From 06ba252585c1b676e385ea5e2a71574f34904eaa Mon Sep 17 00:00:00 2001
From: Fred Atherden <43879983+fred-atherden@users.noreply.github.com>
Date: Tue, 13 Feb 2024 15:41:24 +0000
Subject: [PATCH] Remove math-mi-empty-test

---
 src/final-JATS-schematron.sch                 |    2 -
 src/final-JATS-schematron.xsl                 |   14 -
 src/final-package-JATS-schematron.sch         |    2 -
 src/pre-JATS-schematron.sch                   |    2 -
 src/pre-JATS-schematron.xsl                   |   14 -
 src/schematron.sch                            |    4 -
 .../clintrial-conformance-9.sch               | 1303 -----------------
 .../clintrial-conformance-9/fail.xml          |   29 -
 .../clintrial-conformance-9/pass.xml          |   29 -
 .../grant-doi-tests/grant-doi-test-1/fail.xml |   25 -
 .../grant-doi-test-1/grant-doi-test-1.sch     | 1300 ----------------
 .../grant-doi-tests/grant-doi-test-1/pass.xml |   25 -
 .../math-mi-tests/math-mi-empty-test/fail.xml |    9 -
 .../math-mi-empty-test/math-mi-empty-test.sch | 1303 -----------------
 .../math-mi-tests/math-mi-empty-test/pass.xml |    9 -
 test/xspec/schematron.sch                     |    3 -
 test/xspec/schematron.xspec                   |   10 -
 17 files changed, 4083 deletions(-)
 delete mode 100644 test/tests/gen/abstract-sec-titles/clintrial-conformance-9/clintrial-conformance-9.sch
 delete mode 100644 test/tests/gen/abstract-sec-titles/clintrial-conformance-9/fail.xml
 delete mode 100644 test/tests/gen/abstract-sec-titles/clintrial-conformance-9/pass.xml
 delete mode 100644 test/tests/gen/grant-doi-tests/grant-doi-test-1/fail.xml
 delete mode 100644 test/tests/gen/grant-doi-tests/grant-doi-test-1/grant-doi-test-1.sch
 delete mode 100644 test/tests/gen/grant-doi-tests/grant-doi-test-1/pass.xml
 delete mode 100644 test/tests/gen/math-mi-tests/math-mi-empty-test/fail.xml
 delete mode 100644 test/tests/gen/math-mi-tests/math-mi-empty-test/math-mi-empty-test.sch
 delete mode 100644 test/tests/gen/math-mi-tests/math-mi-empty-test/pass.xml

diff --git a/src/final-JATS-schematron.sch b/src/final-JATS-schematron.sch
index bbc295653b..80befdc6ac 100644
--- a/src/final-JATS-schematron.sch
+++ b/src/final-JATS-schematron.sch
@@ -2954,8 +2954,6 @@
     </rule></pattern><pattern id="math-mi-tests-pattern"><rule context="mml:mi" id="math-mi-tests">
       
       <report test="matches(.,'^\p{Zs}$')" role="error" id="math-mi-space-test">[math-mi-space-test] <name/> element contains only spaces. Has "\" been used for space in the tex editor, instead of "\,"?</report>
-
-      <report test="not(*) and normalize-space(.)=''" role="error" id="math-mi-empty-test">[math-mi-empty-test] <name/> element is completely empty. This is not allowed.</report>
       
     </rule></pattern><pattern id="disp-formula-child-tests-pattern"><rule context="disp-formula/*" id="disp-formula-child-tests">
       
diff --git a/src/final-JATS-schematron.xsl b/src/final-JATS-schematron.xsl
index e32bad4eec..599bf9f588 100644
--- a/src/final-JATS-schematron.xsl
+++ b/src/final-JATS-schematron.xsl
@@ -16376,20 +16376,6 @@
                <xsl:text/> element contains only spaces. Has "\" been used for space in the tex editor, instead of "\,"?</svrl:text>
          </svrl:successful-report>
       </xsl:if>
-
-		    <!--REPORT error-->
-      <xsl:if test="not(*) and normalize-space(.)=''">
-         <svrl:successful-report xmlns:svrl="http://purl.oclc.org/dsdl/svrl" test="not(*) and normalize-space(.)=''">
-            <xsl:attribute name="id">math-mi-empty-test</xsl:attribute>
-            <xsl:attribute name="role">error</xsl:attribute>
-            <xsl:attribute name="location">
-               <xsl:apply-templates select="." mode="schematron-select-full-path"/>
-            </xsl:attribute>
-            <svrl:text>[math-mi-empty-test] <xsl:text/>
-               <xsl:value-of select="name(.)"/>
-               <xsl:text/> element is completely empty. This is not allowed.</svrl:text>
-         </svrl:successful-report>
-      </xsl:if>
       <xsl:apply-templates select="*" mode="M208"/>
    </xsl:template>
    <xsl:template match="text()" priority="-1" mode="M208"/>
diff --git a/src/final-package-JATS-schematron.sch b/src/final-package-JATS-schematron.sch
index 311a9ee2bd..82b8de88cf 100644
--- a/src/final-package-JATS-schematron.sch
+++ b/src/final-package-JATS-schematron.sch
@@ -2960,8 +2960,6 @@
     </rule></pattern><pattern id="math-mi-tests-pattern"><rule context="mml:mi" id="math-mi-tests">
       
       <report test="matches(.,'^\p{Zs}$')" role="error" id="math-mi-space-test"><name/> element contains only spaces. Has "\" been used for space in the tex editor, instead of "\,"?</report>
-
-      <report test="not(*) and normalize-space(.)=''" role="error" id="math-mi-empty-test"><name/> element is completely empty. This is not allowed.</report>
       
     </rule></pattern><pattern id="disp-formula-child-tests-pattern"><rule context="disp-formula/*" id="disp-formula-child-tests">
       
diff --git a/src/pre-JATS-schematron.sch b/src/pre-JATS-schematron.sch
index 38c06c6484..357830727e 100644
--- a/src/pre-JATS-schematron.sch
+++ b/src/pre-JATS-schematron.sch
@@ -2899,8 +2899,6 @@
     </rule></pattern><pattern id="math-mi-tests-pattern"><rule context="mml:mi" id="math-mi-tests">
       
       <report test="matches(.,'^\p{Zs}$')" role="error" id="math-mi-space-test">[math-mi-space-test] <name/> element contains only spaces. Has "\" been used for space in the tex editor, instead of "\,"?</report>
-
-      <report test="not(*) and normalize-space(.)=''" role="error" id="math-mi-empty-test">[math-mi-empty-test] <name/> element is completely empty. This is not allowed.</report>
       
     </rule></pattern><pattern id="disp-formula-child-tests-pattern"><rule context="disp-formula/*" id="disp-formula-child-tests">
       
diff --git a/src/pre-JATS-schematron.xsl b/src/pre-JATS-schematron.xsl
index 833042ed77..3d136bb1eb 100644
--- a/src/pre-JATS-schematron.xsl
+++ b/src/pre-JATS-schematron.xsl
@@ -16242,20 +16242,6 @@
                <xsl:text/> element contains only spaces. Has "\" been used for space in the tex editor, instead of "\,"?</svrl:text>
          </svrl:successful-report>
       </xsl:if>
-
-		    <!--REPORT error-->
-      <xsl:if test="not(*) and normalize-space(.)=''">
-         <svrl:successful-report xmlns:svrl="http://purl.oclc.org/dsdl/svrl" test="not(*) and normalize-space(.)=''">
-            <xsl:attribute name="id">math-mi-empty-test</xsl:attribute>
-            <xsl:attribute name="role">error</xsl:attribute>
-            <xsl:attribute name="location">
-               <xsl:apply-templates select="." mode="schematron-select-full-path"/>
-            </xsl:attribute>
-            <svrl:text>[math-mi-empty-test] <xsl:text/>
-               <xsl:value-of select="name(.)"/>
-               <xsl:text/> element is completely empty. This is not allowed.</svrl:text>
-         </svrl:successful-report>
-      </xsl:if>
       <xsl:apply-templates select="*" mode="M206"/>
    </xsl:template>
    <xsl:template match="text()" priority="-1" mode="M206"/>
diff --git a/src/schematron.sch b/src/schematron.sch
index ff7e28cf42..2781b322c1 100644
--- a/src/schematron.sch
+++ b/src/schematron.sch
@@ -4764,10 +4764,6 @@ else self::*/local-name() = $allowed-p-blocks"
       <report test="matches(.,'^\p{Zs}$')"
         role="error"
         id="math-mi-space-test"><name/> element contains only spaces. Has "\" been used for space in the tex editor, instead of "\,"?</report>
-
-      <report test="not(*) and normalize-space(.)=''"
-        role="error"
-        id="math-mi-empty-test"><name/> element is completely empty. This is not allowed.</report>
       
