - - - - - - - - - - - - + @@ -324,12 +263,6 @@ - - - - - - @@ -356,14 +289,8 @@ - - - - - - - - + + @@ -394,14 +321,8 @@ - - - - - - - - + + @@ -436,25 +357,7 @@ - - - - - - - - - - - - - - - - - - - + @@ -464,32 +367,25 @@ - - - - + + + + - - - - + + + - - - - - - - - - + + + @@ -516,14 +412,8 @@ - - - - - - - - + + @@ -554,14 +444,8 @@ - - - - - - - - + + @@ -588,10 +472,6 @@ - - - - @@ -618,8 +498,7 @@ - - + @@ -648,14 +527,8 @@ - - - - - - - - + + @@ -700,14 +573,8 @@ - - - - - - - - + + @@ -735,13 +602,7 @@ - - - - - - - + @@ -767,7 +628,6 @@ - @@ -793,7 +653,6 @@ - @@ -834,7 +693,6 @@ - @@ -862,14 +720,8 @@ - - - - - - - - + + @@ -899,14 +751,8 @@ - - - - - - - - + + @@ -939,28 +785,10 @@ - + - - - - - - - - - - - - - - - - - - - + @@ -989,14 +817,8 @@ - - - - - - - - + + @@ -1027,14 +849,8 @@ - - - - - - - - + + @@ -1535,10 +1351,9 @@ 100 150 200 -0 -5 -10 -15 +5 +10 +15 0 2 4 @@ -1588,24 +1403,12 @@ 60 End of MMWR week Deaths -Commit date - - - - - - - - - -2024-01-27 -2024-02-03 -2024-02-10 -2024-02-24 -2024-03-02 -2024-03-09 -2024-03-16 -2024-03-23 -2024-04-06 +Commit date + + + +2024-01-28 +2024-02-11 +2024-04-07 diff --git a/data-truth/plots/revisions-Hospitalizations.svg b/data-truth/plots/revisions-Hospitalizations.svg index 20cc421f9e..15d64e3529 100644 --- a/data-truth/plots/revisions-Hospitalizations.svg +++ b/data-truth/plots/revisions-Hospitalizations.svg @@ -32,31 +32,31 @@ - - - - - + + + + + - - - - - - - - - - - - - - - - + + + + + + + + + + + + + + + + @@ -117,7 +117,7 @@ - + @@ -483,11 +483,11 @@ Apr Jul Oct -Apr 2023 -Jul 2023 -Oct 2023 -Jan 2024 -Apr 2024 +Apr 2023 +Jul 2023 +Oct 2023 +Jan 2024 +Apr 2024 Apr Jul Oct @@ -549,16 +549,16 @@ -2024-01-27 -2024-02-03 -2024-02-10 -2024-02-17 -2024-02-24 -2024-03-02 -2024-03-09 -2024-03-16 -2024-03-23 -2024-03-30 -2024-04-06 +2024-01-28 +2024-02-04 +2024-02-11 +2024-02-18 +2024-02-25 +2024-03-03 +2024-03-10 +2024-03-17 +2024-03-24 +2024-03-31 +2024-04-07