diff --git a/ChromTime.py b/ChromTime.py index 181624d..2fccc87 100644 --- a/ChromTime.py +++ b/ChromTime.py @@ -635,7 +635,7 @@ def determine_block_boundaries(aligned_fnames, default='narrow', help='punctate: equivalent to \"-b 200 --min-gap 600 --min-dynamic-prior 0.05\", ' 'narrow (default): equivalent to \"-b 200 --min-gap 600 --min-dynamic-prior 0\", ' - 'broad: equivalent to \"-b 500 --min-gap 1500 --merge-peaks\"') + 'broad: equivalent to \"-b 500 --min-gap 1500 --merge-peaks --min-dynamic-prior 0\"') g3.add_argument("-g", "--genome", dest="genome", help="Genome. One of: [%s] or path to a file with chromosome sizes one per line" @@ -754,6 +754,7 @@ def determine_block_boundaries(aligned_fnames, args.bin_size = 500 args.min_gap = 1500 args.merge_peaks = True + args.min_dynamic_prior = 0 elif args.mode == 'punctate': args.bin_size = 200