     </rule>
     
diff --git a/test/tests/gen/abstract-sec-titles/clintrial-conformance-9/clintrial-conformance-9.sch b/test/tests/gen/abstract-sec-titles/clintrial-conformance-9/clintrial-conformance-9.sch
deleted file mode 100644
index 6077c47ae5..0000000000
--- a/test/tests/gen/abstract-sec-titles/clintrial-conformance-9/clintrial-conformance-9.sch
+++ /dev/null
@@ -1,1303 +0,0 @@
-<schema xmlns="http://purl.oclc.org/dsdl/schematron" xmlns:xlink="http://www.w3.org/1999/xlink" xmlns:xsl="http://www.w3.org/1999/XSL/Transform" xmlns:java="http://www.java.com/" xmlns:file="java.io.File" xmlns:ali="http://www.niso.org/schemas/ali/1.0/" xmlns:mml="http://www.w3.org/1998/Math/MathML" queryBinding="xslt2">
-  <title>eLife Schematron</title>
-  <ns uri="http://www.niso.org/schemas/ali/1.0/" prefix="ali"/>
-  <ns uri="http://www.w3.org/XML/1998/namespace" prefix="xml"/>
-  <ns uri="http://www.w3.org/1999/xlink" prefix="xlink"/>
-  <ns uri="http://www.w3.org/2001/XInclude" prefix="xi"/>
-  <ns uri="http://www.w3.org/1998/Math/MathML" prefix="mml"/>
-  <ns uri="http://saxon.sf.net/" prefix="saxon"/>
-  <ns uri="http://purl.org/dc/terms/" prefix="dc"/>
-  <ns uri="http://www.w3.org/2001/XMLSchema" prefix="xs"/>
-  <ns uri="https://elifesciences.org/namespace" prefix="e"/>
-  <ns uri="java.io.File" prefix="file"/>
-  <ns uri="http://www.java.com/" prefix="java"/>
-  <let name="features-subj" value="('Feature Article', 'Insight', 'Editorial')"/>
-  <let name="features-article-types" value="('article-commentary','editorial','discussion')"/>
-  <let name="research-subj" value="('Research Article', 'Short Report', 'Tools and Resources', 'Research Advance', 'Registered Report', 'Replication Study', 'Research Communication', 'Correction', 'Retraction', 'Scientific Correspondence', 'Review Article')"/>
-  <let name="notice-article-types" value="('correction','retraction','expression-of-concern')"/>
-  <let name="notice-display-types" value="('Correction','Retraction','Expression of Concern')"/>
-  <let name="allowed-article-types" value="('research-article','review-article',$features-article-types, $notice-article-types)"/>
-  <let name="allowed-disp-subj" value="($research-subj, $features-subj)"/>
-  <let name="MSAs" value="('Biochemistry and Chemical Biology', 'Cancer Biology', 'Cell Biology', 'Chromosomes and Gene Expression', 'Computational and Systems Biology', 'Developmental Biology', 'Ecology', 'Epidemiology and Global Health', 'Evolutionary Biology', 'Genetics and Genomics', 'Medicine', 'Immunology and Inflammation', 'Microbiology and Infectious Disease', 'Neuroscience', 'Physics of Living Systems', 'Plant Biology', 'Stem Cells and Regenerative Medicine', 'Structural Biology and Molecular Biophysics')"/>
-  <let name="funders" value="'../../../../../src/funders.xml'"/>
-  <let name="wellcome-fundref-ids" value="('http://dx.doi.org/10.13039/100010269','http://dx.doi.org/10.13039/100004440')"/>
-  <xsl:function name="e:is-prc" as="xs:boolean">
-    <xsl:param name="elem" as="node()"/>
-    <xsl:choose>
-      <xsl:when test="$elem/name()='article'">
-        <xsl:value-of select="e:is-prc-helper($elem)"/>
-      </xsl:when>
-      <xsl:otherwise>
-        <xsl:value-of select="e:is-prc-helper($elem/ancestor::article[1])"/>
-      </xsl:otherwise>
-    </xsl:choose>
-  </xsl:function>
-  <xsl:function name="e:is-prc-helper" as="xs:boolean">
-    <xsl:param name="article" as="node()"/>
-    <xsl:choose>
-      <xsl:when test="$article//article-meta/custom-meta-group/custom-meta[meta-name='publishing-route']/meta-value='prc'">
-        <xsl:value-of select="true()"/>
-      </xsl:when>
-      <xsl:otherwise>
-        <xsl:value-of select="false()"/>
-      </xsl:otherwise>
-    </xsl:choose>
-  </xsl:function>
-  <xsl:function name="e:get-version" as="xs:string">
-    <xsl:param name="elem" as="node()"/>
-    <xsl:choose>
-      <xsl:when test="$elem/name()='article'">
-        <xsl:value-of select="e:get-version-helper($elem)"/>
-      </xsl:when>
-      <xsl:otherwise>
-        <xsl:value-of select="e:get-version-helper($elem/ancestor::article[1])"/>
-      </xsl:otherwise>
-    </xsl:choose>
-  </xsl:function>
-  <xsl:function name="e:get-version-helper" as="xs:string">
-    <xsl:param name="article" as="node()"/>
-    <xsl:choose>
-      <xsl:when test="$article//article-meta/custom-meta-group/custom-meta[meta-name='schema-version']/meta-value">
-        <xsl:value-of select="$article//article-meta/custom-meta-group/custom-meta[meta-name='schema-version']/meta-value"/>
-      </xsl:when>
-      <xsl:otherwise>
-        <xsl:value-of select="'1'"/>
-      </xsl:otherwise>
-    </xsl:choose>
-  </xsl:function>
-  <xsl:function name="e:titleCaseToken" as="xs:string">
-    <xsl:param name="s" as="xs:string"/>
-    <xsl:choose>
-      <xsl:when test="contains($s,'-')">
-        <xsl:value-of select="concat(           upper-case(substring(substring-before($s,'-'), 1, 1)),           lower-case(substring(substring-before($s,'-'),2)),           '-',           upper-case(substring(substring-after($s,'-'), 1, 1)),           lower-case(substring(substring-after($s,'-'),2)))"/>
-      </xsl:when>
-      <xsl:when test="lower-case($s)='elife'">
-        <xsl:value-of select="'eLife'"/>
-      </xsl:when>
-      <xsl:when test="lower-case($s)=('and','or','the','an','of','in','as','at','by','for','a','to','up','but','yet')">
-        <xsl:value-of select="lower-case($s)"/>
-      </xsl:when>
-      <xsl:when test="matches(lower-case($s),'^rna$|^dna$|^mri$|^hiv$|^tor$|^aids$|^covid-19$|^covid$')">
-        <xsl:value-of select="upper-case($s)"/>
-      </xsl:when>
-      <xsl:when test="matches(lower-case($s),'[1-4]d')">
-        <xsl:value-of select="upper-case($s)"/>
-      </xsl:when>
-      <xsl:otherwise>
-        <xsl:value-of select="concat(upper-case(substring($s, 1, 1)), lower-case(substring($s, 2)))"/>
-      </xsl:otherwise>
-    </xsl:choose>
-  </xsl:function>
-  <xsl:function name="e:titleCase" as="xs:string">
-    <xsl:param name="s" as="xs:string"/>
-    <xsl:choose>
-      
-      <xsl:when test="lower-case($s)='protein kinase a'">
-        <xsl:value-of select="'Protein Kinase A'"/>
-      </xsl:when>
-      <xsl:when test="contains($s,' ')">
-        <xsl:variable name="token1" select="substring-before($s,' ')"/>
-        <xsl:variable name="token2" select="substring-after($s,$token1)"/>
-        <xsl:choose>
-          <xsl:when test="lower-case($token1)='elife'">
-            <xsl:value-of select="concat('eLife',               ' ',               string-join(for $x in tokenize(substring-after($token2,' '),'\p{Zs}') return e:titleCaseToken($x),' ')               )"/>
-          </xsl:when>
-          <xsl:when test="matches(lower-case($token1),'^rna$|^dna$|^mri$|^hiv$|^tor$|^aids$|^covid-19$|^covid$')">
-            <xsl:value-of select="concat(upper-case($token1),               ' ',               string-join(for $x in tokenize(substring-after($token2,' '),'\p{Zs}') return e:titleCaseToken($x),' ')               )"/>
-          </xsl:when>
-          <xsl:when test="matches(lower-case($token1),'[1-4]d')">
-            <xsl:value-of select="concat(upper-case($token1),               ' ',               string-join(for $x in tokenize(substring-after($token2,' '),'\p{Zs}') return e:titleCaseToken($x),' ')               )"/>
-          </xsl:when>
-          <xsl:when test="contains($token1,'-')">
-            <xsl:value-of select="string-join(for $x in tokenize($s,'\p{Zs}') return e:titleCaseToken($x),' ')"/>
-          </xsl:when>
-          <xsl:otherwise>
-            <xsl:value-of select="concat(               concat(upper-case(substring($token1, 1, 1)), lower-case(substring($token1, 2))),               ' ',               string-join(for $x in tokenize(substring-after($token2,' '),'\p{Zs}') return e:titleCaseToken($x),' ')               )"/>
-          </xsl:otherwise>
-        </xsl:choose>
-      </xsl:when>
-      <xsl:when test="lower-case($s)='elife'">
-        <xsl:value-of select="'eLife'"/>
-      </xsl:when>
-      <xsl:when test="lower-case($s)=('and','or','the','an','of')">
-        <xsl:value-of select="lower-case($s)"/>
-      </xsl:when>
-      <xsl:when test="matches(lower-case($s),'^rna$|^dna$|^mri$|^hiv$|^tor$|^aids$|^covid-19$|^covid$')">
-        <xsl:value-of select="upper-case($s)"/>
-      </xsl:when>
-      <xsl:when test="matches(lower-case($s),'[1-4]d')">
-        <xsl:value-of select="upper-case($s)"/>
-      </xsl:when>
-      <xsl:otherwise>
-        <xsl:value-of select="e:titleCaseToken($s)"/>
-      </xsl:otherwise>
-    </xsl:choose>
-  </xsl:function>
-  <xsl:function name="e:article-type2title" as="xs:string">
-    <xsl:param name="s" as="xs:string"/>
-    <xsl:choose>
-      <xsl:when test="$s = 'Replication Study'">
-        <xsl:value-of select="'Replication Study:'"/>
-      </xsl:when>
-      <xsl:when test="$s = 'Registered Report'">
-        <xsl:value-of select="'Registered report:'"/>
-      </xsl:when>
-      <xsl:when test="$s = 'Correction'">
-        <xsl:value-of select="'Correction:'"/>
-      </xsl:when>
-      <xsl:when test="$s = 'Retraction'">
-        <xsl:value-of select="'Retraction:'"/>
-      </xsl:when>
-      <xsl:when test="$s = 'Expression of Concern'">
-        <xsl:value-of select="'Expression of Concern:'"/>
-      </xsl:when>
-      <xsl:otherwise>
-        <xsl:value-of select="'undefined'"/>
-      </xsl:otherwise>
-    </xsl:choose>
-  </xsl:function>
-  <xsl:function name="e:sec-type2title" as="xs:string">
-    <xsl:param name="s" as="xs:string"/>
-    <xsl:choose>
-      <xsl:when test="$s = 'intro'">
-        <xsl:value-of select="'Introduction'"/>
-      </xsl:when>
-      <xsl:when test="$s = 'results'">
-        <xsl:value-of select="'Results'"/>
-      </xsl:when>
-      <xsl:when test="$s = 'discussion'">
-        <xsl:value-of select="'Discussion'"/>
-      </xsl:when>
-      <xsl:when test="$s = 'materials|methods'">
-        <xsl:value-of select="'Materials and methods'"/>
-      </xsl:when>
-      <xsl:when test="$s = 'results|discussion'">
-        <xsl:value-of select="'Results and discussion'"/>
-      </xsl:when>
-      <xsl:when test="$s = 'methods'">
-        <xsl:value-of select="'Methods'"/>
-      </xsl:when>
-      <xsl:when test="$s = 'model'">
-        <xsl:value-of select="'Model'"/>
-      </xsl:when>
-      <xsl:when test="$s = 'additional-information'">
-        <xsl:value-of select="'Additional information'"/>
-      </xsl:when>
-      <xsl:when test="$s = 'supplementary-material'">
-        <xsl:value-of select="'Additional files'"/>
-      </xsl:when>
-      <xsl:when test="$s = 'data-availability'">
-        <xsl:value-of select="'Data availability'"/>
-      </xsl:when>
-      <xsl:otherwise>
-        <xsl:value-of select="'undefined'"/>
-      </xsl:otherwise>
-    </xsl:choose>
-  </xsl:function>
-  <xsl:function name="e:fig-id-type" as="xs:string">
-    <xsl:param name="s" as="xs:string"/>
-    <xsl:choose>
-      <xsl:when test="matches($s,'^fig[0-9]{1,3}$')">
-        <xsl:value-of select="'Figure'"/>
-      </xsl:when>
-      <xsl:when test="matches($s,'^fig[0-9]{1,3}s[0-9]{1,3}$')">
-        <xsl:value-of select="'Figure supplement'"/>
-      </xsl:when>
-      <xsl:when test="matches($s,'^box[0-9]{1,3}fig[0-9]{1,3}$')">
-        <xsl:value-of select="'Box figure'"/>
-      </xsl:when>
-      <xsl:when test="matches($s,'^app[0-9]{1,3}fig[0-9]{1,3}$')">
-        <xsl:value-of select="'Appendix figure'"/>
-      </xsl:when>
-      <xsl:when test="matches($s,'^app[0-9]{1,3}fig[0-9]{1,3}s[0-9]{1,3}$')">
-        <xsl:value-of select="'Appendix figure supplement'"/>
-      </xsl:when>
-      <xsl:when test="matches($s,'^respfig[0-9]{1,3}$|^sa[0-9]fig[0-9]{1,3}$')">
-        <xsl:value-of select="'Author response figure'"/>
-      </xsl:when>
-      <xsl:when test="matches($s,'^C[0-9]{1,3}$|^chem[0-9]{1,3}$')">
-        <xsl:value-of select="'Chemical structure'"/>
-      </xsl:when>
-      <xsl:when test="matches($s,'^app[0-9]{1,3}C[0-9]{1,3}$|^app[0-9]{1,3}chem[0-9]{1,3}$')">
-        <xsl:value-of select="'Appendix chemical structure'"/>
-      </xsl:when>
-      <xsl:when test="matches($s,'^S[0-9]{1,3}$|^scheme[0-9]{1,3}$')">
-        <xsl:value-of select="'Scheme'"/>
-      </xsl:when>
-      <xsl:when test="matches($s,'^app[0-9]{1,3}S[0-9]{1,3}$|^app[0-9]{1,3}scheme[0-9]{1,3}$')">
-        <xsl:value-of select="'Appendix scheme'"/>
-      </xsl:when>
-      <xsl:otherwise>
-        <xsl:value-of select="'undefined'"/>
-      </xsl:otherwise>
-    </xsl:choose>
-  </xsl:function>
-  <xsl:function name="e:stripDiacritics" as="xs:string">
-    <xsl:param name="string" as="xs:string"/>
-    <xsl:value-of select="replace(replace(replace(translate(normalize-unicode($string,'NFD'),'ƀȼđɇǥħɨıɉꝁłøɍŧɏƶ','bcdeghiijklortyz'),'[\p{M}’]',''),'æ','ae'),'ß','ss')"/>
-  </xsl:function>
-  <xsl:function name="e:ref-list-string" as="xs:string">
-    <xsl:param name="ref"/>
-    <xsl:choose>
-      <xsl:when test="$ref/element-citation[1]/person-group[1]/* and $ref/element-citation[1]/year">
-        <xsl:value-of select="concat(           replace(e:get-collab-or-surname($ref/element-citation[1]/person-group[1]/*[1]),'\p{Zs}',''),           ' ',           $ref/element-citation[1]/year[1],           ' ',           string-join(for $x in $ref/element-citation[1]/person-group[1]/*[position()=(2,3)]           return replace(e:get-collab-or-surname($x),'\p{Zs}',''),' ')           )"/>
-      </xsl:when>
-      <xsl:when test="$ref/element-citation/person-group[1]/*">
-        <xsl:value-of select="concat(           replace(e:get-collab-or-surname($ref/element-citation[1]/person-group[1]/*[1]),'\p{Zs}',''),           ' 9999 ',           string-join(for $x in $ref/element-citation[1]/person-group[1]/*[position()=(2,3)]           return replace(e:get-collab-or-surname($x),'\p{Zs}',''),' ')           )"/>
-      </xsl:when>
-      <xsl:when test="$ref/element-citation/year">
-        <xsl:value-of select="concat(' ',$ref/element-citation[1]/year[1])"/>
-      </xsl:when>
-      <xsl:otherwise>
-        <xsl:value-of select="'zzzzz 9999'"/>
-      </xsl:otherwise>
-    </xsl:choose>
-  </xsl:function>
-  <xsl:function name="e:ref-list-string2" as="xs:string">
-    <xsl:param name="ref"/>
-    <xsl:choose>
-      <xsl:when test="$ref/element-citation[1]/year and count($ref/element-citation[1]/person-group[1]/*) = 2">
-        <xsl:value-of select="concat(           e:get-collab-or-surname($ref/element-citation[1]/person-group[1]/*[1]),           ' ',           e:get-collab-or-surname($ref/element-citation[1]/person-group[1]/*[2]),           ' ',           $ref/element-citation[1]/year[1])"/>
-      </xsl:when>
-      <xsl:when test="$ref/element-citation/person-group[1]/* and $ref/element-citation[1]/year">
-        <xsl:value-of select="concat(           e:get-collab-or-surname($ref/element-citation[1]/person-group[1]/*[1]),           ' ',           $ref/element-citation[1]/year[1])"/>
-      </xsl:when>
-      <xsl:when test="$ref/element-citation/person-group[1]/*">
-        <xsl:value-of select="concat(           e:get-collab-or-surname($ref/element-citation[1]/person-group[1]/*[1]),           ' 9999 ')"/>
-      </xsl:when>
-      <xsl:when test="$ref/element-citation/year">
-        <xsl:value-of select="concat(' ',$ref/element-citation[1]/year[1])"/>
-      </xsl:when>
-      <xsl:otherwise>
-        <xsl:value-of select="'zzzzz 9999'"/>
-      </xsl:otherwise>
-    </xsl:choose>
-  </xsl:function>
-  <xsl:function name="e:get-collab-or-surname" as="xs:string?">
-    <xsl:param name="collab-or-name"/>
-    <xsl:choose>
-      <xsl:when test="$collab-or-name/name()='collab'">
-        <xsl:value-of select="e:stripDiacritics(replace(lower-case($collab-or-name),'\.',''))"/>
-      </xsl:when>
-      <xsl:when test="$collab-or-name/surname">
-        <xsl:value-of select="e:stripDiacritics(lower-case($collab-or-name/surname[1]))"/>
-      </xsl:when>
-      <xsl:otherwise/>
-    </xsl:choose>
-  </xsl:function>
-  <xsl:function name="e:cite-name-text" as="xs:string">
-    <xsl:param name="person-group"/>
-    <xsl:choose>
-      <xsl:when test="(count($person-group/*) = 1) and $person-group/name">
-        <xsl:value-of select="$person-group/name/surname[1]"/>
-      </xsl:when>
-      <xsl:when test="(count($person-group/*) = 1) and $person-group/collab">
-        <xsl:value-of select="$person-group/collab"/>
-      </xsl:when>
-      <xsl:when test="(count($person-group/*) = 2) and (count($person-group/name) = 1) and $person-group/*[1]/local-name() = 'collab'">
-        <xsl:value-of select="concat($person-group/collab,' and ',$person-group/name/surname[1])"/>
-      </xsl:when>
-      <xsl:when test="(count($person-group/*) = 2) and (count($person-group/name) = 1) and $person-group/*[1]/local-name() = 'name'">
-        <xsl:value-of select="concat($person-group/name/surname[1],' and ',$person-group/collab)"/>
-      </xsl:when>
-      <xsl:when test="(count($person-group/*) = 2) and (count($person-group/name) = 2)">
-        <xsl:value-of select="concat($person-group/name[1]/surname[1],' and ',$person-group/name[2]/surname[1])"/>
-      </xsl:when>
-      <xsl:when test="(count($person-group/*) = 2) and (count($person-group/collab) = 2)">
-        <xsl:value-of select="concat($person-group/collab[1],' and ',$person-group/collab[2])"/>
-      </xsl:when>
-      <xsl:when test="(count($person-group/*) ge 2) and $person-group/*[1]/local-name() = 'collab'">
-        <xsl:value-of select="concat($person-group/collab[1], ' et al.')"/>
-      </xsl:when>
-      <xsl:when test="(count($person-group/*) ge 2) and $person-group/*[1]/local-name() = 'name'">
-        <xsl:value-of select="concat($person-group/name[1]/surname[1], ' et al.')"/>
-      </xsl:when>
-      <xsl:otherwise>
-        <xsl:value-of select="'undetermined'"/>
-      </xsl:otherwise>
-    </xsl:choose>
-  </xsl:function>
-  <xsl:function name="e:citation-format1" as="xs:string">
-    <xsl:param name="element-citation"/>
-    <xsl:choose>
-      <xsl:when test="$element-citation/person-group and $element-citation//year">
-        <xsl:value-of select="concat(e:cite-name-text($element-citation/person-group[1]),', ',$element-citation/descendant::year[1])"/>
-      </xsl:when>
-      <xsl:when test="$element-citation/person-group and not($element-citation//year)">
-        <xsl:value-of select="concat(e:cite-name-text($element-citation/person-group[1]),', ')"/>
-      </xsl:when>
-      <xsl:when test="not($element-citation/person-group) and $element-citation//year">
-        <xsl:value-of select="concat('et al., ',$element-citation/descendant::year[1])"/>
-      </xsl:when>
-      <xsl:otherwise>
-        <xsl:value-of select="', '"/>
-      </xsl:otherwise>
-    </xsl:choose>
-  </xsl:function>
-  <xsl:function name="e:citation-format2" as="xs:string">
-    <xsl:param name="element-citation"/>
-    <xsl:choose>
-      <xsl:when test="$element-citation/person-group and $element-citation//year">
-        <xsl:value-of select="concat(e:cite-name-text($element-citation/person-group[1]),' (',$element-citation/descendant::year[1],')')"/>
-      </xsl:when>
-      <xsl:when test="$element-citation/person-group and not($element-citation//year)">
-        <xsl:value-of select="concat(e:cite-name-text($element-citation/person-group[1]),' ()')"/>
-      </xsl:when>
-      <xsl:when test="not($element-citation/person-group) and $element-citation//year">
-        <xsl:value-of select="concat('et al. (',$element-citation/descendant::year[1],')')"/>
-      </xsl:when>
-      <xsl:otherwise>
-        <xsl:value-of select="', '"/>
-      </xsl:otherwise>
-    </xsl:choose>
-  </xsl:function>
-  <xsl:function name="e:ref-cite-list">
-    <xsl:param name="ref-list" as="node()"/>
-    <xsl:element name="list">
-      <xsl:for-each select="$ref-list/ref[element-citation[year]]">
-        <xsl:variable name="cite" select="e:citation-format1(./element-citation[1])"/>
-        <xsl:element name="item">
-          <xsl:attribute name="id">
-            <xsl:value-of select="./@id"/>
-          </xsl:attribute>
-          <xsl:attribute name="no-suffix">
-            <xsl:value-of select="replace($cite,'[A-Za-z]$','')"/>
-          </xsl:attribute>
-          <xsl:value-of select="$cite"/>
-        </xsl:element>
-      </xsl:for-each>
-    </xsl:element>
-  </xsl:function>
-  <xsl:function name="e:non-distinct-citations">
-    <xsl:param name="cite-list" as="node()"/>
-    <xsl:element name="list">
-    <xsl:for-each select="$cite-list//*:item">
-      <xsl:variable name="cite" select="./string()"/>
-      <xsl:choose>
-        <xsl:when test="./preceding::*:item/string() = $cite">
-          <xsl:element name="item">
-            <xsl:attribute name="id">
-              <xsl:value-of select="./@id"/>
-            </xsl:attribute>
-            <xsl:value-of select="$cite"/>
-          </xsl:element>
-        </xsl:when>
-        <xsl:when test="not(matches($cite,'[A-Za-z]$')) and (./preceding::*:item/@no-suffix/string() = $cite)">
-          <xsl:element name="item">
-            <xsl:attribute name="id">
-              <xsl:value-of select="./@id"/>
-            </xsl:attribute>
-          <xsl:value-of select="$cite"/>
-          </xsl:element>
-        </xsl:when>
-        <xsl:when test="not(matches($cite,'[A-Za-z]$')) and ./following::*:item/@no-suffix/string() = $cite">
-          <xsl:element name="item">
-            <xsl:attribute name="id">
-              <xsl:value-of select="./@id"/>
-            </xsl:attribute>
-          <xsl:value-of select="$cite"/>
-          </xsl:element>
-        </xsl:when>
-        <xsl:otherwise/>
-      </xsl:choose>
-    </xsl:for-each>
-    </xsl:element>
-  </xsl:function>
-  <xsl:function name="e:get-name" as="xs:string">
-    <xsl:param name="name"/>
-    <xsl:choose>
-      <xsl:when test="$name/given-names[1] and $name/surname[1] and $name/suffix[1]">
-        <xsl:value-of select="concat($name/given-names[1],' ',$name/surname[1],' ',$name/suffix[1])"/>
-      </xsl:when>
-      <xsl:when test="not($name/given-names[1]) and $name/surname[1] and $name/suffix[1]">
-        <xsl:value-of select="concat($name/surname[1],' ',$name/suffix[1])"/>
-      </xsl:when>
-      <xsl:when test="$name/given-names[1] and $name/surname[1] and not($name/suffix[1])">
-        <xsl:value-of select="concat($name/given-names[1],' ',$name/surname[1])"/>
-      </xsl:when>
-      <xsl:when test="not($name/given-names[1]) and $name/surname[1] and not($name/suffix[1])">
-        <xsl:value-of select="$name/surname[1]"/>
-      </xsl:when>
-      <xsl:otherwise>
-        
-        <xsl:value-of select="'No elements present'"/>
-      </xsl:otherwise>
-    </xsl:choose>
-  </xsl:function>
-  <xsl:function name="e:get-collab">
-    <xsl:param name="collab"/>
-    <xsl:for-each select="$collab/(*|text())">
-      <xsl:choose>
-        <xsl:when test="./name()='contrib-group'"/>
-        <xsl:otherwise>
-          <xsl:value-of select="."/>
-        </xsl:otherwise>
-      </xsl:choose>
-    </xsl:for-each>
-  </xsl:function>
-  <xsl:function name="e:isbn-sum" as="xs:integer">
-    <xsl:param name="s" as="xs:string"/>
-    <xsl:choose>
-      <xsl:when test="string-length($s) = 10">
-        <xsl:variable name="d1" select="number(substring($s,1,1)) * 10"/>
-        <xsl:variable name="d2" select="number(substring($s,2,1)) * 9"/>
-        <xsl:variable name="d3" select="number(substring($s,3,1)) * 8"/>
-        <xsl:variable name="d4" select="number(substring($s,4,1)) * 7"/>
-        <xsl:variable name="d5" select="number(substring($s,5,1)) * 6"/>
-        <xsl:variable name="d6" select="number(substring($s,6,1)) * 5"/>
-        <xsl:variable name="d7" select="number(substring($s,7,1)) * 4"/>
-        <xsl:variable name="d8" select="number(substring($s,8,1)) * 3"/>
-        <xsl:variable name="d9" select="number(substring($s,9,1)) * 2"/>
-        <xsl:variable name="d10" select="number(substring($s,10,1)) * 1"/>
-        <xsl:value-of select="number($d1 + $d2 + $d3 + $d4 + $d5 + $d6 + $d7 + $d8 + $d9 + $d10) mod 11"/>
-      </xsl:when>
-      <xsl:when test="string-length($s) = 13">
-        <xsl:variable name="d1" select="number(substring($s,1,1))"/>
-        <xsl:variable name="d2" select="number(substring($s,2,1)) * 3"/>
-        <xsl:variable name="d3" select="number(substring($s,3,1))"/>
-        <xsl:variable name="d4" select="number(substring($s,4,1)) * 3"/>
-        <xsl:variable name="d5" select="number(substring($s,5,1))"/>
-        <xsl:variable name="d6" select="number(substring($s,6,1)) * 3"/>
-        <xsl:variable name="d7" select="number(substring($s,7,1))"/>
-        <xsl:variable name="d8" select="number(substring($s,8,1)) * 3"/>
-        <xsl:variable name="d9" select="number(substring($s,9,1))"/>
-        <xsl:variable name="d10" select="number(substring($s,10,1)) * 3"/>
-        <xsl:variable name="d11" select="number(substring($s,11,1))"/>
-        <xsl:variable name="d12" select="number(substring($s,12,1)) * 3"/>
-        <xsl:variable name="d13" select="number(substring($s,13,1))"/>
