From 20789eed02b0b5b485c35e373c251522e980ba4f Mon Sep 17 00:00:00 2001 From: GitHub Action - check truth Date: Sun, 3 Dec 2023 13:21:57 +0000 Subject: [PATCH] Check truth data --- code/validation/check_truth.txt | 22 ++ data-truth/plots/Hospitalisations.svg | 265 +++++++-------- data-truth/plots/revisions-Deaths.svg | 303 ++++++++---------- .../plots/revisions-Hospitalizations.svg | 127 ++++---- 4 files changed, 357 insertions(+), 360 deletions(-) diff --git a/code/validation/check_truth.txt b/code/validation/check_truth.txt index 0a36e1f091..e9324bf236 100644 --- a/code/validation/check_truth.txt +++ b/code/validation/check_truth.txt @@ -5674,3 +5674,25 @@ Error(s) in '/home/runner/work/covid19-forecast-hub-europe/covid19-forecast-hub- - The following locations are missing: ['Czechia', 'Estonia', 'Greece', 'Hungary', 'Ireland', 'Italy', 'Malta', 'Slovakia']. +Latest check of truth data: 2023-12-03 + +WARNING +Error(s) in '/home/runner/work/covid19-forecast-hub-europe/covid19-forecast-hub-europe/data-truth/ECDC/truncated_ECDC-Incident Deaths.csv' at 2023-11-18: + +- The following locations are missing: ['Croatia', 'Czechia', 'Denmark', 'Finland', 'Greece', 'Hungary', 'Ireland', 'Italy', 'Latvia', 'Malta', 'Portugal', 'Slovakia', 'Slovenia', 'Sweden']. + +WARNING +Error(s) in '/home/runner/work/covid19-forecast-hub-europe/covid19-forecast-hub-europe/data-truth/ECDC/truncated_ECDC-Incident Cases.csv' at 2023-11-18: + +- The following locations are missing: ['Belgium', 'Croatia', 'Cyprus', 'Denmark', 'Hungary', 'Iceland', 'Italy', 'Latvia', 'Lithuania', 'Malta', 'Netherlands', 'Norway', 'Portugal', 'Slovakia', 'Slovenia']. + +WARNING +Error(s) in '/home/runner/work/covid19-forecast-hub-europe/covid19-forecast-hub-europe/data-truth/OWID/truth_OWID-Incident Hospitalizations.csv' at 2023-12-02: + +- The following locations are missing: ['Estonia', 'Greece', 'Hungary', 'Ireland', 'Italy', 'Malta', 'Slovakia']. + +WARNING +Error(s) in '/home/runner/work/covid19-forecast-hub-europe/covid19-forecast-hub-europe/data-truth/OWID/truncated_OWID-Incident Hospitalizations.csv' at 2023-12-02: + +- The following locations are missing: ['Czechia', 'Estonia', 'Greece', 'Hungary', 'Ireland', 'Italy', 'Malta', 'Slovakia']. + diff --git a/data-truth/plots/Hospitalisations.svg b/data-truth/plots/Hospitalisations.svg index fc1ba7f798..6bab77c362 100644 --- a/data-truth/plots/Hospitalisations.svg +++ b/data-truth/plots/Hospitalisations.svg @@ -30,24 +30,23 @@ - - - - - - - - + + + + + + + - - - - - - - - - + + + + + + + + + @@ -63,18 +62,18 @@ - - - - + + + - - - - + + + + + @@ -86,20 +85,23 @@ - - - - - - - + + + + + + + - - - - - - + + + + + + + + + @@ -115,19 +117,19 @@ - - - - + + + - - - - + + + + + @@ -143,18 +145,18 @@ - - - - + + + - - - - + + + + + @@ -170,18 +172,18 @@ - - - - + + + - - - - + + + + + @@ -197,18 +199,18 @@ - - - - + + + - - - - + + + + + @@ -224,20 +226,20 @@ - - - - + + + - - - - - + + + + + + @@ -252,17 +254,17 @@ - - - - + + + - - - - + + + + + @@ -365,33 +367,42 @@ Greece - - - -15 -Oct -2023 -01 -Nov -15 - - - -15 -Oct -2023 -01 -Nov -15 - - - -15 -Oct -2023 -01 -Nov -15 + + + + +15 +Oct +2023 +01 +Nov +15 +01 +Dec + + + + +15 +Oct +2023 +01 +Nov +15 +01 +Dec + + + + +15 +Oct +2023 +01 +Nov +15 +01 +Dec 0 300 600 @@ -443,15 +454,13 @@ 0 -200 -400 -600 -800 +300 +600 +900 - - - - + + + 0 30 60 @@ -461,11 +470,15 @@ 0 -10 -20 +5 +10 +15 +20 - - + + + + End date of week Weekly number of hospitalisations diff --git a/data-truth/plots/revisions-Deaths.svg b/data-truth/plots/revisions-Deaths.svg index 3cc5588229..561af077d5 100644 --- a/data-truth/plots/revisions-Deaths.svg +++ b/data-truth/plots/revisions-Deaths.svg @@ -52,7 +52,6 @@ - @@ -80,13 +79,12 @@ - + - - - + + + - @@ -113,34 +111,31 @@ + - + - + - + - + - + - - - - - + @@ -167,14 +162,13 @@ - - - - - - - - + + + + + + + @@ -197,13 +191,12 @@ - - - - - - - + + + + + + @@ -232,7 +225,6 @@ - @@ -255,21 +247,19 @@ - + - + - + - + - + - + - - - + @@ -313,7 +303,6 @@ - @@ -336,14 +325,13 @@ - - - - - - - - + + + + + + + @@ -370,14 +358,13 @@ - - - - - - - - + + + + + + + @@ -402,7 +389,7 @@ - + @@ -415,8 +402,6 @@ - - @@ -440,14 +425,13 @@ - - - - - - - - + + + + + + + @@ -470,14 +454,13 @@ - - - - - - - - + + + + + + + @@ -504,14 +487,13 @@ - - - - - - - - + + + + + + + @@ -538,19 +520,17 @@ - + - + - + - + - - @@ -582,7 +562,6 @@ - @@ -606,14 +585,13 @@ - - - - - + + + + + - - + @@ -651,14 +629,13 @@ - - - - - - - - + + + + + + + @@ -681,14 +658,13 @@ - + - + - @@ -720,7 +696,6 @@ - @@ -744,14 +719,13 @@ - - + + - - - - + + + @@ -799,7 +773,6 @@ - @@ -822,14 +795,13 @@ - - - - - - - - + + + + + + + @@ -851,14 +823,13 @@ - - - - - - - - + + + + + + + @@ -897,8 +868,6 @@ - - @@ -923,14 +892,13 @@ - - - - - - - - + + + + + + + @@ -952,14 +920,13 @@ - - - - - - - - + + + + + + + @@ -1469,22 +1436,20 @@ 60 End of MMWR week Deaths -Commit date - - - - - - - - -2023-09-23 -2023-09-30 -2023-10-07 -2023-10-21 -2023-10-28 -2023-11-11 -2023-11-18 -2023-11-25 +Commit date + + + + + + + +2023-09-30 +2023-10-07 +2023-10-21 +2023-10-28 +2023-11-11 +2023-11-18 +2023-11-25 diff --git a/data-truth/plots/revisions-Hospitalizations.svg b/data-truth/plots/revisions-Hospitalizations.svg index 26ba2c57f0..93d73f4de7 100644 --- a/data-truth/plots/revisions-Hospitalizations.svg +++ b/data-truth/plots/revisions-Hospitalizations.svg @@ -28,32 +28,31 @@ - - - - - - - - - - - - - - - - - - - - - - - - - - + + + + + + + + + + + + + + + + + + + + + + + + + @@ -99,27 +98,27 @@ - - - - + + + + - - - - - - - - - - - - - + + + + + + + + + + + + + @@ -284,7 +283,6 @@ - @@ -489,9 +487,9 @@ Hungary -Apr -Jul -Oct +Apr +Jul +Oct Apr Jul Oct @@ -507,9 +505,9 @@ Apr Jul Oct -Apr -Jul -Oct +Apr +Jul +Oct Apr Jul Oct @@ -549,11 +547,10 @@ 100 200 300 -0 -250 -500 -750 -1000 +0 +300 +600 +900 100 200 300 @@ -575,15 +572,15 @@ -2023-09-23 -2023-09-30 -2023-10-07 -2023-10-21 -2023-10-28 -2023-11-04 -2023-11-11 -2023-11-18 -2023-11-25 -2023-12-02 +2023-09-24 +2023-10-01 +2023-10-08 +2023-10-22 +2023-10-29 +2023-11-05 +2023-11-12 +2023-11-19 +2023-11-26 +2023-12-03