From e7db9f2f3ae0b57a23743ed1390531062e0471ce Mon Sep 17 00:00:00 2001
From: Fred Atherden <43879983+fred-atherden@users.noreply.github.com>
Date: Tue, 5 Mar 2024 14:20:22 +0000
Subject: [PATCH] Add more pub-date checks

---
 src/final-JATS-schematron.sch                 |   40 +-
 src/final-JATS-schematron.xsl                 |  198 +--
 src/final-package-JATS-schematron.sch         |   40 +-
 src/pre-JATS-schematron.sch                   |   40 +-
 src/pre-JATS-schematron.xsl                   |  200 +--
 src/schematron.sch                            |   68 +-
 .../pub-date-child-test-1/fail.xml            |   17 +
 .../pub-date-child-test-1/pass.xml            |   15 +
 .../pub-date-child-test-1.sch                 | 1304 +++++++++++++++++
 .../pub-date-tests/pub-date-test-1/fail.xml   |   15 +
 .../pub-date-tests/pub-date-test-1/pass.xml   |   15 +
 .../pub-date-test-1/pub-date-test-1.sch       | 1304 +++++++++++++++++
 .../pub-date-tests/pub-date-test-2/fail.xml   |   15 +
 .../pub-date-tests/pub-date-test-2/pass.xml   |   15 +
 .../pub-date-test-2/pub-date-test-2.sch       | 1303 ++++++++++++++++
 .../pub-date-tests/pub-date-test-3/fail.xml   |   15 +
 .../pub-date-tests/pub-date-test-3/pass.xml   |   15 +
 .../pub-date-test-3/pub-date-test-3.sch       | 1303 ++++++++++++++++
 .../pub-date-tests/pub-date-test-4/fail.xml   |   15 +
 .../pub-date-tests/pub-date-test-4/pass.xml   |   15 +
 .../pub-date-test-4/pub-date-test-4.sch       | 1303 ++++++++++++++++
 .../pub-date-tests/pub-date-test-5/fail.xml   |   18 +
 .../pub-date-tests/pub-date-test-5/pass.xml   |   15 +
 .../pub-date-test-5/pub-date-test-5.sch       | 1303 ++++++++++++++++
 .../pub-date-tests/pub-date-test-6/fail.xml   |   15 +
 .../pub-date-tests/pub-date-test-6/pass.xml   |   15 +
 .../pub-date-test-6/pub-date-test-6.sch       | 1303 ++++++++++++++++
 .../pub-date-tests/pub-date-test-7/fail.xml   |   15 +
 .../pub-date-tests/pub-date-test-7/pass.xml   |   15 +
 .../pub-date-test-7/pub-date-test-7.sch       | 1303 ++++++++++++++++
 test/xspec/schematron.sch                     |   52 +-
 test/xspec/schematron.xspec                   |  148 +-
 32 files changed, 11100 insertions(+), 357 deletions(-)
 create mode 100644 test/tests/gen/pub-date-child-tests/pub-date-child-test-1/fail.xml
 create mode 100644 test/tests/gen/pub-date-child-tests/pub-date-child-test-1/pass.xml
 create mode 100644 test/tests/gen/pub-date-child-tests/pub-date-child-test-1/pub-date-child-test-1.sch
 create mode 100644 test/tests/gen/pub-date-tests/pub-date-test-1/fail.xml
 create mode 100644 test/tests/gen/pub-date-tests/pub-date-test-1/pass.xml
 create mode 100644 test/tests/gen/pub-date-tests/pub-date-test-1/pub-date-test-1.sch
 create mode 100644 test/tests/gen/pub-date-tests/pub-date-test-2/fail.xml
 create mode 100644 test/tests/gen/pub-date-tests/pub-date-test-2/pass.xml
 create mode 100644 test/tests/gen/pub-date-tests/pub-date-test-2/pub-date-test-2.sch
 create mode 100644 test/tests/gen/pub-date-tests/pub-date-test-3/fail.xml
 create mode 100644 test/tests/gen/pub-date-tests/pub-date-test-3/pass.xml
 create mode 100644 test/tests/gen/pub-date-tests/pub-date-test-3/pub-date-test-3.sch
 create mode 100644 test/tests/gen/pub-date-tests/pub-date-test-4/fail.xml
 create mode 100644 test/tests/gen/pub-date-tests/pub-date-test-4/pass.xml
 create mode 100644 test/tests/gen/pub-date-tests/pub-date-test-4/pub-date-test-4.sch
 create mode 100644 test/tests/gen/pub-date-tests/pub-date-test-5/fail.xml
 create mode 100644 test/tests/gen/pub-date-tests/pub-date-test-5/pass.xml
 create mode 100644 test/tests/gen/pub-date-tests/pub-date-test-5/pub-date-test-5.sch
 create mode 100644 test/tests/gen/pub-date-tests/pub-date-test-6/fail.xml
 create mode 100644 test/tests/gen/pub-date-tests/pub-date-test-6/pass.xml
 create mode 100644 test/tests/gen/pub-date-tests/pub-date-test-6/pub-date-test-6.sch
 create mode 100644 test/tests/gen/pub-date-tests/pub-date-test-7/fail.xml
 create mode 100644 test/tests/gen/pub-date-tests/pub-date-test-7/pass.xml
 create mode 100644 test/tests/gen/pub-date-tests/pub-date-test-7/pub-date-test-7.sch

diff --git a/src/final-JATS-schematron.sch b/src/final-JATS-schematron.sch
index 6e795ee28b..e2d12501fc 100644
--- a/src/final-JATS-schematron.sch
+++ b/src/final-JATS-schematron.sch
@@ -1915,31 +1915,33 @@
       
       <assert see="https://elifeproduction.slab.com/posts/references-ghxfa7uy#final-year-element-citation-conformity" test="matches(.,'^[1][6-9][0-9][0-9][a-z]?$|^[2]0[0-2][0-9][a-z]?$')" role="error" id="final-year-element-citation-conformity">[final-year-element-citation-conformity] year in reference must contain content which matches the regular expression '^[1][6-9][0-9][0-9][a-z]?$|^[2]0[0-2][0-9][a-z]?$' - '<value-of select="."/>' doesn't meet this requirement. If there is no year, and this cannot be determined yourself, please query this with the authors.</assert>
       
-    </rule></pattern><pattern id="pub-date-tests-1-pattern"><rule context="pub-date[not(@pub-type='collection')]" id="pub-date-tests-1">
+    </rule></pattern><pattern id="pub-date-tests-pattern"><rule context="pub-date" id="pub-date-tests">
+      <let name="allowed-attributes" value="('publication-format','date-type','iso-8601-date')"/>
       
+      <assert test="parent::article-meta" role="error" id="pub-date-test-1">[pub-date-test-1] pub-date can only be a child of article-meta. This one is a child of <value-of select="parent::*/name()"/></assert>
+
+      <report test="@*[not(name()=$allowed-attributes)]" role="error" id="pub-date-test-2">[pub-date-test-2] Only the following attributes are permitted on pub-date. This one has the following unallowed attributes: <value-of select="string-join(@*[not(name()=$allowed-attributes)]/name(),'; ')"/>.</report>
+
+      <report test="@publication-format and @publication-format!='electronic'" role="error" id="pub-date-test-3">[pub-date-test-3] pub-date has the attribute publication-format, but the value is "<value-of select="@publication-format"/>". The only permitted value is "electronic".</report>
+
+      <report test="@date-type and @date-type!='publication'" role="error" id="pub-date-test-4">[pub-date-test-4] pub-date has the attribute date-type, but the value is "<value-of select="@date-type"/>". The only permitted value is "publication".</report>
+
+      <report test="preceding-sibling::pub-date" role="error" id="pub-date-test-5">[pub-date-test-5] There can only be one pub-date in article-meta. But this pub-date has a preceding one.</report>
+
+      <assert test="@publication-format" role="error" id="pub-date-test-6">[pub-date-test-6] pub-date must have the attribute publication-format.</assert>
+
+      <assert test="@date-type" role="error" id="pub-date-test-7">[pub-date-test-7] pub-date must have the attribute date-type.</assert>
       
-      
-      <assert test="matches(day[1],'^[0-9]{2}$')" role="error" id="final-pub-date-test-1">[final-pub-date-test-1] pub-date must contain day in the format 00. Currently it is '<value-of select="day"/>'.</assert>
-      
-      
-      
-      <assert test="matches(month[1],'^[0-9]{2}$')" role="error" id="final-pub-date-test-2">[final-pub-date-test-2] pub-date must contain month in the format 00. Currently it is '<value-of select="month"/>'.</assert>
-      
-      <assert test="matches(year[1],'^[0-9]{4}$')" role="error" id="pub-date-test-3">[pub-date-test-3] pub-date must contain year in the format 0000. Currently it is '<value-of select="year"/>'.</assert>
-      
-    </rule></pattern><pattern id="press-pub-date-pattern"><rule context="pub-date[not(@pub-type='collection') and day and month and year][concat(year[1],'-',month[1],'-',day[1]) gt format-date(current-date(), '[Y0001]-[M01]-[D01]')]" id="press-pub-date">
+    </rule></pattern><pattern id="pub-date-child-tests-pattern"><rule context="pub-date/*" id="pub-date-child-tests">
+      <let name="allowed-children" value="('day','month','year')"/>
+
+    <assert test="name()=$allowed-children" role="error" id="pub-date-child-test-1">[pub-date-child-test-1] <value-of select="name()"/> is not allowed as a child of pub-date. The only permitted elements are <value-of select="string-join($allowed-children,'; ')"/>.</assert>
+
+     </rule></pattern><pattern id="press-pub-date-pattern"><rule context="pub-date[not(@pub-type='collection') and day and month and year][concat(year[1],'-',month[1],'-',day[1]) gt format-date(current-date(), '[Y0001]-[M01]-[D01]')]" id="press-pub-date">
       <let name="date" value="concat(year[1],'-',month[1],'-',day[1])"/>
       
       <report test="e:get-weekday($date) != 2" role="warning" id="press-pub-date-check">[press-pub-date-check] The publication date for this article is in the future (<value-of select="$date"/>), but the day of publication is not a Tuesday (for Press). Is that correct?</report>
       
-    </rule></pattern><pattern id="pub-date-tests-2-pattern"><rule context="pub-date[@pub-type='collection']" id="pub-date-tests-2">
-      
-      <assert test="matches(year[1],'^[0-9]{4}$')" role="error" id="pub-date-test-4">[pub-date-test-4] date must contain year in the format 0000. Currently it is '<value-of select="year"/>'.</assert>
-      
-      <report test="*/local-name() != 'year'" role="error" id="pub-date-test-5">[pub-date-test-5] pub-date[@pub-type='collection'] can only contain a year element.</report>
-      
-      <assert test="year[1] = parent::*/pub-date[@publication-format='electronic'][@date-type='publication']/year[1]" role="error" id="pub-date-test-6">[pub-date-test-6] pub-date[@pub-type='collection'] year must be the same as pub-date[@publication-format='electronic'][@date-type='publication'] year.</assert>
-      
     </rule></pattern><pattern id="pub-history-tests-pattern"><rule context="pub-history" id="pub-history-tests">
       
       <assert test="parent::article-meta" role="error" id="pub-history-parent">[pub-history-parent] <name/> is only allowed to be captured as a child of article-meta. This one is a child of <value-of select="parent::*/name()"/>.</assert>
diff --git a/src/final-JATS-schematron.xsl b/src/final-JATS-schematron.xsl
index 6b35377ce5..39dd0b1b12 100644
--- a/src/final-JATS-schematron.xsl
+++ b/src/final-JATS-schematron.xsl
@@ -1904,8 +1904,8 @@
             <xsl:attribute name="document">
                <xsl:value-of select="document-uri(/)"/>
             </xsl:attribute>
-            <xsl:attribute name="id">pub-date-tests-1-pattern</xsl:attribute>
-            <xsl:attribute name="name">pub-date-tests-1-pattern</xsl:attribute>
+            <xsl:attribute name="id">pub-date-tests-pattern</xsl:attribute>
+            <xsl:attribute name="name">pub-date-tests-pattern</xsl:attribute>
             <xsl:apply-templates/>
          </svrl:active-pattern>
          <xsl:apply-templates select="/" mode="M112"/>
@@ -1913,8 +1913,8 @@
             <xsl:attribute name="document">
                <xsl:value-of select="document-uri(/)"/>
             </xsl:attribute>
-            <xsl:attribute name="id">press-pub-date-pattern</xsl:attribute>
-            <xsl:attribute name="name">press-pub-date-pattern</xsl:attribute>
+            <xsl:attribute name="id">pub-date-child-tests-pattern</xsl:attribute>
+            <xsl:attribute name="name">pub-date-child-tests-pattern</xsl:attribute>
             <xsl:apply-templates/>
          </svrl:active-pattern>
          <xsl:apply-templates select="/" mode="M113"/>
@@ -1922,8 +1922,8 @@
             <xsl:attribute name="document">
                <xsl:value-of select="document-uri(/)"/>
             </xsl:attribute>
-            <xsl:attribute name="id">pub-date-tests-2-pattern</xsl:attribute>
-            <xsl:attribute name="name">pub-date-tests-2-pattern</xsl:attribute>
+            <xsl:attribute name="id">press-pub-date-pattern</xsl:attribute>
+            <xsl:attribute name="name">press-pub-date-pattern</xsl:attribute>
             <xsl:apply-templates/>
          </svrl:active-pattern>
          <xsl:apply-templates select="/" mode="M114"/>
@@ -9572,59 +9572,111 @@
       <xsl:apply-templates select="*" mode="M111"/>
    </xsl:template>
 
-   <!--PATTERN pub-date-tests-1-pattern-->
+   <!--PATTERN pub-date-tests-pattern-->
 
 
-	  <!--RULE pub-date-tests-1-->
-   <xsl:template match="pub-date[not(@pub-type='collection')]" priority="1000" mode="M112">
+	  <!--RULE pub-date-tests-->
+   <xsl:template match="pub-date" priority="1000" mode="M112">
+      <xsl:variable name="allowed-attributes" select="('publication-format','date-type','iso-8601-date')"/>
 
-		<!--ASSERT error-->
+		    <!--ASSERT error-->
       <xsl:choose>
-         <xsl:when test="matches(day[1],'^[0-9]{2}$')"/>
+         <xsl:when test="parent::article-meta"/>
          <xsl:otherwise>
-            <svrl:failed-assert xmlns:svrl="http://purl.oclc.org/dsdl/svrl" test="matches(day[1],'^[0-9]{2}$')">
-               <xsl:attribute name="id">final-pub-date-test-1</xsl:attribute>
+            <svrl:failed-assert xmlns:svrl="http://purl.oclc.org/dsdl/svrl" test="parent::article-meta">
+               <xsl:attribute name="id">pub-date-test-1</xsl:attribute>
                <xsl:attribute name="role">error</xsl:attribute>
                <xsl:attribute name="location">
                   <xsl:apply-templates select="." mode="schematron-select-full-path"/>
                </xsl:attribute>
-               <svrl:text>[final-pub-date-test-1] pub-date must contain day in the format 00. Currently it is '<xsl:text/>
-                  <xsl:value-of select="day"/>
-                  <xsl:text/>'.</svrl:text>
+               <svrl:text>[pub-date-test-1] pub-date can only be a child of article-meta. This one is a child of <xsl:text/>
+                  <xsl:value-of select="parent::*/name()"/>
+                  <xsl:text/>
+               </svrl:text>
             </svrl:failed-assert>
          </xsl:otherwise>
       </xsl:choose>
 
+		    <!--REPORT error-->
+      <xsl:if test="@*[not(name()=$allowed-attributes)]">
+         <svrl:successful-report xmlns:svrl="http://purl.oclc.org/dsdl/svrl" test="@*[not(name()=$allowed-attributes)]">
+            <xsl:attribute name="id">pub-date-test-2</xsl:attribute>
+            <xsl:attribute name="role">error</xsl:attribute>
+            <xsl:attribute name="location">
+               <xsl:apply-templates select="." mode="schematron-select-full-path"/>
+            </xsl:attribute>
+            <svrl:text>[pub-date-test-2] Only the following attributes are permitted on pub-date. This one has the following unallowed attributes: <xsl:text/>
+               <xsl:value-of select="string-join(@*[not(name()=$allowed-attributes)]/name(),'; ')"/>
+               <xsl:text/>.</svrl:text>
+         </svrl:successful-report>
+      </xsl:if>
+
+		    <!--REPORT error-->
+      <xsl:if test="@publication-format and @publication-format!='electronic'">
+         <svrl:successful-report xmlns:svrl="http://purl.oclc.org/dsdl/svrl" test="@publication-format and @publication-format!='electronic'">
+            <xsl:attribute name="id">pub-date-test-3</xsl:attribute>
+            <xsl:attribute name="role">error</xsl:attribute>
+            <xsl:attribute name="location">
+               <xsl:apply-templates select="." mode="schematron-select-full-path"/>
+            </xsl:attribute>
+            <svrl:text>[pub-date-test-3] pub-date has the attribute publication-format, but the value is "<xsl:text/>
+               <xsl:value-of select="@publication-format"/>
+               <xsl:text/>". The only permitted value is "electronic".</svrl:text>
+         </svrl:successful-report>
+      </xsl:if>
+
+		    <!--REPORT error-->
+      <xsl:if test="@date-type and @date-type!='publication'">
+         <svrl:successful-report xmlns:svrl="http://purl.oclc.org/dsdl/svrl" test="@date-type and @date-type!='publication'">
+            <xsl:attribute name="id">pub-date-test-4</xsl:attribute>
+            <xsl:attribute name="role">error</xsl:attribute>
+            <xsl:attribute name="location">
+               <xsl:apply-templates select="." mode="schematron-select-full-path"/>
+            </xsl:attribute>
+            <svrl:text>[pub-date-test-4] pub-date has the attribute date-type, but the value is "<xsl:text/>
+               <xsl:value-of select="@date-type"/>
+               <xsl:text/>". The only permitted value is "publication".</svrl:text>
+         </svrl:successful-report>
+      </xsl:if>
+
+		    <!--REPORT error-->
+      <xsl:if test="preceding-sibling::pub-date">
+         <svrl:successful-report xmlns:svrl="http://purl.oclc.org/dsdl/svrl" test="preceding-sibling::pub-date">
+            <xsl:attribute name="id">pub-date-test-5</xsl:attribute>
+            <xsl:attribute name="role">error</xsl:attribute>
+            <xsl:attribute name="location">
+               <xsl:apply-templates select="." mode="schematron-select-full-path"/>
+            </xsl:attribute>
+            <svrl:text>[pub-date-test-5] There can only be one pub-date in article-meta. But this pub-date has a preceding one.</svrl:text>
+         </svrl:successful-report>
+      </xsl:if>
+
 		    <!--ASSERT error-->
       <xsl:choose>
-         <xsl:when test="matches(month[1],'^[0-9]{2}$')"/>
+         <xsl:when test="@publication-format"/>
          <xsl:otherwise>
-            <svrl:failed-assert xmlns:svrl="http://purl.oclc.org/dsdl/svrl" test="matches(month[1],'^[0-9]{2}$')">
-               <xsl:attribute name="id">final-pub-date-test-2</xsl:attribute>
+            <svrl:failed-assert xmlns:svrl="http://purl.oclc.org/dsdl/svrl" test="@publication-format">
+               <xsl:attribute name="id">pub-date-test-6</xsl:attribute>
                <xsl:attribute name="role">error</xsl:attribute>
                <xsl:attribute name="location">
                   <xsl:apply-templates select="." mode="schematron-select-full-path"/>
                </xsl:attribute>
-               <svrl:text>[final-pub-date-test-2] pub-date must contain month in the format 00. Currently it is '<xsl:text/>
-                  <xsl:value-of select="month"/>
-                  <xsl:text/>'.</svrl:text>
+               <svrl:text>[pub-date-test-6] pub-date must have the attribute publication-format.</svrl:text>
             </svrl:failed-assert>
          </xsl:otherwise>
       </xsl:choose>
 
 		    <!--ASSERT error-->
       <xsl:choose>
-         <xsl:when test="matches(year[1],'^[0-9]{4}$')"/>
+         <xsl:when test="@date-type"/>
          <xsl:otherwise>
-            <svrl:failed-assert xmlns:svrl="http://purl.oclc.org/dsdl/svrl" test="matches(year[1],'^[0-9]{4}$')">
-               <xsl:attribute name="id">pub-date-test-3</xsl:attribute>
+            <svrl:failed-assert xmlns:svrl="http://purl.oclc.org/dsdl/svrl" test="@date-type">
+               <xsl:attribute name="id">pub-date-test-7</xsl:attribute>
                <xsl:attribute name="role">error</xsl:attribute>
                <xsl:attribute name="location">
                   <xsl:apply-templates select="." mode="schematron-select-full-path"/>
                </xsl:attribute>
-               <svrl:text>[pub-date-test-3] pub-date must contain year in the format 0000. Currently it is '<xsl:text/>
-                  <xsl:value-of select="year"/>
-                  <xsl:text/>'.</svrl:text>
+               <svrl:text>[pub-date-test-7] pub-date must have the attribute date-type.</svrl:text>
             </svrl:failed-assert>
          </xsl:otherwise>
       </xsl:choose>
@@ -9635,11 +9687,43 @@
       <xsl:apply-templates select="*" mode="M112"/>
    </xsl:template>
 
+   <!--PATTERN pub-date-child-tests-pattern-->
+
+
+	  <!--RULE pub-date-child-tests-->
+   <xsl:template match="pub-date/*" priority="1000" mode="M113">
+      <xsl:variable name="allowed-children" select="('day','month','year')"/>
+
+		    <!--ASSERT error-->
+      <xsl:choose>
+         <xsl:when test="name()=$allowed-children"/>
+         <xsl:otherwise>
+            <svrl:failed-assert xmlns:svrl="http://purl.oclc.org/dsdl/svrl" test="name()=$allowed-children">
+               <xsl:attribute name="id">pub-date-child-test-1</xsl:attribute>
+               <xsl:attribute name="role">error</xsl:attribute>
+               <xsl:attribute name="location">
+                  <xsl:apply-templates select="." mode="schematron-select-full-path"/>
+               </xsl:attribute>
+               <svrl:text>[pub-date-child-test-1] <xsl:text/>
+                  <xsl:value-of select="name()"/>
+                  <xsl:text/> is not allowed as a child of pub-date. The only permitted elements are <xsl:text/>
+                  <xsl:value-of select="string-join($allowed-children,'; ')"/>
+                  <xsl:text/>.</svrl:text>
+            </svrl:failed-assert>
+         </xsl:otherwise>
+      </xsl:choose>
+      <xsl:apply-templates select="*" mode="M113"/>
+   </xsl:template>
+   <xsl:template match="text()" priority="-1" mode="M113"/>
+   <xsl:template match="@*|node()" priority="-2" mode="M113">
+      <xsl:apply-templates select="*" mode="M113"/>
+   </xsl:template>
+
    <!--PATTERN press-pub-date-pattern-->
 
 
 	  <!--RULE press-pub-date-->
-   <xsl:template match="pub-date[not(@pub-type='collection') and day and month and year][concat(year[1],'-',month[1],'-',day[1]) gt format-date(current-date(), '[Y0001]-[M01]-[D01]')]" priority="1000" mode="M113">
+   <xsl:template match="pub-date[not(@pub-type='collection') and day and month and year][concat(year[1],'-',month[1],'-',day[1]) gt format-date(current-date(), '[Y0001]-[M01]-[D01]')]" priority="1000" mode="M114">
       <xsl:variable name="date" select="concat(year[1],'-',month[1],'-',day[1])"/>
 
 		    <!--REPORT warning-->
@@ -9655,62 +9739,6 @@
                <xsl:text/>), but the day of publication is not a Tuesday (for Press). Is that correct?</svrl:text>
          </svrl:successful-report>
       </xsl:if>
-      <xsl:apply-templates select="*" mode="M113"/>
-   </xsl:template>
-   <xsl:template match="text()" priority="-1" mode="M113"/>
-   <xsl:template match="@*|node()" priority="-2" mode="M113">
-      <xsl:apply-templates select="*" mode="M113"/>
-   </xsl:template>
-
-   <!--PATTERN pub-date-tests-2-pattern-->
-
-
-	  <!--RULE pub-date-tests-2-->
-   <xsl:template match="pub-date[@pub-type='collection']" priority="1000" mode="M114">
-
-		<!--ASSERT error-->
-      <xsl:choose>
-         <xsl:when test="matches(year[1],'^[0-9]{4}$')"/>
-         <xsl:otherwise>
-            <svrl:failed-assert xmlns:svrl="http://purl.oclc.org/dsdl/svrl" test="matches(year[1],'^[0-9]{4}$')">
-               <xsl:attribute name="id">pub-date-test-4</xsl:attribute>
-               <xsl:attribute name="role">error</xsl:attribute>
-               <xsl:attribute name="location">
-                  <xsl:apply-templates select="." mode="schematron-select-full-path"/>
-               </xsl:attribute>
-               <svrl:text>[pub-date-test-4] date must contain year in the format 0000. Currently it is '<xsl:text/>
-                  <xsl:value-of select="year"/>
-                  <xsl:text/>'.</svrl:text>
-            </svrl:failed-assert>
-         </xsl:otherwise>
-      </xsl:choose>
-
-		    <!--REPORT error-->
-      <xsl:if test="*/local-name() != 'year'">
-         <svrl:successful-report xmlns:svrl="http://purl.oclc.org/dsdl/svrl" test="*/local-name() != 'year'">
-            <xsl:attribute name="id">pub-date-test-5</xsl:attribute>
-            <xsl:attribute name="role">error</xsl:attribute>
-            <xsl:attribute name="location">
-               <xsl:apply-templates select="." mode="schematron-select-full-path"/>
-            </xsl:attribute>
-            <svrl:text>[pub-date-test-5] pub-date[@pub-type='collection'] can only contain a year element.</svrl:text>
-         </svrl:successful-report>
-      </xsl:if>
-
-		    <!--ASSERT error-->
-      <xsl:choose>
-         <xsl:when test="year[1] = parent::*/pub-date[@publication-format='electronic'][@date-type='publication']/year[1]"/>
-         <xsl:otherwise>
-            <svrl:failed-assert xmlns:svrl="http://purl.oclc.org/dsdl/svrl" test="year[1] = parent::*/pub-date[@publication-format='electronic'][@date-type='publication']/year[1]">
-               <xsl:attribute name="id">pub-date-test-6</xsl:attribute>
-               <xsl:attribute name="role">error</xsl:attribute>
-               <xsl:attribute name="location">
-                  <xsl:apply-templates select="." mode="schematron-select-full-path"/>
-               </xsl:attribute>
-               <svrl:text>[pub-date-test-6] pub-date[@pub-type='collection'] year must be the same as pub-date[@publication-format='electronic'][@date-type='publication'] year.</svrl:text>
-            </svrl:failed-assert>
-         </xsl:otherwise>
-      </xsl:choose>
       <xsl:apply-templates select="*" mode="M114"/>
    </xsl:template>
    <xsl:template match="text()" priority="-1" mode="M114"/>
diff --git a/src/final-package-JATS-schematron.sch b/src/final-package-JATS-schematron.sch
index 90e1b778d2..8a1ed9ff7d 100644
--- a/src/final-package-JATS-schematron.sch
+++ b/src/final-package-JATS-schematron.sch
@@ -1921,31 +1921,33 @@
       