-        <xsl:value-of select="number($d1 + $d2 + $d3 + $d4 + $d5 + $d6 + $d7 + $d8 + $d9 + $d10 + $d11 + $d12 + $d13) mod 10"/>
-      </xsl:when>
-      <xsl:otherwise>
-        <xsl:value-of select="number('1')"/>
-      </xsl:otherwise>
-    </xsl:choose>
-  </xsl:function>
-  <xsl:function name="e:escape-for-regex" as="xs:string">
-    <xsl:param name="arg" as="xs:string?"/>
-    <xsl:sequence select="replace($arg,'(\.|\[|\]|\\|\||\-|\^|\$|\?|\*|\+|\{|\}|\(|\))','\\$1')"/>
-  </xsl:function>
-  <xsl:function name="e:get-ordinal" as="xs:string">
-    <xsl:param name="value" as="xs:integer?"/>
-    <xsl:if test="translate(string($value), '0123456789', '') = '' and number($value) &gt; 0">
-      <xsl:variable name="mod100" select="$value mod 100"/>
-      <xsl:variable name="mod10" select="$value mod 10"/>
-      <xsl:choose>
-        <xsl:when test="$mod100 = 11 or $mod100 = 12 or $mod100 = 13">
-          <xsl:value-of select="concat($value,'th')"/>
-        </xsl:when>
-        <xsl:when test="$mod10 = 1">
-          <xsl:value-of select="concat($value,'st')"/>
-        </xsl:when>
-        <xsl:when test="$mod10 = 2">
-          <xsl:value-of select="concat($value,'nd')"/>
-        </xsl:when>
-        <xsl:when test="$mod10 = 3">
-          <xsl:value-of select="concat($value,'rd')"/>
-        </xsl:when>
-        <xsl:otherwise>
-          <xsl:value-of select="concat($value,'th')"/>
-        </xsl:otherwise>
-      </xsl:choose>
-    </xsl:if>
-  </xsl:function>
-  <let name="org-regex" value="'b\.\p{Zs}?subtilis|bacillus\p{Zs}?subtilis|d\.\p{Zs}?melanogaster|drosophila\p{Zs}?melanogaster|e\.\p{Zs}?coli|escherichia\p{Zs}?coli|s\.\p{Zs}?pombe|schizosaccharomyces\p{Zs}?pombe|s\.\p{Zs}?cerevisiae|saccharomyces\p{Zs}?cerevisiae|c\.\p{Zs}?elegans|caenorhabditis\p{Zs}?elegans|a\.\p{Zs}?thaliana|arabidopsis\p{Zs}?thaliana|m\.\p{Zs}?thermophila|myceliophthora\p{Zs}?thermophila|dictyostelium|p\.\p{Zs}?falciparum|plasmodium\p{Zs}?falciparum|s\.\p{Zs}?enterica|salmonella\p{Zs}?enterica|s\.\p{Zs}?pyogenes|streptococcus\p{Zs}?pyogenes|p\.\p{Zs}?dumerilii|platynereis\p{Zs}?dumerilii|p\.\p{Zs}?cynocephalus|papio\p{Zs}?cynocephalus|o\.\p{Zs}?fasciatus|oncopeltus\p{Zs}?fasciatus|n\.\p{Zs}?crassa|neurospora\p{Zs}?crassa|c\.\p{Zs}?intestinalis|ciona\p{Zs}?intestinalis|e\.\p{Zs}?cuniculi|encephalitozoon\p{Zs}?cuniculi|h\.\p{Zs}?salinarum|halobacterium\p{Zs}?salinarum|s\.\p{Zs}?solfataricus|sulfolobus\p{Zs}?solfataricus|s\.\p{Zs}?mediterranea|schmidtea\p{Zs}?mediterranea|s\.\p{Zs}?rosetta|salpingoeca\p{Zs}?rosetta|n\.\p{Zs}?vectensis|nematostella\p{Zs}?vectensis|s\.\p{Zs}?aureus|staphylococcus\p{Zs}?aureus|v\.\p{Zs}?cholerae|vibrio\p{Zs}?cholerae|t\.\p{Zs}?thermophila|tetrahymena\p{Zs}?thermophila|c\.\p{Zs}?reinhardtii|chlamydomonas\p{Zs}?reinhardtii|n\.\p{Zs}?attenuata|nicotiana\p{Zs}?attenuata|e\.\p{Zs}?carotovora|erwinia\p{Zs}?carotovora|e\.\p{Zs}?faecalis|h\.\p{Zs}?sapiens|homo\p{Zs}?sapiens|c\.\p{Zs}?trachomatis|chlamydia\p{Zs}?trachomatis|enterococcus\p{Zs}?faecalis|x\.\p{Zs}?laevis|xenopus\p{Zs}?laevis|x\.\p{Zs}?tropicalis|xenopus\p{Zs}?tropicalis|m\.\p{Zs}?musculus|mus\p{Zs}?musculus|d\.\p{Zs}?immigrans|drosophila\p{Zs}?immigrans|d\.\p{Zs}?subobscura|drosophila\p{Zs}?subobscura|d\.\p{Zs}?affinis|drosophila\p{Zs}?affinis|d\.\p{Zs}?obscura|drosophila\p{Zs}?obscura|f\.\p{Zs}?tularensis|francisella\p{Zs}?tularensis|p\.\p{Zs}?plantaginis|podosphaera\p{Zs}?plantaginis|p\.\p{Zs}?lanceolata|plantago\p{Zs}?lanceolata|m\.\p{Zs}?trossulus|mytilus\p{Zs}?trossulus|m\.\p{Zs}?edulis|mytilus\p{Zs}?edulis|m\.\p{Zs}?chilensis|mytilus\p{Zs}?chilensis|u\.\p{Zs}?maydis|ustilago\p{Zs}?maydis|p\.\p{Zs}?knowlesi|plasmodium\p{Zs}?knowlesi|p\.\p{Zs}?aeruginosa|pseudomonas\p{Zs}?aeruginosa|t\.\p{Zs}?brucei|trypanosoma\p{Zs}?brucei|t\.\p{Zs}?gondii|toxoplasma\p{Zs}?gondii|d\.\p{Zs}?rerio|danio\p{Zs}?rerio|yimenosaurus|lesothosaurus\p{Zs}?diagnosticus|l\.\p{Zs}?diagnosticus|scelidosaurus\p{Zs}?harrisonii|s\.\p{Zs}?harrisonii|haya\p{Zs}?griva|h\.\p{Zs}?griva|polacanthus\p{Zs}?foxii|p\.\p{Zs}?foxii|scutellosaurus\p{Zs}?lawleri|s\.\p{Zs}?lawleri|saichania\p{Zs}?chulsanensis|s\.\p{Zs}?chulsanensis|gargoyleosaurus\p{Zs}?parkpinorum|g\.\p{Zs}?parkpinorum|europelta\p{Zs}?carbonensis|e\.\p{Zs}?carbonensis|stegosaurus\p{Zs}?stenops|s\.\p{Zs}?stenops|pinacosaurus\p{Zs}?grangeri|p\.\p{Zs}?grangeri|tatisaurus\p{Zs}?oehleri|t\.\p{Zs}?oehleri|hungarosaurus\p{Zs}?tormai|h\.\p{Zs}?tormai|bienosaurus\p{Zs}?lufengensis|b\.\p{Zs}?lufengensis|fabrosaurus\p{Zs}?australis|f\.\p{Zs}?australis|chinshakiangosaurus\p{Zs}?chunghoensis|c\.\p{Zs}?chunghoensis|euoplocephalus\p{Zs}?tutus|e\.\p{Zs}?tutus|drosophila|xenopus|salmonella|g\.\p{Zs}?beringei|gorilla\p{Zs}?beringei|m\.\p{Zs}?assamensis|macaca\p{Zs}?assamensis|m\.\p{Zs}?fuscata|macaca\p{Zs}?fuscata|m\.\p{Zs}?mulatta|macaca\p{Zs}?mulatta|m\.\p{Zs}?nemestrina|macaca\p{Zs}?nemestrina|m\.\p{Zs}?sphinx|mandrillus\p{Zs}?sphinx|p\.\p{Zs}?anubis|papio\p{Zs}?anubis|p\.\p{Zs}?hamadryas|papio\p{Zs}?hamadryas|p\.\p{Zs}?paniscus|pan\p{Zs}?paniscus|p\.\p{Zs}?troglodytes|pan\p{Zs}?troglodytes'"/>
-  <let name="sec-title-regex" value="string-join(     for $x in tokenize($org-regex,'\|')     return concat('^',$x,'$')     ,'|')"/>
-  <xsl:function name="e:org-conform" as="xs:string">
-  <xsl:param name="s" as="xs:string"/>
-  <xsl:choose>
-    <xsl:when test="matches($s,'b\.\p{Zs}?subtilis')">
-      <xsl:value-of select="'B. subtilis'"/>
-    </xsl:when>
-    <xsl:when test="matches($s,'bacillus\p{Zs}?subtilis')">
-      <xsl:value-of select="'Bacillus subtilis'"/>
-    </xsl:when>
-    <xsl:when test="matches($s,'d\.\p{Zs}?melanogaster')">
-      <xsl:value-of select="'D. melanogaster'"/>
-    </xsl:when>
-    <xsl:when test="matches($s,'drosophila\p{Zs}?melanogaster')">
-      <xsl:value-of select="'Drosophila melanogaster'"/>
-    </xsl:when>
-    <xsl:when test="matches($s,'e\.\p{Zs}?coli')">
-      <xsl:value-of select="'E. coli'"/>
-    </xsl:when>
-    <xsl:when test="matches($s,'escherichia\p{Zs}?coli')">
-      <xsl:value-of select="'Escherichia coli'"/>
-    </xsl:when>
-    <xsl:when test="matches($s,'s\.\p{Zs}?pombe')">
-      <xsl:value-of select="'S. pombe'"/>
-    </xsl:when>
-    <xsl:when test="matches($s,'schizosaccharomyces\p{Zs}?pombe')">
-      <xsl:value-of select="'Schizosaccharomyces pombe'"/>
-    </xsl:when>
-    <xsl:when test="matches($s,'s\.\p{Zs}?cerevisiae')">
-      <xsl:value-of select="'S. cerevisiae'"/>
-    </xsl:when>
-    <xsl:when test="matches($s,'saccharomyces\p{Zs}?cerevisiae')">
-      <xsl:value-of select="'Saccharomyces cerevisiae'"/>
-    </xsl:when>
-    <xsl:when test="matches($s,'c\.\p{Zs}?elegans')">
-      <xsl:value-of select="'C. elegans'"/>
-    </xsl:when>
-    <xsl:when test="matches($s,'caenorhabditis\p{Zs}?elegans')">
-      <xsl:value-of select="'Caenorhabditis elegans'"/>
-    </xsl:when>
-    <xsl:when test="matches($s,'a\.\p{Zs}?thaliana')">
-      <xsl:value-of select="'A. thaliana'"/>
-    </xsl:when>
-    <xsl:when test="matches($s,'arabidopsis\p{Zs}?thaliana')">
-      <xsl:value-of select="'Arabidopsis thaliana'"/>
-    </xsl:when>
-    <xsl:when test="matches($s,'m\.\p{Zs}?thermophila')">
-      <xsl:value-of select="'M. thermophila'"/>
-    </xsl:when>
-    <xsl:when test="matches($s,'myceliophthora\p{Zs}?thermophila')">
-      <xsl:value-of select="'Myceliophthora thermophila'"/>
-    </xsl:when>
-    <xsl:when test="matches($s,'dictyostelium')">
-      <xsl:value-of select="'Dictyostelium'"/>
-    </xsl:when>
-    <xsl:when test="matches($s,'p\.\p{Zs}?falciparum')">
-      <xsl:value-of select="'P. falciparum'"/>
-    </xsl:when>
-    <xsl:when test="matches($s,'plasmodium\p{Zs}?falciparum')">
-      <xsl:value-of select="'Plasmodium falciparum'"/>
-    </xsl:when>
-    <xsl:when test="matches($s,'s\.\p{Zs}?enterica')">
-      <xsl:value-of select="'S. enterica'"/>
-    </xsl:when>
-    <xsl:when test="matches($s,'salmonella\p{Zs}?enterica')">
-      <xsl:value-of select="'Salmonella enterica'"/>
-    </xsl:when>
-    <xsl:when test="matches($s,'s\.\p{Zs}?pyogenes')">
-      <xsl:value-of select="'S. pyogenes'"/>
-    </xsl:when>
-    <xsl:when test="matches($s,'streptococcus\p{Zs}?pyogenes')">
-      <xsl:value-of select="'Streptococcus pyogenes'"/>
-    </xsl:when>
-    <xsl:when test="matches($s,'p\.\p{Zs}?dumerilii')">
-      <xsl:value-of select="'P. dumerilii'"/>
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-    <xsl:when test="matches($s,'platynereis\p{Zs}?dumerilii')">
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-    </xsl:when>
-    <xsl:when test="matches($s,'e\.\p{Zs}?cuniculi')">
-      <xsl:value-of select="'E. cuniculi'"/>
-    </xsl:when>
-    <xsl:when test="matches($s,'encephalitozoon\p{Zs}?cuniculi')">
-      <xsl:value-of select="'Encephalitozoon cuniculi'"/>
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-    <xsl:when test="matches($s,'s\.\p{Zs}?solfataricus')">
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-    </xsl:when>
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-    <xsl:when test="matches($s,'s\.\p{Zs}?mediterranea')">
-      <xsl:value-of select="'S. mediterranea'"/>
-    </xsl:when>
-    <xsl:when test="matches($s,'schmidtea\p{Zs}?mediterranea')">
-      <xsl:value-of select="'Schmidtea mediterranea'"/>
-    </xsl:when>
-    <xsl:when test="matches($s,'s\.\p{Zs}?rosetta')">
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-    <xsl:when test="matches($s,'salpingoeca\p{Zs}?rosetta')">
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-    </xsl:when>
-    <xsl:when test="matches($s,'n\.\p{Zs}?vectensis')">
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-    <xsl:when test="matches($s,'nematostella\p{Zs}?vectensis')">
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-    </xsl:when>
-    <xsl:when test="matches($s,'francisella\p{Zs}?tularensis')">
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-      </xsl:if>
-      <xsl:if test="contains($s,'sourceforge')">
-        <xsl:element name="match">
-        <xsl:value-of select="'sourceforge '"/>
-        </xsl:element>
-      </xsl:if>
-      <xsl:if test="contains($s,'bitbucket')">
-        <xsl:element name="match">
-        <xsl:value-of select="'bitbucket '"/>
-        </xsl:element>
-      </xsl:if>
-      <xsl:if test="contains($s,'assembla ')">
-        <xsl:element name="match">
-        <xsl:value-of select="'assembla '"/>
-        </xsl:element>
-      </xsl:if>
-    </xsl:element>
-  </xsl:function>
-  <xsl:function name="e:get-xrefs">
-    <xsl:param name="article"/>
-    <xsl:param name="object-id"/>
-    <xsl:param name="object-type"/>
-    <xsl:variable name="object-no" select="replace($object-id,'[^0-9]','')"/>
-    <xsl:element name="matches">
-      <xsl:for-each select="$article//xref[(@ref-type=$object-type) and not(ancestor::caption)]">
-        <xsl:variable name="rid-no" select="replace(./@rid,'[^0-9]','')"/>
-        <xsl:variable name="text-no" select="tokenize(normalize-space(replace(.,'[^0-9]',' ')),'\p{Zs}')[last()]"/>
-        <xsl:choose>
-          <xsl:when test="./@rid = $object-id">
-            <xsl:element name="match">
-              <xsl:attribute name="sec-id">
-                <xsl:value-of select="./ancestor::sec[1]/@id"/>
-              </xsl:attribute>
-              <xsl:value-of select="self::*"/>
-            </xsl:element>
-          </xsl:when>
-          <xsl:when test="contains(./@rid,'app')"/>
-          <xsl:when test="($rid-no lt $object-no) and (./following-sibling::text()[1] = '–') and (./following-sibling::*[1]/name()='xref') and (number(replace(replace(./following-sibling::xref[1]/@rid,'\-','.'),'[a-z]','')) gt number($object-no))">
-            <xsl:element name="match">
-              <xsl:attribute name="sec-id">
-                <xsl:value-of select="./ancestor::sec[1]/@id"/>
-              </xsl:attribute>
-              <xsl:value-of select="self::*"/>
-            </xsl:element>
-          </xsl:when>
-          <xsl:when test="($rid-no lt $object-no) and contains(.,$object-no) and (contains(.,'Videos') or contains(.,'videos') and contains(.,'–'))">
-            <xsl:element name="match">
-              <xsl:attribute name="sec-id">
-                <xsl:value-of select="./ancestor::sec[1]/@id"/>
-              </xsl:attribute>
-              <xsl:value-of select="self::*"/>
-            </xsl:element>
-          </xsl:when>
-          <xsl:when test="($rid-no lt $object-no) and (contains(.,'Videos') or contains(.,'videos') and contains(.,'—')) and ($text-no gt $object-no)">
-            <xsl:element name="match">
-              <xsl:attribute name="sec-id">
-                <xsl:value-of select="./ancestor::sec[1]/@id"/>
-              </xsl:attribute>
-              <xsl:value-of select="self::*"/>
-            </xsl:element>
-          </xsl:when>
-          <xsl:otherwise/>
-        </xsl:choose>
-      </xsl:for-each>
-    </xsl:element>
-  </xsl:function>
-  <xsl:function name="e:get-iso-pub-date">
-    <xsl:param name="element"/>
-    <xsl:choose>
-      <xsl:when test="$element/ancestor-or-self::article//article-meta/pub-date[(@date-type='publication') or (@date-type='pub')]/month">
-        <xsl:variable name="pub-date" select="$element/ancestor-or-self::article//article-meta/pub-date[(@date-type='publication') or (@date-type='pub')]"/>
-        <xsl:value-of select="concat($pub-date/year,'-',$pub-date/month,'-',$pub-date/day)"/>
-      </xsl:when>
-      <xsl:otherwise/>
-    </xsl:choose>
-  </xsl:function>
-  <xsl:function name="e:get-copyright-holder">
-    <xsl:param name="contrib-group"/>
-    <xsl:variable name="author-count" select="count($contrib-group/contrib[@contrib-type='author'])"/>
-    <xsl:choose>
-      <xsl:when test="$author-count lt 1"/>
-      <xsl:when test="$author-count = 1">
-        <xsl:choose>
-          <xsl:when test="$contrib-group/contrib[@contrib-type='author']/collab">
-            <xsl:value-of select="$contrib-group/contrib[@contrib-type='author']/collab[1]/text()[1]"/>
-          </xsl:when>
-          <xsl:otherwise>
-            <xsl:value-of select="$contrib-group/contrib[@contrib-type='author']/name[1]/surname[1]"/>
-          </xsl:otherwise>
-        </xsl:choose>
-      </xsl:when>
-      <xsl:when test="$author-count = 2">
-        <xsl:choose>
-          <xsl:when test="$contrib-group/contrib[@contrib-type='author']/collab">
-            <xsl:choose>
-              <xsl:when test="$contrib-group/contrib[@contrib-type='author'][1]/collab and $contrib-group/contrib[@contrib-type='author'][2]/collab">
-                <xsl:value-of select="concat($contrib-group/contrib[@contrib-type='author']/collab[1]/text()[1],' and ',$contrib-group/contrib[@contrib-type='author']/collab[2]/text()[1])"/>
-              </xsl:when>
-              <xsl:when test="$contrib-group/contrib[@contrib-type='author'][1]/collab">
-                <xsl:value-of select="concat($contrib-group/contrib[@contrib-type='author'][1]/collab[1]/text()[1],' and ',$contrib-group/contrib[@contrib-type='author'][2]/name[1]/surname[1])"/>
-              </xsl:when>
-              <xsl:otherwise>
-                <xsl:value-of select="concat($contrib-group/contrib[@contrib-type='author'][1]/name[1]/surname[1],' and ',$contrib-group/contrib[@contrib-type='author'][2]/collab[1]/text()[1])"/>
-              </xsl:otherwise>
-            </xsl:choose>
-          </xsl:when>
-          <xsl:otherwise>
-            <xsl:value-of select="concat($contrib-group/contrib[@contrib-type='author'][1]/name[1]/surname[1],' and ',$contrib-group/contrib[@contrib-type='author'][2]/name[1]/surname[1])"/>
-          </xsl:otherwise>
-        </xsl:choose>
-      </xsl:when>
-      
-      <xsl:otherwise>
-        <xsl:variable name="is-equal-contrib" select="if ($contrib-group/contrib[@contrib-type='author'][1]/@equal-contrib='yes') then true() else false()"/>
-        <xsl:choose>
-          <xsl:when test="$is-equal-contrib">
-            
-            <xsl:variable name="equal-contrib-rid" select="$contrib-group/contrib[@contrib-type='author'][1]/xref[starts-with(@rid,'equal-contrib')]/@rid"/>
-            <xsl:variable name="first-authors" select="$contrib-group/contrib[@contrib-type='author' and @equal-contrib='yes' and xref[@rid=$equal-contrib-rid] and not(preceding-sibling::contrib[not(xref[@rid=$equal-contrib-rid])])]"/>
-            <xsl:choose>
-              
-              <xsl:when test="$author-count = 3 and count($first-authors) = 3">
-                <xsl:value-of select="concat(e:get-surname($contrib-group/contrib[@contrib-type='author'][1]),                   ', ',                   e:get-surname($contrib-group/contrib[@contrib-type='author'][2]),                   ' and ',                   e:get-surname($contrib-group/contrib[@contrib-type='author'][3]))"/>
-              </xsl:when>
-              
-              <xsl:when test="count($first-authors) gt 3">
-                <xsl:variable name="first-auth-string" select="string-join(for $auth in $contrib-group/contrib[@contrib-type='author'][position() lt 4] return e:get-surname($auth),', ')"/>
-                <xsl:value-of select="concat($first-auth-string,' et al')"/>
-              </xsl:when>
-              
-              <xsl:otherwise>
-                <xsl:variable name="first-auth-string" select="string-join(for $auth in $first-authors return e:get-surname($auth),', ')"/>
-                <xsl:value-of select="concat($first-auth-string,' et al')"/>
-              </xsl:otherwise>
-            </xsl:choose>
-          </xsl:when>
-          
-          <xsl:otherwise>
-            <xsl:value-of select="concat(e:get-surname($contrib-group/contrib[@contrib-type='author'][1]),' et al')"/>
-          </xsl:otherwise>
-        </xsl:choose>
-      </xsl:otherwise>
-    </xsl:choose>
-  </xsl:function>
-  <xsl:function name="e:get-surname" as="text()">
-    <xsl:param name="contrib"/>
-    <xsl:choose>
-      <xsl:when test="$contrib/collab">
-        <xsl:value-of select="$contrib/collab[1]/text()[1]"/>
-      </xsl:when>
-      <xsl:otherwise>
-        <xsl:value-of select="$contrib//name[1]/surname[1]"/>
-      </xsl:otherwise>
-    </xsl:choose>
-  </xsl:function>
-  <xsl:function name="e:insight-box" as="element()">
-    <xsl:param name="box" as="xs:string"/>
-    <xsl:param name="cite-text" as="xs:string"/>
-    <xsl:variable name="box-text" select="substring-after(substring-after($box,'article'),' ')"/> 
-    
-    <xsl:element name="list">
-      <xsl:for-each select="tokenize($cite-text,'\p{Zs}')">
-        <xsl:choose>
-          <xsl:when test="contains($box-text,.)"/>
-          <xsl:otherwise>
-            <xsl:element name="item">
-              <xsl:attribute name="type">cite</xsl:attribute>
-              <xsl:value-of select="."/>
-            </xsl:element>
-          </xsl:otherwise>
-        </xsl:choose>
-      </xsl:for-each>
-      <xsl:for-each select="tokenize($box-text,'\p{Zs}')">
-        <xsl:choose>
-          <xsl:when test="contains($cite-text,.)"/>
-          <xsl:otherwise>
-            <xsl:element name="item">
-              <xsl:attribute name="type">box</xsl:attribute>
-              <xsl:value-of select="."/>
-            </xsl:element>
-          </xsl:otherwise>
-        </xsl:choose>
-      </xsl:for-each>
-    </xsl:element>
-  </xsl:function>
-  <let name="latin-regex" value="'in\p{Zs}+vitro|ex\p{Zs}+vitro|in\p{Zs}+vivo|ex\p{Zs}+vivo|a\p{Zs}+priori|a\p{Zs}+posteriori|de\p{Zs}+novo|in\p{Zs}+utero|in\p{Zs}+natura|in\p{Zs}+situ|in\p{Zs}+planta|in\p{Zs}+cellulo|rete\p{Zs}+mirabile|nomen\p{Zs}+novum| sensu |ad\p{Zs}+libitum|in\p{Zs}+ovo'"/>
-  <xsl:function name="e:get-latin-terms" as="element()">
-    <xsl:param name="article" as="element()"/>
-    <xsl:param name="regex" as="xs:string"/>
-    
-    <xsl:variable name="roman-text" select="lower-case(       string-join(for $x in $article/*[local-name() = 'body' or local-name() = 'back']//*       return       if ($x/ancestor-or-self::sec[@sec-type='additional-information']) then ()       else if ($x/ancestor-or-self::ref-list) then ()       else if ($x/local-name() = 'italic') then ()       else $x/text(),' '))"/>
-    <xsl:variable name="italic-text" select="lower-case(string-join($article//*:italic[not(ancestor::ref-list) and not(ancestor::sec[@sec-type='additional-information'])],' '))"/>
-    
-    
-    <xsl:element name="result">
-      <xsl:choose>
-        <xsl:when test="matches($roman-text,$regex)">
-          <xsl:element name="list">
-            <xsl:attribute name="list-type">roman</xsl:attribute>
-            <xsl:for-each select="tokenize($regex,'\|')">
-              <xsl:variable name="display" select="replace(replace(.,'\\p\{Zs\}\+',' '),'^ | $','')"/>
-              <xsl:element name="match">
-                <xsl:attribute name="count">
-                  <xsl:value-of select="count(tokenize($roman-text,.)) - 1"/>
-                </xsl:attribute>
-                <xsl:value-of select="$display"/>
-              </xsl:element>
-            </xsl:for-each>
-          </xsl:element>
-        </xsl:when>
-        <xsl:otherwise>
-          <xsl:element name="list">
-            <xsl:attribute name="list-type">roman</xsl:attribute>
-          </xsl:element>
-        </xsl:otherwise>
-      </xsl:choose>
-      <xsl:choose>
-        <xsl:when test="matches($italic-text,$regex)">
-          <xsl:element name="list">
-            <xsl:attribute name="list-type">italic</xsl:attribute>
-            <xsl:for-each select="tokenize($regex,'\|')">
-              <xsl:variable name="display" select="replace(.,'\\p\{Zs\}\+',' ')"/>
-              <xsl:element name="match">
-                <xsl:attribute name="count">
-                  <xsl:value-of select="count(tokenize($italic-text,.)) - 1"/>
-                </xsl:attribute>
-                <xsl:value-of select="$display"/>
-              </xsl:element>
-            </xsl:for-each>
-          </xsl:element>
-        </xsl:when>
-        <xsl:otherwise>
-          <xsl:element name="list">
-            <xsl:attribute name="list-type">italic</xsl:attribute>
-          </xsl:element>
-        </xsl:otherwise>
-      </xsl:choose>
-    </xsl:element>
-  </xsl:function>
-  <xsl:function name="e:print-latin-terms" as="xs:string">
-    <xsl:param name="list" as="element()"/>
-    <xsl:value-of select="string-join(       for $term in $list//*:match[@count != '0']        return if (number($term/@count) gt 1) then concat($term/@count,' instances of ',$term)       else concat($term/@count,' instance of ',$term)       ,', ')"/>
-  </xsl:function>
-  <xsl:function name="e:list-panels">
-    <xsl:param name="caption" as="xs:string"/>
-    <xsl:element name="list">
-      <xsl:for-each select="tokenize($caption,'\.\p{Zs}+')">
-        <xsl:if test="matches(.,'^[B-K]\p{P}?[A-K]?\.?\p{Zs}+')">
-          <xsl:element name="item">
-            <xsl:attribute name="token">
-              <xsl:value-of select="substring-before(.,' ')"/>
-            </xsl:attribute>
-            <xsl:value-of select="."/>
-          </xsl:element>
-        </xsl:if>
-      </xsl:for-each>
-    </xsl:element>
-  </xsl:function>
-  <xsl:function name="e:get-weekday" as="xs:integer?">
-    <xsl:param name="date" as="xs:anyAtomicType?"/>
-    <xsl:sequence select="       if (empty($date)) then ()       else xs:integer((xs:date($date) - xs:date('1901-01-06')) div xs:dayTimeDuration('P1D')) mod 7       "/>
-  </xsl:function>
-  <xsl:function name="e:line-count" as="xs:integer">
-    <xsl:param name="arg" as="xs:string?"/>
-    
-    <xsl:sequence select="count(tokenize($arg,'(\r\n?|\n\r?)'))"/>
-    
-  </xsl:function>
-  <pattern id="article-metadata">
-    <rule context="abstract[not(@abstract-type)]/sec" id="abstract-sec-titles">
-      <let name="pos" value="count(ancestor::abstract/sec) - count(following-sibling::sec)"/>
-      <report see="https://elifeproduction.slab.com/posts/abstracts-digests-and-impact-statements-tiau2k6x#clintrial-conformance-5" test="starts-with(lower-case(title),'clinical trial number') and not(descendant::related-object[@document-id-type='clinical-trial-number'])" role="error" id="clintrial-conformance-9">A section with the title <value-of select="title"/> in the abstract must have at least one related-object element that contains all the information related to the clinical trial. This one does not.</report>
-    </rule>
-  </pattern>
-  <pattern id="root-pattern">
-    <rule context="root" id="root-rule">
-      <assert test="descendant::abstract[not(@abstract-type)]/sec" role="error" id="abstract-sec-titles-xspec-assert">abstract[not(@abstract-type)]/sec must be present.</assert>
-    </rule>
-  </pattern>
-</schema>
\ No newline at end of file
diff --git a/test/tests/gen/abstract-sec-titles/clintrial-conformance-9/fail.xml b/test/tests/gen/abstract-sec-titles/clintrial-conformance-9/fail.xml
deleted file mode 100644
index c20bbde1ba..0000000000
--- a/test/tests/gen/abstract-sec-titles/clintrial-conformance-9/fail.xml
+++ /dev/null
@@ -1,29 +0,0 @@
-<?oxygen SCHSchema="clintrial-conformance-9.sch"?>
-<!--Context: abstract[not(@abstract-type)]/sec
