From 37d1d711591af83729efda2365bcb2770ce6e46a Mon Sep 17 00:00:00 2001 From: jamesaazam Date: Tue, 2 Jul 2024 16:46:51 +0100 Subject: [PATCH] Fix line length --- R/estimate_infections.R | 7 +++---- man/epinow.Rd | 7 +++---- man/get_seeding_time.Rd | 7 +++---- man/regional_epinow.Rd | 7 +++---- man/run_region.Rd | 7 +++---- man/simulate_infections.Rd | 7 +++---- 6 files changed, 18 insertions(+), 24 deletions(-) diff --git a/R/estimate_infections.R b/R/estimate_infections.R index 538af5ff7..35e36946b 100644 --- a/R/estimate_infections.R +++ b/R/estimate_infections.R @@ -22,10 +22,9 @@ #' #' @param reported_cases Deprecated; use `data` instead. #' -#' @param generation_time A call to [gt_opts()] (or its alias [generation_time_opts()]) -#' defining the -#' generation time distribution used. For backwards compatibility a list of -#' summary parameters can also be passed. +#' @param generation_time A call to [gt_opts()] (or its alias +#' [generation_time_opts()]) defining the generation time distribution used. +#' For backwards compatibility a list of summary parameters can also be passed. #' #' @param delays A call to [delay_opts()] defining delay distributions and #' options. See the documentation of [delay_opts()] and the examples below for diff --git a/man/epinow.Rd b/man/epinow.Rd index 93336e476..1545f5703 100644 --- a/man/epinow.Rd +++ b/man/epinow.Rd @@ -33,10 +33,9 @@ epinow( \item{data}{A \verb{} of confirmed cases (confirm) by date (date). \code{confirm} must be numeric and \code{date} must be in date format.} -\item{generation_time}{A call to \code{\link[=gt_opts]{gt_opts()}} or \code{\link[=generation_time_opts]{generation_time_opts()}} -defining the -generation time distribution used. For backwards compatibility a list of -summary parameters can also be passed.} +\item{generation_time}{A call to \code{\link[=gt_opts]{gt_opts()}} (or its alias +\code{\link[=generation_time_opts]{generation_time_opts()}}) defining the generation time distribution used. +For backwards compatibility a list of summary parameters can also be passed.} \item{delays}{A call to \code{\link[=delay_opts]{delay_opts()}} defining delay distributions and options. See the documentation of \code{\link[=delay_opts]{delay_opts()}} and the examples below for diff --git a/man/get_seeding_time.Rd b/man/get_seeding_time.Rd index 0874c3a2c..e240824fa 100644 --- a/man/get_seeding_time.Rd +++ b/man/get_seeding_time.Rd @@ -11,10 +11,9 @@ get_seeding_time(delays, generation_time, rt = rt_opts()) options. See the documentation of \code{\link[=delay_opts]{delay_opts()}} and the examples below for details.} -\item{generation_time}{A call to \code{\link[=gt_opts]{gt_opts()}} or \code{\link[=generation_time_opts]{generation_time_opts()}} -defining the -generation time distribution used. For backwards compatibility a list of -summary parameters can also be passed.} +\item{generation_time}{A call to \code{\link[=gt_opts]{gt_opts()}} (or its alias +\code{\link[=generation_time_opts]{generation_time_opts()}}) defining the generation time distribution used. +For backwards compatibility a list of summary parameters can also be passed.} \item{rt}{A list of options as generated by \code{\link[=rt_opts]{rt_opts()}} defining Rt estimation. Defaults to \code{\link[=rt_opts]{rt_opts()}}. Set to \code{NULL} to switch to using back diff --git a/man/regional_epinow.Rd b/man/regional_epinow.Rd index 9231160c4..5106c9a39 100644 --- a/man/regional_epinow.Rd +++ b/man/regional_epinow.Rd @@ -32,10 +32,9 @@ regional_epinow( \item{data}{A \verb{} of confirmed cases (confirm) by date (date), and region (\code{region}).} -\item{generation_time}{A call to \code{\link[=gt_opts]{gt_opts()}} or \code{\link[=generation_time_opts]{generation_time_opts()}} -defining the -generation time distribution used. For backwards compatibility a list of -summary parameters can also be passed.} +\item{generation_time}{A call to \code{\link[=gt_opts]{gt_opts()}} (or its alias +\code{\link[=generation_time_opts]{generation_time_opts()}}) defining the generation time distribution used. +For backwards compatibility a list of summary parameters can also be passed.} \item{delays}{A call to \code{\link[=delay_opts]{delay_opts()}} defining delay distributions and options. See the documentation of \code{\link[=delay_opts]{delay_opts()}} and the examples below for diff --git a/man/run_region.Rd b/man/run_region.Rd index cac7c9245..802b7b8f3 100644 --- a/man/run_region.Rd +++ b/man/run_region.Rd @@ -30,10 +30,9 @@ run_region( \arguments{ \item{target_region}{Character string indicating the region being evaluated} -\item{generation_time}{A call to \code{\link[=gt_opts]{gt_opts()}} or \code{\link[=generation_time_opts]{generation_time_opts()}} -defining the -generation time distribution used. For backwards compatibility a list of -summary parameters can also be passed.} +\item{generation_time}{A call to \code{\link[=gt_opts]{gt_opts()}} (or its alias +\code{\link[=generation_time_opts]{generation_time_opts()}}) defining the generation time distribution used. +For backwards compatibility a list of summary parameters can also be passed.} \item{delays}{A call to \code{\link[=delay_opts]{delay_opts()}} defining delay distributions and options. See the documentation of \code{\link[=delay_opts]{delay_opts()}} and the examples below for diff --git a/man/simulate_infections.Rd b/man/simulate_infections.Rd index 8bb3a1990..70bad6010 100644 --- a/man/simulate_infections.Rd +++ b/man/simulate_infections.Rd @@ -39,10 +39,9 @@ numerical vector of length specified in \code{\link[=obs_opts]{obs_opts()}} as \ gives the weight given to reporting on this day (normalised to 1). The default is \code{NULL}.} -\item{generation_time}{A call to \code{\link[=gt_opts]{gt_opts()}} or \code{\link[=generation_time_opts]{generation_time_opts()}} -defining the -generation time distribution used. For backwards compatibility a list of -summary parameters can also be passed.} +\item{generation_time}{A call to \code{\link[=gt_opts]{gt_opts()}} (or its alias +\code{\link[=generation_time_opts]{generation_time_opts()}}) defining the generation time distribution used. +For backwards compatibility a list of summary parameters can also be passed.} \item{delays}{A call to \code{\link[=delay_opts]{delay_opts()}} defining delay distributions and options. See the documentation of \code{\link[=delay_opts]{delay_opts()}} and the examples below for