       <assert see="https://elifeproduction.slab.com/posts/references-ghxfa7uy#final-year-element-citation-conformity" test="matches(.,'^[1][6-9][0-9][0-9][a-z]?$|^[2]0[0-2][0-9][a-z]?$')" role="error" id="final-year-element-citation-conformity">year in reference must contain content which matches the regular expression '^[1][6-9][0-9][0-9][a-z]?$|^[2]0[0-2][0-9][a-z]?$' - '<value-of select="."/>' doesn't meet this requirement. If there is no year, and this cannot be determined yourself, please query this with the authors.</assert>
       
-    </rule></pattern><pattern id="pub-date-tests-1-pattern"><rule context="pub-date[not(@pub-type='collection')]" id="pub-date-tests-1">
+    </rule></pattern><pattern id="pub-date-tests-pattern"><rule context="pub-date" id="pub-date-tests">
+      <let name="allowed-attributes" value="('publication-format','date-type','iso-8601-date')"/>
       
+      <assert test="parent::article-meta" role="error" id="pub-date-test-1">pub-date can only be a child of article-meta. This one is a child of <value-of select="parent::*/name()"/></assert>
+
+      <report test="@*[not(name()=$allowed-attributes)]" role="error" id="pub-date-test-2">Only the following attributes are permitted on pub-date. This one has the following unallowed attributes: <value-of select="string-join(@*[not(name()=$allowed-attributes)]/name(),'; ')"/>.</report>
+
+      <report test="@publication-format and @publication-format!='electronic'" role="error" id="pub-date-test-3">pub-date has the attribute publication-format, but the value is "<value-of select="@publication-format"/>". The only permitted value is "electronic".</report>
+
+      <report test="@date-type and @date-type!='publication'" role="error" id="pub-date-test-4">pub-date has the attribute date-type, but the value is "<value-of select="@date-type"/>". The only permitted value is "publication".</report>
+
+      <report test="preceding-sibling::pub-date" role="error" id="pub-date-test-5">There can only be one pub-date in article-meta. But this pub-date has a preceding one.</report>
+
+      <assert test="@publication-format" role="error" id="pub-date-test-6">pub-date must have the attribute publication-format.</assert>
+
+      <assert test="@date-type" role="error" id="pub-date-test-7">pub-date must have the attribute date-type.</assert>
       
-      
-      <assert test="matches(day[1],'^[0-9]{2}$')" role="error" id="final-pub-date-test-1">pub-date must contain day in the format 00. Currently it is '<value-of select="day"/>'.</assert>
-      
-      
-      
-      <assert test="matches(month[1],'^[0-9]{2}$')" role="error" id="final-pub-date-test-2">pub-date must contain month in the format 00. Currently it is '<value-of select="month"/>'.</assert>
-      
-      <assert test="matches(year[1],'^[0-9]{4}$')" role="error" id="pub-date-test-3">pub-date must contain year in the format 0000. Currently it is '<value-of select="year"/>'.</assert>
-      
-    </rule></pattern><pattern id="press-pub-date-pattern"><rule context="pub-date[not(@pub-type='collection') and day and month and year][concat(year[1],'-',month[1],'-',day[1]) gt format-date(current-date(), '[Y0001]-[M01]-[D01]')]" id="press-pub-date">
+    </rule></pattern><pattern id="pub-date-child-tests-pattern"><rule context="pub-date/*" id="pub-date-child-tests">
+      <let name="allowed-children" value="('day','month','year')"/>
+
+    <assert test="name()=$allowed-children" role="error" id="pub-date-child-test-1"><value-of select="name()"/> is not allowed as a child of pub-date. The only permitted elements are <value-of select="string-join($allowed-children,'; ')"/>.</assert>
+
+     </rule></pattern><pattern id="press-pub-date-pattern"><rule context="pub-date[not(@pub-type='collection') and day and month and year][concat(year[1],'-',month[1],'-',day[1]) gt format-date(current-date(), '[Y0001]-[M01]-[D01]')]" id="press-pub-date">
       <let name="date" value="concat(year[1],'-',month[1],'-',day[1])"/>
       
       <report test="e:get-weekday($date) != 2" role="warning" id="press-pub-date-check">The publication date for this article is in the future (<value-of select="$date"/>), but the day of publication is not a Tuesday (for Press). Is that correct?</report>
       
-    </rule></pattern><pattern id="pub-date-tests-2-pattern"><rule context="pub-date[@pub-type='collection']" id="pub-date-tests-2">
-      
-      <assert test="matches(year[1],'^[0-9]{4}$')" role="error" id="pub-date-test-4">date must contain year in the format 0000. Currently it is '<value-of select="year"/>'.</assert>
-      
-      <report test="*/local-name() != 'year'" role="error" id="pub-date-test-5">pub-date[@pub-type='collection'] can only contain a year element.</report>
-      
-      <assert test="year[1] = parent::*/pub-date[@publication-format='electronic'][@date-type='publication']/year[1]" role="error" id="pub-date-test-6">pub-date[@pub-type='collection'] year must be the same as pub-date[@publication-format='electronic'][@date-type='publication'] year.</assert>
-      
     </rule></pattern><pattern id="pub-history-tests-pattern"><rule context="pub-history" id="pub-history-tests">
       
       <assert test="parent::article-meta" role="error" id="pub-history-parent"><name/> is only allowed to be captured as a child of article-meta. This one is a child of <value-of select="parent::*/name()"/>.</assert>
diff --git a/src/pre-JATS-schematron.sch b/src/pre-JATS-schematron.sch
index dfd24f05ce..c96e17c18f 100644
--- a/src/pre-JATS-schematron.sch
+++ b/src/pre-JATS-schematron.sch
@@ -1860,31 +1860,33 @@
       
       
       
-    </rule></pattern><pattern id="pub-date-tests-1-pattern"><rule context="pub-date[not(@pub-type='collection')]" id="pub-date-tests-1">
+    </rule></pattern><pattern id="pub-date-tests-pattern"><rule context="pub-date" id="pub-date-tests">
+      <let name="allowed-attributes" value="('publication-format','date-type','iso-8601-date')"/>
       
-      <assert test="matches(day[1],'^[0-9]{2}$')" role="warning" id="pre-pub-date-test-1">[pre-pub-date-test-1] day is not present in pub-date.</assert>
-      
-      
-      
-      <assert test="matches(month[1],'^[0-9]{2}$')" role="warning" id="pre-pub-date-test-2">[pre-pub-date-test-2] month is not present in pub-date.</assert>
-      
-      
-      
-      <assert test="matches(year[1],'^[0-9]{4}$')" role="error" id="pub-date-test-3">[pub-date-test-3] pub-date must contain year in the format 0000. Currently it is '<value-of select="year"/>'.</assert>
+      <assert test="parent::article-meta" role="error" id="pub-date-test-1">[pub-date-test-1] pub-date can only be a child of article-meta. This one is a child of <value-of select="parent::*/name()"/></assert>
+
+      <report test="@*[not(name()=$allowed-attributes)]" role="error" id="pub-date-test-2">[pub-date-test-2] Only the following attributes are permitted on pub-date. This one has the following unallowed attributes: <value-of select="string-join(@*[not(name()=$allowed-attributes)]/name(),'; ')"/>.</report>
+
+      <report test="@publication-format and @publication-format!='electronic'" role="error" id="pub-date-test-3">[pub-date-test-3] pub-date has the attribute publication-format, but the value is "<value-of select="@publication-format"/>". The only permitted value is "electronic".</report>
+
+      <report test="@date-type and @date-type!='publication'" role="error" id="pub-date-test-4">[pub-date-test-4] pub-date has the attribute date-type, but the value is "<value-of select="@date-type"/>". The only permitted value is "publication".</report>
+
+      <report test="preceding-sibling::pub-date" role="error" id="pub-date-test-5">[pub-date-test-5] There can only be one pub-date in article-meta. But this pub-date has a preceding one.</report>
+
+      <assert test="@publication-format" role="error" id="pub-date-test-6">[pub-date-test-6] pub-date must have the attribute publication-format.</assert>
+
+      <assert test="@date-type" role="error" id="pub-date-test-7">[pub-date-test-7] pub-date must have the attribute date-type.</assert>
       
-    </rule></pattern><pattern id="press-pub-date-pattern"><rule context="pub-date[not(@pub-type='collection') and day and month and year][concat(year[1],'-',month[1],'-',day[1]) gt format-date(current-date(), '[Y0001]-[M01]-[D01]')]" id="press-pub-date">
+    </rule></pattern><pattern id="pub-date-child-tests-pattern"><rule context="pub-date/*" id="pub-date-child-tests">
+      <let name="allowed-children" value="('day','month','year')"/>
+
+    <assert test="name()=$allowed-children" role="error" id="pub-date-child-test-1">[pub-date-child-test-1] <value-of select="name()"/> is not allowed as a child of pub-date. The only permitted elements are <value-of select="string-join($allowed-children,'; ')"/>.</assert>
+
+     </rule></pattern><pattern id="press-pub-date-pattern"><rule context="pub-date[not(@pub-type='collection') and day and month and year][concat(year[1],'-',month[1],'-',day[1]) gt format-date(current-date(), '[Y0001]-[M01]-[D01]')]" id="press-pub-date">
       <let name="date" value="concat(year[1],'-',month[1],'-',day[1])"/>
       
       <report test="e:get-weekday($date) != 2" role="warning" id="press-pub-date-check">[press-pub-date-check] The publication date for this article is in the future (<value-of select="$date"/>), but the day of publication is not a Tuesday (for Press). Is that correct?</report>
       
-    </rule></pattern><pattern id="pub-date-tests-2-pattern"><rule context="pub-date[@pub-type='collection']" id="pub-date-tests-2">
-      
-      <assert test="matches(year[1],'^[0-9]{4}$')" role="error" id="pub-date-test-4">[pub-date-test-4] date must contain year in the format 0000. Currently it is '<value-of select="year"/>'.</assert>
-      
-      <report test="*/local-name() != 'year'" role="error" id="pub-date-test-5">[pub-date-test-5] pub-date[@pub-type='collection'] can only contain a year element.</report>
-      
-      <assert test="year[1] = parent::*/pub-date[@publication-format='electronic'][@date-type='publication']/year[1]" role="error" id="pub-date-test-6">[pub-date-test-6] pub-date[@pub-type='collection'] year must be the same as pub-date[@publication-format='electronic'][@date-type='publication'] year.</assert>
-      
     </rule></pattern><pattern id="pub-history-tests-pattern"><rule context="pub-history" id="pub-history-tests">
       
       <assert test="parent::article-meta" role="error" id="pub-history-parent">[pub-history-parent] <name/> is only allowed to be captured as a child of article-meta. This one is a child of <value-of select="parent::*/name()"/>.</assert>
diff --git a/src/pre-JATS-schematron.xsl b/src/pre-JATS-schematron.xsl
index 5340d09dc3..1e7561700e 100644
--- a/src/pre-JATS-schematron.xsl
+++ b/src/pre-JATS-schematron.xsl
@@ -1847,8 +1847,8 @@
             <xsl:attribute name="document">
                <xsl:value-of select="document-uri(/)"/>
             </xsl:attribute>
-            <xsl:attribute name="id">pub-date-tests-1-pattern</xsl:attribute>
-            <xsl:attribute name="name">pub-date-tests-1-pattern</xsl:attribute>
+            <xsl:attribute name="id">pub-date-tests-pattern</xsl:attribute>
+            <xsl:attribute name="name">pub-date-tests-pattern</xsl:attribute>
             <xsl:apply-templates/>
          </svrl:active-pattern>
          <xsl:apply-templates select="/" mode="M110"/>
@@ -1856,8 +1856,8 @@
             <xsl:attribute name="document">
                <xsl:value-of select="document-uri(/)"/>
             </xsl:attribute>
-            <xsl:attribute name="id">press-pub-date-pattern</xsl:attribute>
-            <xsl:attribute name="name">press-pub-date-pattern</xsl:attribute>
+            <xsl:attribute name="id">pub-date-child-tests-pattern</xsl:attribute>
+            <xsl:attribute name="name">pub-date-child-tests-pattern</xsl:attribute>
             <xsl:apply-templates/>
          </svrl:active-pattern>
          <xsl:apply-templates select="/" mode="M111"/>
@@ -1865,8 +1865,8 @@
             <xsl:attribute name="document">
                <xsl:value-of select="document-uri(/)"/>
             </xsl:attribute>
-            <xsl:attribute name="id">pub-date-tests-2-pattern</xsl:attribute>
-            <xsl:attribute name="name">pub-date-tests-2-pattern</xsl:attribute>
+            <xsl:attribute name="id">press-pub-date-pattern</xsl:attribute>
+            <xsl:attribute name="name">press-pub-date-pattern</xsl:attribute>
             <xsl:apply-templates/>
          </svrl:active-pattern>
          <xsl:apply-templates select="/" mode="M112"/>
@@ -9463,55 +9463,111 @@
       <xsl:apply-templates select="*" mode="M109"/>
    </xsl:template>
 
-   <!--PATTERN pub-date-tests-1-pattern-->
+   <!--PATTERN pub-date-tests-pattern-->
 
 
-	  <!--RULE pub-date-tests-1-->
-   <xsl:template match="pub-date[not(@pub-type='collection')]" priority="1000" mode="M110">
+	  <!--RULE pub-date-tests-->
+   <xsl:template match="pub-date" priority="1000" mode="M110">
+      <xsl:variable name="allowed-attributes" select="('publication-format','date-type','iso-8601-date')"/>
 
-		<!--ASSERT warning-->
+		    <!--ASSERT error-->
       <xsl:choose>
-         <xsl:when test="matches(day[1],'^[0-9]{2}$')"/>
+         <xsl:when test="parent::article-meta"/>
          <xsl:otherwise>
-            <svrl:failed-assert xmlns:svrl="http://purl.oclc.org/dsdl/svrl" test="matches(day[1],'^[0-9]{2}$')">
-               <xsl:attribute name="id">pre-pub-date-test-1</xsl:attribute>
-               <xsl:attribute name="role">warning</xsl:attribute>
+            <svrl:failed-assert xmlns:svrl="http://purl.oclc.org/dsdl/svrl" test="parent::article-meta">
+               <xsl:attribute name="id">pub-date-test-1</xsl:attribute>
+               <xsl:attribute name="role">error</xsl:attribute>
                <xsl:attribute name="location">
                   <xsl:apply-templates select="." mode="schematron-select-full-path"/>
                </xsl:attribute>
-               <svrl:text>[pre-pub-date-test-1] day is not present in pub-date.</svrl:text>
+               <svrl:text>[pub-date-test-1] pub-date can only be a child of article-meta. This one is a child of <xsl:text/>
+                  <xsl:value-of select="parent::*/name()"/>
+                  <xsl:text/>
+               </svrl:text>
             </svrl:failed-assert>
          </xsl:otherwise>
       </xsl:choose>
 
-		    <!--ASSERT warning-->
+		    <!--REPORT error-->
+      <xsl:if test="@*[not(name()=$allowed-attributes)]">
+         <svrl:successful-report xmlns:svrl="http://purl.oclc.org/dsdl/svrl" test="@*[not(name()=$allowed-attributes)]">
+            <xsl:attribute name="id">pub-date-test-2</xsl:attribute>
+            <xsl:attribute name="role">error</xsl:attribute>
+            <xsl:attribute name="location">
+               <xsl:apply-templates select="." mode="schematron-select-full-path"/>
+            </xsl:attribute>
+            <svrl:text>[pub-date-test-2] Only the following attributes are permitted on pub-date. This one has the following unallowed attributes: <xsl:text/>
+               <xsl:value-of select="string-join(@*[not(name()=$allowed-attributes)]/name(),'; ')"/>
+               <xsl:text/>.</svrl:text>
+         </svrl:successful-report>
+      </xsl:if>
+
+		    <!--REPORT error-->
+      <xsl:if test="@publication-format and @publication-format!='electronic'">
+         <svrl:successful-report xmlns:svrl="http://purl.oclc.org/dsdl/svrl" test="@publication-format and @publication-format!='electronic'">
+            <xsl:attribute name="id">pub-date-test-3</xsl:attribute>
+            <xsl:attribute name="role">error</xsl:attribute>
+            <xsl:attribute name="location">
+               <xsl:apply-templates select="." mode="schematron-select-full-path"/>
+            </xsl:attribute>
+            <svrl:text>[pub-date-test-3] pub-date has the attribute publication-format, but the value is "<xsl:text/>
+               <xsl:value-of select="@publication-format"/>
+               <xsl:text/>". The only permitted value is "electronic".</svrl:text>
+         </svrl:successful-report>
+      </xsl:if>
+
+		    <!--REPORT error-->
+      <xsl:if test="@date-type and @date-type!='publication'">
+         <svrl:successful-report xmlns:svrl="http://purl.oclc.org/dsdl/svrl" test="@date-type and @date-type!='publication'">
+            <xsl:attribute name="id">pub-date-test-4</xsl:attribute>
+            <xsl:attribute name="role">error</xsl:attribute>
+            <xsl:attribute name="location">
+               <xsl:apply-templates select="." mode="schematron-select-full-path"/>
+            </xsl:attribute>
+            <svrl:text>[pub-date-test-4] pub-date has the attribute date-type, but the value is "<xsl:text/>
+               <xsl:value-of select="@date-type"/>
+               <xsl:text/>". The only permitted value is "publication".</svrl:text>
+         </svrl:successful-report>
+      </xsl:if>
+
+		    <!--REPORT error-->
+      <xsl:if test="preceding-sibling::pub-date">
+         <svrl:successful-report xmlns:svrl="http://purl.oclc.org/dsdl/svrl" test="preceding-sibling::pub-date">
+            <xsl:attribute name="id">pub-date-test-5</xsl:attribute>
+            <xsl:attribute name="role">error</xsl:attribute>
+            <xsl:attribute name="location">
+               <xsl:apply-templates select="." mode="schematron-select-full-path"/>
+            </xsl:attribute>
+            <svrl:text>[pub-date-test-5] There can only be one pub-date in article-meta. But this pub-date has a preceding one.</svrl:text>
+         </svrl:successful-report>
+      </xsl:if>
+
+		    <!--ASSERT error-->
       <xsl:choose>
-         <xsl:when test="matches(month[1],'^[0-9]{2}$')"/>
+         <xsl:when test="@publication-format"/>
          <xsl:otherwise>
-            <svrl:failed-assert xmlns:svrl="http://purl.oclc.org/dsdl/svrl" test="matches(month[1],'^[0-9]{2}$')">
-               <xsl:attribute name="id">pre-pub-date-test-2</xsl:attribute>
-               <xsl:attribute name="role">warning</xsl:attribute>
+            <svrl:failed-assert xmlns:svrl="http://purl.oclc.org/dsdl/svrl" test="@publication-format">
+               <xsl:attribute name="id">pub-date-test-6</xsl:attribute>
+               <xsl:attribute name="role">error</xsl:attribute>
                <xsl:attribute name="location">
                   <xsl:apply-templates select="." mode="schematron-select-full-path"/>
                </xsl:attribute>
-               <svrl:text>[pre-pub-date-test-2] month is not present in pub-date.</svrl:text>
+               <svrl:text>[pub-date-test-6] pub-date must have the attribute publication-format.</svrl:text>
             </svrl:failed-assert>
          </xsl:otherwise>
       </xsl:choose>
 
 		    <!--ASSERT error-->
       <xsl:choose>
-         <xsl:when test="matches(year[1],'^[0-9]{4}$')"/>
+         <xsl:when test="@date-type"/>
          <xsl:otherwise>
-            <svrl:failed-assert xmlns:svrl="http://purl.oclc.org/dsdl/svrl" test="matches(year[1],'^[0-9]{4}$')">
-               <xsl:attribute name="id">pub-date-test-3</xsl:attribute>
+            <svrl:failed-assert xmlns:svrl="http://purl.oclc.org/dsdl/svrl" test="@date-type">
+               <xsl:attribute name="id">pub-date-test-7</xsl:attribute>
                <xsl:attribute name="role">error</xsl:attribute>
                <xsl:attribute name="location">
                   <xsl:apply-templates select="." mode="schematron-select-full-path"/>
                </xsl:attribute>
-               <svrl:text>[pub-date-test-3] pub-date must contain year in the format 0000. Currently it is '<xsl:text/>
-                  <xsl:value-of select="year"/>
-                  <xsl:text/>'.</svrl:text>
+               <svrl:text>[pub-date-test-7] pub-date must have the attribute date-type.</svrl:text>
             </svrl:failed-assert>
          </xsl:otherwise>
       </xsl:choose>
@@ -9522,11 +9578,43 @@
       <xsl:apply-templates select="*" mode="M110"/>
    </xsl:template>
 
+   <!--PATTERN pub-date-child-tests-pattern-->
+
+
+	  <!--RULE pub-date-child-tests-->
+   <xsl:template match="pub-date/*" priority="1000" mode="M111">
+      <xsl:variable name="allowed-children" select="('day','month','year')"/>
+
+		    <!--ASSERT error-->
+      <xsl:choose>
+         <xsl:when test="name()=$allowed-children"/>
+         <xsl:otherwise>
+            <svrl:failed-assert xmlns:svrl="http://purl.oclc.org/dsdl/svrl" test="name()=$allowed-children">
+               <xsl:attribute name="id">pub-date-child-test-1</xsl:attribute>
+               <xsl:attribute name="role">error</xsl:attribute>
+               <xsl:attribute name="location">
+                  <xsl:apply-templates select="." mode="schematron-select-full-path"/>
+               </xsl:attribute>
+               <svrl:text>[pub-date-child-test-1] <xsl:text/>
+                  <xsl:value-of select="name()"/>
+                  <xsl:text/> is not allowed as a child of pub-date. The only permitted elements are <xsl:text/>
+                  <xsl:value-of select="string-join($allowed-children,'; ')"/>
+                  <xsl:text/>.</svrl:text>
+            </svrl:failed-assert>
+         </xsl:otherwise>
+      </xsl:choose>
+      <xsl:apply-templates select="*" mode="M111"/>
+   </xsl:template>
+   <xsl:template match="text()" priority="-1" mode="M111"/>
+   <xsl:template match="@*|node()" priority="-2" mode="M111">
+      <xsl:apply-templates select="*" mode="M111"/>
+   </xsl:template>
+
    <!--PATTERN press-pub-date-pattern-->
 
 
 	  <!--RULE press-pub-date-->
-   <xsl:template match="pub-date[not(@pub-type='collection') and day and month and year][concat(year[1],'-',month[1],'-',day[1]) gt format-date(current-date(), '[Y0001]-[M01]-[D01]')]" priority="1000" mode="M111">
+   <xsl:template match="pub-date[not(@pub-type='collection') and day and month and year][concat(year[1],'-',month[1],'-',day[1]) gt format-date(current-date(), '[Y0001]-[M01]-[D01]')]" priority="1000" mode="M112">
       <xsl:variable name="date" select="concat(year[1],'-',month[1],'-',day[1])"/>
 
 		    <!--REPORT warning-->
@@ -9542,62 +9630,6 @@
                <xsl:text/>), but the day of publication is not a Tuesday (for Press). Is that correct?</svrl:text>
          </svrl:successful-report>
       </xsl:if>
-      <xsl:apply-templates select="*" mode="M111"/>
-   </xsl:template>
-   <xsl:template match="text()" priority="-1" mode="M111"/>
-   <xsl:template match="@*|node()" priority="-2" mode="M111">
-      <xsl:apply-templates select="*" mode="M111"/>
-   </xsl:template>
-
-   <!--PATTERN pub-date-tests-2-pattern-->
-
-
-	  <!--RULE pub-date-tests-2-->
-   <xsl:template match="pub-date[@pub-type='collection']" priority="1000" mode="M112">
-
-		<!--ASSERT error-->
-      <xsl:choose>
-         <xsl:when test="matches(year[1],'^[0-9]{4}$')"/>
-         <xsl:otherwise>
-            <svrl:failed-assert xmlns:svrl="http://purl.oclc.org/dsdl/svrl" test="matches(year[1],'^[0-9]{4}$')">
-               <xsl:attribute name="id">pub-date-test-4</xsl:attribute>
-               <xsl:attribute name="role">error</xsl:attribute>
-               <xsl:attribute name="location">
-                  <xsl:apply-templates select="." mode="schematron-select-full-path"/>
-               </xsl:attribute>
-               <svrl:text>[pub-date-test-4] date must contain year in the format 0000. Currently it is '<xsl:text/>
-                  <xsl:value-of select="year"/>
-                  <xsl:text/>'.</svrl:text>
-            </svrl:failed-assert>
-         </xsl:otherwise>
-      </xsl:choose>
-
-		    <!--REPORT error-->
-      <xsl:if test="*/local-name() != 'year'">
-         <svrl:successful-report xmlns:svrl="http://purl.oclc.org/dsdl/svrl" test="*/local-name() != 'year'">
-            <xsl:attribute name="id">pub-date-test-5</xsl:attribute>
-            <xsl:attribute name="role">error</xsl:attribute>
-            <xsl:attribute name="location">
-               <xsl:apply-templates select="." mode="schematron-select-full-path"/>
-            </xsl:attribute>
-            <svrl:text>[pub-date-test-5] pub-date[@pub-type='collection'] can only contain a year element.</svrl:text>
-         </svrl:successful-report>
-      </xsl:if>
-
-		    <!--ASSERT error-->
-      <xsl:choose>
-         <xsl:when test="year[1] = parent::*/pub-date[@publication-format='electronic'][@date-type='publication']/year[1]"/>
-         <xsl:otherwise>
-            <svrl:failed-assert xmlns:svrl="http://purl.oclc.org/dsdl/svrl" test="year[1] = parent::*/pub-date[@publication-format='electronic'][@date-type='publication']/year[1]">
-               <xsl:attribute name="id">pub-date-test-6</xsl:attribute>
-               <xsl:attribute name="role">error</xsl:attribute>
-               <xsl:attribute name="location">
-                  <xsl:apply-templates select="." mode="schematron-select-full-path"/>
-               </xsl:attribute>
-               <svrl:text>[pub-date-test-6] pub-date[@pub-type='collection'] year must be the same as pub-date[@publication-format='electronic'][@date-type='publication'] year.</svrl:text>
-            </svrl:failed-assert>
-         </xsl:otherwise>
-      </xsl:choose>
       <xsl:apply-templates select="*" mode="M112"/>
    </xsl:template>
    <xsl:template match="text()" priority="-1" mode="M112"/>
diff --git a/src/schematron.sch b/src/schematron.sch
index a865b81e2d..c9c4ae2e25 100644
--- a/src/schematron.sch
+++ b/src/schematron.sch
@@ -2531,29 +2531,47 @@
       