-Test: report    starts-with(lower-case(title),'clinical trial number') and not(descendant::related-object[@document-id-type='clinical-trial-number'])
-Message: A section with the title  in the abstract must have at least one related-object element that contains all the information related to the clinical trial. This one does not. -->
-<root xmlns:xlink="http://www.w3.org/1999/xlink" xmlns:mml="http://www.w3.org/1998/Math/MathML" xmlns:ali="http://www.niso.org/schemas/ali/1.0/">
-  <article>
-    <abstract>
-      <sec id="abs1">
-        <title>Background:</title>
-      </sec>
-      <sec id="abs2">
-        <title>Methods:</title>
-      </sec>
-      <sec id="abs3">
-        <title>Results:</title>
-      </sec>
-      <sec id="abs4">
-        <title>Conclusions:</title>
-      </sec>
-      <sec id="abs5">
-        <title>Funding:</title>
-      </sec>
-      <sec id="abs6">
-        <title>Clinical trial number:</title>
-        <p><ext-link ext-link-type="uri" xlink:href="https://clinicaltrials.gov/">https://clinicaltrials.gov/</ext-link> (CTN1234567890).</p>
-      </sec>
-    </abstract>
-  </article>
-</root>
\ No newline at end of file
diff --git a/test/tests/gen/abstract-sec-titles/clintrial-conformance-9/pass.xml b/test/tests/gen/abstract-sec-titles/clintrial-conformance-9/pass.xml
deleted file mode 100644
index 87d919d885..0000000000
--- a/test/tests/gen/abstract-sec-titles/clintrial-conformance-9/pass.xml
+++ /dev/null
@@ -1,29 +0,0 @@
-<?oxygen SCHSchema="clintrial-conformance-9.sch"?>
-<!--Context: abstract[not(@abstract-type)]/sec
-Test: report    starts-with(lower-case(title),'clinical trial number') and not(descendant::related-object[@document-id-type='clinical-trial-number'])
-Message: A section with the title  in the abstract must have at least one related-object element that contains all the information related to the clinical trial. This one does not. -->
-<root xmlns:xlink="http://www.w3.org/1999/xlink" xmlns:mml="http://www.w3.org/1998/Math/MathML" xmlns:ali="http://www.niso.org/schemas/ali/1.0/">
-  <article>
-    <abstract>
-      <sec id="abs1">
-        <title>Background:</title>
-      </sec>
-      <sec id="abs2">
-        <title>Methods:</title>
-      </sec>
-      <sec id="abs3">
-        <title>Results:</title>
-      </sec>
-      <sec id="abs4">
-        <title>Conclusions:</title>
-      </sec>
-      <sec id="abs5">
-        <title>Funding:</title>
-      </sec>
-      <sec id="abs6">
-        <title>Clinical trial number:</title>
-        <p><related-object document-id-type="clinical-trial-number" xlink:href="https://clinicaltrials.gov/">CTN1234567890</related-object>.</p>
-      </sec>
-    </abstract>
-  </article>
-</root>
\ No newline at end of file
diff --git a/test/tests/gen/grant-doi-tests/grant-doi-test-1/fail.xml b/test/tests/gen/grant-doi-tests/grant-doi-test-1/fail.xml
deleted file mode 100644
index f9c95a6950..0000000000
--- a/test/tests/gen/grant-doi-tests/grant-doi-test-1/fail.xml
+++ /dev/null
@@ -1,25 +0,0 @@
-<?oxygen SCHSchema="grant-doi-test-1.sch"?>
-<!--Context: funding-group/award-group[funding-source/institution-wrap/institution-id]
-Test: report    $grant-matches
-Message: Funding entry from  has an award-id () which could be replaced with a grant DOI. The following grant DOIs are possibilities: . -->
-<root xmlns:xlink="http://www.w3.org/1999/xlink" xmlns:mml="http://www.w3.org/1998/Math/MathML" xmlns:ali="http://www.niso.org/schemas/ali/1.0/">
-  <article>
-    <funding-group>
-      <award-group id="fund1">
-        <funding-source>
-          <institution-wrap>
-            <institution-id institution-id-type="FundRef">http://dx.doi.org/10.13039/100000015</institution-id>
-            <institution>US Department of Energy</institution>
-          </institution-wrap>
-        </funding-source>
-        <award-id>42796</award-id>
-        <principal-award-recipient>
-          <name>
-            <surname>Claus</surname>
-            <given-names>Santa</given-names>
-          </name>
-        </principal-award-recipient>
-      </award-group>
-    </funding-group>
-  </article>
-</root>
\ No newline at end of file
diff --git a/test/tests/gen/grant-doi-tests/grant-doi-test-1/grant-doi-test-1.sch b/test/tests/gen/grant-doi-tests/grant-doi-test-1/grant-doi-test-1.sch
deleted file mode 100644
index cd411f1de7..0000000000
--- a/test/tests/gen/grant-doi-tests/grant-doi-test-1/grant-doi-test-1.sch
+++ /dev/null
@@ -1,1300 +0,0 @@
-<schema xmlns="http://purl.oclc.org/dsdl/schematron" xmlns:xlink="http://www.w3.org/1999/xlink" xmlns:xsl="http://www.w3.org/1999/XSL/Transform" xmlns:java="http://www.java.com/" xmlns:file="java.io.File" xmlns:ali="http://www.niso.org/schemas/ali/1.0/" xmlns:mml="http://www.w3.org/1998/Math/MathML" queryBinding="xslt2">
-  <title>eLife Schematron</title>
-  <ns uri="http://www.niso.org/schemas/ali/1.0/" prefix="ali"/>
-  <ns uri="http://www.w3.org/XML/1998/namespace" prefix="xml"/>
-  <ns uri="http://www.w3.org/1999/xlink" prefix="xlink"/>
-  <ns uri="http://www.w3.org/2001/XInclude" prefix="xi"/>
-  <ns uri="http://www.w3.org/1998/Math/MathML" prefix="mml"/>
-  <ns uri="http://saxon.sf.net/" prefix="saxon"/>
-  <ns uri="http://purl.org/dc/terms/" prefix="dc"/>
-  <ns uri="http://www.w3.org/2001/XMLSchema" prefix="xs"/>
-  <ns uri="https://elifesciences.org/namespace" prefix="e"/>
-  <ns uri="java.io.File" prefix="file"/>
-  <ns uri="http://www.java.com/" prefix="java"/>
-  <let name="features-subj" value="('Feature Article', 'Insight', 'Editorial')"/>
-  <let name="features-article-types" value="('article-commentary','editorial','discussion')"/>
-  <let name="research-subj" value="('Research Article', 'Short Report', 'Tools and Resources', 'Research Advance', 'Registered Report', 'Replication Study', 'Research Communication', 'Correction', 'Retraction', 'Scientific Correspondence', 'Review Article')"/>
-  <let name="notice-article-types" value="('correction','retraction','expression-of-concern')"/>
-  <let name="notice-display-types" value="('Correction','Retraction','Expression of Concern')"/>
-  <let name="allowed-article-types" value="('research-article','review-article',$features-article-types, $notice-article-types)"/>
-  <let name="allowed-disp-subj" value="($research-subj, $features-subj)"/>
-  <let name="MSAs" value="('Biochemistry and Chemical Biology', 'Cancer Biology', 'Cell Biology', 'Chromosomes and Gene Expression', 'Computational and Systems Biology', 'Developmental Biology', 'Ecology', 'Epidemiology and Global Health', 'Evolutionary Biology', 'Genetics and Genomics', 'Medicine', 'Immunology and Inflammation', 'Microbiology and Infectious Disease', 'Neuroscience', 'Physics of Living Systems', 'Plant Biology', 'Stem Cells and Regenerative Medicine', 'Structural Biology and Molecular Biophysics')"/>
-  <let name="funders" value="'../../../../../src/funders.xml'"/>
-  <xsl:function name="e:is-prc" as="xs:boolean">
-    <xsl:param name="elem" as="node()"/>
-    <xsl:choose>
-      <xsl:when test="$elem/name()='article'">
-        <xsl:value-of select="e:is-prc-helper($elem)"/>
-      </xsl:when>
-      <xsl:otherwise>
-        <xsl:value-of select="e:is-prc-helper($elem/ancestor::article[1])"/>
-      </xsl:otherwise>
-    </xsl:choose>
-  </xsl:function>
-  <xsl:function name="e:is-prc-helper" as="xs:boolean">
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-        <xsl:variable name="d9" select="number(substring($s,9,1))"/>
-        <xsl:variable name="d10" select="number(substring($s,10,1)) * 3"/>
-        <xsl:variable name="d11" select="number(substring($s,11,1))"/>
-        <xsl:variable name="d12" select="number(substring($s,12,1)) * 3"/>
-        <xsl:variable name="d13" select="number(substring($s,13,1))"/>
-        <xsl:value-of select="number($d1 + $d2 + $d3 + $d4 + $d5 + $d6 + $d7 + $d8 + $d9 + $d10 + $d11 + $d12 + $d13) mod 10"/>
-      </xsl:when>
-      <xsl:otherwise>
-        <xsl:value-of select="number('1')"/>
-      </xsl:otherwise>
-    </xsl:choose>
-  </xsl:function>
-  <xsl:function name="e:escape-for-regex" as="xs:string">
-    <xsl:param name="arg" as="xs:string?"/>
-    <xsl:sequence select="replace($arg,'(\.|\[|\]|\\|\||\-|\^|\$|\?|\*|\+|\{|\}|\(|\))','\\$1')"/>
-  </xsl:function>
-  <xsl:function name="e:get-ordinal" as="xs:string">
-    <xsl:param name="value" as="xs:integer?"/>
-    <xsl:if test="translate(string($value), '0123456789', '') = '' and number($value) &gt; 0">
-      <xsl:variable name="mod100" select="$value mod 100"/>
-      <xsl:variable name="mod10" select="$value mod 10"/>
-      <xsl:choose>
-        <xsl:when test="$mod100 = 11 or $mod100 = 12 or $mod100 = 13">
-          <xsl:value-of select="concat($value,'th')"/>
-        </xsl:when>
-        <xsl:when test="$mod10 = 1">
-          <xsl:value-of select="concat($value,'st')"/>
-        </xsl:when>
-        <xsl:when test="$mod10 = 2">
-          <xsl:value-of select="concat($value,'nd')"/>
-        </xsl:when>
-        <xsl:when test="$mod10 = 3">
-          <xsl:value-of select="concat($value,'rd')"/>
-        </xsl:when>
-        <xsl:otherwise>
-          <xsl:value-of select="concat($value,'th')"/>
-        </xsl:otherwise>
-      </xsl:choose>
-    </xsl:if>
-  </xsl:function>
-  <let name="org-regex" value="'b\.\p{Zs}?subtilis|bacillus\p{Zs}?subtilis|d\.\p{Zs}?melanogaster|drosophila\p{Zs}?melanogaster|e\.\p{Zs}?coli|escherichia\p{Zs}?coli|s\.\p{Zs}?pombe|schizosaccharomyces\p{Zs}?pombe|s\.\p{Zs}?cerevisiae|saccharomyces\p{Zs}?cerevisiae|c\.\p{Zs}?elegans|caenorhabditis\p{Zs}?elegans|a\.\p{Zs}?thaliana|arabidopsis\p{Zs}?thaliana|m\.\p{Zs}?thermophila|myceliophthora\p{Zs}?thermophila|dictyostelium|p\.\p{Zs}?falciparum|plasmodium\p{Zs}?falciparum|s\.\p{Zs}?enterica|salmonella\p{Zs}?enterica|s\.\p{Zs}?pyogenes|streptococcus\p{Zs}?pyogenes|p\.\p{Zs}?dumerilii|platynereis\p{Zs}?dumerilii|p\.\p{Zs}?cynocephalus|papio\p{Zs}?cynocephalus|o\.\p{Zs}?fasciatus|oncopeltus\p{Zs}?fasciatus|n\.\p{Zs}?crassa|neurospora\p{Zs}?crassa|c\.\p{Zs}?intestinalis|ciona\p{Zs}?intestinalis|e\.\p{Zs}?cuniculi|encephalitozoon\p{Zs}?cuniculi|h\.\p{Zs}?salinarum|halobacterium\p{Zs}?salinarum|s\.\p{Zs}?solfataricus|sulfolobus\p{Zs}?solfataricus|s\.\p{Zs}?mediterranea|schmidtea\p{Zs}?mediterranea|s\.\p{Zs}?rosetta|salpingoeca\p{Zs}?rosetta|n\.\p{Zs}?vectensis|nematostella\p{Zs}?vectensis|s\.\p{Zs}?aureus|staphylococcus\p{Zs}?aureus|v\.\p{Zs}?cholerae|vibrio\p{Zs}?cholerae|t\.\p{Zs}?thermophila|tetrahymena\p{Zs}?thermophila|c\.\p{Zs}?reinhardtii|chlamydomonas\p{Zs}?reinhardtii|n\.\p{Zs}?attenuata|nicotiana\p{Zs}?attenuata|e\.\p{Zs}?carotovora|erwinia\p{Zs}?carotovora|e\.\p{Zs}?faecalis|h\.\p{Zs}?sapiens|homo\p{Zs}?sapiens|c\.\p{Zs}?trachomatis|chlamydia\p{Zs}?trachomatis|enterococcus\p{Zs}?faecalis|x\.\p{Zs}?laevis|xenopus\p{Zs}?laevis|x\.\p{Zs}?tropicalis|xenopus\p{Zs}?tropicalis|m\.\p{Zs}?musculus|mus\p{Zs}?musculus|d\.\p{Zs}?immigrans|drosophila\p{Zs}?immigrans|d\.\p{Zs}?subobscura|drosophila\p{Zs}?subobscura|d\.\p{Zs}?affinis|drosophila\p{Zs}?affinis|d\.\p{Zs}?obscura|drosophila\p{Zs}?obscura|f\.\p{Zs}?tularensis|francisella\p{Zs}?tularensis|p\.\p{Zs}?plantaginis|podosphaera\p{Zs}?plantaginis|p\.\p{Zs}?lanceolata|plantago\p{Zs}?lanceolata|m\.\p{Zs}?trossulus|mytilus\p{Zs}?trossulus|m\.\p{Zs}?edulis|mytilus\p{Zs}?edulis|m\.\p{Zs}?chilensis|mytilus\p{Zs}?chilensis|u\.\p{Zs}?maydis|ustilago\p{Zs}?maydis|p\.\p{Zs}?knowlesi|plasmodium\p{Zs}?knowlesi|p\.\p{Zs}?aeruginosa|pseudomonas\p{Zs}?aeruginosa|t\.\p{Zs}?brucei|trypanosoma\p{Zs}?brucei|t\.\p{Zs}?gondii|toxoplasma\p{Zs}?gondii|d\.\p{Zs}?rerio|danio\p{Zs}?rerio|yimenosaurus|lesothosaurus\p{Zs}?diagnosticus|l\.\p{Zs}?diagnosticus|scelidosaurus\p{Zs}?harrisonii|s\.\p{Zs}?harrisonii|haya\p{Zs}?griva|h\.\p{Zs}?griva|polacanthus\p{Zs}?foxii|p\.\p{Zs}?foxii|scutellosaurus\p{Zs}?lawleri|s\.\p{Zs}?lawleri|saichania\p{Zs}?chulsanensis|s\.\p{Zs}?chulsanensis|gargoyleosaurus\p{Zs}?parkpinorum|g\.\p{Zs}?parkpinorum|europelta\p{Zs}?carbonensis|e\.\p{Zs}?carbonensis|stegosaurus\p{Zs}?stenops|s\.\p{Zs}?stenops|pinacosaurus\p{Zs}?grangeri|p\.\p{Zs}?grangeri|tatisaurus\p{Zs}?oehleri|t\.\p{Zs}?oehleri|hungarosaurus\p{Zs}?tormai|h\.\p{Zs}?tormai|bienosaurus\p{Zs}?lufengensis|b\.\p{Zs}?lufengensis|fabrosaurus\p{Zs}?australis|f\.\p{Zs}?australis|chinshakiangosaurus\p{Zs}?chunghoensis|c\.\p{Zs}?chunghoensis|euoplocephalus\p{Zs}?tutus|e\.\p{Zs}?tutus|drosophila|xenopus|salmonella|g\.\p{Zs}?beringei|gorilla\p{Zs}?beringei|m\.\p{Zs}?assamensis|macaca\p{Zs}?assamensis|m\.\p{Zs}?fuscata|macaca\p{Zs}?fuscata|m\.\p{Zs}?mulatta|macaca\p{Zs}?mulatta|m\.\p{Zs}?nemestrina|macaca\p{Zs}?nemestrina|m\.\p{Zs}?sphinx|mandrillus\p{Zs}?sphinx|p\.\p{Zs}?anubis|papio\p{Zs}?anubis|p\.\p{Zs}?hamadryas|papio\p{Zs}?hamadryas|p\.\p{Zs}?paniscus|pan\p{Zs}?paniscus|p\.\p{Zs}?troglodytes|pan\p{Zs}?troglodytes'"/>
-  <let name="sec-title-regex" value="string-join(     for $x in tokenize($org-regex,'\|')     return concat('^',$x,'$')     ,'|')"/>
-  <xsl:function name="e:org-conform" as="xs:string">
-  <xsl:param name="s" as="xs:string"/>
-  <xsl:choose>
-    <xsl:when test="matches($s,'b\.\p{Zs}?subtilis')">
-      <xsl:value-of select="'B. subtilis'"/>
-    </xsl:when>
-    <xsl:when test="matches($s,'bacillus\p{Zs}?subtilis')">
-      <xsl:value-of select="'Bacillus subtilis'"/>
-    </xsl:when>
-    <xsl:when test="matches($s,'d\.\p{Zs}?melanogaster')">
-      <xsl:value-of select="'D. melanogaster'"/>
-    </xsl:when>
-    <xsl:when test="matches($s,'drosophila\p{Zs}?melanogaster')">
-      <xsl:value-of select="'Drosophila melanogaster'"/>
-    </xsl:when>
-    <xsl:when test="matches($s,'e\.\p{Zs}?coli')">
-      <xsl:value-of select="'E. coli'"/>
-    </xsl:when>
-    <xsl:when test="matches($s,'escherichia\p{Zs}?coli')">
-      <xsl:value-of select="'Escherichia coli'"/>
-    </xsl:when>
-    <xsl:when test="matches($s,'s\.\p{Zs}?pombe')">
-      <xsl:value-of select="'S. pombe'"/>
-    </xsl:when>
-    <xsl:when test="matches($s,'schizosaccharomyces\p{Zs}?pombe')">
-      <xsl:value-of select="'Schizosaccharomyces pombe'"/>
-    </xsl:when>
-    <xsl:when test="matches($s,'s\.\p{Zs}?cerevisiae')">
-      <xsl:value-of select="'S. cerevisiae'"/>
-    </xsl:when>
-    <xsl:when test="matches($s,'saccharomyces\p{Zs}?cerevisiae')">
-      <xsl:value-of select="'Saccharomyces cerevisiae'"/>
-    </xsl:when>
-    <xsl:when test="matches($s,'c\.\p{Zs}?elegans')">
-      <xsl:value-of select="'C. elegans'"/>
-    </xsl:when>
-    <xsl:when test="matches($s,'caenorhabditis\p{Zs}?elegans')">
-      <xsl:value-of select="'Caenorhabditis elegans'"/>
-    </xsl:when>
-    <xsl:when test="matches($s,'a\.\p{Zs}?thaliana')">
-      <xsl:value-of select="'A. thaliana'"/>
-    </xsl:when>
-    <xsl:when test="matches($s,'arabidopsis\p{Zs}?thaliana')">
-      <xsl:value-of select="'Arabidopsis thaliana'"/>
-    </xsl:when>
-    <xsl:when test="matches($s,'m\.\p{Zs}?thermophila')">
-      <xsl:value-of select="'M. thermophila'"/>
-    </xsl:when>
-    <xsl:when test="matches($s,'myceliophthora\p{Zs}?thermophila')">
-      <xsl:value-of select="'Myceliophthora thermophila'"/>
-    </xsl:when>
-    <xsl:when test="matches($s,'dictyostelium')">
-      <xsl:value-of select="'Dictyostelium'"/>
-    </xsl:when>
-    <xsl:when test="matches($s,'p\.\p{Zs}?falciparum')">
-      <xsl:value-of select="'P. falciparum'"/>
-    </xsl:when>
-    <xsl:when test="matches($s,'plasmodium\p{Zs}?falciparum')">
-      <xsl:value-of select="'Plasmodium falciparum'"/>
-    </xsl:when>
-    <xsl:when test="matches($s,'s\.\p{Zs}?enterica')">
-      <xsl:value-of select="'S. enterica'"/>
-    </xsl:when>
-    <xsl:when test="matches($s,'salmonella\p{Zs}?enterica')">
-      <xsl:value-of select="'Salmonella enterica'"/>
-    </xsl:when>
-    <xsl:when test="matches($s,'s\.\p{Zs}?pyogenes')">
-      <xsl:value-of select="'S. pyogenes'"/>
-    </xsl:when>
-    <xsl:when test="matches($s,'streptococcus\p{Zs}?pyogenes')">
-      <xsl:value-of select="'Streptococcus pyogenes'"/>
-    </xsl:when>
-    <xsl:when test="matches($s,'p\.\p{Zs}?dumerilii')">
-      <xsl:value-of select="'P. dumerilii'"/>
-    </xsl:when>
-    <xsl:when test="matches($s,'platynereis\p{Zs}?dumerilii')">
-      <xsl:value-of select="'Platynereis dumerilii'"/>
-    </xsl:when>
-    <xsl:when test="matches($s,'p\.\p{Zs}?cynocephalus')">
-      <xsl:value-of select="'P. cynocephalus'"/>
-    </xsl:when>
-    <xsl:when test="matches($s,'papio\p{Zs}?cynocephalus')">
-      <xsl:value-of select="'Papio cynocephalus'"/>
-    </xsl:when>
-    <xsl:when test="matches($s,'o\.\p{Zs}?fasciatus')">
-      <xsl:value-of select="'O. fasciatus'"/>
-    </xsl:when>
-    <xsl:when test="matches($s,'oncopeltus\p{Zs}?fasciatus')">
-      <xsl:value-of select="'Oncopeltus fasciatus'"/>
-    </xsl:when>
-    <xsl:when test="matches($s,'n\.\p{Zs}?crassa')">
-      <xsl:value-of select="'N. crassa'"/>
-    </xsl:when>
-    <xsl:when test="matches($s,'neurospora\p{Zs}?crassa')">
-      <xsl:value-of select="'Neurospora crassa'"/>
-    </xsl:when>
-    <xsl:when test="matches($s,'c\.\p{Zs}?intestinalis')">
-      <xsl:value-of select="'C. intestinalis'"/>
-    </xsl:when>
-    <xsl:when test="matches($s,'ciona\p{Zs}?intestinalis')">
-      <xsl:value-of select="'Ciona intestinalis'"/>
-    </xsl:when>
-    <xsl:when test="matches($s,'e\.\p{Zs}?cuniculi')">
-      <xsl:value-of select="'E. cuniculi'"/>
-    </xsl:when>
-    <xsl:when test="matches($s,'encephalitozoon\p{Zs}?cuniculi')">
-      <xsl:value-of select="'Encephalitozoon cuniculi'"/>
-    </xsl:when>
-    <xsl:when test="matches($s,'h\.\p{Zs}?salinarum')">
-      <xsl:value-of select="'H. salinarum'"/>
-    </xsl:when>
-    <xsl:when test="matches($s,'halobacterium\p{Zs}?salinarum')">
-      <xsl:value-of select="'Halobacterium salinarum'"/>
-    </xsl:when>
-    <xsl:when test="matches($s,'s\.\p{Zs}?solfataricus')">
-      <xsl:value-of select="'S. solfataricus'"/>
-    </xsl:when>
-    <xsl:when test="matches($s,'sulfolobus\p{Zs}?solfataricus')">
-      <xsl:value-of select="'Sulfolobus solfataricus'"/>
-    </xsl:when>
-    <xsl:when test="matches($s,'s\.\p{Zs}?mediterranea')">
-      <xsl:value-of select="'S. mediterranea'"/>
-    </xsl:when>
-    <xsl:when test="matches($s,'schmidtea\p{Zs}?mediterranea')">
-      <xsl:value-of select="'Schmidtea mediterranea'"/>
-    </xsl:when>
-    <xsl:when test="matches($s,'s\.\p{Zs}?rosetta')">
-      <xsl:value-of select="'S. rosetta'"/>
-    </xsl:when>
-    <xsl:when test="matches($s,'salpingoeca\p{Zs}?rosetta')">
-      <xsl:value-of select="'Salpingoeca rosetta'"/>
-    </xsl:when>
-    <xsl:when test="matches($s,'n\.\p{Zs}?vectensis')">
-      <xsl:value-of select="'N. vectensis'"/>
-    </xsl:when>
-    <xsl:when test="matches($s,'nematostella\p{Zs}?vectensis')">
-      <xsl:value-of select="'Nematostella vectensis'"/>
-    </xsl:when>
-    <xsl:when test="matches($s,'s\.\p{Zs}?aureus')">
-      <xsl:value-of select="'S. aureus'"/>
-    </xsl:when>
-    <xsl:when test="matches($s,'staphylococcus\p{Zs}?aureus')">
-      <xsl:value-of select="'Staphylococcus aureus'"/>
-    </xsl:when>
-    <xsl:when test="matches($s,'v\.\p{Zs}?cholerae')">
-      <xsl:value-of select="'V. cholerae'"/>
-    </xsl:when>
-    <xsl:when test="matches($s,'vibrio\p{Zs}?cholerae')">
-      <xsl:value-of select="'Vibrio cholerae'"/>
-    </xsl:when>
-    <xsl:when test="matches($s,'t\.\p{Zs}?thermophila')">
-      <xsl:value-of select="'T. thermophila'"/>
-    </xsl:when>
-    <xsl:when test="matches($s,'tetrahymena\p{Zs}?thermophila')">
-      <xsl:value-of select="'Tetrahymena thermophila'"/>
-    </xsl:when>
-    <xsl:when test="matches($s,'c\.\p{Zs}?reinhardtii')">
-      <xsl:value-of select="'C. reinhardtii'"/>
-    </xsl:when>
-    <xsl:when test="matches($s,'chlamydomonas\p{Zs}?reinhardtii')">
-      <xsl:value-of select="'Chlamydomonas reinhardtii'"/>
-    </xsl:when>
-    <xsl:when test="matches($s,'n\.\p{Zs}?attenuata')">
-      <xsl:value-of select="'N. attenuata'"/>
-    </xsl:when>
-    <xsl:when test="matches($s,'nicotiana\p{Zs}?attenuata')">
-      <xsl:value-of select="'Nicotiana attenuata'"/>
-    </xsl:when>
-    <xsl:when test="matches($s,'e\.\p{Zs}?carotovora')">
-      <xsl:value-of select="'E. carotovora'"/>
-    </xsl:when>
-    <xsl:when test="matches($s,'erwinia\p{Zs}?carotovora')">
-      <xsl:value-of select="'Erwinia carotovora'"/>
-    </xsl:when>
-    <xsl:when test="matches($s,'e\.\p{Zs}?faecalis')">
-      <xsl:value-of select="'E. faecalis'"/>
-    </xsl:when>
-    <xsl:when test="matches($s,'h\.\p{Zs}?sapiens')">
-      <xsl:value-of select="'H. sapiens'"/>
-    </xsl:when>
-    <xsl:when test="matches($s,'homo\p{Zs}?sapiens')">
-      <xsl:value-of select="'Homo sapiens'"/>
-    </xsl:when>
-    <xsl:when test="matches($s,'c\.\p{Zs}?trachomatis')">
-      <xsl:value-of select="'C. trachomatis'"/>
-    </xsl:when>
-    <xsl:when test="matches($s,'chlamydia\p{Zs}?trachomatis')">
-      <xsl:value-of select="'Chlamydia trachomatis'"/>
-    </xsl:when>
-    <xsl:when test="matches($s,'enterococcus\p{Zs}?faecalis')">
-      <xsl:value-of select="'Enterococcus faecalis'"/>
-    </xsl:when>
-    <xsl:when test="matches($s,'x\.\p{Zs}?laevis')">
-      <xsl:value-of select="'X. laevis'"/>
-    </xsl:when>
-    <xsl:when test="matches($s,'xenopus\p{Zs}?laevis')">
-      <xsl:value-of select="'Xenopus laevis'"/>
-    </xsl:when>
-    <xsl:when test="matches($s,'x\.\p{Zs}?tropicalis')">
-      <xsl:value-of select="'X. tropicalis'"/>
-    </xsl:when>
-    <xsl:when test="matches($s,'xenopus\p{Zs}?tropicalis')">
-      <xsl:value-of select="'Xenopus tropicalis'"/>
-    </xsl:when>
-    <xsl:when test="matches($s,'m\.\p{Zs}?musculus')">
-      <xsl:value-of select="'M. musculus'"/>
-    </xsl:when>
-    <xsl:when test="matches($s,'mus\p{Zs}?musculus')">
-      <xsl:value-of select="'Mus musculus'"/>
-    </xsl:when>
-    <xsl:when test="matches($s,'d\.\p{Zs}?immigrans')">
-      <xsl:value-of select="'D. immigrans'"/>
-    </xsl:when>
-    <xsl:when test="matches($s,'drosophila\p{Zs}?immigrans')">
-      <xsl:value-of select="'Drosophila immigrans'"/>
-    </xsl:when>
-    <xsl:when test="matches($s,'d\.\p{Zs}?subobscura')">
-      <xsl:value-of select="'D. subobscura'"/>
-    </xsl:when>
-    <xsl:when test="matches($s,'drosophila\p{Zs}?subobscura')">
-      <xsl:value-of select="'Drosophila subobscura'"/>
-    </xsl:when>
-    <xsl:when test="matches($s,'d\.\p{Zs}?affinis')">
-      <xsl:value-of select="'D. affinis'"/>
-    </xsl:when>
-    <xsl:when test="matches($s,'drosophila\p{Zs}?affinis')">
-      <xsl:value-of select="'Drosophila affinis'"/>
-    </xsl:when>
-    <xsl:when test="matches($s,'d\.\p{Zs}?obscura')">
-      <xsl:value-of select="'D. obscura'"/>
-    </xsl:when>
-    <xsl:when test="matches($s,'drosophila\p{Zs}?obscura')">
-      <xsl:value-of select="'Drosophila obscura'"/>
-    </xsl:when>
-    <xsl:when test="matches($s,'f\.\p{Zs}?tularensis')">
-      <xsl:value-of select="'F. tularensis'"/>
-    </xsl:when>
-    <xsl:when test="matches($s,'francisella\p{Zs}?tularensis')">
-      <xsl:value-of select="'Francisella tularensis'"/>
-    </xsl:when>
-    <xsl:when test="matches($s,'p\.\p{Zs}?plantaginis')">
-      <xsl:value-of select="'P. plantaginis'"/>
-    </xsl:when>
-    <xsl:when test="matches($s,'podosphaera\p{Zs}?plantaginis')">
-      <xsl:value-of select="'Podosphaera plantaginis'"/>
-    </xsl:when>
-    <xsl:when test="matches($s,'p\.\p{Zs}?lanceolata')">
-      <xsl:value-of select="'P. lanceolata'"/>
-    </xsl:when>
-    <xsl:when test="matches($s,'plantago\p{Zs}?lanceolata')">
-      <xsl:value-of select="'Plantago lanceolata'"/>
-    </xsl:when>
-    <xsl:when test="matches($s,'m\.\p{Zs}?trossulus')">
-      <xsl:value-of select="'M. trossulus'"/>
-    </xsl:when>
-    <xsl:when test="matches($s,'mytilus\p{Zs}?trossulus')">
-      <xsl:value-of select="'Mytilus trossulus'"/>
-    </xsl:when>
-    <xsl:when test="matches($s,'m\.\p{Zs}?edulis')">
-      <xsl:value-of select="'M. edulis'"/>
-    </xsl:when>
-    <xsl:when test="matches($s,'mytilus\p{Zs}?edulis')">
-      <xsl:value-of select="'Mytilus edulis'"/>
-    </xsl:when>
-    <xsl:when test="matches($s,'m\.\p{Zs}?chilensis')">
-      <xsl:value-of select="'M. chilensis'"/>
-    </xsl:when>
-    <xsl:when test="matches($s,'mytilus\p{Zs}?chilensis')">
-      <xsl:value-of select="'Mytilus chilensis'"/>
-    </xsl:when>
-    <xsl:when test="matches($s,'u\.\p{Zs}?maydis')">
-      <xsl:value-of select="'U. maydis'"/>
-    </xsl:when>
-    <xsl:when test="matches($s,'ustilago\p{Zs}?maydis')">
-      <xsl:value-of select="'Ustilago maydis'"/>
-    </xsl:when>
-    <xsl:when test="matches($s,'p\.\p{Zs}?knowlesi')">
-      <xsl:value-of select="'P. knowlesi'"/>
-    </xsl:when>
-    <xsl:when test="matches($s,'plasmodium\p{Zs}?knowlesi')">
-      <xsl:value-of select="'Plasmodium knowlesi'"/>
-    </xsl:when>
-    <xsl:when test="matches($s,'p\.\p{Zs}?aeruginosa')">
-      <xsl:value-of select="'P. aeruginosa'"/>
-    </xsl:when>
-    <xsl:when test="matches($s,'pseudomonas\p{Zs}?aeruginosa')">
-      <xsl:value-of select="'Pseudomonas aeruginosa'"/>
-    </xsl:when>
-    <xsl:when test="matches($s,'t\.\p{Zs}?brucei')">
