check-truth.yml

name: Check Truth

# Controls when the action will run.
on:
  workflow_dispatch:
  schedule:
    - cron: "0 13 * * *"

jobs:
  build:
    if: github.repository_owner == 'covid19-forecast-hub-europe'
    runs-on: ubuntu-latest
    env:
      RSPM: "https://packagemanager.rstudio.com/cran/__linux__/focal/latest"
      GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}
    steps:
    - uses: actions/checkout@v3

    - uses: r-lib/actions/setup-r@v2
      with:
        install-r: false
        use-public-rspm: true

    - name: Setup Python
      uses: actions/setup-python@v2
      with:
        python-version: '3.x' # Version range or exact version of a Python version to use, using SemVer's version range syntax
        architecture: 'x64' # optional x64 or x86. Defaults to x64 if not specified

    - name: Install python requirements
      run: |
        pip3 install pandas pyprojroot

    - uses: r-lib/actions/setup-pandoc@v2

    - name: Install R system requirements
      run: |
        sudo apt-get update
        sudo apt-get install libcurl4-openssl-dev libicu-dev

    - uses: r-lib/actions/setup-renv@v2

    - name: Verify truth data
      run: |
        python3 code/validation/check_truth.py

    - name: Check data for revisions
      run: |
        Rscript code/auto_download/check_revisions.R

    - name: Create status page
      run: |
        Rscript -e 'rmarkdown::render("data-truth/README.Rmd")'

    - name: Commit files
      run: |
        git config user.email "action@github.com"
        git config user.name "GitHub Action - check truth"
        git add --all
        git commit -m "Check truth data"
        git pull --rebase origin main
        git push
        echo "pushed to github"

    - name: Create issue about failure
      if: failure() && github.event_name != 'workflow_dispatch'
      env:
        GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
      run: |
        gh issue reopen 2630