     </rule>
     
-    <rule context="pub-date[not(@pub-type='collection')]" id="pub-date-tests-1">
+    <rule context="pub-date" id="pub-date-tests">
+      <let name="allowed-attributes" value="('publication-format','date-type','iso-8601-date')"/>
       
-      <assert test="matches(day[1],'^[0-9]{2}$')" 
-        role="warning" 
-        id="pre-pub-date-test-1">day is not present in pub-date.</assert>
-      
-      <assert test="matches(day[1],'^[0-9]{2}$')" 
+      <assert test="parent::article-meta" 
         role="error" 
-        id="final-pub-date-test-1">pub-date must contain day in the format 00. Currently it is '<value-of select="day"/>'.</assert>
-      
-      <assert test="matches(month[1],'^[0-9]{2}$')" 
-        role="warning" 
-        id="pre-pub-date-test-2">month is not present in pub-date.</assert>
-      
-      <assert test="matches(month[1],'^[0-9]{2}$')" 
+        id="pub-date-test-1">pub-date can only be a child of article-meta. This one is a child of <value-of select="parent::*/name()"/></assert>
+
+      <report test="@*[not(name()=$allowed-attributes)]" 
         role="error" 
-        id="final-pub-date-test-2">pub-date must contain month in the format 00. Currently it is '<value-of select="month"/>'.</assert>
-      
-      <assert test="matches(year[1],'^[0-9]{4}$')" 
+        id="pub-date-test-2">Only the following attributes are permitted on pub-date. This one has the following unallowed attributes: <value-of select="string-join(@*[not(name()=$allowed-attributes)]/name(),'; ')"/>.</report>
+
+      <report test="@publication-format and @publication-format!='electronic'" 
+        role="error" 
+        id="pub-date-test-3">pub-date has the attribute publication-format, but the value is "<value-of select="@publication-format"/>". The only permitted value is "electronic".</report>
+
+      <report test="@date-type and @date-type!='publication'" 
+        role="error" 
+        id="pub-date-test-4">pub-date has the attribute date-type, but the value is "<value-of select="@date-type"/>". The only permitted value is "publication".</report>
+
+      <report test="preceding-sibling::pub-date" 
+        role="error" 
+        id="pub-date-test-5">There can only be one pub-date in article-meta. But this pub-date has a preceding one.</report>
+
+      <assert test="@publication-format" 
         role="error" 
-        id="pub-date-test-3">pub-date must contain year in the format 0000. Currently it is '<value-of select="year"/>'.</assert>
+        id="pub-date-test-6">pub-date must have the attribute publication-format.</assert>
+
+      <assert test="@date-type" 
+        role="error" 
+        id="pub-date-test-7">pub-date must have the attribute date-type.</assert>
       
     </rule>
+
+     <rule context="pub-date/*" id="pub-date-child-tests">
+      <let name="allowed-children" value="('day','month','year')"/>
+
+    <assert test="name()=$allowed-children" 
+        role="error" 
+        id="pub-date-child-test-1"><value-of select="name()"/> is not allowed as a child of pub-date. The only permitted elements are <value-of select="string-join($allowed-children,'; ')"/>.</assert>
+
+     </rule>
     
     <rule context="pub-date[not(@pub-type='collection') and day and month and year][concat(year[1],'-',month[1],'-',day[1]) gt format-date(current-date(), '[Y0001]-[M01]-[D01]')]" id="press-pub-date">
       <let name="date" value="concat(year[1],'-',month[1],'-',day[1])"/>
@@ -2564,22 +2582,6 @@
       
     </rule>
     
-    <rule context="pub-date[@pub-type='collection']" id="pub-date-tests-2">
-      
-      <assert test="matches(year[1],'^[0-9]{4}$')" 
-        role="error" 
-        id="pub-date-test-4">date must contain year in the format 0000. Currently it is '<value-of select="year"/>'.</assert>
-      
-      <report test="*/local-name() != 'year'" 
-        role="error" 
-        id="pub-date-test-5">pub-date[@pub-type='collection'] can only contain a year element.</report>
-      
-      <assert test="year[1] = parent::*/pub-date[@publication-format='electronic'][@date-type='publication']/year[1]" 
-        role="error" 
-        id="pub-date-test-6">pub-date[@pub-type='collection'] year must be the same as pub-date[@publication-format='electronic'][@date-type='publication'] year.</assert>
-      
-    </rule>
-    
     <rule context="pub-history" id="pub-history-tests">
       