-      <xsl:value-of select="'T. brucei'"/>
-    </xsl:when>
-    <xsl:when test="matches($s,'trypanosoma\p{Zs}?brucei')">
-      <xsl:value-of select="'Trypanosoma brucei'"/>
-    </xsl:when>
-    <xsl:when test="matches($s,'caulobacter\p{Zs}?crescentus')">
-      <xsl:value-of select="'Caulobacter crescentus'"/>
-    </xsl:when>
-    <xsl:when test="matches($s,'c\.\p{Zs}?crescentus')">
-      <xsl:value-of select="'C. crescentus'"/>
-    </xsl:when>
-    <xsl:when test="matches($s,'agrobacterium\p{Zs}?tumefaciens')">
-      <xsl:value-of select="'Agrobacterium tumefaciens'"/>
-    </xsl:when>
-    <xsl:when test="matches($s,'a\.\p{Zs}?tumefaciens')">
-      <xsl:value-of select="'A. tumefaciens'"/>
-    </xsl:when>
-    <xsl:when test="matches($s,'t\.\p{Zs}?gondii')">
-      <xsl:value-of select="'T. gondii'"/>
-    </xsl:when>
-    <xsl:when test="matches($s,'toxoplasma\p{Zs}?gondii')">
-      <xsl:value-of select="'Toxoplasma gondii'"/>
-    </xsl:when>
-    <xsl:when test="matches($s,'d\.\p{Zs}?rerio')">
-      <xsl:value-of select="'D. rerio'"/>
-    </xsl:when>
-    <xsl:when test="matches($s,'danio\p{Zs}?rerio')">
-      <xsl:value-of select="'Danio rerio'"/>
-    </xsl:when>
-    <xsl:when test="matches($s,'drosophila')">
-      <xsl:value-of select="'Drosophila'"/>
-    </xsl:when>
-    <xsl:when test="matches($s,'yimenosaurus')">
-      <xsl:value-of select="'Yimenosaurus'"/>
-    </xsl:when>
-    <xsl:when test="matches($s,'lesothosaurus\p{Zs}?diagnosticus')">
-      <xsl:value-of select="'Lesothosaurus diagnosticus'"/>
-    </xsl:when>
-    <xsl:when test="matches($s,'l.\p{Zs}?diagnosticus')">
-      <xsl:value-of select="'L. diagnosticus'"/>
-    </xsl:when>
-    <xsl:when test="matches($s,'scelidosaurus\p{Zs}?harrisonii')">
-      <xsl:value-of select="'Scelidosaurus harrisonii'"/>
-    </xsl:when>
-    <xsl:when test="matches($s,'s.\p{Zs}?harrisonii')">
-      <xsl:value-of select="'S. harrisonii'"/>
-    </xsl:when>
-    <xsl:when test="matches($s,'haya\p{Zs}?griva')">
-      <xsl:value-of select="'Haya griva'"/>
-    </xsl:when>
-    <xsl:when test="matches($s,'h.\p{Zs}?griva')">
-      <xsl:value-of select="'H. griva'"/>
-    </xsl:when>
-    <xsl:when test="matches($s,'polacanthus\p{Zs}?foxii')">
-      <xsl:value-of select="'Polacanthus foxii'"/>
-    </xsl:when>
-    <xsl:when test="matches($s,'p.\p{Zs}?foxii')">
-      <xsl:value-of select="'P. foxii'"/>
-    </xsl:when>
-    <xsl:when test="matches($s,'scutellosaurus\p{Zs}?lawleri')">
-      <xsl:value-of select="'Scutellosaurus lawleri'"/>
-    </xsl:when>
-    <xsl:when test="matches($s,'s.\p{Zs}?lawleri')">
-      <xsl:value-of select="'S. lawleri'"/>
-    </xsl:when>
-    <xsl:when test="matches($s,'saichania\p{Zs}?chulsanensis')">
-      <xsl:value-of select="'Saichania chulsanensis'"/>
-    </xsl:when>
-    <xsl:when test="matches($s,'s.\p{Zs}?chulsanensis')">
-      <xsl:value-of select="'S. chulsanensis'"/>
-    </xsl:when>
-    <xsl:when test="matches($s,'gargoyleosaurus\p{Zs}?parkpinorum')">
-      <xsl:value-of select="'Gargoyleosaurus parkpinorum'"/>
-    </xsl:when>
-    <xsl:when test="matches($s,'g.\p{Zs}?parkpinorum')">
-      <xsl:value-of select="'G. parkpinorum'"/>
-    </xsl:when>
-    <xsl:when test="matches($s,'europelta\p{Zs}?carbonensis')">
-      <xsl:value-of select="'Europelta carbonensis'"/>
-    </xsl:when>
-    <xsl:when test="matches($s,'e.\p{Zs}?carbonensis')">
-      <xsl:value-of select="'E. carbonensis'"/>
-    </xsl:when>
-    <xsl:when test="matches($s,'stegosaurus\p{Zs}?stenops')">
-      <xsl:value-of select="'Stegosaurus stenops'"/>
-    </xsl:when>
-    <xsl:when test="matches($s,'s.\p{Zs}?stenops')">
-      <xsl:value-of select="'S. stenops'"/>
-    </xsl:when>
-    <xsl:when test="matches($s,'pinacosaurus\p{Zs}?grangeri')">
-      <xsl:value-of select="'Pinacosaurus grangeri'"/>
-    </xsl:when>
-    <xsl:when test="matches($s,'p.\p{Zs}?grangeri')">
-      <xsl:value-of select="'P. grangeri'"/>
-    </xsl:when>
-    <xsl:when test="matches($s,'tatisaurus\p{Zs}?oehleri')">
-      <xsl:value-of select="'Tatisaurus oehleri'"/>
-    </xsl:when>
-    <xsl:when test="matches($s,'t.\p{Zs}?oehleri')">
-      <xsl:value-of select="'T. oehleri'"/>
-    </xsl:when>
-    <xsl:when test="matches($s,'hungarosaurus\p{Zs}?tormai')">
-      <xsl:value-of select="'Hungarosaurus tormai'"/>
-    </xsl:when>
-    <xsl:when test="matches($s,'h.\p{Zs}?tormai')">
-      <xsl:value-of select="'H. tormai'"/>
-    </xsl:when>
-    <xsl:when test="matches($s,'lesothosaurus\p{Zs}?diagnosticus')">
-      <xsl:value-of select="'Lesothosaurus diagnosticus'"/>
-    </xsl:when>
-    <xsl:when test="matches($s,'l.\p{Zs}?diagnosticus')">
-      <xsl:value-of select="'L. diagnosticus'"/>
-    </xsl:when>
-    <xsl:when test="matches($s,'bienosaurus\p{Zs}?lufengensis')">
-      <xsl:value-of select="'Bienosaurus lufengensis'"/>
-    </xsl:when>
-    <xsl:when test="matches($s,'b.\p{Zs}?lufengensis')">
-      <xsl:value-of select="'B. lufengensis'"/>
-    </xsl:when>
-    <xsl:when test="matches($s,'fabrosaurus\p{Zs}?australis')">
-      <xsl:value-of select="'Fabrosaurus australis'"/>
-    </xsl:when>
-    <xsl:when test="matches($s,'f.\p{Zs}?australis')">
-      <xsl:value-of select="'F. australis'"/>
-    </xsl:when>
-    <xsl:when test="matches($s,'chinshakiangosaurus\p{Zs}?chunghoensis')">
-      <xsl:value-of select="'Chinshakiangosaurus chunghoensis'"/>
-    </xsl:when>
-    <xsl:when test="matches($s,'c.\p{Zs}?chunghoensis')">
-      <xsl:value-of select="'C. chunghoensis'"/>
-    </xsl:when>
-    <xsl:when test="matches($s,'euoplocephalus\p{Zs}?tutus')">
-      <xsl:value-of select="'Euoplocephalus tutus'"/>
-    </xsl:when>
-    <xsl:when test="matches($s,'e.\p{Zs}?tutus')">
-      <xsl:value-of select="'E. tutus'"/>
-    </xsl:when>
-    <xsl:when test="matches($s,'g\.\p{Zs}?beringei')">
-      <xsl:value-of select="'G. beringei'"/>
-    </xsl:when>
-    <xsl:when test="matches($s,'gorilla\p{Zs}?beringei')">
-      <xsl:value-of select="'Gorilla beringei'"/>
-    </xsl:when>
-    <xsl:when test="matches($s,'m\.\p{Zs}?assamensis')">
-      <xsl:value-of select="'M. assamensis'"/>
-    </xsl:when>
-    <xsl:when test="matches($s,'macaca\p{Zs}?assamensis')">
-      <xsl:value-of select="'Macaca assamensis'"/>
-    </xsl:when>
-    <xsl:when test="matches($s,'m\.\p{Zs}?fuscata')">
-      <xsl:value-of select="'M. fuscata'"/>
-    </xsl:when>
-    <xsl:when test="matches($s,'macaca\p{Zs}?fuscata')">
-      <xsl:value-of select="'Macaca fuscata'"/>
-    </xsl:when>
-    <xsl:when test="matches($s,'m\.\p{Zs}?mulatta')">
-      <xsl:value-of select="'M. mulatta'"/>
-    </xsl:when>
-    <xsl:when test="matches($s,'macaca\p{Zs}?mulatta')">
-      <xsl:value-of select="'Macaca mulatta'"/>
-    </xsl:when>
-    <xsl:when test="matches($s,'m\.\p{Zs}?nemestrina')">
-      <xsl:value-of select="'M. nemestrina'"/>
-    </xsl:when>
-    <xsl:when test="matches($s,'macaca\p{Zs}?nemestrina')">
-      <xsl:value-of select="'Macaca nemestrina'"/>
-    </xsl:when>
-    <xsl:when test="matches($s,'m\.\p{Zs}?sphinx')">
-      <xsl:value-of select="'M. sphinx'"/>
-    </xsl:when>
-    <xsl:when test="matches($s,'mandrillus\p{Zs}?sphinx')">
-      <xsl:value-of select="'Mandrillus sphinx'"/>
-    </xsl:when>
-    <xsl:when test="matches($s,'p\.\p{Zs}?anubis')">
-      <xsl:value-of select="'P. anubis'"/>
-    </xsl:when>
-    <xsl:when test="matches($s,'papio\p{Zs}?anubis')">
-      <xsl:value-of select="'Papio anubis'"/>
-    </xsl:when>
-    <xsl:when test="matches($s,'p\.\p{Zs}?hamadryas')">
-      <xsl:value-of select="'P. hamadryas'"/>
-    </xsl:when>
-    <xsl:when test="matches($s,'papio\p{Zs}?hamadryas')">
-      <xsl:value-of select="'Papio hamadryas'"/>
-    </xsl:when>
-    <xsl:when test="matches($s,'p\.\p{Zs}?paniscus')">
-      <xsl:value-of select="'P. paniscus'"/>
-    </xsl:when>
-    <xsl:when test="matches($s,'pan\p{Zs}?paniscus')">
-      <xsl:value-of select="'Pan paniscus'"/>
-    </xsl:when>
-    <xsl:when test="matches($s,'p\.\p{Zs}?troglodytes')">
-      <xsl:value-of select="'P. troglodytes'"/>
-    </xsl:when>
-    <xsl:when test="matches($s,'pan\p{Zs}?troglodytes')">
-      <xsl:value-of select="'Pan troglodytes'"/>
-    </xsl:when>
-    <xsl:when test="matches($s,'xenopus')">
-      <xsl:value-of select="'Xenopus'"/>
-    </xsl:when>
-    <xsl:when test="matches($s,'salmonella')">
-      <xsl:value-of select="'Salmonella'"/>
-    </xsl:when>
-    <xsl:otherwise>
-      <xsl:value-of select="'undefined'"/>
-    </xsl:otherwise>
-  </xsl:choose>
-</xsl:function>
-  <xsl:function name="e:code-check">
-    <xsl:param name="s" as="xs:string"/>
-    <xsl:element name="code">
-      <xsl:if test="contains($s,'github')">
-        <xsl:element name="match">
-        <xsl:value-of select="'github '"/>
-        </xsl:element>
-      </xsl:if>
-      <xsl:if test="contains($s,'gitlab')">
-        <xsl:element name="match">
-        <xsl:value-of select="'gitlab '"/>
-        </xsl:element>
-      </xsl:if>
-      <xsl:if test="contains($s,'git.exeter.ac.uk')">
-        <xsl:element name="match">
-          <xsl:value-of select="'git.exeter.ac.uk '"/>
-        </xsl:element>
-      </xsl:if>
-      <xsl:if test="contains($s,'codeplex')">
-        <xsl:element name="match">
-        <xsl:value-of select="'codeplex '"/>
-        </xsl:element>
-      </xsl:if>
-      <xsl:if test="contains($s,'sourceforge')">
-        <xsl:element name="match">
-        <xsl:value-of select="'sourceforge '"/>
-        </xsl:element>
-      </xsl:if>
-      <xsl:if test="contains($s,'bitbucket')">
-        <xsl:element name="match">
-        <xsl:value-of select="'bitbucket '"/>
-        </xsl:element>
-      </xsl:if>
-      <xsl:if test="contains($s,'assembla ')">
-        <xsl:element name="match">
-        <xsl:value-of select="'assembla '"/>
-        </xsl:element>
-      </xsl:if>
-    </xsl:element>
-  </xsl:function>
-  <xsl:function name="e:get-xrefs">
-    <xsl:param name="article"/>
-    <xsl:param name="object-id"/>
-    <xsl:param name="object-type"/>
-    <xsl:variable name="object-no" select="replace($object-id,'[^0-9]','')"/>
-    <xsl:element name="matches">
-      <xsl:for-each select="$article//xref[(@ref-type=$object-type) and not(ancestor::caption)]">
-        <xsl:variable name="rid-no" select="replace(./@rid,'[^0-9]','')"/>
-        <xsl:variable name="text-no" select="tokenize(normalize-space(replace(.,'[^0-9]',' ')),'\p{Zs}')[last()]"/>
-        <xsl:choose>
-          <xsl:when test="./@rid = $object-id">
-            <xsl:element name="match">
-              <xsl:attribute name="sec-id">
-                <xsl:value-of select="./ancestor::sec[1]/@id"/>
-              </xsl:attribute>
-              <xsl:value-of select="self::*"/>
-            </xsl:element>
-          </xsl:when>
-          <xsl:when test="contains(./@rid,'app')"/>
-          <xsl:when test="($rid-no lt $object-no) and (./following-sibling::text()[1] = '–') and (./following-sibling::*[1]/name()='xref') and (number(replace(replace(./following-sibling::xref[1]/@rid,'\-','.'),'[a-z]','')) gt number($object-no))">
-            <xsl:element name="match">
-              <xsl:attribute name="sec-id">
-                <xsl:value-of select="./ancestor::sec[1]/@id"/>
-              </xsl:attribute>
-              <xsl:value-of select="self::*"/>
-            </xsl:element>
-          </xsl:when>
-          <xsl:when test="($rid-no lt $object-no) and contains(.,$object-no) and (contains(.,'Videos') or contains(.,'videos') and contains(.,'–'))">
-            <xsl:element name="match">
-              <xsl:attribute name="sec-id">
-                <xsl:value-of select="./ancestor::sec[1]/@id"/>
-              </xsl:attribute>
-              <xsl:value-of select="self::*"/>
-            </xsl:element>
-          </xsl:when>
-          <xsl:when test="($rid-no lt $object-no) and (contains(.,'Videos') or contains(.,'videos') and contains(.,'—')) and ($text-no gt $object-no)">
-            <xsl:element name="match">
-              <xsl:attribute name="sec-id">
-                <xsl:value-of select="./ancestor::sec[1]/@id"/>
-              </xsl:attribute>
-              <xsl:value-of select="self::*"/>
-            </xsl:element>
-          </xsl:when>
-          <xsl:otherwise/>
-        </xsl:choose>
-      </xsl:for-each>
-    </xsl:element>
-  </xsl:function>
-  <xsl:function name="e:get-iso-pub-date">
-    <xsl:param name="element"/>
-    <xsl:choose>
-      <xsl:when test="$element/ancestor-or-self::article//article-meta/pub-date[(@date-type='publication') or (@date-type='pub')]/month">
-        <xsl:variable name="pub-date" select="$element/ancestor-or-self::article//article-meta/pub-date[(@date-type='publication') or (@date-type='pub')]"/>
-        <xsl:value-of select="concat($pub-date/year,'-',$pub-date/month,'-',$pub-date/day)"/>
-      </xsl:when>
-      <xsl:otherwise/>
-    </xsl:choose>
-  </xsl:function>
-  <xsl:function name="e:get-copyright-holder">
-    <xsl:param name="contrib-group"/>
-    <xsl:variable name="author-count" select="count($contrib-group/contrib[@contrib-type='author'])"/>
-    <xsl:choose>
-      <xsl:when test="$author-count lt 1"/>
-      <xsl:when test="$author-count = 1">
-        <xsl:choose>
-          <xsl:when test="$contrib-group/contrib[@contrib-type='author']/collab">
-            <xsl:value-of select="$contrib-group/contrib[@contrib-type='author']/collab[1]/text()[1]"/>
-          </xsl:when>
-          <xsl:otherwise>
-            <xsl:value-of select="$contrib-group/contrib[@contrib-type='author']/name[1]/surname[1]"/>
-          </xsl:otherwise>
-        </xsl:choose>
-      </xsl:when>
-      <xsl:when test="$author-count = 2">
-        <xsl:choose>
-          <xsl:when test="$contrib-group/contrib[@contrib-type='author']/collab">
-            <xsl:choose>
-              <xsl:when test="$contrib-group/contrib[@contrib-type='author'][1]/collab and $contrib-group/contrib[@contrib-type='author'][2]/collab">
-                <xsl:value-of select="concat($contrib-group/contrib[@contrib-type='author']/collab[1]/text()[1],' and ',$contrib-group/contrib[@contrib-type='author']/collab[2]/text()[1])"/>
-              </xsl:when>
-              <xsl:when test="$contrib-group/contrib[@contrib-type='author'][1]/collab">
-                <xsl:value-of select="concat($contrib-group/contrib[@contrib-type='author'][1]/collab[1]/text()[1],' and ',$contrib-group/contrib[@contrib-type='author'][2]/name[1]/surname[1])"/>
-              </xsl:when>
-              <xsl:otherwise>
-                <xsl:value-of select="concat($contrib-group/contrib[@contrib-type='author'][1]/name[1]/surname[1],' and ',$contrib-group/contrib[@contrib-type='author'][2]/collab[1]/text()[1])"/>
-              </xsl:otherwise>
-            </xsl:choose>
-          </xsl:when>
-          <xsl:otherwise>
-            <xsl:value-of select="concat($contrib-group/contrib[@contrib-type='author'][1]/name[1]/surname[1],' and ',$contrib-group/contrib[@contrib-type='author'][2]/name[1]/surname[1])"/>
-          </xsl:otherwise>
-        </xsl:choose>
-      </xsl:when>
-      
-      <xsl:otherwise>
-        <xsl:variable name="is-equal-contrib" select="if ($contrib-group/contrib[@contrib-type='author'][1]/@equal-contrib='yes') then true() else false()"/>
-        <xsl:choose>
-          <xsl:when test="$is-equal-contrib">
-            
-            <xsl:variable name="equal-contrib-rid" select="$contrib-group/contrib[@contrib-type='author'][1]/xref[starts-with(@rid,'equal-contrib')]/@rid"/>
-            <xsl:variable name="first-authors" select="$contrib-group/contrib[@contrib-type='author' and @equal-contrib='yes' and xref[@rid=$equal-contrib-rid] and not(preceding-sibling::contrib[not(xref[@rid=$equal-contrib-rid])])]"/>
-            <xsl:choose>
-              
-              <xsl:when test="$author-count = 3 and count($first-authors) = 3">
-                <xsl:value-of select="concat(e:get-surname($contrib-group/contrib[@contrib-type='author'][1]),                   ', ',                   e:get-surname($contrib-group/contrib[@contrib-type='author'][2]),                   ' and ',                   e:get-surname($contrib-group/contrib[@contrib-type='author'][3]))"/>
-              </xsl:when>
-              
-              <xsl:when test="count($first-authors) gt 3">
-                <xsl:variable name="first-auth-string" select="string-join(for $auth in $contrib-group/contrib[@contrib-type='author'][position() lt 4] return e:get-surname($auth),', ')"/>
-                <xsl:value-of select="concat($first-auth-string,' et al')"/>
-              </xsl:when>
-              
-              <xsl:otherwise>
-                <xsl:variable name="first-auth-string" select="string-join(for $auth in $first-authors return e:get-surname($auth),', ')"/>
-                <xsl:value-of select="concat($first-auth-string,' et al')"/>
-              </xsl:otherwise>
-            </xsl:choose>
-          </xsl:when>
-          
-          <xsl:otherwise>
-            <xsl:value-of select="concat(e:get-surname($contrib-group/contrib[@contrib-type='author'][1]),' et al')"/>
-          </xsl:otherwise>
-        </xsl:choose>
-      </xsl:otherwise>
-    </xsl:choose>
-  </xsl:function>
-  <xsl:function name="e:get-surname" as="text()">
-    <xsl:param name="contrib"/>
-    <xsl:choose>
-      <xsl:when test="$contrib/collab">
-        <xsl:value-of select="$contrib/collab[1]/text()[1]"/>
-      </xsl:when>
-      <xsl:otherwise>
-        <xsl:value-of select="$contrib//name[1]/surname[1]"/>
-      </xsl:otherwise>
-    </xsl:choose>
-  </xsl:function>
-  <xsl:function name="e:insight-box" as="element()">
-    <xsl:param name="box" as="xs:string"/>
-    <xsl:param name="cite-text" as="xs:string"/>
-    <xsl:variable name="box-text" select="substring-after(substring-after($box,'article'),' ')"/> 
-    
-    <xsl:element name="list">
-      <xsl:for-each select="tokenize($cite-text,'\p{Zs}')">
-        <xsl:choose>
-          <xsl:when test="contains($box-text,.)"/>
-          <xsl:otherwise>
-            <xsl:element name="item">
-              <xsl:attribute name="type">cite</xsl:attribute>
-              <xsl:value-of select="."/>
-            </xsl:element>
-          </xsl:otherwise>
-        </xsl:choose>
-      </xsl:for-each>
-      <xsl:for-each select="tokenize($box-text,'\p{Zs}')">
-        <xsl:choose>
-          <xsl:when test="contains($cite-text,.)"/>
-          <xsl:otherwise>
-            <xsl:element name="item">
-              <xsl:attribute name="type">box</xsl:attribute>
-              <xsl:value-of select="."/>
-            </xsl:element>
-          </xsl:otherwise>
-        </xsl:choose>
-      </xsl:for-each>
-    </xsl:element>
-  </xsl:function>
-  <let name="latin-regex" value="'in\p{Zs}+vitro|ex\p{Zs}+vitro|in\p{Zs}+vivo|ex\p{Zs}+vivo|a\p{Zs}+priori|a\p{Zs}+posteriori|de\p{Zs}+novo|in\p{Zs}+utero|in\p{Zs}+natura|in\p{Zs}+situ|in\p{Zs}+planta|in\p{Zs}+cellulo|rete\p{Zs}+mirabile|nomen\p{Zs}+novum| sensu |ad\p{Zs}+libitum|in\p{Zs}+ovo'"/>
-  <xsl:function name="e:get-latin-terms" as="element()">
-    <xsl:param name="article" as="element()"/>
-    <xsl:param name="regex" as="xs:string"/>
-    
-    <xsl:variable name="roman-text" select="lower-case(       string-join(for $x in $article/*[local-name() = 'body' or local-name() = 'back']//*       return       if ($x/ancestor-or-self::sec[@sec-type='additional-information']) then ()       else if ($x/ancestor-or-self::ref-list) then ()       else if ($x/local-name() = 'italic') then ()       else $x/text(),' '))"/>
-    <xsl:variable name="italic-text" select="lower-case(string-join($article//*:italic[not(ancestor::ref-list) and not(ancestor::sec[@sec-type='additional-information'])],' '))"/>
-    
-    
-    <xsl:element name="result">
-      <xsl:choose>
-        <xsl:when test="matches($roman-text,$regex)">
-          <xsl:element name="list">
-            <xsl:attribute name="list-type">roman</xsl:attribute>
-            <xsl:for-each select="tokenize($regex,'\|')">
-              <xsl:variable name="display" select="replace(replace(.,'\\p\{Zs\}\+',' '),'^ | $','')"/>
-              <xsl:element name="match">
-                <xsl:attribute name="count">
-                  <xsl:value-of select="count(tokenize($roman-text,.)) - 1"/>
-                </xsl:attribute>
-                <xsl:value-of select="$display"/>
-              </xsl:element>
-            </xsl:for-each>
-          </xsl:element>
-        </xsl:when>
-        <xsl:otherwise>
-          <xsl:element name="list">
-            <xsl:attribute name="list-type">roman</xsl:attribute>
-          </xsl:element>
-        </xsl:otherwise>
-      </xsl:choose>
-      <xsl:choose>
-        <xsl:when test="matches($italic-text,$regex)">
-          <xsl:element name="list">
-            <xsl:attribute name="list-type">italic</xsl:attribute>
-            <xsl:for-each select="tokenize($regex,'\|')">
-              <xsl:variable name="display" select="replace(.,'\\p\{Zs\}\+',' ')"/>
-              <xsl:element name="match">
-                <xsl:attribute name="count">
-                  <xsl:value-of select="count(tokenize($italic-text,.)) - 1"/>
-                </xsl:attribute>
-                <xsl:value-of select="$display"/>
-              </xsl:element>
-            </xsl:for-each>
-          </xsl:element>
-        </xsl:when>
-        <xsl:otherwise>
-          <xsl:element name="list">
-            <xsl:attribute name="list-type">italic</xsl:attribute>
-          </xsl:element>
-        </xsl:otherwise>
-      </xsl:choose>
-    </xsl:element>
-  </xsl:function>
-  <xsl:function name="e:print-latin-terms" as="xs:string">
-    <xsl:param name="list" as="element()"/>
-    <xsl:value-of select="string-join(       for $term in $list//*:match[@count != '0']        return if (number($term/@count) gt 1) then concat($term/@count,' instances of ',$term)       else concat($term/@count,' instance of ',$term)       ,', ')"/>
-  </xsl:function>
-  <xsl:function name="e:list-panels">
-    <xsl:param name="caption" as="xs:string"/>
-    <xsl:element name="list">
-      <xsl:for-each select="tokenize($caption,'\.\p{Zs}+')">
-        <xsl:if test="matches(.,'^[B-K]\p{P}?[A-K]?\.?\p{Zs}+')">
-          <xsl:element name="item">
-            <xsl:attribute name="token">
-              <xsl:value-of select="substring-before(.,' ')"/>
-            </xsl:attribute>
-            <xsl:value-of select="."/>
-          </xsl:element>
-        </xsl:if>
-      </xsl:for-each>
-    </xsl:element>
-  </xsl:function>
-  <xsl:function name="e:get-weekday" as="xs:integer?">
-    <xsl:param name="date" as="xs:anyAtomicType?"/>
-    <xsl:sequence select="       if (empty($date)) then ()       else xs:integer((xs:date($date) - xs:date('1901-01-06')) div xs:dayTimeDuration('P1D')) mod 7       "/>
-  </xsl:function>
-  <xsl:function name="e:line-count" as="xs:integer">
-    <xsl:param name="arg" as="xs:string?"/>
-    
-    <xsl:sequence select="count(tokenize($arg,'(\r\n?|\n\r?)'))"/>
-    
-  </xsl:function>
-  <pattern id="article-metadata">
-    <rule context="funding-group/award-group[funding-source/institution-wrap/institution-id]" id="grant-doi-tests">
-      <let name="award-id" value="award-id"/>
-      <let name="funder-id" value="funding-source/institution-wrap/institution-id"/>
-      <let name="funder-entry" value="document($funders)//funder[@fundref=$funder-id]"/>
-      <let name="mints-grant-dois" value="$funder-entry/@grant-dois='yes'"/>
-      <let name="grant-matches" value="if (not($mints-grant-dois)) then ()         else $funder-entry//*:grant[@award=$award-id]"/>
-      <report test="$grant-matches" role="warning" id="grant-doi-test-1">Funding entry from <value-of select="funding-source/institution-wrap/institution"/> has an award-id (<value-of select="$award-id"/>) which could be replaced with a grant DOI. The following grant DOIs are possibilities: <value-of select="string-join(for $grant in $grant-matches return concat('https://doi.org/',$grant/@doi),'; ')"/>.</report>
-    </rule>
-  </pattern>
-  <pattern id="root-pattern">
-    <rule context="root" id="root-rule">
-      <assert test="descendant::funding-group/award-group[funding-source/institution-wrap/institution-id]" role="error" id="grant-doi-tests-xspec-assert">funding-group/award-group[funding-source/institution-wrap/institution-id] must be present.</assert>
-    </rule>
-  </pattern>
-</schema>
\ No newline at end of file
diff --git a/test/tests/gen/grant-doi-tests/grant-doi-test-1/pass.xml b/test/tests/gen/grant-doi-tests/grant-doi-test-1/pass.xml
deleted file mode 100644
index 2ec0415444..0000000000
--- a/test/tests/gen/grant-doi-tests/grant-doi-test-1/pass.xml
+++ /dev/null
@@ -1,25 +0,0 @@
-<?oxygen SCHSchema="grant-doi-test-1.sch"?>
-<!--Context: funding-group/award-group[funding-source/institution-wrap/institution-id]
-Test: report    $grant-matches
-Message: Funding entry from  has an award-id () which could be replaced with a grant DOI. The following grant DOIs are possibilities: . -->
