diff --git a/tests/testthat/test-checks.R b/tests/testthat/test-checks.R deleted file mode 100644 index e9670a6fc..000000000 --- a/tests/testthat/test-checks.R +++ /dev/null @@ -1,143 +0,0 @@ -# Setup for testing ------------------------------------------------------- - -futile.logger::flog.threshold("FATAL") - -# Create reports reports data for estimate_infection() -est_inf <- EpiNow2::example_confirmed[1:10] - -# Create reports reports data for estimate_secondary() -est_sec <- data.table::copy(est_inf)[ - , - `:=`( - primary = confirm, - secondary = round(0.5 * confirm), - confirm = NULL - ) -] - -# Custom test functions --------------------------------------------------- -test_col_specs <- function(dt_list, model = "estimate_infections") { - expect_error( - check_reports_valid(dt_list$bad_col_name, - for_estimate_secondary = for_estimate_secondary - ) - ) - expect_error( - check_reports_valid(dt_list$bad_col_type, - for_estimate_secondary = for_estimate_secondary - ) - ) - expect_error( - check_reports_valid(dt_list$bad_col_entry, - for_estimate_secondary = for_estimate_secondary - ) - ) -} - -test_that("check_reports_valid errors for bad 'confirm' specifications", { - # Bad "confirm" column spec scenarios - confirm_col_dt <- list( - # Bad column name - bad_col_name = data.table::copy(est_inf)[ - , - `:=`( - confirm_bad_name = confirm, - confirm = NULL - ) - ], - # Bad column type - bad_col_type = data.table::copy(est_inf)[ - , - lapply(.SD, as.character), - by = confirm - ], - # Bad column entry - bad_col_entry = data.table::copy(est_inf)[ - , - confirm := -confirm - ] - ) - # Run tests - test_col_specs(confirm_col_dt, model = "estimate_infections") -}) - -test_that("check_reports_valid errors for bad 'date' specifications", { - # Bad "date" column spec scenarios - date_col_dt <- list( - # Bad column name - bad_col_name = data.table::copy(est_inf)[ - , - `:=`( - date_bad_name = date, - date = NULL - ) - ], - # Bad column type - bad_col_type = data.table::copy(est_inf)[ - , - lapply(.SD, as.character), - by = date - ], - # Bad column entry - bad_col_entry = data.table::copy(est_inf)[ - c(1, 3), - date := NA - ] - ) - # Run tests - test_col_specs(date_col_dt, model = "estimate_infections") -}) - -test_that("check_reports_valid errors for bad 'primary' specifications", { - # Bad "primary" column spec scenarios - primary_col_dt <- list( - # Bad column name - bad_col_name = data.table::copy(est_sec)[ - , - `:=`( - primary_bad_name = primary, - primary = NULL - ) - ], - # Bad column type - bad_col_type = data.table::copy(est_sec)[ - , - lapply(.SD, as.character), - by = primary - ], - # Bad column entry - bad_col_entry = data.table::copy(est_sec)[ - , - primary := -primary - ] - ) - # Run tests - test_col_specs(primary_col_dt, model = "estimate_secondary") -}) - -test_that("check_reports_valid errors for bad 'secondary' specifications", { - # Bad "secondary" column spec scenarios - secondary_col_dt <- list( - # Bad column name - bad_col_name = data.table::copy(est_sec)[ - , - `:=`( - secondary_bad_name = primary, - secondary = NULL - ) - ], - # Bad column type - bad_col_type = data.table::copy(est_sec)[ - , - lapply(.SD, as.character), - by = secondary - ], - # Bad column entry - bad_col_entry = data.table::copy(est_sec)[ - , - secondary := -secondary - ] - ) - # Run tests - test_col_specs(secondary_col_dt, model = "estimate_secondary") -})