       <assert test="parent::article-meta" 
diff --git a/test/tests/gen/pub-date-child-tests/pub-date-child-test-1/fail.xml b/test/tests/gen/pub-date-child-tests/pub-date-child-test-1/fail.xml
new file mode 100644
index 0000000000..4d310a7592
--- /dev/null
+++ b/test/tests/gen/pub-date-child-tests/pub-date-child-test-1/fail.xml
@@ -0,0 +1,17 @@
+<?oxygen SCHSchema="pub-date-child-test-1.sch"?>
+<!--Context: pub-date/*
+Test: assert    name()=$allowed-children
+Message:  is not allowed as a child of pub-date. The only permitted elements are . -->
+<root xmlns:ali="http://www.niso.org/schemas/ali/1.0/" xmlns:mml="http://www.w3.org/1998/Math/MathML" xmlns:xlink="http://www.w3.org/1999/xlink">
+    <article>
+        <article-meta>
+            <pub-date publication-format="electronic" date-type="publication">
+                <era>Holocene</era>
+                <day>22</day>
+                <month>10</month>
+                <year>2023</year>
+                <season>Hunting season</season>
+            </pub-date>
+        </article-meta>
+    </article>
+</root>
\ No newline at end of file
diff --git a/test/tests/gen/pub-date-child-tests/pub-date-child-test-1/pass.xml b/test/tests/gen/pub-date-child-tests/pub-date-child-test-1/pass.xml
new file mode 100644
index 0000000000..5b227a0c4b
--- /dev/null
+++ b/test/tests/gen/pub-date-child-tests/pub-date-child-test-1/pass.xml
@@ -0,0 +1,15 @@
+<?oxygen SCHSchema="pub-date-child-test-1.sch"?>
+<!--Context: pub-date/*
+Test: assert    name()=$allowed-children
+Message:  is not allowed as a child of pub-date. The only permitted elements are . -->
+<root xmlns:ali="http://www.niso.org/schemas/ali/1.0/" xmlns:mml="http://www.w3.org/1998/Math/MathML" xmlns:xlink="http://www.w3.org/1999/xlink">
+    <article>
+        <article-meta>
+            <pub-date publication-format="electronic" date-type="publication">
+                <day>22</day>
+                <month>10</month>
+                <year>2023</year>
+            </pub-date>
+        </article-meta>
+    </article>
+</root>
\ No newline at end of file
diff --git a/test/tests/gen/pub-date-child-tests/pub-date-child-test-1/pub-date-child-test-1.sch b/test/tests/gen/pub-date-child-tests/pub-date-child-test-1/pub-date-child-test-1.sch
new file mode 100644
index 0000000000..41a8c5817d
--- /dev/null
+++ b/test/tests/gen/pub-date-child-tests/pub-date-child-test-1/pub-date-child-test-1.sch
@@ -0,0 +1,1304 @@
+<schema xmlns="http://purl.oclc.org/dsdl/schematron" xmlns:xlink="http://www.w3.org/1999/xlink" xmlns:xsl="http://www.w3.org/1999/XSL/Transform" xmlns:java="http://www.java.com/" xmlns:file="java.io.File" xmlns:ali="http://www.niso.org/schemas/ali/1.0/" xmlns:mml="http://www.w3.org/1998/Math/MathML" queryBinding="xslt2">
+  <title>eLife Schematron</title>
+  <ns uri="http://www.niso.org/schemas/ali/1.0/" prefix="ali"/>
+  <ns uri="http://www.w3.org/XML/1998/namespace" prefix="xml"/>
+  <ns uri="http://www.w3.org/1999/xlink" prefix="xlink"/>
+  <ns uri="http://www.w3.org/2001/XInclude" prefix="xi"/>
+  <ns uri="http://www.w3.org/1998/Math/MathML" prefix="mml"/>
+  <ns uri="http://saxon.sf.net/" prefix="saxon"/>
+  <ns uri="http://purl.org/dc/terms/" prefix="dc"/>
+  <ns uri="http://www.w3.org/2001/XMLSchema" prefix="xs"/>
+  <ns uri="https://elifesciences.org/namespace" prefix="e"/>
+  <ns uri="java.io.File" prefix="file"/>
+  <ns uri="http://www.java.com/" prefix="java"/>
+  <let name="features-subj" value="('Feature Article', 'Insight', 'Editorial')"/>
+  <let name="features-article-types" value="('article-commentary','editorial','discussion')"/>
+  <let name="research-subj" value="('Research Article', 'Short Report', 'Tools and Resources', 'Research Advance', 'Registered Report', 'Replication Study', 'Research Communication', 'Correction', 'Retraction', 'Scientific Correspondence', 'Review Article')"/>
+  <let name="notice-article-types" value="('correction','retraction','expression-of-concern')"/>
+  <let name="notice-display-types" value="('Correction','Retraction','Expression of Concern')"/>
+  <let name="allowed-article-types" value="('research-article','review-article',$features-article-types, $notice-article-types)"/>
+  <let name="allowed-disp-subj" value="($research-subj, $features-subj)"/>
+  <let name="MSAs" value="('Biochemistry and Chemical Biology', 'Cancer Biology', 'Cell Biology', 'Chromosomes and Gene Expression', 'Computational and Systems Biology', 'Developmental Biology', 'Ecology', 'Epidemiology and Global Health', 'Evolutionary Biology', 'Genetics and Genomics', 'Medicine', 'Immunology and Inflammation', 'Microbiology and Infectious Disease', 'Neuroscience', 'Physics of Living Systems', 'Plant Biology', 'Stem Cells and Regenerative Medicine', 'Structural Biology and Molecular Biophysics')"/>
+  <let name="funders" value="'../../../../../src/funders.xml'"/>
+  <let name="wellcome-fundref-ids" value="('http://dx.doi.org/10.13039/100010269','http://dx.doi.org/10.13039/100004440')"/>
+  <xsl:function name="e:is-prc" as="xs:boolean">
+    <xsl:param name="elem" as="node()"/>
+    <xsl:choose>
+      <xsl:when test="$elem/name()='article'">
+        <xsl:value-of select="e:is-prc-helper($elem)"/>
+      </xsl:when>
+      <xsl:otherwise>
+        <xsl:value-of select="e:is-prc-helper($elem/ancestor::article[1])"/>
+      </xsl:otherwise>
+    </xsl:choose>
+  </xsl:function>
+  <xsl:function name="e:is-prc-helper" as="xs:boolean">
+    <xsl:param name="article" as="node()"/>
+    <xsl:choose>
+      <xsl:when test="$article//article-meta/custom-meta-group/custom-meta[meta-name='publishing-route']/meta-value='prc'">
+        <xsl:value-of select="true()"/>
+      </xsl:when>
+      <xsl:otherwise>
+        <xsl:value-of select="false()"/>
+      </xsl:otherwise>
+    </xsl:choose>
+  </xsl:function>
+  <xsl:function name="e:get-version" as="xs:string">
+    <xsl:param name="elem" as="node()"/>
+    <xsl:choose>
+      <xsl:when test="$elem/name()='article'">
+        <xsl:value-of select="e:get-version-helper($elem)"/>
+      </xsl:when>
+      <xsl:otherwise>
+        <xsl:value-of select="e:get-version-helper($elem/ancestor::article[1])"/>
+      </xsl:otherwise>
+    </xsl:choose>
+  </xsl:function>
+  <xsl:function name="e:get-version-helper" as="xs:string">
+    <xsl:param name="article" as="node()"/>
+    <xsl:choose>
+      <xsl:when test="$article//article-meta/custom-meta-group/custom-meta[meta-name='schema-version']/meta-value">
+        <xsl:value-of select="$article//article-meta/custom-meta-group/custom-meta[meta-name='schema-version']/meta-value"/>
+      </xsl:when>
+      <xsl:otherwise>
+        <xsl:value-of select="'1'"/>
+      </xsl:otherwise>
+    </xsl:choose>
+  </xsl:function>
+  <xsl:function name="e:titleCaseToken" as="xs:string">
+    <xsl:param name="s" as="xs:string"/>
+    <xsl:choose>
+      <xsl:when test="contains($s,'-')">
+        <xsl:value-of select="concat(           upper-case(substring(substring-before($s,'-'), 1, 1)),           lower-case(substring(substring-before($s,'-'),2)),           '-',           upper-case(substring(substring-after($s,'-'), 1, 1)),           lower-case(substring(substring-after($s,'-'),2)))"/>
+      </xsl:when>
+      <xsl:when test="lower-case($s)='elife'">
+        <xsl:value-of select="'eLife'"/>
+      </xsl:when>
+      <xsl:when test="lower-case($s)=('and','or','the','an','of','in','as','at','by','for','a','to','up','but','yet')">
+        <xsl:value-of select="lower-case($s)"/>
+      </xsl:when>
+      <xsl:when test="matches(lower-case($s),'^rna$|^dna$|^mri$|^hiv$|^tor$|^aids$|^covid-19$|^covid$')">
+        <xsl:value-of select="upper-case($s)"/>
+      </xsl:when>
+      <xsl:when test="matches(lower-case($s),'[1-4]d')">
+        <xsl:value-of select="upper-case($s)"/>
+      </xsl:when>
+      <xsl:otherwise>
+        <xsl:value-of select="concat(upper-case(substring($s, 1, 1)), lower-case(substring($s, 2)))"/>
+      </xsl:otherwise>
+    </xsl:choose>
+  </xsl:function>
+  <xsl:function name="e:titleCase" as="xs:string">
+    <xsl:param name="s" as="xs:string"/>
+    <xsl:choose>
+      
+      <xsl:when test="lower-case($s)='protein kinase a'">
+        <xsl:value-of select="'Protein Kinase A'"/>
+      </xsl:when>
+      <xsl:when test="contains($s,' ')">
+        <xsl:variable name="token1" select="substring-before($s,' ')"/>
+        <xsl:variable name="token2" select="substring-after($s,$token1)"/>
+        <xsl:choose>
+          <xsl:when test="lower-case($token1)='elife'">
+            <xsl:value-of select="concat('eLife',               ' ',               string-join(for $x in tokenize(substring-after($token2,' '),'\p{Zs}') return e:titleCaseToken($x),' ')               )"/>
+          </xsl:when>
+          <xsl:when test="matches(lower-case($token1),'^rna$|^dna$|^mri$|^hiv$|^tor$|^aids$|^covid-19$|^covid$')">
+            <xsl:value-of select="concat(upper-case($token1),               ' ',               string-join(for $x in tokenize(substring-after($token2,' '),'\p{Zs}') return e:titleCaseToken($x),' ')               )"/>
+          </xsl:when>
+          <xsl:when test="matches(lower-case($token1),'[1-4]d')">
+            <xsl:value-of select="concat(upper-case($token1),               ' ',               string-join(for $x in tokenize(substring-after($token2,' '),'\p{Zs}') return e:titleCaseToken($x),' ')               )"/>
+          </xsl:when>
+          <xsl:when test="contains($token1,'-')">
+            <xsl:value-of select="string-join(for $x in tokenize($s,'\p{Zs}') return e:titleCaseToken($x),' ')"/>
+          </xsl:when>
+          <xsl:otherwise>
+            <xsl:value-of select="concat(               concat(upper-case(substring($token1, 1, 1)), lower-case(substring($token1, 2))),               ' ',               string-join(for $x in tokenize(substring-after($token2,' '),'\p{Zs}') return e:titleCaseToken($x),' ')               )"/>
+          </xsl:otherwise>
+        </xsl:choose>
+      </xsl:when>
+      <xsl:when test="lower-case($s)='elife'">
+        <xsl:value-of select="'eLife'"/>
+      </xsl:when>
+      <xsl:when test="lower-case($s)=('and','or','the','an','of')">
+        <xsl:value-of select="lower-case($s)"/>
+      </xsl:when>
+      <xsl:when test="matches(lower-case($s),'^rna$|^dna$|^mri$|^hiv$|^tor$|^aids$|^covid-19$|^covid$')">
+        <xsl:value-of select="upper-case($s)"/>
+      </xsl:when>
+      <xsl:when test="matches(lower-case($s),'[1-4]d')">
+        <xsl:value-of select="upper-case($s)"/>
+      </xsl:when>
+      <xsl:otherwise>
+        <xsl:value-of select="e:titleCaseToken($s)"/>
+      </xsl:otherwise>
+    </xsl:choose>
+  </xsl:function>
+  <xsl:function name="e:article-type2title" as="xs:string">
+    <xsl:param name="s" as="xs:string"/>
+    <xsl:choose>
+      <xsl:when test="$s = 'Replication Study'">
+        <xsl:value-of select="'Replication Study:'"/>
+      </xsl:when>
+      <xsl:when test="$s = 'Registered Report'">
+        <xsl:value-of select="'Registered report:'"/>
+      </xsl:when>
+      <xsl:when test="$s = 'Correction'">
+        <xsl:value-of select="'Correction:'"/>
+      </xsl:when>
+      <xsl:when test="$s = 'Retraction'">
+        <xsl:value-of select="'Retraction:'"/>
+      </xsl:when>
+      <xsl:when test="$s = 'Expression of Concern'">
+        <xsl:value-of select="'Expression of Concern:'"/>
+      </xsl:when>
+      <xsl:otherwise>
+        <xsl:value-of select="'undefined'"/>
+      </xsl:otherwise>
+    </xsl:choose>
+  </xsl:function>
+  <xsl:function name="e:sec-type2title" as="xs:string">
+    <xsl:param name="s" as="xs:string"/>
+    <xsl:choose>
+      <xsl:when test="$s = 'intro'">
+        <xsl:value-of select="'Introduction'"/>
+      </xsl:when>
+      <xsl:when test="$s = 'results'">
+        <xsl:value-of select="'Results'"/>
+      </xsl:when>
+      <xsl:when test="$s = 'discussion'">
+        <xsl:value-of select="'Discussion'"/>
+      </xsl:when>
+      <xsl:when test="$s = 'materials|methods'">
+        <xsl:value-of select="'Materials and methods'"/>
+      </xsl:when>
+      <xsl:when test="$s = 'results|discussion'">
+        <xsl:value-of select="'Results and discussion'"/>
+      </xsl:when>
+      <xsl:when test="$s = 'methods'">
+        <xsl:value-of select="'Methods'"/>
+      </xsl:when>
+      <xsl:when test="$s = 'model'">
+        <xsl:value-of select="'Model'"/>
+      </xsl:when>
+      <xsl:when test="$s = 'additional-information'">
+        <xsl:value-of select="'Additional information'"/>
+      </xsl:when>
+      <xsl:when test="$s = 'supplementary-material'">
+        <xsl:value-of select="'Additional files'"/>
+      </xsl:when>
+      <xsl:when test="$s = 'data-availability'">
+        <xsl:value-of select="'Data availability'"/>
+      </xsl:when>
+      <xsl:otherwise>
+        <xsl:value-of select="'undefined'"/>
+      </xsl:otherwise>
+    </xsl:choose>
+  </xsl:function>
+  <xsl:function name="e:fig-id-type" as="xs:string">
+    <xsl:param name="s" as="xs:string"/>
+    <xsl:choose>
+      <xsl:when test="matches($s,'^fig[0-9]{1,3}$')">
+        <xsl:value-of select="'Figure'"/>
+      </xsl:when>
+      <xsl:when test="matches($s,'^fig[0-9]{1,3}s[0-9]{1,3}$')">
+        <xsl:value-of select="'Figure supplement'"/>
+      </xsl:when>
+      <xsl:when test="matches($s,'^box[0-9]{1,3}fig[0-9]{1,3}$')">
+        <xsl:value-of select="'Box figure'"/>
+      </xsl:when>
+      <xsl:when test="matches($s,'^app[0-9]{1,3}fig[0-9]{1,3}$')">
+        <xsl:value-of select="'Appendix figure'"/>
+      </xsl:when>
+      <xsl:when test="matches($s,'^app[0-9]{1,3}fig[0-9]{1,3}s[0-9]{1,3}$')">
+        <xsl:value-of select="'Appendix figure supplement'"/>
+      </xsl:when>
+      <xsl:when test="matches($s,'^respfig[0-9]{1,3}$|^sa[0-9]fig[0-9]{1,3}$')">
+        <xsl:value-of select="'Author response figure'"/>
+      </xsl:when>
+      <xsl:when test="matches($s,'^C[0-9]{1,3}$|^chem[0-9]{1,3}$')">
+        <xsl:value-of select="'Chemical structure'"/>
+      </xsl:when>
+      <xsl:when test="matches($s,'^app[0-9]{1,3}C[0-9]{1,3}$|^app[0-9]{1,3}chem[0-9]{1,3}$')">
+        <xsl:value-of select="'Appendix chemical structure'"/>
+      </xsl:when>
+      <xsl:when test="matches($s,'^S[0-9]{1,3}$|^scheme[0-9]{1,3}$')">
+        <xsl:value-of select="'Scheme'"/>
+      </xsl:when>
+      <xsl:when test="matches($s,'^app[0-9]{1,3}S[0-9]{1,3}$|^app[0-9]{1,3}scheme[0-9]{1,3}$')">
+        <xsl:value-of select="'Appendix scheme'"/>
+      </xsl:when>
+      <xsl:otherwise>
+        <xsl:value-of select="'undefined'"/>
+      </xsl:otherwise>
+    </xsl:choose>
+  </xsl:function>
+  <xsl:function name="e:stripDiacritics" as="xs:string">
+    <xsl:param name="string" as="xs:string"/>
+    <xsl:value-of select="replace(replace(replace(translate(normalize-unicode($string,'NFD'),'ƀȼđɇǥħɨıɉꝁłøɍŧɏƶ','bcdeghiijklortyz'),'[\p{M}’]',''),'æ','ae'),'ß','ss')"/>
+  </xsl:function>
+  <xsl:function name="e:ref-list-string" as="xs:string">
+    <xsl:param name="ref"/>
+    <xsl:choose>
+      <xsl:when test="$ref/element-citation[1]/person-group[1]/* and $ref/element-citation[1]/year">
+        <xsl:value-of select="concat(           replace(e:get-collab-or-surname($ref/element-citation[1]/person-group[1]/*[1]),'\p{Zs}',''),           ' ',           $ref/element-citation[1]/year[1],           ' ',           string-join(for $x in $ref/element-citation[1]/person-group[1]/*[position()=(2,3)]           return replace(e:get-collab-or-surname($x),'\p{Zs}',''),' ')           )"/>
+      </xsl:when>
+      <xsl:when test="$ref/element-citation/person-group[1]/*">
+        <xsl:value-of select="concat(           replace(e:get-collab-or-surname($ref/element-citation[1]/person-group[1]/*[1]),'\p{Zs}',''),           ' 9999 ',           string-join(for $x in $ref/element-citation[1]/person-group[1]/*[position()=(2,3)]           return replace(e:get-collab-or-surname($x),'\p{Zs}',''),' ')           )"/>
+      </xsl:when>
+      <xsl:when test="$ref/element-citation/year">
+        <xsl:value-of select="concat(' ',$ref/element-citation[1]/year[1])"/>
+      </xsl:when>
+      <xsl:otherwise>
+        <xsl:value-of select="'zzzzz 9999'"/>
+      </xsl:otherwise>
+    </xsl:choose>
+  </xsl:function>
+  <xsl:function name="e:ref-list-string2" as="xs:string">
+    <xsl:param name="ref"/>
+    <xsl:choose>
+      <xsl:when test="$ref/element-citation[1]/year and count($ref/element-citation[1]/person-group[1]/*) = 2">
+        <xsl:value-of select="concat(           e:get-collab-or-surname($ref/element-citation[1]/person-group[1]/*[1]),           ' ',           e:get-collab-or-surname($ref/element-citation[1]/person-group[1]/*[2]),           ' ',           $ref/element-citation[1]/year[1])"/>
+      </xsl:when>
+      <xsl:when test="$ref/element-citation/person-group[1]/* and $ref/element-citation[1]/year">
+        <xsl:value-of select="concat(           e:get-collab-or-surname($ref/element-citation[1]/person-group[1]/*[1]),           ' ',           $ref/element-citation[1]/year[1])"/>
+      </xsl:when>
+      <xsl:when test="$ref/element-citation/person-group[1]/*">
+        <xsl:value-of select="concat(           e:get-collab-or-surname($ref/element-citation[1]/person-group[1]/*[1]),           ' 9999 ')"/>
+      </xsl:when>
+      <xsl:when test="$ref/element-citation/year">
+        <xsl:value-of select="concat(' ',$ref/element-citation[1]/year[1])"/>
+      </xsl:when>
+      <xsl:otherwise>
+        <xsl:value-of select="'zzzzz 9999'"/>
+      </xsl:otherwise>
+    </xsl:choose>
+  </xsl:function>
+  <xsl:function name="e:get-collab-or-surname" as="xs:string?">
+    <xsl:param name="collab-or-name"/>
+    <xsl:choose>
+      <xsl:when test="$collab-or-name/name()='collab'">
+        <xsl:value-of select="e:stripDiacritics(replace(lower-case($collab-or-name),'\.',''))"/>
+      </xsl:when>
+      <xsl:when test="$collab-or-name/surname">
+        <xsl:value-of select="e:stripDiacritics(lower-case($collab-or-name/surname[1]))"/>
+      </xsl:when>
+      <xsl:otherwise/>
+    </xsl:choose>
+  </xsl:function>
+  <xsl:function name="e:cite-name-text" as="xs:string">
+    <xsl:param name="person-group"/>
+    <xsl:choose>
+      <xsl:when test="(count($person-group/*) = 1) and $person-group/name">
+        <xsl:value-of select="$person-group/name/surname[1]"/>
+      </xsl:when>
+      <xsl:when test="(count($person-group/*) = 1) and $person-group/collab">
+        <xsl:value-of select="$person-group/collab"/>
+      </xsl:when>
+      <xsl:when test="(count($person-group/*) = 2) and (count($person-group/name) = 1) and $person-group/*[1]/local-name() = 'collab'">
+        <xsl:value-of select="concat($person-group/collab,' and ',$person-group/name/surname[1])"/>
+      </xsl:when>
+      <xsl:when test="(count($person-group/*) = 2) and (count($person-group/name) = 1) and $person-group/*[1]/local-name() = 'name'">
+        <xsl:value-of select="concat($person-group/name/surname[1],' and ',$person-group/collab)"/>
+      </xsl:when>
+      <xsl:when test="(count($person-group/*) = 2) and (count($person-group/name) = 2)">
+        <xsl:value-of select="concat($person-group/name[1]/surname[1],' and ',$person-group/name[2]/surname[1])"/>
+      </xsl:when>
+      <xsl:when test="(count($person-group/*) = 2) and (count($person-group/collab) = 2)">
+        <xsl:value-of select="concat($person-group/collab[1],' and ',$person-group/collab[2])"/>
+      </xsl:when>
+      <xsl:when test="(count($person-group/*) ge 2) and $person-group/*[1]/local-name() = 'collab'">
+        <xsl:value-of select="concat($person-group/collab[1], ' et al.')"/>
+      </xsl:when>
+      <xsl:when test="(count($person-group/*) ge 2) and $person-group/*[1]/local-name() = 'name'">
+        <xsl:value-of select="concat($person-group/name[1]/surname[1], ' et al.')"/>
+      </xsl:when>
+      <xsl:otherwise>
+        <xsl:value-of select="'undetermined'"/>
+      </xsl:otherwise>
+    </xsl:choose>
+  </xsl:function>
+  <xsl:function name="e:citation-format1" as="xs:string">
+    <xsl:param name="element-citation"/>
+    <xsl:choose>
+      <xsl:when test="$element-citation/person-group and $element-citation//year">
+        <xsl:value-of select="concat(e:cite-name-text($element-citation/person-group[1]),', ',$element-citation/descendant::year[1])"/>
+      </xsl:when>
+      <xsl:when test="$element-citation/person-group and not($element-citation//year)">
+        <xsl:value-of select="concat(e:cite-name-text($element-citation/person-group[1]),', ')"/>
+      </xsl:when>
+      <xsl:when test="not($element-citation/person-group) and $element-citation//year">
+        <xsl:value-of select="concat('et al., ',$element-citation/descendant::year[1])"/>
+      </xsl:when>
+      <xsl:otherwise>
+        <xsl:value-of select="', '"/>
+      </xsl:otherwise>
+    </xsl:choose>
+  </xsl:function>
+  <xsl:function name="e:citation-format2" as="xs:string">
+    <xsl:param name="element-citation"/>
+    <xsl:choose>
+      <xsl:when test="$element-citation/person-group and $element-citation//year">
+        <xsl:value-of select="concat(e:cite-name-text($element-citation/person-group[1]),' (',$element-citation/descendant::year[1],')')"/>
+      </xsl:when>
+      <xsl:when test="$element-citation/person-group and not($element-citation//year)">
+        <xsl:value-of select="concat(e:cite-name-text($element-citation/person-group[1]),' ()')"/>
+      </xsl:when>
+      <xsl:when test="not($element-citation/person-group) and $element-citation//year">
+        <xsl:value-of select="concat('et al. (',$element-citation/descendant::year[1],')')"/>
+      </xsl:when>
+      <xsl:otherwise>
+        <xsl:value-of select="', '"/>
+      </xsl:otherwise>
+    </xsl:choose>
+  </xsl:function>
+  <xsl:function name="e:ref-cite-list">
+    <xsl:param name="ref-list" as="node()"/>
+    <xsl:element name="list">
+      <xsl:for-each select="$ref-list/ref[element-citation[year]]">
+        <xsl:variable name="cite" select="e:citation-format1(./element-citation[1])"/>
+        <xsl:element name="item">
+          <xsl:attribute name="id">
+            <xsl:value-of select="./@id"/>
+          </xsl:attribute>
+          <xsl:attribute name="no-suffix">
+            <xsl:value-of select="replace($cite,'[A-Za-z]$','')"/>
+          </xsl:attribute>
+          <xsl:value-of select="$cite"/>
+        </xsl:element>
+      </xsl:for-each>
+    </xsl:element>
+  </xsl:function>
+  <xsl:function name="e:non-distinct-citations">
+    <xsl:param name="cite-list" as="node()"/>
+    <xsl:element name="list">
+    <xsl:for-each select="$cite-list//*:item">
+      <xsl:variable name="cite" select="./string()"/>
+      <xsl:choose>
+        <xsl:when test="./preceding::*:item/string() = $cite">
+          <xsl:element name="item">
+            <xsl:attribute name="id">
+              <xsl:value-of select="./@id"/>
+            </xsl:attribute>
+            <xsl:value-of select="$cite"/>
+          </xsl:element>
+        </xsl:when>
+        <xsl:when test="not(matches($cite,'[A-Za-z]$')) and (./preceding::*:item/@no-suffix/string() = $cite)">
+          <xsl:element name="item">
+            <xsl:attribute name="id">
+              <xsl:value-of select="./@id"/>
+            </xsl:attribute>
+          <xsl:value-of select="$cite"/>
+          </xsl:element>
+        </xsl:when>
+        <xsl:when test="not(matches($cite,'[A-Za-z]$')) and ./following::*:item/@no-suffix/string() = $cite">
+          <xsl:element name="item">
+            <xsl:attribute name="id">
+              <xsl:value-of select="./@id"/>
+            </xsl:attribute>
+          <xsl:value-of select="$cite"/>
+          </xsl:element>
+        </xsl:when>
+        <xsl:otherwise/>
+      </xsl:choose>
+    </xsl:for-each>
+    </xsl:element>
+  </xsl:function>
+  <xsl:function name="e:get-name" as="xs:string">
+    <xsl:param name="name"/>
+    <xsl:choose>
+      <xsl:when test="$name/given-names[1] and $name/surname[1] and $name/suffix[1]">
+        <xsl:value-of select="concat($name/given-names[1],' ',$name/surname[1],' ',$name/suffix[1])"/>
+      </xsl:when>
+      <xsl:when test="not($name/given-names[1]) and $name/surname[1] and $name/suffix[1]">
+        <xsl:value-of select="concat($name/surname[1],' ',$name/suffix[1])"/>
+      </xsl:when>
+      <xsl:when test="$name/given-names[1] and $name/surname[1] and not($name/suffix[1])">
+        <xsl:value-of select="concat($name/given-names[1],' ',$name/surname[1])"/>
+      </xsl:when>
+      <xsl:when test="not($name/given-names[1]) and $name/surname[1] and not($name/suffix[1])">
+        <xsl:value-of select="$name/surname[1]"/>
+      </xsl:when>
+      <xsl:otherwise>
+        
+        <xsl:value-of select="'No elements present'"/>
+      </xsl:otherwise>
+    </xsl:choose>
+  </xsl:function>
+  <xsl:function name="e:get-collab">
+    <xsl:param name="collab"/>
+    <xsl:for-each select="$collab/(*|text())">
+      <xsl:choose>
+        <xsl:when test="./name()='contrib-group'"/>
+        <xsl:otherwise>
+          <xsl:value-of select="."/>
+        </xsl:otherwise>
+      </xsl:choose>
+    </xsl:for-each>
+  </xsl:function>
+  <xsl:function name="e:isbn-sum" as="xs:integer">
+    <xsl:param name="s" as="xs:string"/>
+    <xsl:choose>
+      <xsl:when test="string-length($s) = 10">
+        <xsl:variable name="d1" select="number(substring($s,1,1)) * 10"/>
+        <xsl:variable name="d2" select="number(substring($s,2,1)) * 9"/>
+        <xsl:variable name="d3" select="number(substring($s,3,1)) * 8"/>
+        <xsl:variable name="d4" select="number(substring($s,4,1)) * 7"/>
+        <xsl:variable name="d5" select="number(substring($s,5,1)) * 6"/>
+        <xsl:variable name="d6" select="number(substring($s,6,1)) * 5"/>
+        <xsl:variable name="d7" select="number(substring($s,7,1)) * 4"/>
+        <xsl:variable name="d8" select="number(substring($s,8,1)) * 3"/>
+        <xsl:variable name="d9" select="number(substring($s,9,1)) * 2"/>
+        <xsl:variable name="d10" select="number(substring($s,10,1)) * 1"/>
+        <xsl:value-of select="number($d1 + $d2 + $d3 + $d4 + $d5 + $d6 + $d7 + $d8 + $d9 + $d10) mod 11"/>
+      </xsl:when>
+      <xsl:when test="string-length($s) = 13">
+        <xsl:variable name="d1" select="number(substring($s,1,1))"/>
+        <xsl:variable name="d2" select="number(substring($s,2,1)) * 3"/>
+        <xsl:variable name="d3" select="number(substring($s,3,1))"/>
+        <xsl:variable name="d4" select="number(substring($s,4,1)) * 3"/>
+        <xsl:variable name="d5" select="number(substring($s,5,1))"/>
+        <xsl:variable name="d6" select="number(substring($s,6,1)) * 3"/>
+        <xsl:variable name="d7" select="number(substring($s,7,1))"/>
+        <xsl:variable name="d8" select="number(substring($s,8,1)) * 3"/>
+        <xsl:variable name="d9" select="number(substring($s,9,1))"/>
+        <xsl:variable name="d10" select="number(substring($s,10,1)) * 3"/>
+        <xsl:variable name="d11" select="number(substring($s,11,1))"/>
+        <xsl:variable name="d12" select="number(substring($s,12,1)) * 3"/>
+        <xsl:variable name="d13" select="number(substring($s,13,1))"/>
+        <xsl:value-of select="number($d1 + $d2 + $d3 + $d4 + $d5 + $d6 + $d7 + $d8 + $d9 + $d10 + $d11 + $d12 + $d13) mod 10"/>
+      </xsl:when>
+      <xsl:otherwise>
+        <xsl:value-of select="number('1')"/>
+      </xsl:otherwise>
+    </xsl:choose>
+  </xsl:function>
+  <xsl:function name="e:escape-for-regex" as="xs:string">
+    <xsl:param name="arg" as="xs:string?"/>
+    <xsl:sequence select="replace($arg,'(\.|\[|\]|\\|\||\-|\^|\$|\?|\*|\+|\{|\}|\(|\))','\\$1')"/>
+  </xsl:function>
+  <xsl:function name="e:get-ordinal" as="xs:string">
+    <xsl:param name="value" as="xs:integer?"/>
+    <xsl:if test="translate(string($value), '0123456789', '') = '' and number($value) &gt; 0">
+      <xsl:variable name="mod100" select="$value mod 100"/>
+      <xsl:variable name="mod10" select="$value mod 10"/>
+      <xsl:choose>
+        <xsl:when test="$mod100 = 11 or $mod100 = 12 or $mod100 = 13">
+          <xsl:value-of select="concat($value,'th')"/>
+        </xsl:when>
+        <xsl:when test="$mod10 = 1">
+          <xsl:value-of select="concat($value,'st')"/>
+        </xsl:when>
+        <xsl:when test="$mod10 = 2">
+          <xsl:value-of select="concat($value,'nd')"/>
+        </xsl:when>
+        <xsl:when test="$mod10 = 3">
+          <xsl:value-of select="concat($value,'rd')"/>
+        </xsl:when>
+        <xsl:otherwise>
+          <xsl:value-of select="concat($value,'th')"/>