-<root xmlns:xlink="http://www.w3.org/1999/xlink" xmlns:mml="http://www.w3.org/1998/Math/MathML" xmlns:ali="http://www.niso.org/schemas/ali/1.0/">
-  <article>
-    <funding-group>
-      <award-group id="fund1">
-        <funding-source>
-          <institution-wrap>
-            <institution-id institution-id-type="FundRef">http://dx.doi.org/10.13039/501100001659</institution-id>
-            <institution>Deutsche Forschungsgemeinschaft</institution>
-          </institution-wrap>
-        </funding-source>
-        <award-id>grant ID</award-id>
-        <principal-award-recipient>
-          <name>
-            <surname>Claus</surname>
-            <given-names>Santa</given-names>
-          </name>
-        </principal-award-recipient>
-      </award-group>
-    </funding-group>
-  </article>
-</root>
\ No newline at end of file
diff --git a/test/tests/gen/math-mi-tests/math-mi-empty-test/fail.xml b/test/tests/gen/math-mi-tests/math-mi-empty-test/fail.xml
deleted file mode 100644
index abf737e402..0000000000
--- a/test/tests/gen/math-mi-tests/math-mi-empty-test/fail.xml
+++ /dev/null
@@ -1,9 +0,0 @@
-<?oxygen SCHSchema="math-mi-empty-test.sch"?>
-<!--Context: mml:mi
-Test: report    not(*) and normalize-space(.)=''
-Message:  element is completely empty. This is not allowed. -->
-<root xmlns:ali="http://www.niso.org/schemas/ali/1.0/" xmlns:mml="http://www.w3.org/1998/Math/MathML" xmlns:xlink="http://www.w3.org/1999/xlink">
-    <article>
-        <inline-formula><mml:math id="inf1"><mml:mstyle displaystyle="true" scriptlevel="0"><mml:mrow class="MJX-TeXAtom-ORD"><mml:mover><mml:mi/><mml:mo stretchy="false">¯</mml:mo></mml:mover></mml:mrow></mml:mstyle></mml:math></inline-formula>
-    </article>
-</root>
\ No newline at end of file
diff --git a/test/tests/gen/math-mi-tests/math-mi-empty-test/math-mi-empty-test.sch b/test/tests/gen/math-mi-tests/math-mi-empty-test/math-mi-empty-test.sch
deleted file mode 100644
index 5fcbf2846f..0000000000
--- a/test/tests/gen/math-mi-tests/math-mi-empty-test/math-mi-empty-test.sch
+++ /dev/null
@@ -1,1303 +0,0 @@
-<schema xmlns="http://purl.oclc.org/dsdl/schematron" xmlns:xlink="http://www.w3.org/1999/xlink" xmlns:xsl="http://www.w3.org/1999/XSL/Transform" xmlns:java="http://www.java.com/" xmlns:file="java.io.File" xmlns:ali="http://www.niso.org/schemas/ali/1.0/" xmlns:mml="http://www.w3.org/1998/Math/MathML" queryBinding="xslt2">
-  <title>eLife Schematron</title>
-  <ns uri="http://www.niso.org/schemas/ali/1.0/" prefix="ali"/>
-  <ns uri="http://www.w3.org/XML/1998/namespace" prefix="xml"/>
-  <ns uri="http://www.w3.org/1999/xlink" prefix="xlink"/>
-  <ns uri="http://www.w3.org/2001/XInclude" prefix="xi"/>
-  <ns uri="http://www.w3.org/1998/Math/MathML" prefix="mml"/>
-  <ns uri="http://saxon.sf.net/" prefix="saxon"/>
-  <ns uri="http://purl.org/dc/terms/" prefix="dc"/>
-  <ns uri="http://www.w3.org/2001/XMLSchema" prefix="xs"/>
-  <ns uri="https://elifesciences.org/namespace" prefix="e"/>
-  <ns uri="java.io.File" prefix="file"/>
-  <ns uri="http://www.java.com/" prefix="java"/>
-  <let name="features-subj" value="('Feature Article', 'Insight', 'Editorial')"/>
-  <let name="features-article-types" value="('article-commentary','editorial','discussion')"/>
-  <let name="research-subj" value="('Research Article', 'Short Report', 'Tools and Resources', 'Research Advance', 'Registered Report', 'Replication Study', 'Research Communication', 'Correction', 'Retraction', 'Scientific Correspondence', 'Review Article')"/>
-  <let name="notice-article-types" value="('correction','retraction','expression-of-concern')"/>
-  <let name="notice-display-types" value="('Correction','Retraction','Expression of Concern')"/>
-  <let name="allowed-article-types" value="('research-article','review-article',$features-article-types, $notice-article-types)"/>
-  <let name="allowed-disp-subj" value="($research-subj, $features-subj)"/>
-  <let name="MSAs" value="('Biochemistry and Chemical Biology', 'Cancer Biology', 'Cell Biology', 'Chromosomes and Gene Expression', 'Computational and Systems Biology', 'Developmental Biology', 'Ecology', 'Epidemiology and Global Health', 'Evolutionary Biology', 'Genetics and Genomics', 'Medicine', 'Immunology and Inflammation', 'Microbiology and Infectious Disease', 'Neuroscience', 'Physics of Living Systems', 'Plant Biology', 'Stem Cells and Regenerative Medicine', 'Structural Biology and Molecular Biophysics')"/>
-  <let name="funders" value="'../../../../../src/funders.xml'"/>
-  <let name="wellcome-fundref-ids" value="('http://dx.doi.org/10.13039/100010269','http://dx.doi.org/10.13039/100004440')"/>
-  <xsl:function name="e:is-prc" as="xs:boolean">
-    <xsl:param name="elem" as="node()"/>
-    <xsl:choose>
-      <xsl:when test="$elem/name()='article'">
-        <xsl:value-of select="e:is-prc-helper($elem)"/>
-      </xsl:when>
-      <xsl:otherwise>
-        <xsl:value-of select="e:is-prc-helper($elem/ancestor::article[1])"/>
-      </xsl:otherwise>
-    </xsl:choose>
-  </xsl:function>
-  <xsl:function name="e:is-prc-helper" as="xs:boolean">
-    <xsl:param name="article" as="node()"/>
-    <xsl:choose>
-      <xsl:when test="$article//article-meta/custom-meta-group/custom-meta[meta-name='publishing-route']/meta-value='prc'">
-        <xsl:value-of select="true()"/>
-      </xsl:when>
-      <xsl:otherwise>
-        <xsl:value-of select="false()"/>
-      </xsl:otherwise>
-    </xsl:choose>
-  </xsl:function>
-  <xsl:function name="e:get-version" as="xs:string">
-    <xsl:param name="elem" as="node()"/>
-    <xsl:choose>
-      <xsl:when test="$elem/name()='article'">
-        <xsl:value-of select="e:get-version-helper($elem)"/>
-      </xsl:when>
-      <xsl:otherwise>
-        <xsl:value-of select="e:get-version-helper($elem/ancestor::article[1])"/>
-      </xsl:otherwise>
-    </xsl:choose>
-  </xsl:function>
-  <xsl:function name="e:get-version-helper" as="xs:string">
-    <xsl:param name="article" as="node()"/>
-    <xsl:choose>
-      <xsl:when test="$article//article-meta/custom-meta-group/custom-meta[meta-name='schema-version']/meta-value">
-        <xsl:value-of select="$article//article-meta/custom-meta-group/custom-meta[meta-name='schema-version']/meta-value"/>
-      </xsl:when>
-      <xsl:otherwise>
-        <xsl:value-of select="'1'"/>
-      </xsl:otherwise>
-    </xsl:choose>
-  </xsl:function>
-  <xsl:function name="e:titleCaseToken" as="xs:string">
-    <xsl:param name="s" as="xs:string"/>
-    <xsl:choose>
-      <xsl:when test="contains($s,'-')">
-        <xsl:value-of select="concat(           upper-case(substring(substring-before($s,'-'), 1, 1)),           lower-case(substring(substring-before($s,'-'),2)),           '-',           upper-case(substring(substring-after($s,'-'), 1, 1)),           lower-case(substring(substring-after($s,'-'),2)))"/>
-      </xsl:when>
-      <xsl:when test="lower-case($s)='elife'">
-        <xsl:value-of select="'eLife'"/>
-      </xsl:when>
-      <xsl:when test="lower-case($s)=('and','or','the','an','of','in','as','at','by','for','a','to','up','but','yet')">
-        <xsl:value-of select="lower-case($s)"/>
-      </xsl:when>
-      <xsl:when test="matches(lower-case($s),'^rna$|^dna$|^mri$|^hiv$|^tor$|^aids$|^covid-19$|^covid$')">
-        <xsl:value-of select="upper-case($s)"/>
-      </xsl:when>
-      <xsl:when test="matches(lower-case($s),'[1-4]d')">
-        <xsl:value-of select="upper-case($s)"/>
-      </xsl:when>
-      <xsl:otherwise>
-        <xsl:value-of select="concat(upper-case(substring($s, 1, 1)), lower-case(substring($s, 2)))"/>
-      </xsl:otherwise>
-    </xsl:choose>
-  </xsl:function>
-  <xsl:function name="e:titleCase" as="xs:string">
-    <xsl:param name="s" as="xs:string"/>
-    <xsl:choose>
-      
-      <xsl:when test="lower-case($s)='protein kinase a'">
-        <xsl:value-of select="'Protein Kinase A'"/>
-      </xsl:when>
-      <xsl:when test="contains($s,' ')">
-        <xsl:variable name="token1" select="substring-before($s,' ')"/>
-        <xsl:variable name="token2" select="substring-after($s,$token1)"/>
-        <xsl:choose>
-          <xsl:when test="lower-case($token1)='elife'">
-            <xsl:value-of select="concat('eLife',               ' ',               string-join(for $x in tokenize(substring-after($token2,' '),'\p{Zs}') return e:titleCaseToken($x),' ')               )"/>
-          </xsl:when>
-          <xsl:when test="matches(lower-case($token1),'^rna$|^dna$|^mri$|^hiv$|^tor$|^aids$|^covid-19$|^covid$')">
-            <xsl:value-of select="concat(upper-case($token1),               ' ',               string-join(for $x in tokenize(substring-after($token2,' '),'\p{Zs}') return e:titleCaseToken($x),' ')               )"/>
-          </xsl:when>
-          <xsl:when test="matches(lower-case($token1),'[1-4]d')">
-            <xsl:value-of select="concat(upper-case($token1),               ' ',               string-join(for $x in tokenize(substring-after($token2,' '),'\p{Zs}') return e:titleCaseToken($x),' ')               )"/>
-          </xsl:when>
-          <xsl:when test="contains($token1,'-')">
-            <xsl:value-of select="string-join(for $x in tokenize($s,'\p{Zs}') return e:titleCaseToken($x),' ')"/>
-          </xsl:when>
-          <xsl:otherwise>
-            <xsl:value-of select="concat(               concat(upper-case(substring($token1, 1, 1)), lower-case(substring($token1, 2))),               ' ',               string-join(for $x in tokenize(substring-after($token2,' '),'\p{Zs}') return e:titleCaseToken($x),' ')               )"/>
-          </xsl:otherwise>
-        </xsl:choose>
-      </xsl:when>
-      <xsl:when test="lower-case($s)='elife'">
-        <xsl:value-of select="'eLife'"/>
-      </xsl:when>
-      <xsl:when test="lower-case($s)=('and','or','the','an','of')">
-        <xsl:value-of select="lower-case($s)"/>
-      </xsl:when>
-      <xsl:when test="matches(lower-case($s),'^rna$|^dna$|^mri$|^hiv$|^tor$|^aids$|^covid-19$|^covid$')">
-        <xsl:value-of select="upper-case($s)"/>
-      </xsl:when>
-      <xsl:when test="matches(lower-case($s),'[1-4]d')">
-        <xsl:value-of select="upper-case($s)"/>
-      </xsl:when>
-      <xsl:otherwise>
-        <xsl:value-of select="e:titleCaseToken($s)"/>
-      </xsl:otherwise>
-    </xsl:choose>
-  </xsl:function>
-  <xsl:function name="e:article-type2title" as="xs:string">
-    <xsl:param name="s" as="xs:string"/>
-    <xsl:choose>
-      <xsl:when test="$s = 'Replication Study'">
-        <xsl:value-of select="'Replication Study:'"/>
-      </xsl:when>
-      <xsl:when test="$s = 'Registered Report'">
-        <xsl:value-of select="'Registered report:'"/>
-      </xsl:when>
-      <xsl:when test="$s = 'Correction'">
-        <xsl:value-of select="'Correction:'"/>
-      </xsl:when>
-      <xsl:when test="$s = 'Retraction'">
-        <xsl:value-of select="'Retraction:'"/>
-      </xsl:when>
-      <xsl:when test="$s = 'Expression of Concern'">
-        <xsl:value-of select="'Expression of Concern:'"/>
-      </xsl:when>
-      <xsl:otherwise>
-        <xsl:value-of select="'undefined'"/>
-      </xsl:otherwise>
-    </xsl:choose>
-  </xsl:function>
-  <xsl:function name="e:sec-type2title" as="xs:string">
-    <xsl:param name="s" as="xs:string"/>
-    <xsl:choose>
-      <xsl:when test="$s = 'intro'">
-        <xsl:value-of select="'Introduction'"/>
-      </xsl:when>
-      <xsl:when test="$s = 'results'">
-        <xsl:value-of select="'Results'"/>
-      </xsl:when>
-      <xsl:when test="$s = 'discussion'">
-        <xsl:value-of select="'Discussion'"/>
-      </xsl:when>
-      <xsl:when test="$s = 'materials|methods'">
-        <xsl:value-of select="'Materials and methods'"/>
-      </xsl:when>
-      <xsl:when test="$s = 'results|discussion'">
-        <xsl:value-of select="'Results and discussion'"/>
-      </xsl:when>
-      <xsl:when test="$s = 'methods'">
-        <xsl:value-of select="'Methods'"/>
-      </xsl:when>
-      <xsl:when test="$s = 'model'">
-        <xsl:value-of select="'Model'"/>
-      </xsl:when>
-      <xsl:when test="$s = 'additional-information'">
-        <xsl:value-of select="'Additional information'"/>
-      </xsl:when>
-      <xsl:when test="$s = 'supplementary-material'">
-        <xsl:value-of select="'Additional files'"/>
-      </xsl:when>
-      <xsl:when test="$s = 'data-availability'">
-        <xsl:value-of select="'Data availability'"/>
-      </xsl:when>
-      <xsl:otherwise>
-        <xsl:value-of select="'undefined'"/>
-      </xsl:otherwise>
-    </xsl:choose>
-  </xsl:function>
-  <xsl:function name="e:fig-id-type" as="xs:string">
-    <xsl:param name="s" as="xs:string"/>
-    <xsl:choose>
-      <xsl:when test="matches($s,'^fig[0-9]{1,3}$')">
-        <xsl:value-of select="'Figure'"/>
-      </xsl:when>
-      <xsl:when test="matches($s,'^fig[0-9]{1,3}s[0-9]{1,3}$')">
-        <xsl:value-of select="'Figure supplement'"/>
-      </xsl:when>
-      <xsl:when test="matches($s,'^box[0-9]{1,3}fig[0-9]{1,3}$')">
-        <xsl:value-of select="'Box figure'"/>
-      </xsl:when>
-      <xsl:when test="matches($s,'^app[0-9]{1,3}fig[0-9]{1,3}$')">
-        <xsl:value-of select="'Appendix figure'"/>
-      </xsl:when>
-      <xsl:when test="matches($s,'^app[0-9]{1,3}fig[0-9]{1,3}s[0-9]{1,3}$')">
-        <xsl:value-of select="'Appendix figure supplement'"/>
-      </xsl:when>
-      <xsl:when test="matches($s,'^respfig[0-9]{1,3}$|^sa[0-9]fig[0-9]{1,3}$')">
-        <xsl:value-of select="'Author response figure'"/>
-      </xsl:when>
-      <xsl:when test="matches($s,'^C[0-9]{1,3}$|^chem[0-9]{1,3}$')">
-        <xsl:value-of select="'Chemical structure'"/>
-      </xsl:when>
-      <xsl:when test="matches($s,'^app[0-9]{1,3}C[0-9]{1,3}$|^app[0-9]{1,3}chem[0-9]{1,3}$')">
-        <xsl:value-of select="'Appendix chemical structure'"/>
-      </xsl:when>
-      <xsl:when test="matches($s,'^S[0-9]{1,3}$|^scheme[0-9]{1,3}$')">
-        <xsl:value-of select="'Scheme'"/>
-      </xsl:when>
-      <xsl:when test="matches($s,'^app[0-9]{1,3}S[0-9]{1,3}$|^app[0-9]{1,3}scheme[0-9]{1,3}$')">
-        <xsl:value-of select="'Appendix scheme'"/>
-      </xsl:when>
-      <xsl:otherwise>
-        <xsl:value-of select="'undefined'"/>
-      </xsl:otherwise>
-    </xsl:choose>
-  </xsl:function>
-  <xsl:function name="e:stripDiacritics" as="xs:string">
-    <xsl:param name="string" as="xs:string"/>
-    <xsl:value-of select="replace(replace(replace(translate(normalize-unicode($string,'NFD'),'ƀȼđɇǥħɨıɉꝁłøɍŧɏƶ','bcdeghiijklortyz'),'[\p{M}’]',''),'æ','ae'),'ß','ss')"/>
-  </xsl:function>
-  <xsl:function name="e:ref-list-string" as="xs:string">
-    <xsl:param name="ref"/>
-    <xsl:choose>
-      <xsl:when test="$ref/element-citation[1]/person-group[1]/* and $ref/element-citation[1]/year">
-        <xsl:value-of select="concat(           replace(e:get-collab-or-surname($ref/element-citation[1]/person-group[1]/*[1]),'\p{Zs}',''),           ' ',           $ref/element-citation[1]/year[1],           ' ',           string-join(for $x in $ref/element-citation[1]/person-group[1]/*[position()=(2,3)]           return replace(e:get-collab-or-surname($x),'\p{Zs}',''),' ')           )"/>
-      </xsl:when>
-      <xsl:when test="$ref/element-citation/person-group[1]/*">
-        <xsl:value-of select="concat(           replace(e:get-collab-or-surname($ref/element-citation[1]/person-group[1]/*[1]),'\p{Zs}',''),           ' 9999 ',           string-join(for $x in $ref/element-citation[1]/person-group[1]/*[position()=(2,3)]           return replace(e:get-collab-or-surname($x),'\p{Zs}',''),' ')           )"/>
-      </xsl:when>
-      <xsl:when test="$ref/element-citation/year">
-        <xsl:value-of select="concat(' ',$ref/element-citation[1]/year[1])"/>
-      </xsl:when>
-      <xsl:otherwise>
-        <xsl:value-of select="'zzzzz 9999'"/>
-      </xsl:otherwise>
-    </xsl:choose>
-  </xsl:function>
-  <xsl:function name="e:ref-list-string2" as="xs:string">
-    <xsl:param name="ref"/>
-    <xsl:choose>
-      <xsl:when test="$ref/element-citation[1]/year and count($ref/element-citation[1]/person-group[1]/*) = 2">
-        <xsl:value-of select="concat(           e:get-collab-or-surname($ref/element-citation[1]/person-group[1]/*[1]),           ' ',           e:get-collab-or-surname($ref/element-citation[1]/person-group[1]/*[2]),           ' ',           $ref/element-citation[1]/year[1])"/>
-      </xsl:when>
-      <xsl:when test="$ref/element-citation/person-group[1]/* and $ref/element-citation[1]/year">
-        <xsl:value-of select="concat(           e:get-collab-or-surname($ref/element-citation[1]/person-group[1]/*[1]),           ' ',           $ref/element-citation[1]/year[1])"/>
-      </xsl:when>
-      <xsl:when test="$ref/element-citation/person-group[1]/*">
-        <xsl:value-of select="concat(           e:get-collab-or-surname($ref/element-citation[1]/person-group[1]/*[1]),           ' 9999 ')"/>
-      </xsl:when>
-      <xsl:when test="$ref/element-citation/year">
-        <xsl:value-of select="concat(' ',$ref/element-citation[1]/year[1])"/>
-      </xsl:when>
-      <xsl:otherwise>
-        <xsl:value-of select="'zzzzz 9999'"/>
-      </xsl:otherwise>
-    </xsl:choose>
-  </xsl:function>
-  <xsl:function name="e:get-collab-or-surname" as="xs:string?">
-    <xsl:param name="collab-or-name"/>
-    <xsl:choose>
-      <xsl:when test="$collab-or-name/name()='collab'">
-        <xsl:value-of select="e:stripDiacritics(replace(lower-case($collab-or-name),'\.',''))"/>
-      </xsl:when>
-      <xsl:when test="$collab-or-name/surname">
-        <xsl:value-of select="e:stripDiacritics(lower-case($collab-or-name/surname[1]))"/>
-      </xsl:when>
-      <xsl:otherwise/>
-    </xsl:choose>
-  </xsl:function>
-  <xsl:function name="e:cite-name-text" as="xs:string">
-    <xsl:param name="person-group"/>
-    <xsl:choose>
-      <xsl:when test="(count($person-group/*) = 1) and $person-group/name">
-        <xsl:value-of select="$person-group/name/surname[1]"/>
-      </xsl:when>
-      <xsl:when test="(count($person-group/*) = 1) and $person-group/collab">
-        <xsl:value-of select="$person-group/collab"/>
-      </xsl:when>
-      <xsl:when test="(count($person-group/*) = 2) and (count($person-group/name) = 1) and $person-group/*[1]/local-name() = 'collab'">
-        <xsl:value-of select="concat($person-group/collab,' and ',$person-group/name/surname[1])"/>
-      </xsl:when>
-      <xsl:when test="(count($person-group/*) = 2) and (count($person-group/name) = 1) and $person-group/*[1]/local-name() = 'name'">
-        <xsl:value-of select="concat($person-group/name/surname[1],' and ',$person-group/collab)"/>
-      </xsl:when>
-      <xsl:when test="(count($person-group/*) = 2) and (count($person-group/name) = 2)">
-        <xsl:value-of select="concat($person-group/name[1]/surname[1],' and ',$person-group/name[2]/surname[1])"/>
-      </xsl:when>
-      <xsl:when test="(count($person-group/*) = 2) and (count($person-group/collab) = 2)">
-        <xsl:value-of select="concat($person-group/collab[1],' and ',$person-group/collab[2])"/>
-      </xsl:when>
-      <xsl:when test="(count($person-group/*) ge 2) and $person-group/*[1]/local-name() = 'collab'">
-        <xsl:value-of select="concat($person-group/collab[1], ' et al.')"/>
-      </xsl:when>
-      <xsl:when test="(count($person-group/*) ge 2) and $person-group/*[1]/local-name() = 'name'">
-        <xsl:value-of select="concat($person-group/name[1]/surname[1], ' et al.')"/>
-      </xsl:when>
-      <xsl:otherwise>
-        <xsl:value-of select="'undetermined'"/>
-      </xsl:otherwise>
-    </xsl:choose>
-  </xsl:function>
-  <xsl:function name="e:citation-format1" as="xs:string">
-    <xsl:param name="element-citation"/>
-    <xsl:choose>
-      <xsl:when test="$element-citation/person-group and $element-citation//year">
-        <xsl:value-of select="concat(e:cite-name-text($element-citation/person-group[1]),', ',$element-citation/descendant::year[1])"/>
-      </xsl:when>
-      <xsl:when test="$element-citation/person-group and not($element-citation//year)">
-        <xsl:value-of select="concat(e:cite-name-text($element-citation/person-group[1]),', ')"/>
-      </xsl:when>
-      <xsl:when test="not($element-citation/person-group) and $element-citation//year">
-        <xsl:value-of select="concat('et al., ',$element-citation/descendant::year[1])"/>
-      </xsl:when>
-      <xsl:otherwise>
-        <xsl:value-of select="', '"/>
-      </xsl:otherwise>
-    </xsl:choose>
-  </xsl:function>
-  <xsl:function name="e:citation-format2" as="xs:string">
-    <xsl:param name="element-citation"/>
-    <xsl:choose>
-      <xsl:when test="$element-citation/person-group and $element-citation//year">
-        <xsl:value-of select="concat(e:cite-name-text($element-citation/person-group[1]),' (',$element-citation/descendant::year[1],')')"/>
-      </xsl:when>
-      <xsl:when test="$element-citation/person-group and not($element-citation//year)">
-        <xsl:value-of select="concat(e:cite-name-text($element-citation/person-group[1]),' ()')"/>
-      </xsl:when>
-      <xsl:when test="not($element-citation/person-group) and $element-citation//year">
-        <xsl:value-of select="concat('et al. (',$element-citation/descendant::year[1],')')"/>
-      </xsl:when>
-      <xsl:otherwise>
-        <xsl:value-of select="', '"/>
-      </xsl:otherwise>
-    </xsl:choose>
-  </xsl:function>
-  <xsl:function name="e:ref-cite-list">
-    <xsl:param name="ref-list" as="node()"/>
-    <xsl:element name="list">
-      <xsl:for-each select="$ref-list/ref[element-citation[year]]">
-        <xsl:variable name="cite" select="e:citation-format1(./element-citation[1])"/>
-        <xsl:element name="item">
-          <xsl:attribute name="id">
-            <xsl:value-of select="./@id"/>
-          </xsl:attribute>
-          <xsl:attribute name="no-suffix">
-            <xsl:value-of select="replace($cite,'[A-Za-z]$','')"/>
-          </xsl:attribute>
-          <xsl:value-of select="$cite"/>
-        </xsl:element>
-      </xsl:for-each>
-    </xsl:element>
-  </xsl:function>
-  <xsl:function name="e:non-distinct-citations">
-    <xsl:param name="cite-list" as="node()"/>
-    <xsl:element name="list">
-    <xsl:for-each select="$cite-list//*:item">
-      <xsl:variable name="cite" select="./string()"/>
-      <xsl:choose>
-        <xsl:when test="./preceding::*:item/string() = $cite">
-          <xsl:element name="item">
-            <xsl:attribute name="id">
-              <xsl:value-of select="./@id"/>
-            </xsl:attribute>
-            <xsl:value-of select="$cite"/>
-          </xsl:element>
-        </xsl:when>
-        <xsl:when test="not(matches($cite,'[A-Za-z]$')) and (./preceding::*:item/@no-suffix/string() = $cite)">
-          <xsl:element name="item">
-            <xsl:attribute name="id">
-              <xsl:value-of select="./@id"/>
-            </xsl:attribute>
-          <xsl:value-of select="$cite"/>
-          </xsl:element>
-        </xsl:when>
-        <xsl:when test="not(matches($cite,'[A-Za-z]$')) and ./following::*:item/@no-suffix/string() = $cite">
-          <xsl:element name="item">
-            <xsl:attribute name="id">
-              <xsl:value-of select="./@id"/>
-            </xsl:attribute>
-          <xsl:value-of select="$cite"/>
-          </xsl:element>
-        </xsl:when>
-        <xsl:otherwise/>
-      </xsl:choose>
-    </xsl:for-each>
-    </xsl:element>
-  </xsl:function>
-  <xsl:function name="e:get-name" as="xs:string">
-    <xsl:param name="name"/>
-    <xsl:choose>
-      <xsl:when test="$name/given-names[1] and $name/surname[1] and $name/suffix[1]">
-        <xsl:value-of select="concat($name/given-names[1],' ',$name/surname[1],' ',$name/suffix[1])"/>
-      </xsl:when>
-      <xsl:when test="not($name/given-names[1]) and $name/surname[1] and $name/suffix[1]">
-        <xsl:value-of select="concat($name/surname[1],' ',$name/suffix[1])"/>
-      </xsl:when>
-      <xsl:when test="$name/given-names[1] and $name/surname[1] and not($name/suffix[1])">
-        <xsl:value-of select="concat($name/given-names[1],' ',$name/surname[1])"/>
-      </xsl:when>
-      <xsl:when test="not($name/given-names[1]) and $name/surname[1] and not($name/suffix[1])">
-        <xsl:value-of select="$name/surname[1]"/>
-      </xsl:when>
-      <xsl:otherwise>
-        
-        <xsl:value-of select="'No elements present'"/>
-      </xsl:otherwise>
-    </xsl:choose>
-  </xsl:function>
-  <xsl:function name="e:get-collab">
-    <xsl:param name="collab"/>
-    <xsl:for-each select="$collab/(*|text())">
-      <xsl:choose>
-        <xsl:when test="./name()='contrib-group'"/>
-        <xsl:otherwise>
-          <xsl:value-of select="."/>
-        </xsl:otherwise>
-      </xsl:choose>
-    </xsl:for-each>
-  </xsl:function>
-  <xsl:function name="e:isbn-sum" as="xs:integer">
-    <xsl:param name="s" as="xs:string"/>
-    <xsl:choose>
-      <xsl:when test="string-length($s) = 10">
-        <xsl:variable name="d1" select="number(substring($s,1,1)) * 10"/>
-        <xsl:variable name="d2" select="number(substring($s,2,1)) * 9"/>
-        <xsl:variable name="d3" select="number(substring($s,3,1)) * 8"/>
