ecdc_owid_data.yml

name: "Get data (ECDC/OWID)"
on:
  workflow_dispatch:
  schedule:
    - cron: "7 12 * * *"

jobs:
  get_data:
    if: github.repository_owner == 'european-modelling-hubs'
    runs-on: ubuntu-20.04
    env:
      GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}
    steps:
    - uses: actions/checkout@v3

    - uses: r-lib/actions/setup-r@v2
      with:
        install-r: false
        use-public-rspm: true

    - name: Install system dependencies
      run: |
        sudo apt-get update
        sudo apt-get install libudunits2-dev libcurl4-openssl-dev libgdal-dev libopenblas-dev

    - uses: r-lib/actions/setup-renv@v2

    - name: Hospitalisation Truth
      run: |
        Rscript 'code/auto_download/data-download.R'
        Rscript 'code/auto_download/process-owid-ecdc.r'
        Rscript 'code/auto_download/check-revisions-owid-ecdc.r'

    - name: Commit files
      run: |
        git config user.email "action@github.com"
        git config user.name "GitHub Action - ECDC/OWID data"
        git add --all
        git commit -m "Data update - daily" || echo "No changes to commit"
        git pull --rebase origin main
        git push
        echo "pushed to github"

    - name: Create issue about failure
      if: failure() && github.event_name != 'workflow_dispatch'
      env:
        GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
      run: |
        gh issue reopen 2628