+        </xsl:otherwise>
+      </xsl:choose>
+    </xsl:if>
+  </xsl:function>
+  <let name="org-regex" value="'b\.\p{Zs}?subtilis|bacillus\p{Zs}?subtilis|d\.\p{Zs}?melanogaster|drosophila\p{Zs}?melanogaster|e\.\p{Zs}?coli|escherichia\p{Zs}?coli|s\.\p{Zs}?pombe|schizosaccharomyces\p{Zs}?pombe|s\.\p{Zs}?cerevisiae|saccharomyces\p{Zs}?cerevisiae|c\.\p{Zs}?elegans|caenorhabditis\p{Zs}?elegans|a\.\p{Zs}?thaliana|arabidopsis\p{Zs}?thaliana|m\.\p{Zs}?thermophila|myceliophthora\p{Zs}?thermophila|dictyostelium|p\.\p{Zs}?falciparum|plasmodium\p{Zs}?falciparum|s\.\p{Zs}?enterica|salmonella\p{Zs}?enterica|s\.\p{Zs}?pyogenes|streptococcus\p{Zs}?pyogenes|p\.\p{Zs}?dumerilii|platynereis\p{Zs}?dumerilii|p\.\p{Zs}?cynocephalus|papio\p{Zs}?cynocephalus|o\.\p{Zs}?fasciatus|oncopeltus\p{Zs}?fasciatus|n\.\p{Zs}?crassa|neurospora\p{Zs}?crassa|c\.\p{Zs}?intestinalis|ciona\p{Zs}?intestinalis|e\.\p{Zs}?cuniculi|encephalitozoon\p{Zs}?cuniculi|h\.\p{Zs}?salinarum|halobacterium\p{Zs}?salinarum|s\.\p{Zs}?solfataricus|sulfolobus\p{Zs}?solfataricus|s\.\p{Zs}?mediterranea|schmidtea\p{Zs}?mediterranea|s\.\p{Zs}?rosetta|salpingoeca\p{Zs}?rosetta|n\.\p{Zs}?vectensis|nematostella\p{Zs}?vectensis|s\.\p{Zs}?aureus|staphylococcus\p{Zs}?aureus|v\.\p{Zs}?cholerae|vibrio\p{Zs}?cholerae|t\.\p{Zs}?thermophila|tetrahymena\p{Zs}?thermophila|c\.\p{Zs}?reinhardtii|chlamydomonas\p{Zs}?reinhardtii|n\.\p{Zs}?attenuata|nicotiana\p{Zs}?attenuata|e\.\p{Zs}?carotovora|erwinia\p{Zs}?carotovora|e\.\p{Zs}?faecalis|h\.\p{Zs}?sapiens|homo\p{Zs}?sapiens|c\.\p{Zs}?trachomatis|chlamydia\p{Zs}?trachomatis|enterococcus\p{Zs}?faecalis|x\.\p{Zs}?laevis|xenopus\p{Zs}?laevis|x\.\p{Zs}?tropicalis|xenopus\p{Zs}?tropicalis|m\.\p{Zs}?musculus|mus\p{Zs}?musculus|d\.\p{Zs}?immigrans|drosophila\p{Zs}?immigrans|d\.\p{Zs}?subobscura|drosophila\p{Zs}?subobscura|d\.\p{Zs}?affinis|drosophila\p{Zs}?affinis|d\.\p{Zs}?obscura|drosophila\p{Zs}?obscura|f\.\p{Zs}?tularensis|francisella\p{Zs}?tularensis|p\.\p{Zs}?plantaginis|podosphaera\p{Zs}?plantaginis|p\.\p{Zs}?lanceolata|plantago\p{Zs}?lanceolata|m\.\p{Zs}?trossulus|mytilus\p{Zs}?trossulus|m\.\p{Zs}?edulis|mytilus\p{Zs}?edulis|m\.\p{Zs}?chilensis|mytilus\p{Zs}?chilensis|u\.\p{Zs}?maydis|ustilago\p{Zs}?maydis|p\.\p{Zs}?knowlesi|plasmodium\p{Zs}?knowlesi|p\.\p{Zs}?aeruginosa|pseudomonas\p{Zs}?aeruginosa|t\.\p{Zs}?brucei|trypanosoma\p{Zs}?brucei|t\.\p{Zs}?gondii|toxoplasma\p{Zs}?gondii|d\.\p{Zs}?rerio|danio\p{Zs}?rerio|yimenosaurus|lesothosaurus\p{Zs}?diagnosticus|l\.\p{Zs}?diagnosticus|scelidosaurus\p{Zs}?harrisonii|s\.\p{Zs}?harrisonii|haya\p{Zs}?griva|h\.\p{Zs}?griva|polacanthus\p{Zs}?foxii|p\.\p{Zs}?foxii|scutellosaurus\p{Zs}?lawleri|s\.\p{Zs}?lawleri|saichania\p{Zs}?chulsanensis|s\.\p{Zs}?chulsanensis|gargoyleosaurus\p{Zs}?parkpinorum|g\.\p{Zs}?parkpinorum|europelta\p{Zs}?carbonensis|e\.\p{Zs}?carbonensis|stegosaurus\p{Zs}?stenops|s\.\p{Zs}?stenops|pinacosaurus\p{Zs}?grangeri|p\.\p{Zs}?grangeri|tatisaurus\p{Zs}?oehleri|t\.\p{Zs}?oehleri|hungarosaurus\p{Zs}?tormai|h\.\p{Zs}?tormai|bienosaurus\p{Zs}?lufengensis|b\.\p{Zs}?lufengensis|fabrosaurus\p{Zs}?australis|f\.\p{Zs}?australis|chinshakiangosaurus\p{Zs}?chunghoensis|c\.\p{Zs}?chunghoensis|euoplocephalus\p{Zs}?tutus|e\.\p{Zs}?tutus|drosophila|xenopus|salmonella|g\.\p{Zs}?beringei|gorilla\p{Zs}?beringei|m\.\p{Zs}?assamensis|macaca\p{Zs}?assamensis|m\.\p{Zs}?fuscata|macaca\p{Zs}?fuscata|m\.\p{Zs}?mulatta|macaca\p{Zs}?mulatta|m\.\p{Zs}?nemestrina|macaca\p{Zs}?nemestrina|m\.\p{Zs}?sphinx|mandrillus\p{Zs}?sphinx|p\.\p{Zs}?anubis|papio\p{Zs}?anubis|p\.\p{Zs}?hamadryas|papio\p{Zs}?hamadryas|p\.\p{Zs}?paniscus|pan\p{Zs}?paniscus|p\.\p{Zs}?troglodytes|pan\p{Zs}?troglodytes'"/>
+  <let name="sec-title-regex" value="string-join(     for $x in tokenize($org-regex,'\|')     return concat('^',$x,'$')     ,'|')"/>
+  <xsl:function name="e:org-conform" as="xs:string">
+  <xsl:param name="s" as="xs:string"/>
+  <xsl:choose>
+    <xsl:when test="matches($s,'b\.\p{Zs}?subtilis')">
+      <xsl:value-of select="'B. subtilis'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'bacillus\p{Zs}?subtilis')">
+      <xsl:value-of select="'Bacillus subtilis'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'d\.\p{Zs}?melanogaster')">
+      <xsl:value-of select="'D. melanogaster'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'drosophila\p{Zs}?melanogaster')">
+      <xsl:value-of select="'Drosophila melanogaster'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'e\.\p{Zs}?coli')">
+      <xsl:value-of select="'E. coli'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'escherichia\p{Zs}?coli')">
+      <xsl:value-of select="'Escherichia coli'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'s\.\p{Zs}?pombe')">
+      <xsl:value-of select="'S. pombe'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'schizosaccharomyces\p{Zs}?pombe')">
+      <xsl:value-of select="'Schizosaccharomyces pombe'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'s\.\p{Zs}?cerevisiae')">
+      <xsl:value-of select="'S. cerevisiae'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'saccharomyces\p{Zs}?cerevisiae')">
+      <xsl:value-of select="'Saccharomyces cerevisiae'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'c\.\p{Zs}?elegans')">
+      <xsl:value-of select="'C. elegans'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'caenorhabditis\p{Zs}?elegans')">
+      <xsl:value-of select="'Caenorhabditis elegans'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'a\.\p{Zs}?thaliana')">
+      <xsl:value-of select="'A. thaliana'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'arabidopsis\p{Zs}?thaliana')">
+      <xsl:value-of select="'Arabidopsis thaliana'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'m\.\p{Zs}?thermophila')">
+      <xsl:value-of select="'M. thermophila'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'myceliophthora\p{Zs}?thermophila')">
+      <xsl:value-of select="'Myceliophthora thermophila'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'dictyostelium')">
+      <xsl:value-of select="'Dictyostelium'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'p\.\p{Zs}?falciparum')">
+      <xsl:value-of select="'P. falciparum'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'plasmodium\p{Zs}?falciparum')">
+      <xsl:value-of select="'Plasmodium falciparum'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'s\.\p{Zs}?enterica')">
+      <xsl:value-of select="'S. enterica'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'salmonella\p{Zs}?enterica')">
+      <xsl:value-of select="'Salmonella enterica'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'s\.\p{Zs}?pyogenes')">
+      <xsl:value-of select="'S. pyogenes'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'streptococcus\p{Zs}?pyogenes')">
+      <xsl:value-of select="'Streptococcus pyogenes'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'p\.\p{Zs}?dumerilii')">
+      <xsl:value-of select="'P. dumerilii'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'platynereis\p{Zs}?dumerilii')">
+      <xsl:value-of select="'Platynereis dumerilii'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'p\.\p{Zs}?cynocephalus')">
+      <xsl:value-of select="'P. cynocephalus'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'papio\p{Zs}?cynocephalus')">
+      <xsl:value-of select="'Papio cynocephalus'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'o\.\p{Zs}?fasciatus')">
+      <xsl:value-of select="'O. fasciatus'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'oncopeltus\p{Zs}?fasciatus')">
+      <xsl:value-of select="'Oncopeltus fasciatus'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'n\.\p{Zs}?crassa')">
+      <xsl:value-of select="'N. crassa'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'neurospora\p{Zs}?crassa')">
+      <xsl:value-of select="'Neurospora crassa'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'c\.\p{Zs}?intestinalis')">
+      <xsl:value-of select="'C. intestinalis'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'ciona\p{Zs}?intestinalis')">
+      <xsl:value-of select="'Ciona intestinalis'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'e\.\p{Zs}?cuniculi')">
+      <xsl:value-of select="'E. cuniculi'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'encephalitozoon\p{Zs}?cuniculi')">
+      <xsl:value-of select="'Encephalitozoon cuniculi'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'h\.\p{Zs}?salinarum')">
+      <xsl:value-of select="'H. salinarum'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'halobacterium\p{Zs}?salinarum')">
+      <xsl:value-of select="'Halobacterium salinarum'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'s\.\p{Zs}?solfataricus')">
+      <xsl:value-of select="'S. solfataricus'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'sulfolobus\p{Zs}?solfataricus')">
+      <xsl:value-of select="'Sulfolobus solfataricus'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'s\.\p{Zs}?mediterranea')">
+      <xsl:value-of select="'S. mediterranea'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'schmidtea\p{Zs}?mediterranea')">
+      <xsl:value-of select="'Schmidtea mediterranea'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'s\.\p{Zs}?rosetta')">
+      <xsl:value-of select="'S. rosetta'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'salpingoeca\p{Zs}?rosetta')">
+      <xsl:value-of select="'Salpingoeca rosetta'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'n\.\p{Zs}?vectensis')">
+      <xsl:value-of select="'N. vectensis'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'nematostella\p{Zs}?vectensis')">
+      <xsl:value-of select="'Nematostella vectensis'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'s\.\p{Zs}?aureus')">
+      <xsl:value-of select="'S. aureus'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'staphylococcus\p{Zs}?aureus')">
+      <xsl:value-of select="'Staphylococcus aureus'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'v\.\p{Zs}?cholerae')">
+      <xsl:value-of select="'V. cholerae'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'vibrio\p{Zs}?cholerae')">
+      <xsl:value-of select="'Vibrio cholerae'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'t\.\p{Zs}?thermophila')">
+      <xsl:value-of select="'T. thermophila'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'tetrahymena\p{Zs}?thermophila')">
+      <xsl:value-of select="'Tetrahymena thermophila'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'c\.\p{Zs}?reinhardtii')">
+      <xsl:value-of select="'C. reinhardtii'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'chlamydomonas\p{Zs}?reinhardtii')">
+      <xsl:value-of select="'Chlamydomonas reinhardtii'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'n\.\p{Zs}?attenuata')">
+      <xsl:value-of select="'N. attenuata'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'nicotiana\p{Zs}?attenuata')">
+      <xsl:value-of select="'Nicotiana attenuata'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'e\.\p{Zs}?carotovora')">
+      <xsl:value-of select="'E. carotovora'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'erwinia\p{Zs}?carotovora')">
+      <xsl:value-of select="'Erwinia carotovora'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'e\.\p{Zs}?faecalis')">
+      <xsl:value-of select="'E. faecalis'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'h\.\p{Zs}?sapiens')">
+      <xsl:value-of select="'H. sapiens'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'homo\p{Zs}?sapiens')">
+      <xsl:value-of select="'Homo sapiens'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'c\.\p{Zs}?trachomatis')">
+      <xsl:value-of select="'C. trachomatis'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'chlamydia\p{Zs}?trachomatis')">
+      <xsl:value-of select="'Chlamydia trachomatis'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'enterococcus\p{Zs}?faecalis')">
+      <xsl:value-of select="'Enterococcus faecalis'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'x\.\p{Zs}?laevis')">
+      <xsl:value-of select="'X. laevis'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'xenopus\p{Zs}?laevis')">
+      <xsl:value-of select="'Xenopus laevis'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'x\.\p{Zs}?tropicalis')">
+      <xsl:value-of select="'X. tropicalis'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'xenopus\p{Zs}?tropicalis')">
+      <xsl:value-of select="'Xenopus tropicalis'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'m\.\p{Zs}?musculus')">
+      <xsl:value-of select="'M. musculus'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'mus\p{Zs}?musculus')">
+      <xsl:value-of select="'Mus musculus'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'d\.\p{Zs}?immigrans')">
+      <xsl:value-of select="'D. immigrans'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'drosophila\p{Zs}?immigrans')">
+      <xsl:value-of select="'Drosophila immigrans'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'d\.\p{Zs}?subobscura')">
+      <xsl:value-of select="'D. subobscura'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'drosophila\p{Zs}?subobscura')">
+      <xsl:value-of select="'Drosophila subobscura'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'d\.\p{Zs}?affinis')">
+      <xsl:value-of select="'D. affinis'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'drosophila\p{Zs}?affinis')">
+      <xsl:value-of select="'Drosophila affinis'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'d\.\p{Zs}?obscura')">
+      <xsl:value-of select="'D. obscura'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'drosophila\p{Zs}?obscura')">
+      <xsl:value-of select="'Drosophila obscura'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'f\.\p{Zs}?tularensis')">
+      <xsl:value-of select="'F. tularensis'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'francisella\p{Zs}?tularensis')">
+      <xsl:value-of select="'Francisella tularensis'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'p\.\p{Zs}?plantaginis')">
+      <xsl:value-of select="'P. plantaginis'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'podosphaera\p{Zs}?plantaginis')">
+      <xsl:value-of select="'Podosphaera plantaginis'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'p\.\p{Zs}?lanceolata')">
+      <xsl:value-of select="'P. lanceolata'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'plantago\p{Zs}?lanceolata')">
+      <xsl:value-of select="'Plantago lanceolata'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'m\.\p{Zs}?trossulus')">
+      <xsl:value-of select="'M. trossulus'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'mytilus\p{Zs}?trossulus')">
+      <xsl:value-of select="'Mytilus trossulus'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'m\.\p{Zs}?edulis')">
+      <xsl:value-of select="'M. edulis'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'mytilus\p{Zs}?edulis')">
+      <xsl:value-of select="'Mytilus edulis'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'m\.\p{Zs}?chilensis')">
+      <xsl:value-of select="'M. chilensis'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'mytilus\p{Zs}?chilensis')">
+      <xsl:value-of select="'Mytilus chilensis'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'u\.\p{Zs}?maydis')">
+      <xsl:value-of select="'U. maydis'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'ustilago\p{Zs}?maydis')">
+      <xsl:value-of select="'Ustilago maydis'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'p\.\p{Zs}?knowlesi')">
+      <xsl:value-of select="'P. knowlesi'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'plasmodium\p{Zs}?knowlesi')">
+      <xsl:value-of select="'Plasmodium knowlesi'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'p\.\p{Zs}?aeruginosa')">
+      <xsl:value-of select="'P. aeruginosa'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'pseudomonas\p{Zs}?aeruginosa')">
+      <xsl:value-of select="'Pseudomonas aeruginosa'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'t\.\p{Zs}?brucei')">
+      <xsl:value-of select="'T. brucei'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'trypanosoma\p{Zs}?brucei')">
+      <xsl:value-of select="'Trypanosoma brucei'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'caulobacter\p{Zs}?crescentus')">
+      <xsl:value-of select="'Caulobacter crescentus'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'c\.\p{Zs}?crescentus')">
+      <xsl:value-of select="'C. crescentus'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'agrobacterium\p{Zs}?tumefaciens')">
+      <xsl:value-of select="'Agrobacterium tumefaciens'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'a\.\p{Zs}?tumefaciens')">
+      <xsl:value-of select="'A. tumefaciens'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'t\.\p{Zs}?gondii')">
+      <xsl:value-of select="'T. gondii'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'toxoplasma\p{Zs}?gondii')">
+      <xsl:value-of select="'Toxoplasma gondii'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'d\.\p{Zs}?rerio')">
+      <xsl:value-of select="'D. rerio'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'danio\p{Zs}?rerio')">
+      <xsl:value-of select="'Danio rerio'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'drosophila')">
+      <xsl:value-of select="'Drosophila'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'yimenosaurus')">
+      <xsl:value-of select="'Yimenosaurus'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'lesothosaurus\p{Zs}?diagnosticus')">
+      <xsl:value-of select="'Lesothosaurus diagnosticus'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'l.\p{Zs}?diagnosticus')">
+      <xsl:value-of select="'L. diagnosticus'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'scelidosaurus\p{Zs}?harrisonii')">
+      <xsl:value-of select="'Scelidosaurus harrisonii'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'s.\p{Zs}?harrisonii')">
+      <xsl:value-of select="'S. harrisonii'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'haya\p{Zs}?griva')">
+      <xsl:value-of select="'Haya griva'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'h.\p{Zs}?griva')">
+      <xsl:value-of select="'H. griva'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'polacanthus\p{Zs}?foxii')">
+      <xsl:value-of select="'Polacanthus foxii'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'p.\p{Zs}?foxii')">
+      <xsl:value-of select="'P. foxii'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'scutellosaurus\p{Zs}?lawleri')">
+      <xsl:value-of select="'Scutellosaurus lawleri'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'s.\p{Zs}?lawleri')">
+      <xsl:value-of select="'S. lawleri'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'saichania\p{Zs}?chulsanensis')">
+      <xsl:value-of select="'Saichania chulsanensis'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'s.\p{Zs}?chulsanensis')">
+      <xsl:value-of select="'S. chulsanensis'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'gargoyleosaurus\p{Zs}?parkpinorum')">
+      <xsl:value-of select="'Gargoyleosaurus parkpinorum'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'g.\p{Zs}?parkpinorum')">
+      <xsl:value-of select="'G. parkpinorum'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'europelta\p{Zs}?carbonensis')">
+      <xsl:value-of select="'Europelta carbonensis'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'e.\p{Zs}?carbonensis')">
+      <xsl:value-of select="'E. carbonensis'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'stegosaurus\p{Zs}?stenops')">
+      <xsl:value-of select="'Stegosaurus stenops'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'s.\p{Zs}?stenops')">
+      <xsl:value-of select="'S. stenops'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'pinacosaurus\p{Zs}?grangeri')">
+      <xsl:value-of select="'Pinacosaurus grangeri'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'p.\p{Zs}?grangeri')">
+      <xsl:value-of select="'P. grangeri'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'tatisaurus\p{Zs}?oehleri')">
+      <xsl:value-of select="'Tatisaurus oehleri'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'t.\p{Zs}?oehleri')">
+      <xsl:value-of select="'T. oehleri'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'hungarosaurus\p{Zs}?tormai')">
+      <xsl:value-of select="'Hungarosaurus tormai'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'h.\p{Zs}?tormai')">
+      <xsl:value-of select="'H. tormai'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'lesothosaurus\p{Zs}?diagnosticus')">
+      <xsl:value-of select="'Lesothosaurus diagnosticus'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'l.\p{Zs}?diagnosticus')">
+      <xsl:value-of select="'L. diagnosticus'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'bienosaurus\p{Zs}?lufengensis')">
+      <xsl:value-of select="'Bienosaurus lufengensis'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'b.\p{Zs}?lufengensis')">
+      <xsl:value-of select="'B. lufengensis'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'fabrosaurus\p{Zs}?australis')">
+      <xsl:value-of select="'Fabrosaurus australis'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'f.\p{Zs}?australis')">
+      <xsl:value-of select="'F. australis'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'chinshakiangosaurus\p{Zs}?chunghoensis')">
+      <xsl:value-of select="'Chinshakiangosaurus chunghoensis'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'c.\p{Zs}?chunghoensis')">
+      <xsl:value-of select="'C. chunghoensis'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'euoplocephalus\p{Zs}?tutus')">
+      <xsl:value-of select="'Euoplocephalus tutus'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'e.\p{Zs}?tutus')">
+      <xsl:value-of select="'E. tutus'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'g\.\p{Zs}?beringei')">
+      <xsl:value-of select="'G. beringei'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'gorilla\p{Zs}?beringei')">
+      <xsl:value-of select="'Gorilla beringei'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'m\.\p{Zs}?assamensis')">
+      <xsl:value-of select="'M. assamensis'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'macaca\p{Zs}?assamensis')">
+      <xsl:value-of select="'Macaca assamensis'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'m\.\p{Zs}?fuscata')">
+      <xsl:value-of select="'M. fuscata'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'macaca\p{Zs}?fuscata')">
+      <xsl:value-of select="'Macaca fuscata'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'m\.\p{Zs}?mulatta')">
+      <xsl:value-of select="'M. mulatta'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'macaca\p{Zs}?mulatta')">
+      <xsl:value-of select="'Macaca mulatta'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'m\.\p{Zs}?nemestrina')">
+      <xsl:value-of select="'M. nemestrina'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'macaca\p{Zs}?nemestrina')">
+      <xsl:value-of select="'Macaca nemestrina'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'m\.\p{Zs}?sphinx')">
+      <xsl:value-of select="'M. sphinx'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'mandrillus\p{Zs}?sphinx')">
+      <xsl:value-of select="'Mandrillus sphinx'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'p\.\p{Zs}?anubis')">
+      <xsl:value-of select="'P. anubis'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'papio\p{Zs}?anubis')">
+      <xsl:value-of select="'Papio anubis'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'p\.\p{Zs}?hamadryas')">
+      <xsl:value-of select="'P. hamadryas'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'papio\p{Zs}?hamadryas')">
+      <xsl:value-of select="'Papio hamadryas'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'p\.\p{Zs}?paniscus')">
+      <xsl:value-of select="'P. paniscus'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'pan\p{Zs}?paniscus')">
+      <xsl:value-of select="'Pan paniscus'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'p\.\p{Zs}?troglodytes')">
+      <xsl:value-of select="'P. troglodytes'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'pan\p{Zs}?troglodytes')">
+      <xsl:value-of select="'Pan troglodytes'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'xenopus')">
+      <xsl:value-of select="'Xenopus'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'salmonella')">
+      <xsl:value-of select="'Salmonella'"/>
+    </xsl:when>
+    <xsl:otherwise>
+      <xsl:value-of select="'undefined'"/>
+    </xsl:otherwise>
+  </xsl:choose>
+</xsl:function>
+  <xsl:function name="e:code-check">
+    <xsl:param name="s" as="xs:string"/>
+    <xsl:element name="code">
+      <xsl:if test="contains($s,'github')">
+        <xsl:element name="match">
+        <xsl:value-of select="'github '"/>
+        </xsl:element>
+      </xsl:if>
+      <xsl:if test="contains($s,'gitlab')">
+        <xsl:element name="match">
+        <xsl:value-of select="'gitlab '"/>
+        </xsl:element>
+      </xsl:if>
+      <xsl:if test="contains($s,'git.exeter.ac.uk')">
+        <xsl:element name="match">
+          <xsl:value-of select="'git.exeter.ac.uk '"/>
+        </xsl:element>
+      </xsl:if>
+      <xsl:if test="contains($s,'codeplex')">
+        <xsl:element name="match">
+        <xsl:value-of select="'codeplex '"/>
+        </xsl:element>
+      </xsl:if>
+      <xsl:if test="contains($s,'sourceforge')">
+        <xsl:element name="match">
+        <xsl:value-of select="'sourceforge '"/>
+        </xsl:element>
+      </xsl:if>
+      <xsl:if test="contains($s,'bitbucket')">
+        <xsl:element name="match">
+        <xsl:value-of select="'bitbucket '"/>
+        </xsl:element>
+      </xsl:if>
+      <xsl:if test="contains($s,'assembla ')">
+        <xsl:element name="match">
+        <xsl:value-of select="'assembla '"/>
+        </xsl:element>
+      </xsl:if>
+    </xsl:element>
+  </xsl:function>
+  <xsl:function name="e:get-xrefs">
+    <xsl:param name="article"/>
+    <xsl:param name="object-id"/>
+    <xsl:param name="object-type"/>
+    <xsl:variable name="object-no" select="replace($object-id,'[^0-9]','')"/>
+    <xsl:element name="matches">
+      <xsl:for-each select="$article//xref[(@ref-type=$object-type) and not(ancestor::caption)]">
+        <xsl:variable name="rid-no" select="replace(./@rid,'[^0-9]','')"/>
+        <xsl:variable name="text-no" select="tokenize(normalize-space(replace(.,'[^0-9]',' ')),'\p{Zs}')[last()]"/>
+        <xsl:choose>
+          <xsl:when test="./@rid = $object-id">
+            <xsl:element name="match">
+              <xsl:attribute name="sec-id">
+                <xsl:value-of select="./ancestor::sec[1]/@id"/>
+              </xsl:attribute>
+              <xsl:value-of select="self::*"/>
+            </xsl:element>
+          </xsl:when>
+          <xsl:when test="contains(./@rid,'app')"/>
+          <xsl:when test="($rid-no lt $object-no) and (./following-sibling::text()[1] = '–') and (./following-sibling::*[1]/name()='xref') and (number(replace(replace(./following-sibling::xref[1]/@rid,'\-','.'),'[a-z]','')) gt number($object-no))">
+            <xsl:element name="match">
+              <xsl:attribute name="sec-id">
+                <xsl:value-of select="./ancestor::sec[1]/@id"/>
+              </xsl:attribute>
+              <xsl:value-of select="self::*"/>
+            </xsl:element>
+          </xsl:when>
+          <xsl:when test="($rid-no lt $object-no) and contains(.,$object-no) and (contains(.,'Videos') or contains(.,'videos') and contains(.,'–'))">
+            <xsl:element name="match">
+              <xsl:attribute name="sec-id">
+                <xsl:value-of select="./ancestor::sec[1]/@id"/>
+              </xsl:attribute>
+              <xsl:value-of select="self::*"/>
+            </xsl:element>
+          </xsl:when>
+          <xsl:when test="($rid-no lt $object-no) and (contains(.,'Videos') or contains(.,'videos') and contains(.,'—')) and ($text-no gt $object-no)">
+            <xsl:element name="match">
+              <xsl:attribute name="sec-id">
+                <xsl:value-of select="./ancestor::sec[1]/@id"/>
+              </xsl:attribute>
+              <xsl:value-of select="self::*"/>
+            </xsl:element>
+          </xsl:when>
+          <xsl:otherwise/>
+        </xsl:choose>
+      </xsl:for-each>
+    </xsl:element>
+  </xsl:function>
+  <xsl:function name="e:get-iso-pub-date">
+    <xsl:param name="element"/>
+    <xsl:choose>