-        <xsl:variable name="d4" select="number(substring($s,4,1)) * 7"/>
-        <xsl:variable name="d5" select="number(substring($s,5,1)) * 6"/>
-        <xsl:variable name="d6" select="number(substring($s,6,1)) * 5"/>
-        <xsl:variable name="d7" select="number(substring($s,7,1)) * 4"/>
-        <xsl:variable name="d8" select="number(substring($s,8,1)) * 3"/>
-        <xsl:variable name="d9" select="number(substring($s,9,1)) * 2"/>
-        <xsl:variable name="d10" select="number(substring($s,10,1)) * 1"/>
-        <xsl:value-of select="number($d1 + $d2 + $d3 + $d4 + $d5 + $d6 + $d7 + $d8 + $d9 + $d10) mod 11"/>
-      </xsl:when>
-      <xsl:when test="string-length($s) = 13">
-        <xsl:variable name="d1" select="number(substring($s,1,1))"/>
-        <xsl:variable name="d2" select="number(substring($s,2,1)) * 3"/>
-        <xsl:variable name="d3" select="number(substring($s,3,1))"/>
-        <xsl:variable name="d4" select="number(substring($s,4,1)) * 3"/>
-        <xsl:variable name="d5" select="number(substring($s,5,1))"/>
-        <xsl:variable name="d6" select="number(substring($s,6,1)) * 3"/>
-        <xsl:variable name="d7" select="number(substring($s,7,1))"/>
-        <xsl:variable name="d8" select="number(substring($s,8,1)) * 3"/>
-        <xsl:variable name="d9" select="number(substring($s,9,1))"/>
-        <xsl:variable name="d10" select="number(substring($s,10,1)) * 3"/>
-        <xsl:variable name="d11" select="number(substring($s,11,1))"/>
-        <xsl:variable name="d12" select="number(substring($s,12,1)) * 3"/>
-        <xsl:variable name="d13" select="number(substring($s,13,1))"/>
-        <xsl:value-of select="number($d1 + $d2 + $d3 + $d4 + $d5 + $d6 + $d7 + $d8 + $d9 + $d10 + $d11 + $d12 + $d13) mod 10"/>
-      </xsl:when>
-      <xsl:otherwise>
-        <xsl:value-of select="number('1')"/>
-      </xsl:otherwise>
-    </xsl:choose>
-  </xsl:function>
-  <xsl:function name="e:escape-for-regex" as="xs:string">
-    <xsl:param name="arg" as="xs:string?"/>
-    <xsl:sequence select="replace($arg,'(\.|\[|\]|\\|\||\-|\^|\$|\?|\*|\+|\{|\}|\(|\))','\\$1')"/>
-  </xsl:function>
-  <xsl:function name="e:get-ordinal" as="xs:string">
-    <xsl:param name="value" as="xs:integer?"/>
-    <xsl:if test="translate(string($value), '0123456789', '') = '' and number($value) &gt; 0">
-      <xsl:variable name="mod100" select="$value mod 100"/>
-      <xsl:variable name="mod10" select="$value mod 10"/>
-      <xsl:choose>
-        <xsl:when test="$mod100 = 11 or $mod100 = 12 or $mod100 = 13">
-          <xsl:value-of select="concat($value,'th')"/>
-        </xsl:when>
-        <xsl:when test="$mod10 = 1">
-          <xsl:value-of select="concat($value,'st')"/>
-        </xsl:when>
-        <xsl:when test="$mod10 = 2">
-          <xsl:value-of select="concat($value,'nd')"/>
-        </xsl:when>
-        <xsl:when test="$mod10 = 3">
-          <xsl:value-of select="concat($value,'rd')"/>
-        </xsl:when>
-        <xsl:otherwise>
-          <xsl:value-of select="concat($value,'th')"/>
-        </xsl:otherwise>
-      </xsl:choose>
-    </xsl:if>
-  </xsl:function>
-  <let name="org-regex" value="'b\.\p{Zs}?subtilis|bacillus\p{Zs}?subtilis|d\.\p{Zs}?melanogaster|drosophila\p{Zs}?melanogaster|e\.\p{Zs}?coli|escherichia\p{Zs}?coli|s\.\p{Zs}?pombe|schizosaccharomyces\p{Zs}?pombe|s\.\p{Zs}?cerevisiae|saccharomyces\p{Zs}?cerevisiae|c\.\p{Zs}?elegans|caenorhabditis\p{Zs}?elegans|a\.\p{Zs}?thaliana|arabidopsis\p{Zs}?thaliana|m\.\p{Zs}?thermophila|myceliophthora\p{Zs}?thermophila|dictyostelium|p\.\p{Zs}?falciparum|plasmodium\p{Zs}?falciparum|s\.\p{Zs}?enterica|salmonella\p{Zs}?enterica|s\.\p{Zs}?pyogenes|streptococcus\p{Zs}?pyogenes|p\.\p{Zs}?dumerilii|platynereis\p{Zs}?dumerilii|p\.\p{Zs}?cynocephalus|papio\p{Zs}?cynocephalus|o\.\p{Zs}?fasciatus|oncopeltus\p{Zs}?fasciatus|n\.\p{Zs}?crassa|neurospora\p{Zs}?crassa|c\.\p{Zs}?intestinalis|ciona\p{Zs}?intestinalis|e\.\p{Zs}?cuniculi|encephalitozoon\p{Zs}?cuniculi|h\.\p{Zs}?salinarum|halobacterium\p{Zs}?salinarum|s\.\p{Zs}?solfataricus|sulfolobus\p{Zs}?solfataricus|s\.\p{Zs}?mediterranea|schmidtea\p{Zs}?mediterranea|s\.\p{Zs}?rosetta|salpingoeca\p{Zs}?rosetta|n\.\p{Zs}?vectensis|nematostella\p{Zs}?vectensis|s\.\p{Zs}?aureus|staphylococcus\p{Zs}?aureus|v\.\p{Zs}?cholerae|vibrio\p{Zs}?cholerae|t\.\p{Zs}?thermophila|tetrahymena\p{Zs}?thermophila|c\.\p{Zs}?reinhardtii|chlamydomonas\p{Zs}?reinhardtii|n\.\p{Zs}?attenuata|nicotiana\p{Zs}?attenuata|e\.\p{Zs}?carotovora|erwinia\p{Zs}?carotovora|e\.\p{Zs}?faecalis|h\.\p{Zs}?sapiens|homo\p{Zs}?sapiens|c\.\p{Zs}?trachomatis|chlamydia\p{Zs}?trachomatis|enterococcus\p{Zs}?faecalis|x\.\p{Zs}?laevis|xenopus\p{Zs}?laevis|x\.\p{Zs}?tropicalis|xenopus\p{Zs}?tropicalis|m\.\p{Zs}?musculus|mus\p{Zs}?musculus|d\.\p{Zs}?immigrans|drosophila\p{Zs}?immigrans|d\.\p{Zs}?subobscura|drosophila\p{Zs}?subobscura|d\.\p{Zs}?affinis|drosophila\p{Zs}?affinis|d\.\p{Zs}?obscura|drosophila\p{Zs}?obscura|f\.\p{Zs}?tularensis|francisella\p{Zs}?tularensis|p\.\p{Zs}?plantaginis|podosphaera\p{Zs}?plantaginis|p\.\p{Zs}?lanceolata|plantago\p{Zs}?lanceolata|m\.\p{Zs}?trossulus|mytilus\p{Zs}?trossulus|m\.\p{Zs}?edulis|mytilus\p{Zs}?edulis|m\.\p{Zs}?chilensis|mytilus\p{Zs}?chilensis|u\.\p{Zs}?maydis|ustilago\p{Zs}?maydis|p\.\p{Zs}?knowlesi|plasmodium\p{Zs}?knowlesi|p\.\p{Zs}?aeruginosa|pseudomonas\p{Zs}?aeruginosa|t\.\p{Zs}?brucei|trypanosoma\p{Zs}?brucei|t\.\p{Zs}?gondii|toxoplasma\p{Zs}?gondii|d\.\p{Zs}?rerio|danio\p{Zs}?rerio|yimenosaurus|lesothosaurus\p{Zs}?diagnosticus|l\.\p{Zs}?diagnosticus|scelidosaurus\p{Zs}?harrisonii|s\.\p{Zs}?harrisonii|haya\p{Zs}?griva|h\.\p{Zs}?griva|polacanthus\p{Zs}?foxii|p\.\p{Zs}?foxii|scutellosaurus\p{Zs}?lawleri|s\.\p{Zs}?lawleri|saichania\p{Zs}?chulsanensis|s\.\p{Zs}?chulsanensis|gargoyleosaurus\p{Zs}?parkpinorum|g\.\p{Zs}?parkpinorum|europelta\p{Zs}?carbonensis|e\.\p{Zs}?carbonensis|stegosaurus\p{Zs}?stenops|s\.\p{Zs}?stenops|pinacosaurus\p{Zs}?grangeri|p\.\p{Zs}?grangeri|tatisaurus\p{Zs}?oehleri|t\.\p{Zs}?oehleri|hungarosaurus\p{Zs}?tormai|h\.\p{Zs}?tormai|bienosaurus\p{Zs}?lufengensis|b\.\p{Zs}?lufengensis|fabrosaurus\p{Zs}?australis|f\.\p{Zs}?australis|chinshakiangosaurus\p{Zs}?chunghoensis|c\.\p{Zs}?chunghoensis|euoplocephalus\p{Zs}?tutus|e\.\p{Zs}?tutus|drosophila|xenopus|salmonella|g\.\p{Zs}?beringei|gorilla\p{Zs}?beringei|m\.\p{Zs}?assamensis|macaca\p{Zs}?assamensis|m\.\p{Zs}?fuscata|macaca\p{Zs}?fuscata|m\.\p{Zs}?mulatta|macaca\p{Zs}?mulatta|m\.\p{Zs}?nemestrina|macaca\p{Zs}?nemestrina|m\.\p{Zs}?sphinx|mandrillus\p{Zs}?sphinx|p\.\p{Zs}?anubis|papio\p{Zs}?anubis|p\.\p{Zs}?hamadryas|papio\p{Zs}?hamadryas|p\.\p{Zs}?paniscus|pan\p{Zs}?paniscus|p\.\p{Zs}?troglodytes|pan\p{Zs}?troglodytes'"/>
-  <let name="sec-title-regex" value="string-join(     for $x in tokenize($org-regex,'\|')     return concat('^',$x,'$')     ,'|')"/>
-  <xsl:function name="e:org-conform" as="xs:string">
-  <xsl:param name="s" as="xs:string"/>
-  <xsl:choose>
-    <xsl:when test="matches($s,'b\.\p{Zs}?subtilis')">
-      <xsl:value-of select="'B. subtilis'"/>
-    </xsl:when>
-    <xsl:when test="matches($s,'bacillus\p{Zs}?subtilis')">
-      <xsl:value-of select="'Bacillus subtilis'"/>
-    </xsl:when>
-    <xsl:when test="matches($s,'d\.\p{Zs}?melanogaster')">
-      <xsl:value-of select="'D. melanogaster'"/>
-    </xsl:when>
-    <xsl:when test="matches($s,'drosophila\p{Zs}?melanogaster')">
-      <xsl:value-of select="'Drosophila melanogaster'"/>
-    </xsl:when>
-    <xsl:when test="matches($s,'e\.\p{Zs}?coli')">
-      <xsl:value-of select="'E. coli'"/>
-    </xsl:when>
-    <xsl:when test="matches($s,'escherichia\p{Zs}?coli')">
-      <xsl:value-of select="'Escherichia coli'"/>
-    </xsl:when>
-    <xsl:when test="matches($s,'s\.\p{Zs}?pombe')">
-      <xsl:value-of select="'S. pombe'"/>
-    </xsl:when>
-    <xsl:when test="matches($s,'schizosaccharomyces\p{Zs}?pombe')">
-      <xsl:value-of select="'Schizosaccharomyces pombe'"/>
-    </xsl:when>
-    <xsl:when test="matches($s,'s\.\p{Zs}?cerevisiae')">
-      <xsl:value-of select="'S. cerevisiae'"/>
-    </xsl:when>
-    <xsl:when test="matches($s,'saccharomyces\p{Zs}?cerevisiae')">
-      <xsl:value-of select="'Saccharomyces cerevisiae'"/>
-    </xsl:when>
-    <xsl:when test="matches($s,'c\.\p{Zs}?elegans')">
-      <xsl:value-of select="'C. elegans'"/>
-    </xsl:when>
-    <xsl:when test="matches($s,'caenorhabditis\p{Zs}?elegans')">
-      <xsl:value-of select="'Caenorhabditis elegans'"/>
-    </xsl:when>
-    <xsl:when test="matches($s,'a\.\p{Zs}?thaliana')">
-      <xsl:value-of select="'A. thaliana'"/>
-    </xsl:when>
-    <xsl:when test="matches($s,'arabidopsis\p{Zs}?thaliana')">
-      <xsl:value-of select="'Arabidopsis thaliana'"/>
-    </xsl:when>
-    <xsl:when test="matches($s,'m\.\p{Zs}?thermophila')">
-      <xsl:value-of select="'M. thermophila'"/>
-    </xsl:when>
-    <xsl:when test="matches($s,'myceliophthora\p{Zs}?thermophila')">
-      <xsl:value-of select="'Myceliophthora thermophila'"/>
-    </xsl:when>
-    <xsl:when test="matches($s,'dictyostelium')">
-      <xsl:value-of select="'Dictyostelium'"/>
-    </xsl:when>
-    <xsl:when test="matches($s,'p\.\p{Zs}?falciparum')">
-      <xsl:value-of select="'P. falciparum'"/>
-    </xsl:when>
-    <xsl:when test="matches($s,'plasmodium\p{Zs}?falciparum')">
-      <xsl:value-of select="'Plasmodium falciparum'"/>
-    </xsl:when>
-    <xsl:when test="matches($s,'s\.\p{Zs}?enterica')">
-      <xsl:value-of select="'S. enterica'"/>
-    </xsl:when>
-    <xsl:when test="matches($s,'salmonella\p{Zs}?enterica')">
-      <xsl:value-of select="'Salmonella enterica'"/>
-    </xsl:when>
-    <xsl:when test="matches($s,'s\.\p{Zs}?pyogenes')">
-      <xsl:value-of select="'S. pyogenes'"/>
-    </xsl:when>
-    <xsl:when test="matches($s,'streptococcus\p{Zs}?pyogenes')">
-      <xsl:value-of select="'Streptococcus pyogenes'"/>
-    </xsl:when>
-    <xsl:when test="matches($s,'p\.\p{Zs}?dumerilii')">
-      <xsl:value-of select="'P. dumerilii'"/>
-    </xsl:when>
-    <xsl:when test="matches($s,'platynereis\p{Zs}?dumerilii')">
-      <xsl:value-of select="'Platynereis dumerilii'"/>
-    </xsl:when>
-    <xsl:when test="matches($s,'p\.\p{Zs}?cynocephalus')">
-      <xsl:value-of select="'P. cynocephalus'"/>
-    </xsl:when>
-    <xsl:when test="matches($s,'papio\p{Zs}?cynocephalus')">
-      <xsl:value-of select="'Papio cynocephalus'"/>
-    </xsl:when>
-    <xsl:when test="matches($s,'o\.\p{Zs}?fasciatus')">
-      <xsl:value-of select="'O. fasciatus'"/>
-    </xsl:when>
-    <xsl:when test="matches($s,'oncopeltus\p{Zs}?fasciatus')">
-      <xsl:value-of select="'Oncopeltus fasciatus'"/>
-    </xsl:when>
-    <xsl:when test="matches($s,'n\.\p{Zs}?crassa')">
-      <xsl:value-of select="'N. crassa'"/>
-    </xsl:when>
-    <xsl:when test="matches($s,'neurospora\p{Zs}?crassa')">
-      <xsl:value-of select="'Neurospora crassa'"/>
-    </xsl:when>
-    <xsl:when test="matches($s,'c\.\p{Zs}?intestinalis')">
-      <xsl:value-of select="'C. intestinalis'"/>
-    </xsl:when>
-    <xsl:when test="matches($s,'ciona\p{Zs}?intestinalis')">
-      <xsl:value-of select="'Ciona intestinalis'"/>
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-          </xsl:when>
-          <xsl:when test="contains(./@rid,'app')"/>
-          <xsl:when test="($rid-no lt $object-no) and (./following-sibling::text()[1] = '–') and (./following-sibling::*[1]/name()='xref') and (number(replace(replace(./following-sibling::xref[1]/@rid,'\-','.'),'[a-z]','')) gt number($object-no))">
-            <xsl:element name="match">
-              <xsl:attribute name="sec-id">
-                <xsl:value-of select="./ancestor::sec[1]/@id"/>
-              </xsl:attribute>
-              <xsl:value-of select="self::*"/>
-            </xsl:element>
-          </xsl:when>
-          <xsl:when test="($rid-no lt $object-no) and contains(.,$object-no) and (contains(.,'Videos') or contains(.,'videos') and contains(.,'–'))">
-            <xsl:element name="match">
-              <xsl:attribute name="sec-id">
-                <xsl:value-of select="./ancestor::sec[1]/@id"/>
-              </xsl:attribute>
-              <xsl:value-of select="self::*"/>
-            </xsl:element>
-          </xsl:when>
-          <xsl:when test="($rid-no lt $object-no) and (contains(.,'Videos') or contains(.,'videos') and contains(.,'—')) and ($text-no gt $object-no)">
-            <xsl:element name="match">
-              <xsl:attribute name="sec-id">
-                <xsl:value-of select="./ancestor::sec[1]/@id"/>
-              </xsl:attribute>
-              <xsl:value-of select="self::*"/>
-            </xsl:element>
-          </xsl:when>
-          <xsl:otherwise/>
-        </xsl:choose>
-      </xsl:for-each>
-    </xsl:element>
-  </xsl:function>
-  <xsl:function name="e:get-iso-pub-date">
-    <xsl:param name="element"/>
-    <xsl:choose>
-      <xsl:when test="$element/ancestor-or-self::article//article-meta/pub-date[(@date-type='publication') or (@date-type='pub')]/month">
-        <xsl:variable name="pub-date" select="$element/ancestor-or-self::article//article-meta/pub-date[(@date-type='publication') or (@date-type='pub')]"/>
-        <xsl:value-of select="concat($pub-date/year,'-',$pub-date/month,'-',$pub-date/day)"/>
-      </xsl:when>
-      <xsl:otherwise/>
-    </xsl:choose>
-  </xsl:function>
-  <xsl:function name="e:get-copyright-holder">
-    <xsl:param name="contrib-group"/>
-    <xsl:variable name="author-count" select="count($contrib-group/contrib[@contrib-type='author'])"/>
-    <xsl:choose>
-      <xsl:when test="$author-count lt 1"/>
-      <xsl:when test="$author-count = 1">
-        <xsl:choose>
-          <xsl:when test="$contrib-group/contrib[@contrib-type='author']/collab">
-            <xsl:value-of select="$contrib-group/contrib[@contrib-type='author']/collab[1]/text()[1]"/>
-          </xsl:when>
-          <xsl:otherwise>
-            <xsl:value-of select="$contrib-group/contrib[@contrib-type='author']/name[1]/surname[1]"/>
-          </xsl:otherwise>
-        </xsl:choose>
-      </xsl:when>
-      <xsl:when test="$author-count = 2">
-        <xsl:choose>
-          <xsl:when test="$contrib-group/contrib[@contrib-type='author']/collab">
-            <xsl:choose>
-              <xsl:when test="$contrib-group/contrib[@contrib-type='author'][1]/collab and $contrib-group/contrib[@contrib-type='author'][2]/collab">
-                <xsl:value-of select="concat($contrib-group/contrib[@contrib-type='author']/collab[1]/text()[1],' and ',$contrib-group/contrib[@contrib-type='author']/collab[2]/text()[1])"/>
-              </xsl:when>
-              <xsl:when test="$contrib-group/contrib[@contrib-type='author'][1]/collab">
-                <xsl:value-of select="concat($contrib-group/contrib[@contrib-type='author'][1]/collab[1]/text()[1],' and ',$contrib-group/contrib[@contrib-type='author'][2]/name[1]/surname[1])"/>
-              </xsl:when>
-              <xsl:otherwise>
-                <xsl:value-of select="concat($contrib-group/contrib[@contrib-type='author'][1]/name[1]/surname[1],' and ',$contrib-group/contrib[@contrib-type='author'][2]/collab[1]/text()[1])"/>
-              </xsl:otherwise>
-            </xsl:choose>
-          </xsl:when>
-          <xsl:otherwise>
-            <xsl:value-of select="concat($contrib-group/contrib[@contrib-type='author'][1]/name[1]/surname[1],' and ',$contrib-group/contrib[@contrib-type='author'][2]/name[1]/surname[1])"/>
-          </xsl:otherwise>
-        </xsl:choose>
-      </xsl:when>
-      
-      <xsl:otherwise>
-        <xsl:variable name="is-equal-contrib" select="if ($contrib-group/contrib[@contrib-type='author'][1]/@equal-contrib='yes') then true() else false()"/>
-        <xsl:choose>
-          <xsl:when test="$is-equal-contrib">
-            
-            <xsl:variable name="equal-contrib-rid" select="$contrib-group/contrib[@contrib-type='author'][1]/xref[starts-with(@rid,'equal-contrib')]/@rid"/>
-            <xsl:variable name="first-authors" select="$contrib-group/contrib[@contrib-type='author' and @equal-contrib='yes' and xref[@rid=$equal-contrib-rid] and not(preceding-sibling::contrib[not(xref[@rid=$equal-contrib-rid])])]"/>
-            <xsl:choose>
-              
-              <xsl:when test="$author-count = 3 and count($first-authors) = 3">
-                <xsl:value-of select="concat(e:get-surname($contrib-group/contrib[@contrib-type='author'][1]),                   ', ',                   e:get-surname($contrib-group/contrib[@contrib-type='author'][2]),                   ' and ',                   e:get-surname($contrib-group/contrib[@contrib-type='author'][3]))"/>
-              </xsl:when>
-              
-              <xsl:when test="count($first-authors) gt 3">
-                <xsl:variable name="first-auth-string" select="string-join(for $auth in $contrib-group/contrib[@contrib-type='author'][position() lt 4] return e:get-surname($auth),', ')"/>
-                <xsl:value-of select="concat($first-auth-string,' et al')"/>
-              </xsl:when>
-              
-              <xsl:otherwise>
-                <xsl:variable name="first-auth-string" select="string-join(for $auth in $first-authors return e:get-surname($auth),', ')"/>
-                <xsl:value-of select="concat($first-auth-string,' et al')"/>
-              </xsl:otherwise>
-            </xsl:choose>
-          </xsl:when>
-          
-          <xsl:otherwise>
-            <xsl:value-of select="concat(e:get-surname($contrib-group/contrib[@contrib-type='author'][1]),' et al')"/>
-          </xsl:otherwise>
-        </xsl:choose>
-      </xsl:otherwise>
-    </xsl:choose>
-  </xsl:function>
-  <xsl:function name="e:get-surname" as="text()">
-    <xsl:param name="contrib"/>
-    <xsl:choose>
-      <xsl:when test="$contrib/collab">
-        <xsl:value-of select="$contrib/collab[1]/text()[1]"/>
-      </xsl:when>
-      <xsl:otherwise>
-        <xsl:value-of select="$contrib//name[1]/surname[1]"/>
-      </xsl:otherwise>
-    </xsl:choose>
-  </xsl:function>
-  <xsl:function name="e:insight-box" as="element()">
-    <xsl:param name="box" as="xs:string"/>
-    <xsl:param name="cite-text" as="xs:string"/>
-    <xsl:variable name="box-text" select="substring-after(substring-after($box,'article'),' ')"/> 
-    
-    <xsl:element name="list">
-      <xsl:for-each select="tokenize($cite-text,'\p{Zs}')">
-        <xsl:choose>
-          <xsl:when test="contains($box-text,.)"/>
-          <xsl:otherwise>
-            <xsl:element name="item">
-              <xsl:attribute name="type">cite</xsl:attribute>
-              <xsl:value-of select="."/>
-            </xsl:element>
-          </xsl:otherwise>
-        </xsl:choose>
-      </xsl:for-each>
-      <xsl:for-each select="tokenize($box-text,'\p{Zs}')">
-        <xsl:choose>
-          <xsl:when test="contains($cite-text,.)"/>
-          <xsl:otherwise>
-            <xsl:element name="item">
-              <xsl:attribute name="type">box</xsl:attribute>
-              <xsl:value-of select="."/>
-            </xsl:element>
-          </xsl:otherwise>
-        </xsl:choose>
-      </xsl:for-each>
-    </xsl:element>
-  </xsl:function>
-  <let name="latin-regex" value="'in\p{Zs}+vitro|ex\p{Zs}+vitro|in\p{Zs}+vivo|ex\p{Zs}+vivo|a\p{Zs}+priori|a\p{Zs}+posteriori|de\p{Zs}+novo|in\p{Zs}+utero|in\p{Zs}+natura|in\p{Zs}+situ|in\p{Zs}+planta|in\p{Zs}+cellulo|rete\p{Zs}+mirabile|nomen\p{Zs}+novum| sensu |ad\p{Zs}+libitum|in\p{Zs}+ovo'"/>
-  <xsl:function name="e:get-latin-terms" as="element()">
-    <xsl:param name="article" as="element()"/>
-    <xsl:param name="regex" as="xs:string"/>
-    
-    <xsl:variable name="roman-text" select="lower-case(       string-join(for $x in $article/*[local-name() = 'body' or local-name() = 'back']//*       return       if ($x/ancestor-or-self::sec[@sec-type='additional-information']) then ()       else if ($x/ancestor-or-self::ref-list) then ()       else if ($x/local-name() = 'italic') then ()       else $x/text(),' '))"/>
-    <xsl:variable name="italic-text" select="lower-case(string-join($article//*:italic[not(ancestor::ref-list) and not(ancestor::sec[@sec-type='additional-information'])],' '))"/>
-    
-    
-    <xsl:element name="result">
-      <xsl:choose>
-        <xsl:when test="matches($roman-text,$regex)">
-          <xsl:element name="list">
-            <xsl:attribute name="list-type">roman</xsl:attribute>
-            <xsl:for-each select="tokenize($regex,'\|')">
-              <xsl:variable name="display" select="replace(replace(.,'\\p\{Zs\}\+',' '),'^ | $','')"/>
-              <xsl:element name="match">
-                <xsl:attribute name="count">
-                  <xsl:value-of select="count(tokenize($roman-text,.)) - 1"/>
-                </xsl:attribute>
-                <xsl:value-of select="$display"/>
-              </xsl:element>
-            </xsl:for-each>
-          </xsl:element>
-        </xsl:when>
-        <xsl:otherwise>
-          <xsl:element name="list">
-            <xsl:attribute name="list-type">roman</xsl:attribute>
-          </xsl:element>
-        </xsl:otherwise>
-      </xsl:choose>
-      <xsl:choose>
-        <xsl:when test="matches($italic-text,$regex)">
-          <xsl:element name="list">
-            <xsl:attribute name="list-type">italic</xsl:attribute>
-            <xsl:for-each select="tokenize($regex,'\|')">
-              <xsl:variable name="display" select="replace(.,'\\p\{Zs\}\+',' ')"/>
-              <xsl:element name="match">
-                <xsl:attribute name="count">
-                  <xsl:value-of select="count(tokenize($italic-text,.)) - 1"/>
-                </xsl:attribute>
-                <xsl:value-of select="$display"/>
-              </xsl:element>
-            </xsl:for-each>
-          </xsl:element>
-        </xsl:when>
-        <xsl:otherwise>
-          <xsl:element name="list">
-            <xsl:attribute name="list-type">italic</xsl:attribute>
-          </xsl:element>
-        </xsl:otherwise>
-      </xsl:choose>
-    </xsl:element>
-  </xsl:function>
-  <xsl:function name="e:print-latin-terms" as="xs:string">
-    <xsl:param name="list" as="element()"/>
-    <xsl:value-of select="string-join(       for $term in $list//*:match[@count != '0']        return if (number($term/@count) gt 1) then concat($term/@count,' instances of ',$term)       else concat($term/@count,' instance of ',$term)       ,', ')"/>
-  </xsl:function>
-  <xsl:function name="e:list-panels">
-    <xsl:param name="caption" as="xs:string"/>
-    <xsl:element name="list">
-      <xsl:for-each select="tokenize($caption,'\.\p{Zs}+')">
-        <xsl:if test="matches(.,'^[B-K]\p{P}?[A-K]?\.?\p{Zs}+')">
-          <xsl:element name="item">
-            <xsl:attribute name="token">
-              <xsl:value-of select="substring-before(.,' ')"/>
-            </xsl:attribute>
-            <xsl:value-of select="."/>
-          </xsl:element>
-        </xsl:if>
-      </xsl:for-each>
-    </xsl:element>
-  </xsl:function>
-  <xsl:function name="e:get-weekday" as="xs:integer?">
-    <xsl:param name="date" as="xs:anyAtomicType?"/>
-    <xsl:sequence select="       if (empty($date)) then ()       else xs:integer((xs:date($date) - xs:date('1901-01-06')) div xs:dayTimeDuration('P1D')) mod 7       "/>
-  </xsl:function>
-  <xsl:function name="e:line-count" as="xs:integer">
-    <xsl:param name="arg" as="xs:string?"/>
-    
-    <xsl:sequence select="count(tokenize($arg,'(\r\n?|\n\r?)'))"/>
-    
-  </xsl:function>
-  <pattern id="content-containers">
-    <rule context="mml:mi" id="math-mi-tests">
-      <report test="not(*) and normalize-space(.)=''" role="error" id="math-mi-empty-test">
-        <name/> element is completely empty. This is not allowed.</report>
-    </rule>
-  </pattern>
-  <pattern id="root-pattern">
-    <rule context="root" id="root-rule">
-      <assert test="descendant::mml:mi" role="error" id="math-mi-tests-xspec-assert">mml:mi must be present.</assert>
-    </rule>
-  </pattern>
-</schema>
\ No newline at end of file
diff --git a/test/tests/gen/math-mi-tests/math-mi-empty-test/pass.xml b/test/tests/gen/math-mi-tests/math-mi-empty-test/pass.xml
deleted file mode 100644
index b52a5eb22e..0000000000
--- a/test/tests/gen/math-mi-tests/math-mi-empty-test/pass.xml
+++ /dev/null
@@ -1,9 +0,0 @@
-<?oxygen SCHSchema="math-mi-empty-test.sch"?>
-<!--Context: mml:mi
-Test: report    not(*) and normalize-space(.)=''
-Message:  element is completely empty. This is not allowed. -->
-<root xmlns:ali="http://www.niso.org/schemas/ali/1.0/" xmlns:mml="http://www.w3.org/1998/Math/MathML" xmlns:xlink="http://www.w3.org/1999/xlink">
-    <article>
-        <inline-formula><mml:math id="inf1"><mml:mstyle displaystyle="true" scriptlevel="0"><mml:mrow class="MJX-TeXAtom-ORD"><mml:mover><mml:mi>i</mml:mi><mml:mo stretchy="false">¯</mml:mo></mml:mover></mml:mrow></mml:mstyle></mml:math></inline-formula>
-    </article>
-</root>
\ No newline at end of file
diff --git a/test/xspec/schematron.sch b/test/xspec/schematron.sch
index 6daa0c4b9c..de6a20181c 100644
--- a/test/xspec/schematron.sch
+++ b/test/xspec/schematron.sch
@@ -3546,9 +3546,6 @@
       
