Glossary

Alignment

Ancestral trait (reconstruction)

Augur

Auspice

Bases

Branch

Build

Config

Division

Filtering

Genome

Genomic epidemiology

GISAID

Location

Metadata

Narrative

Node

Phylogeny

Reference genome

Region

Sample

Sequence

Snakemake

Strain

Subsampling

Tip (leaf)

TSV

Trait

Transmission

Tree

Workflow manager