+      <xsl:when test="$element/ancestor-or-self::article//article-meta/pub-date[(@date-type='publication') or (@date-type='pub')]/month">
+        <xsl:variable name="pub-date" select="$element/ancestor-or-self::article//article-meta/pub-date[(@date-type='publication') or (@date-type='pub')]"/>
+        <xsl:value-of select="concat($pub-date/year,'-',$pub-date/month,'-',$pub-date/day)"/>
+      </xsl:when>
+      <xsl:otherwise/>
+    </xsl:choose>
+  </xsl:function>
+  <xsl:function name="e:get-copyright-holder">
+    <xsl:param name="contrib-group"/>
+    <xsl:variable name="author-count" select="count($contrib-group/contrib[@contrib-type='author'])"/>
+    <xsl:choose>
+      <xsl:when test="$author-count lt 1"/>
+      <xsl:when test="$author-count = 1">
+        <xsl:choose>
+          <xsl:when test="$contrib-group/contrib[@contrib-type='author']/collab">
+            <xsl:value-of select="$contrib-group/contrib[@contrib-type='author']/collab[1]/text()[1]"/>
+          </xsl:when>
+          <xsl:otherwise>
+            <xsl:value-of select="$contrib-group/contrib[@contrib-type='author']/name[1]/surname[1]"/>
+          </xsl:otherwise>
+        </xsl:choose>
+      </xsl:when>
+      <xsl:when test="$author-count = 2">
+        <xsl:choose>
+          <xsl:when test="$contrib-group/contrib[@contrib-type='author']/collab">
+            <xsl:choose>
+              <xsl:when test="$contrib-group/contrib[@contrib-type='author'][1]/collab and $contrib-group/contrib[@contrib-type='author'][2]/collab">
+                <xsl:value-of select="concat($contrib-group/contrib[@contrib-type='author']/collab[1]/text()[1],' and ',$contrib-group/contrib[@contrib-type='author']/collab[2]/text()[1])"/>
+              </xsl:when>
+              <xsl:when test="$contrib-group/contrib[@contrib-type='author'][1]/collab">
+                <xsl:value-of select="concat($contrib-group/contrib[@contrib-type='author'][1]/collab[1]/text()[1],' and ',$contrib-group/contrib[@contrib-type='author'][2]/name[1]/surname[1])"/>
+              </xsl:when>
+              <xsl:otherwise>
+                <xsl:value-of select="concat($contrib-group/contrib[@contrib-type='author'][1]/name[1]/surname[1],' and ',$contrib-group/contrib[@contrib-type='author'][2]/collab[1]/text()[1])"/>
+              </xsl:otherwise>
+            </xsl:choose>
+          </xsl:when>
+          <xsl:otherwise>
+            <xsl:value-of select="concat($contrib-group/contrib[@contrib-type='author'][1]/name[1]/surname[1],' and ',$contrib-group/contrib[@contrib-type='author'][2]/name[1]/surname[1])"/>
+          </xsl:otherwise>
+        </xsl:choose>
+      </xsl:when>
+      
+      <xsl:otherwise>
+        <xsl:variable name="is-equal-contrib" select="if ($contrib-group/contrib[@contrib-type='author'][1]/@equal-contrib='yes') then true() else false()"/>
+        <xsl:choose>
+          <xsl:when test="$is-equal-contrib">
+            
+            <xsl:variable name="equal-contrib-rid" select="$contrib-group/contrib[@contrib-type='author'][1]/xref[starts-with(@rid,'equal-contrib')]/@rid"/>
+            <xsl:variable name="first-authors" select="$contrib-group/contrib[@contrib-type='author' and @equal-contrib='yes' and xref[@rid=$equal-contrib-rid] and not(preceding-sibling::contrib[not(xref[@rid=$equal-contrib-rid])])]"/>
+            <xsl:choose>
+              
+              <xsl:when test="$author-count = 3 and count($first-authors) = 3">
+                <xsl:value-of select="concat(e:get-surname($contrib-group/contrib[@contrib-type='author'][1]),                   ', ',                   e:get-surname($contrib-group/contrib[@contrib-type='author'][2]),                   ' and ',                   e:get-surname($contrib-group/contrib[@contrib-type='author'][3]))"/>
+              </xsl:when>
+              
+              <xsl:when test="count($first-authors) gt 3">
+                <xsl:variable name="first-auth-string" select="string-join(for $auth in $contrib-group/contrib[@contrib-type='author'][position() lt 4] return e:get-surname($auth),', ')"/>
+                <xsl:value-of select="concat($first-auth-string,' et al')"/>
+              </xsl:when>
+              
+              <xsl:otherwise>
+                <xsl:variable name="first-auth-string" select="string-join(for $auth in $first-authors return e:get-surname($auth),', ')"/>
+                <xsl:value-of select="concat($first-auth-string,' et al')"/>
+              </xsl:otherwise>
+            </xsl:choose>
+          </xsl:when>
+          
+          <xsl:otherwise>
+            <xsl:value-of select="concat(e:get-surname($contrib-group/contrib[@contrib-type='author'][1]),' et al')"/>
+          </xsl:otherwise>
+        </xsl:choose>
+      </xsl:otherwise>
+    </xsl:choose>
+  </xsl:function>
+  <xsl:function name="e:get-surname" as="text()">
+    <xsl:param name="contrib"/>
+    <xsl:choose>
+      <xsl:when test="$contrib/collab">
+        <xsl:value-of select="$contrib/collab[1]/text()[1]"/>
+      </xsl:when>
+      <xsl:otherwise>
+        <xsl:value-of select="$contrib//name[1]/surname[1]"/>
+      </xsl:otherwise>
+    </xsl:choose>
+  </xsl:function>
+  <xsl:function name="e:insight-box" as="element()">
+    <xsl:param name="box" as="xs:string"/>
+    <xsl:param name="cite-text" as="xs:string"/>
+    <xsl:variable name="box-text" select="substring-after(substring-after($box,'article'),' ')"/> 
+    
+    <xsl:element name="list">
+      <xsl:for-each select="tokenize($cite-text,'\p{Zs}')">
+        <xsl:choose>
+          <xsl:when test="contains($box-text,.)"/>
+          <xsl:otherwise>
+            <xsl:element name="item">
+              <xsl:attribute name="type">cite</xsl:attribute>
+              <xsl:value-of select="."/>
+            </xsl:element>
+          </xsl:otherwise>
+        </xsl:choose>
+      </xsl:for-each>
+      <xsl:for-each select="tokenize($box-text,'\p{Zs}')">
+        <xsl:choose>
+          <xsl:when test="contains($cite-text,.)"/>
+          <xsl:otherwise>
+            <xsl:element name="item">
+              <xsl:attribute name="type">box</xsl:attribute>
+              <xsl:value-of select="."/>
+            </xsl:element>
+          </xsl:otherwise>
+        </xsl:choose>
+      </xsl:for-each>
+    </xsl:element>
+  </xsl:function>
+  <let name="latin-regex" value="'in\p{Zs}+vitro|ex\p{Zs}+vitro|in\p{Zs}+vivo|ex\p{Zs}+vivo|a\p{Zs}+priori|a\p{Zs}+posteriori|de\p{Zs}+novo|in\p{Zs}+utero|in\p{Zs}+natura|in\p{Zs}+situ|in\p{Zs}+planta|in\p{Zs}+cellulo|rete\p{Zs}+mirabile|nomen\p{Zs}+novum| sensu |ad\p{Zs}+libitum|in\p{Zs}+ovo'"/>
+  <xsl:function name="e:get-latin-terms" as="element()">
+    <xsl:param name="article" as="element()"/>
+    <xsl:param name="regex" as="xs:string"/>
+    
+    <xsl:variable name="roman-text" select="lower-case(       string-join(for $x in $article/*[local-name() = 'body' or local-name() = 'back']//*       return       if ($x/ancestor-or-self::sec[@sec-type='additional-information']) then ()       else if ($x/ancestor-or-self::ref-list) then ()       else if ($x/local-name() = 'italic') then ()       else $x/text(),' '))"/>
+    <xsl:variable name="italic-text" select="lower-case(string-join($article//*:italic[not(ancestor::ref-list) and not(ancestor::sec[@sec-type='additional-information'])],' '))"/>
+    
+    
+    <xsl:element name="result">
+      <xsl:choose>
+        <xsl:when test="matches($roman-text,$regex)">
+          <xsl:element name="list">
+            <xsl:attribute name="list-type">roman</xsl:attribute>
+            <xsl:for-each select="tokenize($regex,'\|')">
+              <xsl:variable name="display" select="replace(replace(.,'\\p\{Zs\}\+',' '),'^ | $','')"/>
+              <xsl:element name="match">
+                <xsl:attribute name="count">
+                  <xsl:value-of select="count(tokenize($roman-text,.)) - 1"/>
+                </xsl:attribute>
+                <xsl:value-of select="$display"/>
+              </xsl:element>
+            </xsl:for-each>
+          </xsl:element>
+        </xsl:when>
+        <xsl:otherwise>
+          <xsl:element name="list">
+            <xsl:attribute name="list-type">roman</xsl:attribute>
+          </xsl:element>
+        </xsl:otherwise>
+      </xsl:choose>
+      <xsl:choose>
+        <xsl:when test="matches($italic-text,$regex)">
+          <xsl:element name="list">
+            <xsl:attribute name="list-type">italic</xsl:attribute>
+            <xsl:for-each select="tokenize($regex,'\|')">
+              <xsl:variable name="display" select="replace(.,'\\p\{Zs\}\+',' ')"/>
+              <xsl:element name="match">
+                <xsl:attribute name="count">
+                  <xsl:value-of select="count(tokenize($italic-text,.)) - 1"/>
+                </xsl:attribute>
+                <xsl:value-of select="$display"/>
+              </xsl:element>
+            </xsl:for-each>
+          </xsl:element>
+        </xsl:when>
+        <xsl:otherwise>
+          <xsl:element name="list">
+            <xsl:attribute name="list-type">italic</xsl:attribute>
+          </xsl:element>
+        </xsl:otherwise>
+      </xsl:choose>
+    </xsl:element>
+  </xsl:function>
+  <xsl:function name="e:print-latin-terms" as="xs:string">
+    <xsl:param name="list" as="element()"/>
+    <xsl:value-of select="string-join(       for $term in $list//*:match[@count != '0']        return if (number($term/@count) gt 1) then concat($term/@count,' instances of ',$term)       else concat($term/@count,' instance of ',$term)       ,', ')"/>
+  </xsl:function>
+  <xsl:function name="e:list-panels">
+    <xsl:param name="caption" as="xs:string"/>
+    <xsl:element name="list">
+      <xsl:for-each select="tokenize($caption,'\.\p{Zs}+')">
+        <xsl:if test="matches(.,'^[B-K]\p{P}?[A-K]?\.?\p{Zs}+')">
+          <xsl:element name="item">
+            <xsl:attribute name="token">
+              <xsl:value-of select="substring-before(.,' ')"/>
+            </xsl:attribute>
+            <xsl:value-of select="."/>
+          </xsl:element>
+        </xsl:if>
+      </xsl:for-each>
+    </xsl:element>
+  </xsl:function>
+  <xsl:function name="e:get-weekday" as="xs:integer?">
+    <xsl:param name="date" as="xs:anyAtomicType?"/>
+    <xsl:sequence select="       if (empty($date)) then ()       else xs:integer((xs:date($date) - xs:date('1901-01-06')) div xs:dayTimeDuration('P1D')) mod 7       "/>
+  </xsl:function>
+  <xsl:function name="e:line-count" as="xs:integer">
+    <xsl:param name="arg" as="xs:string?"/>
+    
+    <xsl:sequence select="count(tokenize($arg,'(\r\n?|\n\r?)'))"/>
+    
+  </xsl:function>
+  <pattern id="article-metadata">
+    <rule context="pub-date/*" id="pub-date-child-tests">
+      <let name="allowed-children" value="('day','month','year')"/>
+      <assert test="name()=$allowed-children" role="error" id="pub-date-child-test-1">
+        <value-of select="name()"/> is not allowed as a child of pub-date. The only permitted elements are <value-of select="string-join($allowed-children,'; ')"/>.</assert>
+    </rule>
+  </pattern>
+  <pattern id="root-pattern">
+    <rule context="root" id="root-rule">
+      <assert test="descendant::pub-date/*" role="error" id="pub-date-child-tests-xspec-assert">pub-date/* must be present.</assert>
+    </rule>
+  </pattern>
+</schema>
\ No newline at end of file
diff --git a/test/tests/gen/pub-date-tests/pub-date-test-1/fail.xml b/test/tests/gen/pub-date-tests/pub-date-test-1/fail.xml
new file mode 100644
index 0000000000..1f3a1ddcdd
--- /dev/null
+++ b/test/tests/gen/pub-date-tests/pub-date-test-1/fail.xml
@@ -0,0 +1,15 @@
+<?oxygen SCHSchema="pub-date-test-1.sch"?>
+<!--Context: pub-date
+Test: assert    parent::article-meta
+Message: pub-date can only be a child of article-meta. This one is a child of  -->
+<root xmlns:ali="http://www.niso.org/schemas/ali/1.0/" xmlns:mml="http://www.w3.org/1998/Math/MathML" xmlns:xlink="http://www.w3.org/1999/xlink">
+    <article>
+        <front-stub>
+            <pub-date publication-format="electronic" date-type="publication">
+                <day>22</day>
+                <month>10</month>
+                <year>2023</year>
+            </pub-date>
+        </front-stub>
+    </article>
+</root>
\ No newline at end of file
diff --git a/test/tests/gen/pub-date-tests/pub-date-test-1/pass.xml b/test/tests/gen/pub-date-tests/pub-date-test-1/pass.xml
new file mode 100644
index 0000000000..145f90eea1
--- /dev/null
+++ b/test/tests/gen/pub-date-tests/pub-date-test-1/pass.xml
@@ -0,0 +1,15 @@
+<?oxygen SCHSchema="pub-date-test-1.sch"?>
+<!--Context: pub-date
+Test: assert    parent::article-meta
+Message: pub-date can only be a child of article-meta. This one is a child of  -->
+<root xmlns:ali="http://www.niso.org/schemas/ali/1.0/" xmlns:mml="http://www.w3.org/1998/Math/MathML" xmlns:xlink="http://www.w3.org/1999/xlink">
+    <article>
+        <article-meta>
+            <pub-date publication-format="electronic" date-type="publication">
+                <day>22</day>
+                <month>10</month>
+                <year>2023</year>
+            </pub-date>
+        </article-meta>
+    </article>
+</root>
\ No newline at end of file
diff --git a/test/tests/gen/pub-date-tests/pub-date-test-1/pub-date-test-1.sch b/test/tests/gen/pub-date-tests/pub-date-test-1/pub-date-test-1.sch
new file mode 100644
index 0000000000..6536b1baaa
--- /dev/null
+++ b/test/tests/gen/pub-date-tests/pub-date-test-1/pub-date-test-1.sch
@@ -0,0 +1,1304 @@
+<schema xmlns="http://purl.oclc.org/dsdl/schematron" xmlns:xlink="http://www.w3.org/1999/xlink" xmlns:xsl="http://www.w3.org/1999/XSL/Transform" xmlns:java="http://www.java.com/" xmlns:file="java.io.File" xmlns:ali="http://www.niso.org/schemas/ali/1.0/" xmlns:mml="http://www.w3.org/1998/Math/MathML" queryBinding="xslt2">
+  <title>eLife Schematron</title>
+  <ns uri="http://www.niso.org/schemas/ali/1.0/" prefix="ali"/>
+  <ns uri="http://www.w3.org/XML/1998/namespace" prefix="xml"/>
+  <ns uri="http://www.w3.org/1999/xlink" prefix="xlink"/>
+  <ns uri="http://www.w3.org/2001/XInclude" prefix="xi"/>
+  <ns uri="http://www.w3.org/1998/Math/MathML" prefix="mml"/>
+  <ns uri="http://saxon.sf.net/" prefix="saxon"/>
+  <ns uri="http://purl.org/dc/terms/" prefix="dc"/>
+  <ns uri="http://www.w3.org/2001/XMLSchema" prefix="xs"/>
+  <ns uri="https://elifesciences.org/namespace" prefix="e"/>
+  <ns uri="java.io.File" prefix="file"/>
+  <ns uri="http://www.java.com/" prefix="java"/>
+  <let name="features-subj" value="('Feature Article', 'Insight', 'Editorial')"/>
+  <let name="features-article-types" value="('article-commentary','editorial','discussion')"/>
+  <let name="research-subj" value="('Research Article', 'Short Report', 'Tools and Resources', 'Research Advance', 'Registered Report', 'Replication Study', 'Research Communication', 'Correction', 'Retraction', 'Scientific Correspondence', 'Review Article')"/>
+  <let name="notice-article-types" value="('correction','retraction','expression-of-concern')"/>
+  <let name="notice-display-types" value="('Correction','Retraction','Expression of Concern')"/>
+  <let name="allowed-article-types" value="('research-article','review-article',$features-article-types, $notice-article-types)"/>
+  <let name="allowed-disp-subj" value="($research-subj, $features-subj)"/>
+  <let name="MSAs" value="('Biochemistry and Chemical Biology', 'Cancer Biology', 'Cell Biology', 'Chromosomes and Gene Expression', 'Computational and Systems Biology', 'Developmental Biology', 'Ecology', 'Epidemiology and Global Health', 'Evolutionary Biology', 'Genetics and Genomics', 'Medicine', 'Immunology and Inflammation', 'Microbiology and Infectious Disease', 'Neuroscience', 'Physics of Living Systems', 'Plant Biology', 'Stem Cells and Regenerative Medicine', 'Structural Biology and Molecular Biophysics')"/>
+  <let name="funders" value="'../../../../../src/funders.xml'"/>
+  <let name="wellcome-fundref-ids" value="('http://dx.doi.org/10.13039/100010269','http://dx.doi.org/10.13039/100004440')"/>
+  <xsl:function name="e:is-prc" as="xs:boolean">
+    <xsl:param name="elem" as="node()"/>
+    <xsl:choose>
+      <xsl:when test="$elem/name()='article'">
+        <xsl:value-of select="e:is-prc-helper($elem)"/>
+      </xsl:when>
+      <xsl:otherwise>
+        <xsl:value-of select="e:is-prc-helper($elem/ancestor::article[1])"/>
+      </xsl:otherwise>
+    </xsl:choose>
+  </xsl:function>
+  <xsl:function name="e:is-prc-helper" as="xs:boolean">
+    <xsl:param name="article" as="node()"/>
+    <xsl:choose>
+      <xsl:when test="$article//article-meta/custom-meta-group/custom-meta[meta-name='publishing-route']/meta-value='prc'">
+        <xsl:value-of select="true()"/>
+      </xsl:when>
+      <xsl:otherwise>
+        <xsl:value-of select="false()"/>
+      </xsl:otherwise>
+    </xsl:choose>
+  </xsl:function>
+  <xsl:function name="e:get-version" as="xs:string">
+    <xsl:param name="elem" as="node()"/>
+    <xsl:choose>
+      <xsl:when test="$elem/name()='article'">
+        <xsl:value-of select="e:get-version-helper($elem)"/>
+      </xsl:when>
+      <xsl:otherwise>
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+  <xsl:function name="e:get-version-helper" as="xs:string">
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+      <xsl:when test="$article//article-meta/custom-meta-group/custom-meta[meta-name='schema-version']/meta-value">
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+    <xsl:param name="s" as="xs:string"/>
+    <xsl:choose>
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+      <xsl:when test="lower-case($s)='protein kinase a'">
+        <xsl:value-of select="'Protein Kinase A'"/>
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+    <xsl:choose>
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+        <xsl:value-of select="'undefined'"/>
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+    <xsl:choose>
+      <xsl:when test="$s = 'intro'">
+        <xsl:value-of select="'Introduction'"/>
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+      <xsl:when test="$s = 'supplementary-material'">
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+        <xsl:value-of select="concat(           e:get-collab-or-surname($ref/element-citation[1]/person-group[1]/*[1]),           ' 9999 ')"/>
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+        <xsl:variable name="d5" select="number(substring($s,5,1))"/>
+        <xsl:variable name="d6" select="number(substring($s,6,1)) * 3"/>
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+        <xsl:variable name="d8" select="number(substring($s,8,1)) * 3"/>
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+        <xsl:variable name="d12" select="number(substring($s,12,1)) * 3"/>
+        <xsl:variable name="d13" select="number(substring($s,13,1))"/>
+        <xsl:value-of select="number($d1 + $d2 + $d3 + $d4 + $d5 + $d6 + $d7 + $d8 + $d9 + $d10 + $d11 + $d12 + $d13) mod 10"/>
+      </xsl:when>
+      <xsl:otherwise>
+        <xsl:value-of select="number('1')"/>
+      </xsl:otherwise>
+    </xsl:choose>
+  </xsl:function>
+  <xsl:function name="e:escape-for-regex" as="xs:string">
+    <xsl:param name="arg" as="xs:string?"/>
+    <xsl:sequence select="replace($arg,'(\.|\[|\]|\\|\||\-|\^|\$|\?|\*|\+|\{|\}|\(|\))','\\$1')"/>
+  </xsl:function>
+  <xsl:function name="e:get-ordinal" as="xs:string">
+    <xsl:param name="value" as="xs:integer?"/>
+    <xsl:if test="translate(string($value), '0123456789', '') = '' and number($value) &gt; 0">
+      <xsl:variable name="mod100" select="$value mod 100"/>
+      <xsl:variable name="mod10" select="$value mod 10"/>
+      <xsl:choose>
+        <xsl:when test="$mod100 = 11 or $mod100 = 12 or $mod100 = 13">
+          <xsl:value-of select="concat($value,'th')"/>
+        </xsl:when>
+        <xsl:when test="$mod10 = 1">
+          <xsl:value-of select="concat($value,'st')"/>
+        </xsl:when>
+        <xsl:when test="$mod10 = 2">
+          <xsl:value-of select="concat($value,'nd')"/>
+        </xsl:when>
+        <xsl:when test="$mod10 = 3">
+          <xsl:value-of select="concat($value,'rd')"/>
+        </xsl:when>
+        <xsl:otherwise>
+          <xsl:value-of select="concat($value,'th')"/>
+        </xsl:otherwise>
+      </xsl:choose>
+    </xsl:if>
+  </xsl:function>
+  <let name="org-regex" value="'b\.\p{Zs}?subtilis|bacillus\p{Zs}?subtilis|d\.\p{Zs}?melanogaster|drosophila\p{Zs}?melanogaster|e\.\p{Zs}?coli|escherichia\p{Zs}?coli|s\.\p{Zs}?pombe|schizosaccharomyces\p{Zs}?pombe|s\.\p{Zs}?cerevisiae|saccharomyces\p{Zs}?cerevisiae|c\.\p{Zs}?elegans|caenorhabditis\p{Zs}?elegans|a\.\p{Zs}?thaliana|arabidopsis\p{Zs}?thaliana|m\.\p{Zs}?thermophila|myceliophthora\p{Zs}?thermophila|dictyostelium|p\.\p{Zs}?falciparum|plasmodium\p{Zs}?falciparum|s\.\p{Zs}?enterica|salmonella\p{Zs}?enterica|s\.\p{Zs}?pyogenes|streptococcus\p{Zs}?pyogenes|p\.\p{Zs}?dumerilii|platynereis\p{Zs}?dumerilii|p\.\p{Zs}?cynocephalus|papio\p{Zs}?cynocephalus|o\.\p{Zs}?fasciatus|oncopeltus\p{Zs}?fasciatus|n\.\p{Zs}?crassa|neurospora\p{Zs}?crassa|c\.\p{Zs}?intestinalis|ciona\p{Zs}?intestinalis|e\.\p{Zs}?cuniculi|encephalitozoon\p{Zs}?cuniculi|h\.\p{Zs}?salinarum|halobacterium\p{Zs}?salinarum|s\.\p{Zs}?solfataricus|sulfolobus\p{Zs}?solfataricus|s\.\p{Zs}?mediterranea|schmidtea\p{Zs}?mediterranea|s\.\p{Zs}?rosetta|salpingoeca\p{Zs}?rosetta|n\.\p{Zs}?vectensis|nematostella\p{Zs}?vectensis|s\.\p{Zs}?aureus|staphylococcus\p{Zs}?aureus|v\.\p{Zs}?cholerae|vibrio\p{Zs}?cholerae|t\.\p{Zs}?thermophila|tetrahymena\p{Zs}?thermophila|c\.\p{Zs}?reinhardtii|chlamydomonas\p{Zs}?reinhardtii|n\.\p{Zs}?attenuata|nicotiana\p{Zs}?attenuata|e\.\p{Zs}?carotovora|erwinia\p{Zs}?carotovora|e\.\p{Zs}?faecalis|h\.\p{Zs}?sapiens|homo\p{Zs}?sapiens|c\.\p{Zs}?trachomatis|chlamydia\p{Zs}?trachomatis|enterococcus\p{Zs}?faecalis|x\.\p{Zs}?laevis|xenopus\p{Zs}?laevis|x\.\p{Zs}?tropicalis|xenopus\p{Zs}?tropicalis|m\.\p{Zs}?musculus|mus\p{Zs}?musculus|d\.\p{Zs}?immigrans|drosophila\p{Zs}?immigrans|d\.\p{Zs}?subobscura|drosophila\p{Zs}?subobscura|d\.\p{Zs}?affinis|drosophila\p{Zs}?affinis|d\.\p{Zs}?obscura|drosophila\p{Zs}?obscura|f\.\p{Zs}?tularensis|francisella\p{Zs}?tularensis|p\.\p{Zs}?plantaginis|podosphaera\p{Zs}?plantaginis|p\.\p{Zs}?lanceolata|plantago\p{Zs}?lanceolata|m\.\p{Zs}?trossulus|mytilus\p{Zs}?trossulus|m\.\p{Zs}?edulis|mytilus\p{Zs}?edulis|m\.\p{Zs}?chilensis|mytilus\p{Zs}?chilensis|u\.\p{Zs}?maydis|ustilago\p{Zs}?maydis|p\.\p{Zs}?knowlesi|plasmodium\p{Zs}?knowlesi|p\.\p{Zs}?aeruginosa|pseudomonas\p{Zs}?aeruginosa|t\.\p{Zs}?brucei|trypanosoma\p{Zs}?brucei|t\.\p{Zs}?gondii|toxoplasma\p{Zs}?gondii|d\.\p{Zs}?rerio|danio\p{Zs}?rerio|yimenosaurus|lesothosaurus\p{Zs}?diagnosticus|l\.\p{Zs}?diagnosticus|scelidosaurus\p{Zs}?harrisonii|s\.\p{Zs}?harrisonii|haya\p{Zs}?griva|h\.\p{Zs}?griva|polacanthus\p{Zs}?foxii|p\.\p{Zs}?foxii|scutellosaurus\p{Zs}?lawleri|s\.\p{Zs}?lawleri|saichania\p{Zs}?chulsanensis|s\.\p{Zs}?chulsanensis|gargoyleosaurus\p{Zs}?parkpinorum|g\.\p{Zs}?parkpinorum|europelta\p{Zs}?carbonensis|e\.\p{Zs}?carbonensis|stegosaurus\p{Zs}?stenops|s\.\p{Zs}?stenops|pinacosaurus\p{Zs}?grangeri|p\.\p{Zs}?grangeri|tatisaurus\p{Zs}?oehleri|t\.\p{Zs}?oehleri|hungarosaurus\p{Zs}?tormai|h\.\p{Zs}?tormai|bienosaurus\p{Zs}?lufengensis|b\.\p{Zs}?lufengensis|fabrosaurus\p{Zs}?australis|f\.\p{Zs}?australis|chinshakiangosaurus\p{Zs}?chunghoensis|c\.\p{Zs}?chunghoensis|euoplocephalus\p{Zs}?tutus|e\.\p{Zs}?tutus|drosophila|xenopus|salmonella|g\.\p{Zs}?beringei|gorilla\p{Zs}?beringei|m\.\p{Zs}?assamensis|macaca\p{Zs}?assamensis|m\.\p{Zs}?fuscata|macaca\p{Zs}?fuscata|m\.\p{Zs}?mulatta|macaca\p{Zs}?mulatta|m\.\p{Zs}?nemestrina|macaca\p{Zs}?nemestrina|m\.\p{Zs}?sphinx|mandrillus\p{Zs}?sphinx|p\.\p{Zs}?anubis|papio\p{Zs}?anubis|p\.\p{Zs}?hamadryas|papio\p{Zs}?hamadryas|p\.\p{Zs}?paniscus|pan\p{Zs}?paniscus|p\.\p{Zs}?troglodytes|pan\p{Zs}?troglodytes'"/>
+  <let name="sec-title-regex" value="string-join(     for $x in tokenize($org-regex,'\|')     return concat('^',$x,'$')     ,'|')"/>
+  <xsl:function name="e:org-conform" as="xs:string">
+  <xsl:param name="s" as="xs:string"/>
+  <xsl:choose>
+    <xsl:when test="matches($s,'b\.\p{Zs}?subtilis')">
+      <xsl:value-of select="'B. subtilis'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'bacillus\p{Zs}?subtilis')">
+      <xsl:value-of select="'Bacillus subtilis'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'d\.\p{Zs}?melanogaster')">
+      <xsl:value-of select="'D. melanogaster'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'drosophila\p{Zs}?melanogaster')">
+      <xsl:value-of select="'Drosophila melanogaster'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'e\.\p{Zs}?coli')">
+      <xsl:value-of select="'E. coli'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'escherichia\p{Zs}?coli')">
+      <xsl:value-of select="'Escherichia coli'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'s\.\p{Zs}?pombe')">
+      <xsl:value-of select="'S. pombe'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'schizosaccharomyces\p{Zs}?pombe')">
+      <xsl:value-of select="'Schizosaccharomyces pombe'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'s\.\p{Zs}?cerevisiae')">
+      <xsl:value-of select="'S. cerevisiae'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'saccharomyces\p{Zs}?cerevisiae')">
+      <xsl:value-of select="'Saccharomyces cerevisiae'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'c\.\p{Zs}?elegans')">
+      <xsl:value-of select="'C. elegans'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'caenorhabditis\p{Zs}?elegans')">
+      <xsl:value-of select="'Caenorhabditis elegans'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'a\.\p{Zs}?thaliana')">
+      <xsl:value-of select="'A. thaliana'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'arabidopsis\p{Zs}?thaliana')">
+      <xsl:value-of select="'Arabidopsis thaliana'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'m\.\p{Zs}?thermophila')">
+      <xsl:value-of select="'M. thermophila'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'myceliophthora\p{Zs}?thermophila')">
+      <xsl:value-of select="'Myceliophthora thermophila'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'dictyostelium')">
+      <xsl:value-of select="'Dictyostelium'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'p\.\p{Zs}?falciparum')">
+      <xsl:value-of select="'P. falciparum'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'plasmodium\p{Zs}?falciparum')">
+      <xsl:value-of select="'Plasmodium falciparum'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'s\.\p{Zs}?enterica')">
+      <xsl:value-of select="'S. enterica'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'salmonella\p{Zs}?enterica')">
+      <xsl:value-of select="'Salmonella enterica'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'s\.\p{Zs}?pyogenes')">
+      <xsl:value-of select="'S. pyogenes'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'streptococcus\p{Zs}?pyogenes')">
+      <xsl:value-of select="'Streptococcus pyogenes'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'p\.\p{Zs}?dumerilii')">
+      <xsl:value-of select="'P. dumerilii'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'platynereis\p{Zs}?dumerilii')">
+      <xsl:value-of select="'Platynereis dumerilii'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'p\.\p{Zs}?cynocephalus')">
+      <xsl:value-of select="'P. cynocephalus'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'papio\p{Zs}?cynocephalus')">
+      <xsl:value-of select="'Papio cynocephalus'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'o\.\p{Zs}?fasciatus')">
+      <xsl:value-of select="'O. fasciatus'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'oncopeltus\p{Zs}?fasciatus')">
+      <xsl:value-of select="'Oncopeltus fasciatus'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'n\.\p{Zs}?crassa')">
+      <xsl:value-of select="'N. crassa'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'neurospora\p{Zs}?crassa')">
+      <xsl:value-of select="'Neurospora crassa'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'c\.\p{Zs}?intestinalis')">
+      <xsl:value-of select="'C. intestinalis'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'ciona\p{Zs}?intestinalis')">
+      <xsl:value-of select="'Ciona intestinalis'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'e\.\p{Zs}?cuniculi')">
+      <xsl:value-of select="'E. cuniculi'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'encephalitozoon\p{Zs}?cuniculi')">