       <report test="matches(.,'^\p{Zs}$')" role="error" id="math-mi-space-test">
         <name/> element contains only spaces. Has "\" been used for space in the tex editor, instead of "\,"?</report>
-
-      <report test="not(*) and normalize-space(.)=''" role="error" id="math-mi-empty-test">
-        <name/> element is completely empty. This is not allowed.</report>
       
     </rule>
   </pattern>
diff --git a/test/xspec/schematron.xspec b/test/xspec/schematron.xspec
index a152a63782..820572a5b8 100644
--- a/test/xspec/schematron.xspec
+++ b/test/xspec/schematron.xspec
@@ -5727,16 +5727,6 @@
         <x:expect-report id="math-mi-space-test" role="error"/>
         <x:expect-not-assert id="math-mi-tests-xspec-assert" role="error"/>
       </x:scenario>
-      <x:scenario label="math-mi-empty-test-pass">
-        <x:context href="../tests/gen/math-mi-tests/math-mi-empty-test/pass.xml"/>
-        <x:expect-not-report id="math-mi-empty-test" role="error"/>
-        <x:expect-not-assert id="math-mi-tests-xspec-assert" role="error"/>
-      </x:scenario>
-      <x:scenario label="math-mi-empty-test-fail">
-        <x:context href="../tests/gen/math-mi-tests/math-mi-empty-test/fail.xml"/>
-        <x:expect-report id="math-mi-empty-test" role="error"/>
-        <x:expect-not-assert id="math-mi-tests-xspec-assert" role="error"/>
-      </x:scenario>
     </x:scenario>
     <x:scenario label="disp-formula-child-tests">
       <x:scenario label="disp-formula-child-test-1-pass">