+      <xsl:value-of select="'Encephalitozoon cuniculi'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'h\.\p{Zs}?salinarum')">
+      <xsl:value-of select="'H. salinarum'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'halobacterium\p{Zs}?salinarum')">
+      <xsl:value-of select="'Halobacterium salinarum'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'s\.\p{Zs}?solfataricus')">
+      <xsl:value-of select="'S. solfataricus'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'sulfolobus\p{Zs}?solfataricus')">
+      <xsl:value-of select="'Sulfolobus solfataricus'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'s\.\p{Zs}?mediterranea')">
+      <xsl:value-of select="'S. mediterranea'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'schmidtea\p{Zs}?mediterranea')">
+      <xsl:value-of select="'Schmidtea mediterranea'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'s\.\p{Zs}?rosetta')">
+      <xsl:value-of select="'S. rosetta'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'salpingoeca\p{Zs}?rosetta')">
+      <xsl:value-of select="'Salpingoeca rosetta'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'n\.\p{Zs}?vectensis')">
+      <xsl:value-of select="'N. vectensis'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'nematostella\p{Zs}?vectensis')">
+      <xsl:value-of select="'Nematostella vectensis'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'s\.\p{Zs}?aureus')">
+      <xsl:value-of select="'S. aureus'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'staphylococcus\p{Zs}?aureus')">
+      <xsl:value-of select="'Staphylococcus aureus'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'v\.\p{Zs}?cholerae')">
+      <xsl:value-of select="'V. cholerae'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'vibrio\p{Zs}?cholerae')">
+      <xsl:value-of select="'Vibrio cholerae'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'t\.\p{Zs}?thermophila')">
+      <xsl:value-of select="'T. thermophila'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'tetrahymena\p{Zs}?thermophila')">
+      <xsl:value-of select="'Tetrahymena thermophila'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'c\.\p{Zs}?reinhardtii')">
+      <xsl:value-of select="'C. reinhardtii'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'chlamydomonas\p{Zs}?reinhardtii')">
+      <xsl:value-of select="'Chlamydomonas reinhardtii'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'n\.\p{Zs}?attenuata')">
+      <xsl:value-of select="'N. attenuata'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'nicotiana\p{Zs}?attenuata')">
+      <xsl:value-of select="'Nicotiana attenuata'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'e\.\p{Zs}?carotovora')">
+      <xsl:value-of select="'E. carotovora'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'erwinia\p{Zs}?carotovora')">
+      <xsl:value-of select="'Erwinia carotovora'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'e\.\p{Zs}?faecalis')">
+      <xsl:value-of select="'E. faecalis'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'h\.\p{Zs}?sapiens')">
+      <xsl:value-of select="'H. sapiens'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'homo\p{Zs}?sapiens')">
+      <xsl:value-of select="'Homo sapiens'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'c\.\p{Zs}?trachomatis')">
+      <xsl:value-of select="'C. trachomatis'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'chlamydia\p{Zs}?trachomatis')">
+      <xsl:value-of select="'Chlamydia trachomatis'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'enterococcus\p{Zs}?faecalis')">
+      <xsl:value-of select="'Enterococcus faecalis'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'x\.\p{Zs}?laevis')">
+      <xsl:value-of select="'X. laevis'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'xenopus\p{Zs}?laevis')">
+      <xsl:value-of select="'Xenopus laevis'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'x\.\p{Zs}?tropicalis')">
+      <xsl:value-of select="'X. tropicalis'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'xenopus\p{Zs}?tropicalis')">
+      <xsl:value-of select="'Xenopus tropicalis'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'m\.\p{Zs}?musculus')">
+      <xsl:value-of select="'M. musculus'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'mus\p{Zs}?musculus')">
+      <xsl:value-of select="'Mus musculus'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'d\.\p{Zs}?immigrans')">
+      <xsl:value-of select="'D. immigrans'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'drosophila\p{Zs}?immigrans')">
+      <xsl:value-of select="'Drosophila immigrans'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'d\.\p{Zs}?subobscura')">
+      <xsl:value-of select="'D. subobscura'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'drosophila\p{Zs}?subobscura')">
+      <xsl:value-of select="'Drosophila subobscura'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'d\.\p{Zs}?affinis')">
+      <xsl:value-of select="'D. affinis'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'drosophila\p{Zs}?affinis')">
+      <xsl:value-of select="'Drosophila affinis'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'d\.\p{Zs}?obscura')">
+      <xsl:value-of select="'D. obscura'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'drosophila\p{Zs}?obscura')">
+      <xsl:value-of select="'Drosophila obscura'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'f\.\p{Zs}?tularensis')">
+      <xsl:value-of select="'F. tularensis'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'francisella\p{Zs}?tularensis')">
+      <xsl:value-of select="'Francisella tularensis'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'p\.\p{Zs}?plantaginis')">
+      <xsl:value-of select="'P. plantaginis'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'podosphaera\p{Zs}?plantaginis')">
+      <xsl:value-of select="'Podosphaera plantaginis'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'p\.\p{Zs}?lanceolata')">
+      <xsl:value-of select="'P. lanceolata'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'plantago\p{Zs}?lanceolata')">
+      <xsl:value-of select="'Plantago lanceolata'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'m\.\p{Zs}?trossulus')">
+      <xsl:value-of select="'M. trossulus'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'mytilus\p{Zs}?trossulus')">
+      <xsl:value-of select="'Mytilus trossulus'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'m\.\p{Zs}?edulis')">
+      <xsl:value-of select="'M. edulis'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'mytilus\p{Zs}?edulis')">
+      <xsl:value-of select="'Mytilus edulis'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'m\.\p{Zs}?chilensis')">
+      <xsl:value-of select="'M. chilensis'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'mytilus\p{Zs}?chilensis')">
+      <xsl:value-of select="'Mytilus chilensis'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'u\.\p{Zs}?maydis')">
+      <xsl:value-of select="'U. maydis'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'ustilago\p{Zs}?maydis')">
+      <xsl:value-of select="'Ustilago maydis'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'p\.\p{Zs}?knowlesi')">
+      <xsl:value-of select="'P. knowlesi'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'plasmodium\p{Zs}?knowlesi')">
+      <xsl:value-of select="'Plasmodium knowlesi'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'p\.\p{Zs}?aeruginosa')">
+      <xsl:value-of select="'P. aeruginosa'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'pseudomonas\p{Zs}?aeruginosa')">
+      <xsl:value-of select="'Pseudomonas aeruginosa'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'t\.\p{Zs}?brucei')">
+      <xsl:value-of select="'T. brucei'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'trypanosoma\p{Zs}?brucei')">
+      <xsl:value-of select="'Trypanosoma brucei'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'caulobacter\p{Zs}?crescentus')">
+      <xsl:value-of select="'Caulobacter crescentus'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'c\.\p{Zs}?crescentus')">
+      <xsl:value-of select="'C. crescentus'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'agrobacterium\p{Zs}?tumefaciens')">
+      <xsl:value-of select="'Agrobacterium tumefaciens'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'a\.\p{Zs}?tumefaciens')">
+      <xsl:value-of select="'A. tumefaciens'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'t\.\p{Zs}?gondii')">
+      <xsl:value-of select="'T. gondii'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'toxoplasma\p{Zs}?gondii')">
+      <xsl:value-of select="'Toxoplasma gondii'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'d\.\p{Zs}?rerio')">
+      <xsl:value-of select="'D. rerio'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'danio\p{Zs}?rerio')">
+      <xsl:value-of select="'Danio rerio'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'drosophila')">
+      <xsl:value-of select="'Drosophila'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'yimenosaurus')">
+      <xsl:value-of select="'Yimenosaurus'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'lesothosaurus\p{Zs}?diagnosticus')">
+      <xsl:value-of select="'Lesothosaurus diagnosticus'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'l.\p{Zs}?diagnosticus')">
+      <xsl:value-of select="'L. diagnosticus'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'scelidosaurus\p{Zs}?harrisonii')">
+      <xsl:value-of select="'Scelidosaurus harrisonii'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'s.\p{Zs}?harrisonii')">
+      <xsl:value-of select="'S. harrisonii'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'haya\p{Zs}?griva')">
+      <xsl:value-of select="'Haya griva'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'h.\p{Zs}?griva')">
+      <xsl:value-of select="'H. griva'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'polacanthus\p{Zs}?foxii')">
+      <xsl:value-of select="'Polacanthus foxii'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'p.\p{Zs}?foxii')">
+      <xsl:value-of select="'P. foxii'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'scutellosaurus\p{Zs}?lawleri')">
+      <xsl:value-of select="'Scutellosaurus lawleri'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'s.\p{Zs}?lawleri')">
+      <xsl:value-of select="'S. lawleri'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'saichania\p{Zs}?chulsanensis')">
+      <xsl:value-of select="'Saichania chulsanensis'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'s.\p{Zs}?chulsanensis')">
+      <xsl:value-of select="'S. chulsanensis'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'gargoyleosaurus\p{Zs}?parkpinorum')">
+      <xsl:value-of select="'Gargoyleosaurus parkpinorum'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'g.\p{Zs}?parkpinorum')">
+      <xsl:value-of select="'G. parkpinorum'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'europelta\p{Zs}?carbonensis')">
+      <xsl:value-of select="'Europelta carbonensis'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'e.\p{Zs}?carbonensis')">
+      <xsl:value-of select="'E. carbonensis'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'stegosaurus\p{Zs}?stenops')">
+      <xsl:value-of select="'Stegosaurus stenops'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'s.\p{Zs}?stenops')">
+      <xsl:value-of select="'S. stenops'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'pinacosaurus\p{Zs}?grangeri')">
+      <xsl:value-of select="'Pinacosaurus grangeri'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'p.\p{Zs}?grangeri')">
+      <xsl:value-of select="'P. grangeri'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'tatisaurus\p{Zs}?oehleri')">
+      <xsl:value-of select="'Tatisaurus oehleri'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'t.\p{Zs}?oehleri')">
+      <xsl:value-of select="'T. oehleri'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'hungarosaurus\p{Zs}?tormai')">
+      <xsl:value-of select="'Hungarosaurus tormai'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'h.\p{Zs}?tormai')">
+      <xsl:value-of select="'H. tormai'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'lesothosaurus\p{Zs}?diagnosticus')">
+      <xsl:value-of select="'Lesothosaurus diagnosticus'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'l.\p{Zs}?diagnosticus')">
+      <xsl:value-of select="'L. diagnosticus'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'bienosaurus\p{Zs}?lufengensis')">
+      <xsl:value-of select="'Bienosaurus lufengensis'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'b.\p{Zs}?lufengensis')">
+      <xsl:value-of select="'B. lufengensis'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'fabrosaurus\p{Zs}?australis')">
+      <xsl:value-of select="'Fabrosaurus australis'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'f.\p{Zs}?australis')">
+      <xsl:value-of select="'F. australis'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'chinshakiangosaurus\p{Zs}?chunghoensis')">
+      <xsl:value-of select="'Chinshakiangosaurus chunghoensis'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'c.\p{Zs}?chunghoensis')">
+      <xsl:value-of select="'C. chunghoensis'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'euoplocephalus\p{Zs}?tutus')">
+      <xsl:value-of select="'Euoplocephalus tutus'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'e.\p{Zs}?tutus')">
+      <xsl:value-of select="'E. tutus'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'g\.\p{Zs}?beringei')">
+      <xsl:value-of select="'G. beringei'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'gorilla\p{Zs}?beringei')">
+      <xsl:value-of select="'Gorilla beringei'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'m\.\p{Zs}?assamensis')">
+      <xsl:value-of select="'M. assamensis'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'macaca\p{Zs}?assamensis')">
+      <xsl:value-of select="'Macaca assamensis'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'m\.\p{Zs}?fuscata')">
+      <xsl:value-of select="'M. fuscata'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'macaca\p{Zs}?fuscata')">
+      <xsl:value-of select="'Macaca fuscata'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'m\.\p{Zs}?mulatta')">
+      <xsl:value-of select="'M. mulatta'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'macaca\p{Zs}?mulatta')">
+      <xsl:value-of select="'Macaca mulatta'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'m\.\p{Zs}?nemestrina')">
+      <xsl:value-of select="'M. nemestrina'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'macaca\p{Zs}?nemestrina')">
+      <xsl:value-of select="'Macaca nemestrina'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'m\.\p{Zs}?sphinx')">
+      <xsl:value-of select="'M. sphinx'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'mandrillus\p{Zs}?sphinx')">
+      <xsl:value-of select="'Mandrillus sphinx'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'p\.\p{Zs}?anubis')">
+      <xsl:value-of select="'P. anubis'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'papio\p{Zs}?anubis')">
+      <xsl:value-of select="'Papio anubis'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'p\.\p{Zs}?hamadryas')">
+      <xsl:value-of select="'P. hamadryas'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'papio\p{Zs}?hamadryas')">
+      <xsl:value-of select="'Papio hamadryas'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'p\.\p{Zs}?paniscus')">
+      <xsl:value-of select="'P. paniscus'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'pan\p{Zs}?paniscus')">
+      <xsl:value-of select="'Pan paniscus'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'p\.\p{Zs}?troglodytes')">
+      <xsl:value-of select="'P. troglodytes'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'pan\p{Zs}?troglodytes')">
+      <xsl:value-of select="'Pan troglodytes'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'xenopus')">
+      <xsl:value-of select="'Xenopus'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'salmonella')">
+      <xsl:value-of select="'Salmonella'"/>
+    </xsl:when>
+    <xsl:otherwise>
+      <xsl:value-of select="'undefined'"/>
+    </xsl:otherwise>
+  </xsl:choose>
+</xsl:function>
+  <xsl:function name="e:code-check">
+    <xsl:param name="s" as="xs:string"/>
+    <xsl:element name="code">
+      <xsl:if test="contains($s,'github')">
+        <xsl:element name="match">
+        <xsl:value-of select="'github '"/>
+        </xsl:element>
+      </xsl:if>
+      <xsl:if test="contains($s,'gitlab')">
+        <xsl:element name="match">
+        <xsl:value-of select="'gitlab '"/>
+        </xsl:element>
+      </xsl:if>
+      <xsl:if test="contains($s,'git.exeter.ac.uk')">
+        <xsl:element name="match">
+          <xsl:value-of select="'git.exeter.ac.uk '"/>
+        </xsl:element>
+      </xsl:if>
+      <xsl:if test="contains($s,'codeplex')">
+        <xsl:element name="match">
+        <xsl:value-of select="'codeplex '"/>
+        </xsl:element>
+      </xsl:if>
+      <xsl:if test="contains($s,'sourceforge')">
+        <xsl:element name="match">
+        <xsl:value-of select="'sourceforge '"/>
+        </xsl:element>
+      </xsl:if>
+      <xsl:if test="contains($s,'bitbucket')">
+        <xsl:element name="match">
+        <xsl:value-of select="'bitbucket '"/>
+        </xsl:element>
+      </xsl:if>
+      <xsl:if test="contains($s,'assembla ')">
+        <xsl:element name="match">
+        <xsl:value-of select="'assembla '"/>
+        </xsl:element>
+      </xsl:if>
+    </xsl:element>
+  </xsl:function>
+  <xsl:function name="e:get-xrefs">
+    <xsl:param name="article"/>
+    <xsl:param name="object-id"/>
+    <xsl:param name="object-type"/>
+    <xsl:variable name="object-no" select="replace($object-id,'[^0-9]','')"/>
+    <xsl:element name="matches">
+      <xsl:for-each select="$article//xref[(@ref-type=$object-type) and not(ancestor::caption)]">
+        <xsl:variable name="rid-no" select="replace(./@rid,'[^0-9]','')"/>
+        <xsl:variable name="text-no" select="tokenize(normalize-space(replace(.,'[^0-9]',' ')),'\p{Zs}')[last()]"/>
+        <xsl:choose>
+          <xsl:when test="./@rid = $object-id">
+            <xsl:element name="match">
+              <xsl:attribute name="sec-id">
+                <xsl:value-of select="./ancestor::sec[1]/@id"/>
+              </xsl:attribute>
+              <xsl:value-of select="self::*"/>
+            </xsl:element>
+          </xsl:when>
+          <xsl:when test="contains(./@rid,'app')"/>
+          <xsl:when test="($rid-no lt $object-no) and (./following-sibling::text()[1] = '–') and (./following-sibling::*[1]/name()='xref') and (number(replace(replace(./following-sibling::xref[1]/@rid,'\-','.'),'[a-z]','')) gt number($object-no))">
+            <xsl:element name="match">
+              <xsl:attribute name="sec-id">
+                <xsl:value-of select="./ancestor::sec[1]/@id"/>
+              </xsl:attribute>
+              <xsl:value-of select="self::*"/>
+            </xsl:element>
+          </xsl:when>
+          <xsl:when test="($rid-no lt $object-no) and contains(.,$object-no) and (contains(.,'Videos') or contains(.,'videos') and contains(.,'–'))">
+            <xsl:element name="match">
+              <xsl:attribute name="sec-id">
+                <xsl:value-of select="./ancestor::sec[1]/@id"/>
+              </xsl:attribute>
+              <xsl:value-of select="self::*"/>
+            </xsl:element>
+          </xsl:when>
+          <xsl:when test="($rid-no lt $object-no) and (contains(.,'Videos') or contains(.,'videos') and contains(.,'—')) and ($text-no gt $object-no)">
+            <xsl:element name="match">
+              <xsl:attribute name="sec-id">
+                <xsl:value-of select="./ancestor::sec[1]/@id"/>
+              </xsl:attribute>
+              <xsl:value-of select="self::*"/>
+            </xsl:element>
+          </xsl:when>
+          <xsl:otherwise/>
+        </xsl:choose>
+      </xsl:for-each>
+    </xsl:element>
+  </xsl:function>
+  <xsl:function name="e:get-iso-pub-date">
+    <xsl:param name="element"/>
+    <xsl:choose>
+      <xsl:when test="$element/ancestor-or-self::article//article-meta/pub-date[(@date-type='publication') or (@date-type='pub')]/month">
+        <xsl:variable name="pub-date" select="$element/ancestor-or-self::article//article-meta/pub-date[(@date-type='publication') or (@date-type='pub')]"/>
+        <xsl:value-of select="concat($pub-date/year,'-',$pub-date/month,'-',$pub-date/day)"/>
+      </xsl:when>
+      <xsl:otherwise/>
+    </xsl:choose>
+  </xsl:function>
+  <xsl:function name="e:get-copyright-holder">
+    <xsl:param name="contrib-group"/>
+    <xsl:variable name="author-count" select="count($contrib-group/contrib[@contrib-type='author'])"/>
+    <xsl:choose>
+      <xsl:when test="$author-count lt 1"/>
+      <xsl:when test="$author-count = 1">
+        <xsl:choose>
+          <xsl:when test="$contrib-group/contrib[@contrib-type='author']/collab">
+            <xsl:value-of select="$contrib-group/contrib[@contrib-type='author']/collab[1]/text()[1]"/>
+          </xsl:when>
+          <xsl:otherwise>
+            <xsl:value-of select="$contrib-group/contrib[@contrib-type='author']/name[1]/surname[1]"/>
+          </xsl:otherwise>
+        </xsl:choose>
+      </xsl:when>
+      <xsl:when test="$author-count = 2">
+        <xsl:choose>
+          <xsl:when test="$contrib-group/contrib[@contrib-type='author']/collab">
+            <xsl:choose>
+              <xsl:when test="$contrib-group/contrib[@contrib-type='author'][1]/collab and $contrib-group/contrib[@contrib-type='author'][2]/collab">
+                <xsl:value-of select="concat($contrib-group/contrib[@contrib-type='author']/collab[1]/text()[1],' and ',$contrib-group/contrib[@contrib-type='author']/collab[2]/text()[1])"/>
+              </xsl:when>
+              <xsl:when test="$contrib-group/contrib[@contrib-type='author'][1]/collab">
+                <xsl:value-of select="concat($contrib-group/contrib[@contrib-type='author'][1]/collab[1]/text()[1],' and ',$contrib-group/contrib[@contrib-type='author'][2]/name[1]/surname[1])"/>
+              </xsl:when>
+              <xsl:otherwise>
+                <xsl:value-of select="concat($contrib-group/contrib[@contrib-type='author'][1]/name[1]/surname[1],' and ',$contrib-group/contrib[@contrib-type='author'][2]/collab[1]/text()[1])"/>
+              </xsl:otherwise>
+            </xsl:choose>
+          </xsl:when>
+          <xsl:otherwise>
+            <xsl:value-of select="concat($contrib-group/contrib[@contrib-type='author'][1]/name[1]/surname[1],' and ',$contrib-group/contrib[@contrib-type='author'][2]/name[1]/surname[1])"/>
+          </xsl:otherwise>
+        </xsl:choose>
+      </xsl:when>
+      
+      <xsl:otherwise>
+        <xsl:variable name="is-equal-contrib" select="if ($contrib-group/contrib[@contrib-type='author'][1]/@equal-contrib='yes') then true() else false()"/>
+        <xsl:choose>
+          <xsl:when test="$is-equal-contrib">
+            
+            <xsl:variable name="equal-contrib-rid" select="$contrib-group/contrib[@contrib-type='author'][1]/xref[starts-with(@rid,'equal-contrib')]/@rid"/>
+            <xsl:variable name="first-authors" select="$contrib-group/contrib[@contrib-type='author' and @equal-contrib='yes' and xref[@rid=$equal-contrib-rid] and not(preceding-sibling::contrib[not(xref[@rid=$equal-contrib-rid])])]"/>
+            <xsl:choose>
+              
+              <xsl:when test="$author-count = 3 and count($first-authors) = 3">
+                <xsl:value-of select="concat(e:get-surname($contrib-group/contrib[@contrib-type='author'][1]),                   ', ',                   e:get-surname($contrib-group/contrib[@contrib-type='author'][2]),                   ' and ',                   e:get-surname($contrib-group/contrib[@contrib-type='author'][3]))"/>
+              </xsl:when>
+              
+              <xsl:when test="count($first-authors) gt 3">
+                <xsl:variable name="first-auth-string" select="string-join(for $auth in $contrib-group/contrib[@contrib-type='author'][position() lt 4] return e:get-surname($auth),', ')"/>
+                <xsl:value-of select="concat($first-auth-string,' et al')"/>
+              </xsl:when>
+              
+              <xsl:otherwise>
+                <xsl:variable name="first-auth-string" select="string-join(for $auth in $first-authors return e:get-surname($auth),', ')"/>
+                <xsl:value-of select="concat($first-auth-string,' et al')"/>
+              </xsl:otherwise>
+            </xsl:choose>
+          </xsl:when>
+          
+          <xsl:otherwise>
+            <xsl:value-of select="concat(e:get-surname($contrib-group/contrib[@contrib-type='author'][1]),' et al')"/>
+          </xsl:otherwise>
+        </xsl:choose>
+      </xsl:otherwise>
+    </xsl:choose>
+  </xsl:function>
+  <xsl:function name="e:get-surname" as="text()">
+    <xsl:param name="contrib"/>
+    <xsl:choose>
+      <xsl:when test="$contrib/collab">
+        <xsl:value-of select="$contrib/collab[1]/text()[1]"/>
+      </xsl:when>
+      <xsl:otherwise>
+        <xsl:value-of select="$contrib//name[1]/surname[1]"/>
+      </xsl:otherwise>
+    </xsl:choose>
+  </xsl:function>
+  <xsl:function name="e:insight-box" as="element()">
+    <xsl:param name="box" as="xs:string"/>
+    <xsl:param name="cite-text" as="xs:string"/>
+    <xsl:variable name="box-text" select="substring-after(substring-after($box,'article'),' ')"/> 
+    
+    <xsl:element name="list">
+      <xsl:for-each select="tokenize($cite-text,'\p{Zs}')">
+        <xsl:choose>
+          <xsl:when test="contains($box-text,.)"/>
+          <xsl:otherwise>
+            <xsl:element name="item">
+              <xsl:attribute name="type">cite</xsl:attribute>
+              <xsl:value-of select="."/>
+            </xsl:element>
+          </xsl:otherwise>
+        </xsl:choose>
+      </xsl:for-each>
+      <xsl:for-each select="tokenize($box-text,'\p{Zs}')">
+        <xsl:choose>
+          <xsl:when test="contains($cite-text,.)"/>
+          <xsl:otherwise>
+            <xsl:element name="item">
+              <xsl:attribute name="type">box</xsl:attribute>
+              <xsl:value-of select="."/>
+            </xsl:element>
+          </xsl:otherwise>
+        </xsl:choose>
+      </xsl:for-each>
+    </xsl:element>
+  </xsl:function>
+  <let name="latin-regex" value="'in\p{Zs}+vitro|ex\p{Zs}+vitro|in\p{Zs}+vivo|ex\p{Zs}+vivo|a\p{Zs}+priori|a\p{Zs}+posteriori|de\p{Zs}+novo|in\p{Zs}+utero|in\p{Zs}+natura|in\p{Zs}+situ|in\p{Zs}+planta|in\p{Zs}+cellulo|rete\p{Zs}+mirabile|nomen\p{Zs}+novum| sensu |ad\p{Zs}+libitum|in\p{Zs}+ovo'"/>
+  <xsl:function name="e:get-latin-terms" as="element()">
+    <xsl:param name="article" as="element()"/>
+    <xsl:param name="regex" as="xs:string"/>
+    
+    <xsl:variable name="roman-text" select="lower-case(       string-join(for $x in $article/*[local-name() = 'body' or local-name() = 'back']//*       return       if ($x/ancestor-or-self::sec[@sec-type='additional-information']) then ()       else if ($x/ancestor-or-self::ref-list) then ()       else if ($x/local-name() = 'italic') then ()       else $x/text(),' '))"/>
+    <xsl:variable name="italic-text" select="lower-case(string-join($article//*:italic[not(ancestor::ref-list) and not(ancestor::sec[@sec-type='additional-information'])],' '))"/>
+    
+    
+    <xsl:element name="result">
+      <xsl:choose>
+        <xsl:when test="matches($roman-text,$regex)">
+          <xsl:element name="list">
+            <xsl:attribute name="list-type">roman</xsl:attribute>
+            <xsl:for-each select="tokenize($regex,'\|')">
+              <xsl:variable name="display" select="replace(replace(.,'\\p\{Zs\}\+',' '),'^ | $','')"/>
+              <xsl:element name="match">
+                <xsl:attribute name="count">
+                  <xsl:value-of select="count(tokenize($roman-text,.)) - 1"/>
+                </xsl:attribute>
+                <xsl:value-of select="$display"/>
+              </xsl:element>
+            </xsl:for-each>
+          </xsl:element>
+        </xsl:when>
+        <xsl:otherwise>
+          <xsl:element name="list">
+            <xsl:attribute name="list-type">roman</xsl:attribute>
+          </xsl:element>
+        </xsl:otherwise>
+      </xsl:choose>
+      <xsl:choose>
+        <xsl:when test="matches($italic-text,$regex)">
+          <xsl:element name="list">
+            <xsl:attribute name="list-type">italic</xsl:attribute>
+            <xsl:for-each select="tokenize($regex,'\|')">
+              <xsl:variable name="display" select="replace(.,'\\p\{Zs\}\+',' ')"/>
+              <xsl:element name="match">
+                <xsl:attribute name="count">
+                  <xsl:value-of select="count(tokenize($italic-text,.)) - 1"/>
+                </xsl:attribute>
+                <xsl:value-of select="$display"/>
+              </xsl:element>
+            </xsl:for-each>
+          </xsl:element>
+        </xsl:when>
+        <xsl:otherwise>
+          <xsl:element name="list">
+            <xsl:attribute name="list-type">italic</xsl:attribute>
+          </xsl:element>
+        </xsl:otherwise>
+      </xsl:choose>
+    </xsl:element>
+  </xsl:function>
+  <xsl:function name="e:print-latin-terms" as="xs:string">
+    <xsl:param name="list" as="element()"/>
+    <xsl:value-of select="string-join(       for $term in $list//*:match[@count != '0']        return if (number($term/@count) gt 1) then concat($term/@count,' instances of ',$term)       else concat($term/@count,' instance of ',$term)       ,', ')"/>
+  </xsl:function>
+  <xsl:function name="e:list-panels">
+    <xsl:param name="caption" as="xs:string"/>
+    <xsl:element name="list">
+      <xsl:for-each select="tokenize($caption,'\.\p{Zs}+')">
+        <xsl:if test="matches(.,'^[B-K]\p{P}?[A-K]?\.?\p{Zs}+')">
+          <xsl:element name="item">
+            <xsl:attribute name="token">
+              <xsl:value-of select="substring-before(.,' ')"/>
+            </xsl:attribute>
+            <xsl:value-of select="."/>
+          </xsl:element>
+        </xsl:if>
+      </xsl:for-each>
+    </xsl:element>
+  </xsl:function>
+  <xsl:function name="e:get-weekday" as="xs:integer?">
+    <xsl:param name="date" as="xs:anyAtomicType?"/>
+    <xsl:sequence select="       if (empty($date)) then ()       else xs:integer((xs:date($date) - xs:date('1901-01-06')) div xs:dayTimeDuration('P1D')) mod 7       "/>
+  </xsl:function>
+  <xsl:function name="e:line-count" as="xs:integer">
+    <xsl:param name="arg" as="xs:string?"/>
+    
+    <xsl:sequence select="count(tokenize($arg,'(\r\n?|\n\r?)'))"/>
+    
+  </xsl:function>
+  <pattern id="article-metadata">
+    <rule context="pub-date" id="pub-date-tests">
+      <let name="allowed-attributes" value="('publication-format','date-type','iso-8601-date')"/>
+      <assert test="parent::article-meta" role="error" id="pub-date-test-1">pub-date can only be a child of article-meta. This one is a child of <value-of select="parent::*/name()"/>
+      </assert>
+    </rule>
+  </pattern>
+  <pattern id="root-pattern">
+    <rule context="root" id="root-rule">
+      <assert test="descendant::pub-date" role="error" id="pub-date-tests-xspec-assert">pub-date must be present.</assert>
+    </rule>
+  </pattern>
+</schema>
\ No newline at end of file
diff --git a/test/tests/gen/pub-date-tests/pub-date-test-2/fail.xml b/test/tests/gen/pub-date-tests/pub-date-test-2/fail.xml
new file mode 100644
index 0000000000..901dbb0333
--- /dev/null
+++ b/test/tests/gen/pub-date-tests/pub-date-test-2/fail.xml
@@ -0,0 +1,15 @@
+<?oxygen SCHSchema="pub-date-test-2.sch"?>
+<!--Context: pub-date
+Test: report    @*[not(name()=$allowed-attributes)]
+Message: Only the following attributes are permitted on pub-date. This one has the following unallowed attributes: . -->
+<root xmlns:ali="http://www.niso.org/schemas/ali/1.0/" xmlns:mml="http://www.w3.org/1998/Math/MathML" xmlns:xlink="http://www.w3.org/1999/xlink">
+    <article>
+        <article-meta>
+            <pub-date has-smell="yes" assigning-authority="yo-mama" calendar="ive-hardly-met-her">
+                <day>22</day>
+                <month>10</month>
+                <year>2023</year>
+            </pub-date>
+        </article-meta>
+    </article>
+</root>
\ No newline at end of file
diff --git a/test/tests/gen/pub-date-tests/pub-date-test-2/pass.xml b/test/tests/gen/pub-date-tests/pub-date-test-2/pass.xml
new file mode 100644
index 0000000000..de09863ea2
--- /dev/null
+++ b/test/tests/gen/pub-date-tests/pub-date-test-2/pass.xml
@@ -0,0 +1,15 @@
+<?oxygen SCHSchema="pub-date-test-2.sch"?>
+<!--Context: pub-date
+Test: report    @*[not(name()=$allowed-attributes)]
+Message: Only the following attributes are permitted on pub-date. This one has the following unallowed attributes: . -->
+<root xmlns:ali="http://www.niso.org/schemas/ali/1.0/" xmlns:mml="http://www.w3.org/1998/Math/MathML" xmlns:xlink="http://www.w3.org/1999/xlink">
+    <article>
+        <article-meta>
+            <pub-date publication-format="electronic" date-type="publication">
+                <day>22</day>
+                <month>10</month>
+                <year>2023</year>
+            </pub-date>
+        </article-meta>
+    </article>
+</root>
\ No newline at end of file
diff --git a/test/tests/gen/pub-date-tests/pub-date-test-2/pub-date-test-2.sch b/test/tests/gen/pub-date-tests/pub-date-test-2/pub-date-test-2.sch
new file mode 100644
index 0000000000..fe1e4c4d31
--- /dev/null
+++ b/test/tests/gen/pub-date-tests/pub-date-test-2/pub-date-test-2.sch
@@ -0,0 +1,1303 @@
+<schema xmlns="http://purl.oclc.org/dsdl/schematron" xmlns:xlink="http://www.w3.org/1999/xlink" xmlns:xsl="http://www.w3.org/1999/XSL/Transform" xmlns:java="http://www.java.com/" xmlns:file="java.io.File" xmlns:ali="http://www.niso.org/schemas/ali/1.0/" xmlns:mml="http://www.w3.org/1998/Math/MathML" queryBinding="xslt2">
+  <title>eLife Schematron</title>
+  <ns uri="http://www.niso.org/schemas/ali/1.0/" prefix="ali"/>
+  <ns uri="http://www.w3.org/XML/1998/namespace" prefix="xml"/>
+  <ns uri="http://www.w3.org/1999/xlink" prefix="xlink"/>
+  <ns uri="http://www.w3.org/2001/XInclude" prefix="xi"/>
+  <ns uri="http://www.w3.org/1998/Math/MathML" prefix="mml"/>
+  <ns uri="http://saxon.sf.net/" prefix="saxon"/>
+  <ns uri="http://purl.org/dc/terms/" prefix="dc"/>
+  <ns uri="http://www.w3.org/2001/XMLSchema" prefix="xs"/>
+  <ns uri="https://elifesciences.org/namespace" prefix="e"/>
+  <ns uri="java.io.File" prefix="file"/>
+  <ns uri="http://www.java.com/" prefix="java"/>
+  <let name="features-subj" value="('Feature Article', 'Insight', 'Editorial')"/>
+  <let name="features-article-types" value="('article-commentary','editorial','discussion')"/>
+  <let name="research-subj" value="('Research Article', 'Short Report', 'Tools and Resources', 'Research Advance', 'Registered Report', 'Replication Study', 'Research Communication', 'Correction', 'Retraction', 'Scientific Correspondence', 'Review Article')"/>
+  <let name="notice-article-types" value="('correction','retraction','expression-of-concern')"/>
+  <let name="notice-display-types" value="('Correction','Retraction','Expression of Concern')"/>
+  <let name="allowed-article-types" value="('research-article','review-article',$features-article-types, $notice-article-types)"/>
+  <let name="allowed-disp-subj" value="($research-subj, $features-subj)"/>
+  <let name="MSAs" value="('Biochemistry and Chemical Biology', 'Cancer Biology', 'Cell Biology', 'Chromosomes and Gene Expression', 'Computational and Systems Biology', 'Developmental Biology', 'Ecology', 'Epidemiology and Global Health', 'Evolutionary Biology', 'Genetics and Genomics', 'Medicine', 'Immunology and Inflammation', 'Microbiology and Infectious Disease', 'Neuroscience', 'Physics of Living Systems', 'Plant Biology', 'Stem Cells and Regenerative Medicine', 'Structural Biology and Molecular Biophysics')"/>
+  <let name="funders" value="'../../../../../src/funders.xml'"/>
+  <let name="wellcome-fundref-ids" value="('http://dx.doi.org/10.13039/100010269','http://dx.doi.org/10.13039/100004440')"/>
+  <xsl:function name="e:is-prc" as="xs:boolean">
+    <xsl:param name="elem" as="node()"/>
+    <xsl:choose>
+      <xsl:when test="$elem/name()='article'">
+        <xsl:value-of select="e:is-prc-helper($elem)"/>
+      </xsl:when>
+      <xsl:otherwise>
+        <xsl:value-of select="e:is-prc-helper($elem/ancestor::article[1])"/>
+      </xsl:otherwise>
+    </xsl:choose>
+  </xsl:function>
+  <xsl:function name="e:is-prc-helper" as="xs:boolean">
+    <xsl:param name="article" as="node()"/>
+    <xsl:choose>
+      <xsl:when test="$article//article-meta/custom-meta-group/custom-meta[meta-name='publishing-route']/meta-value='prc'">
+        <xsl:value-of select="true()"/>
+      </xsl:when>
+      <xsl:otherwise>
+        <xsl:value-of select="false()"/>
+      </xsl:otherwise>
+    </xsl:choose>
+  </xsl:function>
+  <xsl:function name="e:get-version" as="xs:string">
+    <xsl:param name="elem" as="node()"/>
+    <xsl:choose>
+      <xsl:when test="$elem/name()='article'">
+        <xsl:value-of select="e:get-version-helper($elem)"/>
+      </xsl:when>
+      <xsl:otherwise>
+        <xsl:value-of select="e:get-version-helper($elem/ancestor::article[1])"/>
+      </xsl:otherwise>
+    </xsl:choose>
+  </xsl:function>
+  <xsl:function name="e:get-version-helper" as="xs:string">
+    <xsl:param name="article" as="node()"/>
+    <xsl:choose>
+      <xsl:when test="$article//article-meta/custom-meta-group/custom-meta[meta-name='schema-version']/meta-value">
+        <xsl:value-of select="$article//article-meta/custom-meta-group/custom-meta[meta-name='schema-version']/meta-value"/>
+      </xsl:when>
+      <xsl:otherwise>
+        <xsl:value-of select="'1'"/>
+      </xsl:otherwise>
+    </xsl:choose>
+  </xsl:function>
+  <xsl:function name="e:titleCaseToken" as="xs:string">
+    <xsl:param name="s" as="xs:string"/>
+    <xsl:choose>
+      <xsl:when test="contains($s,'-')">
+        <xsl:value-of select="concat(           upper-case(substring(substring-before($s,'-'), 1, 1)),           lower-case(substring(substring-before($s,'-'),2)),           '-',           upper-case(substring(substring-after($s,'-'), 1, 1)),           lower-case(substring(substring-after($s,'-'),2)))"/>
+      </xsl:when>
+      <xsl:when test="lower-case($s)='elife'">
+        <xsl:value-of select="'eLife'"/>
+      </xsl:when>
+      <xsl:when test="lower-case($s)=('and','or','the','an','of','in','as','at','by','for','a','to','up','but','yet')">
+        <xsl:value-of select="lower-case($s)"/>
+      </xsl:when>
+      <xsl:when test="matches(lower-case($s),'^rna$|^dna$|^mri$|^hiv$|^tor$|^aids$|^covid-19$|^covid$')">
+        <xsl:value-of select="upper-case($s)"/>
+      </xsl:when>
+      <xsl:when test="matches(lower-case($s),'[1-4]d')">
+        <xsl:value-of select="upper-case($s)"/>
+      </xsl:when>
+      <xsl:otherwise>
+        <xsl:value-of select="concat(upper-case(substring($s, 1, 1)), lower-case(substring($s, 2)))"/>
+      </xsl:otherwise>
+    </xsl:choose>
+  </xsl:function>
+  <xsl:function name="e:titleCase" as="xs:string">
+    <xsl:param name="s" as="xs:string"/>
+    <xsl:choose>
+      
+      <xsl:when test="lower-case($s)='protein kinase a'">
+        <xsl:value-of select="'Protein Kinase A'"/>
+      </xsl:when>
+      <xsl:when test="contains($s,' ')">
+        <xsl:variable name="token1" select="substring-before($s,' ')"/>
+        <xsl:variable name="token2" select="substring-after($s,$token1)"/>
+        <xsl:choose>
+          <xsl:when test="lower-case($token1)='elife'">
+            <xsl:value-of select="concat('eLife',               ' ',               string-join(for $x in tokenize(substring-after($token2,' '),'\p{Zs}') return e:titleCaseToken($x),' ')               )"/>
+          </xsl:when>
+          <xsl:when test="matches(lower-case($token1),'^rna$|^dna$|^mri$|^hiv$|^tor$|^aids$|^covid-19$|^covid$')">
+            <xsl:value-of select="concat(upper-case($token1),               ' ',               string-join(for $x in tokenize(substring-after($token2,' '),'\p{Zs}') return e:titleCaseToken($x),' ')               )"/>
+          </xsl:when>
+          <xsl:when test="matches(lower-case($token1),'[1-4]d')">
+            <xsl:value-of select="concat(upper-case($token1),               ' ',               string-join(for $x in tokenize(substring-after($token2,' '),'\p{Zs}') return e:titleCaseToken($x),' ')               )"/>
+          </xsl:when>
+          <xsl:when test="contains($token1,'-')">
+            <xsl:value-of select="string-join(for $x in tokenize($s,'\p{Zs}') return e:titleCaseToken($x),' ')"/>
+          </xsl:when>
+          <xsl:otherwise>
+            <xsl:value-of select="concat(               concat(upper-case(substring($token1, 1, 1)), lower-case(substring($token1, 2))),               ' ',               string-join(for $x in tokenize(substring-after($token2,' '),'\p{Zs}') return e:titleCaseToken($x),' ')               )"/>
+          </xsl:otherwise>
+        </xsl:choose>
+      </xsl:when>
+      <xsl:when test="lower-case($s)='elife'">
+        <xsl:value-of select="'eLife'"/>
+      </xsl:when>
+      <xsl:when test="lower-case($s)=('and','or','the','an','of')">
+        <xsl:value-of select="lower-case($s)"/>
+      </xsl:when>
+      <xsl:when test="matches(lower-case($s),'^rna$|^dna$|^mri$|^hiv$|^tor$|^aids$|^covid-19$|^covid$')">
+        <xsl:value-of select="upper-case($s)"/>
+      </xsl:when>
+      <xsl:when test="matches(lower-case($s),'[1-4]d')">
+        <xsl:value-of select="upper-case($s)"/>
+      </xsl:when>
+      <xsl:otherwise>
+        <xsl:value-of select="e:titleCaseToken($s)"/>
+      </xsl:otherwise>
+    </xsl:choose>
+  </xsl:function>
+  <xsl:function name="e:article-type2title" as="xs:string">
+    <xsl:param name="s" as="xs:string"/>
+    <xsl:choose>
+      <xsl:when test="$s = 'Replication Study'">
+        <xsl:value-of select="'Replication Study:'"/>
+      </xsl:when>
+      <xsl:when test="$s = 'Registered Report'">
+        <xsl:value-of select="'Registered report:'"/>
+      </xsl:when>
+      <xsl:when test="$s = 'Correction'">
+        <xsl:value-of select="'Correction:'"/>
+      </xsl:when>
+      <xsl:when test="$s = 'Retraction'">
+        <xsl:value-of select="'Retraction:'"/>
+      </xsl:when>
+      <xsl:when test="$s = 'Expression of Concern'">
+        <xsl:value-of select="'Expression of Concern:'"/>
+      </xsl:when>
+      <xsl:otherwise>
+        <xsl:value-of select="'undefined'"/>
+      </xsl:otherwise>
+    </xsl:choose>
+  </xsl:function>
+  <xsl:function name="e:sec-type2title" as="xs:string">
+    <xsl:param name="s" as="xs:string"/>
+    <xsl:choose>
+      <xsl:when test="$s = 'intro'">
+        <xsl:value-of select="'Introduction'"/>
+      </xsl:when>
+      <xsl:when test="$s = 'results'">
+        <xsl:value-of select="'Results'"/>
+      </xsl:when>
+      <xsl:when test="$s = 'discussion'">
+        <xsl:value-of select="'Discussion'"/>
+      </xsl:when>
+      <xsl:when test="$s = 'materials|methods'">
+        <xsl:value-of select="'Materials and methods'"/>
+      </xsl:when>
+      <xsl:when test="$s = 'results|discussion'">
+        <xsl:value-of select="'Results and discussion'"/>
+      </xsl:when>
+      <xsl:when test="$s = 'methods'">
+        <xsl:value-of select="'Methods'"/>
+      </xsl:when>
+      <xsl:when test="$s = 'model'">
+        <xsl:value-of select="'Model'"/>
+      </xsl:when>
+      <xsl:when test="$s = 'additional-information'">
+        <xsl:value-of select="'Additional information'"/>
+      </xsl:when>
+      <xsl:when test="$s = 'supplementary-material'">
+        <xsl:value-of select="'Additional files'"/>
+      </xsl:when>
+      <xsl:when test="$s = 'data-availability'">
+        <xsl:value-of select="'Data availability'"/>
+      </xsl:when>
+      <xsl:otherwise>
+        <xsl:value-of select="'undefined'"/>
+      </xsl:otherwise>
+    </xsl:choose>
+  </xsl:function>
+  <xsl:function name="e:fig-id-type" as="xs:string">
+    <xsl:param name="s" as="xs:string"/>
+    <xsl:choose>
+      <xsl:when test="matches($s,'^fig[0-9]{1,3}$')">
+        <xsl:value-of select="'Figure'"/>
+      </xsl:when>
+      <xsl:when test="matches($s,'^fig[0-9]{1,3}s[0-9]{1,3}$')">
+        <xsl:value-of select="'Figure supplement'"/>
+      </xsl:when>
+      <xsl:when test="matches($s,'^box[0-9]{1,3}fig[0-9]{1,3}$')">
+        <xsl:value-of select="'Box figure'"/>
+      </xsl:when>
+      <xsl:when test="matches($s,'^app[0-9]{1,3}fig[0-9]{1,3}$')">
+        <xsl:value-of select="'Appendix figure'"/>
+      </xsl:when>
+      <xsl:when test="matches($s,'^app[0-9]{1,3}fig[0-9]{1,3}s[0-9]{1,3}$')">
+        <xsl:value-of select="'Appendix figure supplement'"/>
+      </xsl:when>
+      <xsl:when test="matches($s,'^respfig[0-9]{1,3}$|^sa[0-9]fig[0-9]{1,3}$')">
+        <xsl:value-of select="'Author response figure'"/>
+      </xsl:when>
+      <xsl:when test="matches($s,'^C[0-9]{1,3}$|^chem[0-9]{1,3}$')">
+        <xsl:value-of select="'Chemical structure'"/>
+      </xsl:when>
+      <xsl:when test="matches($s,'^app[0-9]{1,3}C[0-9]{1,3}$|^app[0-9]{1,3}chem[0-9]{1,3}$')">
+        <xsl:value-of select="'Appendix chemical structure'"/>
+      </xsl:when>
+      <xsl:when test="matches($s,'^S[0-9]{1,3}$|^scheme[0-9]{1,3}$')">
+        <xsl:value-of select="'Scheme'"/>
+      </xsl:when>
+      <xsl:when test="matches($s,'^app[0-9]{1,3}S[0-9]{1,3}$|^app[0-9]{1,3}scheme[0-9]{1,3}$')">
+        <xsl:value-of select="'Appendix scheme'"/>
+      </xsl:when>
+      <xsl:otherwise>
+        <xsl:value-of select="'undefined'"/>
+      </xsl:otherwise>
+    </xsl:choose>
+  </xsl:function>
+  <xsl:function name="e:stripDiacritics" as="xs:string">
+    <xsl:param name="string" as="xs:string"/>
+    <xsl:value-of select="replace(replace(replace(translate(normalize-unicode($string,'NFD'),'ƀȼđɇǥħɨıɉꝁłøɍŧɏƶ','bcdeghiijklortyz'),'[\p{M}’]',''),'æ','ae'),'ß','ss')"/>
+  </xsl:function>
+  <xsl:function name="e:ref-list-string" as="xs:string">
+    <xsl:param name="ref"/>
+    <xsl:choose>
+      <xsl:when test="$ref/element-citation[1]/person-group[1]/* and $ref/element-citation[1]/year">
+        <xsl:value-of select="concat(           replace(e:get-collab-or-surname($ref/element-citation[1]/person-group[1]/*[1]),'\p{Zs}',''),           ' ',           $ref/element-citation[1]/year[1],           ' ',           string-join(for $x in $ref/element-citation[1]/person-group[1]/*[position()=(2,3)]           return replace(e:get-collab-or-surname($x),'\p{Zs}',''),' ')           )"/>
+      </xsl:when>
+      <xsl:when test="$ref/element-citation/person-group[1]/*">
+        <xsl:value-of select="concat(           replace(e:get-collab-or-surname($ref/element-citation[1]/person-group[1]/*[1]),'\p{Zs}',''),           ' 9999 ',           string-join(for $x in $ref/element-citation[1]/person-group[1]/*[position()=(2,3)]           return replace(e:get-collab-or-surname($x),'\p{Zs}',''),' ')           )"/>
+      </xsl:when>
+      <xsl:when test="$ref/element-citation/year">
+        <xsl:value-of select="concat(' ',$ref/element-citation[1]/year[1])"/>
+      </xsl:when>
+      <xsl:otherwise>
+        <xsl:value-of select="'zzzzz 9999'"/>
+      </xsl:otherwise>
+    </xsl:choose>
+  </xsl:function>
+  <xsl:function name="e:ref-list-string2" as="xs:string">
+    <xsl:param name="ref"/>
+    <xsl:choose>
+      <xsl:when test="$ref/element-citation[1]/year and count($ref/element-citation[1]/person-group[1]/*) = 2">
+        <xsl:value-of select="concat(           e:get-collab-or-surname($ref/element-citation[1]/person-group[1]/*[1]),           ' ',           e:get-collab-or-surname($ref/element-citation[1]/person-group[1]/*[2]),           ' ',           $ref/element-citation[1]/year[1])"/>
+      </xsl:when>
+      <xsl:when test="$ref/element-citation/person-group[1]/* and $ref/element-citation[1]/year">
+        <xsl:value-of select="concat(           e:get-collab-or-surname($ref/element-citation[1]/person-group[1]/*[1]),           ' ',           $ref/element-citation[1]/year[1])"/>
+      </xsl:when>
+      <xsl:when test="$ref/element-citation/person-group[1]/*">
+        <xsl:value-of select="concat(           e:get-collab-or-surname($ref/element-citation[1]/person-group[1]/*[1]),           ' 9999 ')"/>
+      </xsl:when>
+      <xsl:when test="$ref/element-citation/year">
+        <xsl:value-of select="concat(' ',$ref/element-citation[1]/year[1])"/>
+      </xsl:when>
+      <xsl:otherwise>
+        <xsl:value-of select="'zzzzz 9999'"/>
+      </xsl:otherwise>
+    </xsl:choose>
+  </xsl:function>
+  <xsl:function name="e:get-collab-or-surname" as="xs:string?">
+    <xsl:param name="collab-or-name"/>
+    <xsl:choose>
+      <xsl:when test="$collab-or-name/name()='collab'">
+        <xsl:value-of select="e:stripDiacritics(replace(lower-case($collab-or-name),'\.',''))"/>
+      </xsl:when>
+      <xsl:when test="$collab-or-name/surname">
+        <xsl:value-of select="e:stripDiacritics(lower-case($collab-or-name/surname[1]))"/>
+      </xsl:when>
+      <xsl:otherwise/>
+    </xsl:choose>
+  </xsl:function>
+  <xsl:function name="e:cite-name-text" as="xs:string">
+    <xsl:param name="person-group"/>
+    <xsl:choose>
+      <xsl:when test="(count($person-group/*) = 1) and $person-group/name">
+        <xsl:value-of select="$person-group/name/surname[1]"/>
+      </xsl:when>
+      <xsl:when test="(count($person-group/*) = 1) and $person-group/collab">
+        <xsl:value-of select="$person-group/collab"/>
+      </xsl:when>
+      <xsl:when test="(count($person-group/*) = 2) and (count($person-group/name) = 1) and $person-group/*[1]/local-name() = 'collab'">
+        <xsl:value-of select="concat($person-group/collab,' and ',$person-group/name/surname[1])"/>
+      </xsl:when>
+      <xsl:when test="(count($person-group/*) = 2) and (count($person-group/name) = 1) and $person-group/*[1]/local-name() = 'name'">
+        <xsl:value-of select="concat($person-group/name/surname[1],' and ',$person-group/collab)"/>
+      </xsl:when>
+      <xsl:when test="(count($person-group/*) = 2) and (count($person-group/name) = 2)">
+        <xsl:value-of select="concat($person-group/name[1]/surname[1],' and ',$person-group/name[2]/surname[1])"/>
+      </xsl:when>
+      <xsl:when test="(count($person-group/*) = 2) and (count($person-group/collab) = 2)">
+        <xsl:value-of select="concat($person-group/collab[1],' and ',$person-group/collab[2])"/>
+      </xsl:when>
+      <xsl:when test="(count($person-group/*) ge 2) and $person-group/*[1]/local-name() = 'collab'">
+        <xsl:value-of select="concat($person-group/collab[1], ' et al.')"/>
+      </xsl:when>
+      <xsl:when test="(count($person-group/*) ge 2) and $person-group/*[1]/local-name() = 'name'">
+        <xsl:value-of select="concat($person-group/name[1]/surname[1], ' et al.')"/>
+      </xsl:when>
+      <xsl:otherwise>
+        <xsl:value-of select="'undetermined'"/>
+      </xsl:otherwise>
+    </xsl:choose>
+  </xsl:function>
+  <xsl:function name="e:citation-format1" as="xs:string">
+    <xsl:param name="element-citation"/>
+    <xsl:choose>
+      <xsl:when test="$element-citation/person-group and $element-citation//year">
+        <xsl:value-of select="concat(e:cite-name-text($element-citation/person-group[1]),', ',$element-citation/descendant::year[1])"/>
+      </xsl:when>
+      <xsl:when test="$element-citation/person-group and not($element-citation//year)">
+        <xsl:value-of select="concat(e:cite-name-text($element-citation/person-group[1]),', ')"/>
+      </xsl:when>
+      <xsl:when test="not($element-citation/person-group) and $element-citation//year">
+        <xsl:value-of select="concat('et al., ',$element-citation/descendant::year[1])"/>
+      </xsl:when>
+      <xsl:otherwise>
+        <xsl:value-of select="', '"/>
+      </xsl:otherwise>
+    </xsl:choose>
+  </xsl:function>
+  <xsl:function name="e:citation-format2" as="xs:string">
+    <xsl:param name="element-citation"/>
+    <xsl:choose>
+      <xsl:when test="$element-citation/person-group and $element-citation//year">
+        <xsl:value-of select="concat(e:cite-name-text($element-citation/person-group[1]),' (',$element-citation/descendant::year[1],')')"/>
+      </xsl:when>
+      <xsl:when test="$element-citation/person-group and not($element-citation//year)">
+        <xsl:value-of select="concat(e:cite-name-text($element-citation/person-group[1]),' ()')"/>
+      </xsl:when>
+      <xsl:when test="not($element-citation/person-group) and $element-citation//year">
+        <xsl:value-of select="concat('et al. (',$element-citation/descendant::year[1],')')"/>
+      </xsl:when>
+      <xsl:otherwise>
+        <xsl:value-of select="', '"/>
+      </xsl:otherwise>
+    </xsl:choose>
+  </xsl:function>
+  <xsl:function name="e:ref-cite-list">
+    <xsl:param name="ref-list" as="node()"/>
+    <xsl:element name="list">
+      <xsl:for-each select="$ref-list/ref[element-citation[year]]">
+        <xsl:variable name="cite" select="e:citation-format1(./element-citation[1])"/>
+        <xsl:element name="item">
+          <xsl:attribute name="id">
+            <xsl:value-of select="./@id"/>
+          </xsl:attribute>
+          <xsl:attribute name="no-suffix">
+            <xsl:value-of select="replace($cite,'[A-Za-z]$','')"/>
+          </xsl:attribute>
+          <xsl:value-of select="$cite"/>
+        </xsl:element>
+      </xsl:for-each>
+    </xsl:element>
+  </xsl:function>
+  <xsl:function name="e:non-distinct-citations">
+    <xsl:param name="cite-list" as="node()"/>
+    <xsl:element name="list">
+    <xsl:for-each select="$cite-list//*:item">
+      <xsl:variable name="cite" select="./string()"/>
+      <xsl:choose>
+        <xsl:when test="./preceding::*:item/string() = $cite">
+          <xsl:element name="item">
+            <xsl:attribute name="id">
+              <xsl:value-of select="./@id"/>
+            </xsl:attribute>
+            <xsl:value-of select="$cite"/>
+          </xsl:element>
+        </xsl:when>
+        <xsl:when test="not(matches($cite,'[A-Za-z]$')) and (./preceding::*:item/@no-suffix/string() = $cite)">
+          <xsl:element name="item">
+            <xsl:attribute name="id">
+              <xsl:value-of select="./@id"/>
+            </xsl:attribute>
+          <xsl:value-of select="$cite"/>
+          </xsl:element>
+        </xsl:when>
+        <xsl:when test="not(matches($cite,'[A-Za-z]$')) and ./following::*:item/@no-suffix/string() = $cite">
+          <xsl:element name="item">
+            <xsl:attribute name="id">
+              <xsl:value-of select="./@id"/>
+            </xsl:attribute>
+          <xsl:value-of select="$cite"/>
+          </xsl:element>
+        </xsl:when>
+        <xsl:otherwise/>
+      </xsl:choose>
+    </xsl:for-each>
+    </xsl:element>
+  </xsl:function>
+  <xsl:function name="e:get-name" as="xs:string">
+    <xsl:param name="name"/>
+    <xsl:choose>
+      <xsl:when test="$name/given-names[1] and $name/surname[1] and $name/suffix[1]">
+        <xsl:value-of select="concat($name/given-names[1],' ',$name/surname[1],' ',$name/suffix[1])"/>
+      </xsl:when>
+      <xsl:when test="not($name/given-names[1]) and $name/surname[1] and $name/suffix[1]">
+        <xsl:value-of select="concat($name/surname[1],' ',$name/suffix[1])"/>
+      </xsl:when>
+      <xsl:when test="$name/given-names[1] and $name/surname[1] and not($name/suffix[1])">
+        <xsl:value-of select="concat($name/given-names[1],' ',$name/surname[1])"/>
+      </xsl:when>
+      <xsl:when test="not($name/given-names[1]) and $name/surname[1] and not($name/suffix[1])">
+        <xsl:value-of select="$name/surname[1]"/>
+      </xsl:when>
+      <xsl:otherwise>
+        
+        <xsl:value-of select="'No elements present'"/>
+      </xsl:otherwise>
+    </xsl:choose>
+  </xsl:function>
+  <xsl:function name="e:get-collab">
+    <xsl:param name="collab"/>
+    <xsl:for-each select="$collab/(*|text())">
+      <xsl:choose>
+        <xsl:when test="./name()='contrib-group'"/>
+        <xsl:otherwise>
+          <xsl:value-of select="."/>
+        </xsl:otherwise>
+      </xsl:choose>
+    </xsl:for-each>
+  </xsl:function>
+  <xsl:function name="e:isbn-sum" as="xs:integer">
+    <xsl:param name="s" as="xs:string"/>
+    <xsl:choose>
+      <xsl:when test="string-length($s) = 10">
+        <xsl:variable name="d1" select="number(substring($s,1,1)) * 10"/>
+        <xsl:variable name="d2" select="number(substring($s,2,1)) * 9"/>
+        <xsl:variable name="d3" select="number(substring($s,3,1)) * 8"/>
+        <xsl:variable name="d4" select="number(substring($s,4,1)) * 7"/>
+        <xsl:variable name="d5" select="number(substring($s,5,1)) * 6"/>
+        <xsl:variable name="d6" select="number(substring($s,6,1)) * 5"/>
+        <xsl:variable name="d7" select="number(substring($s,7,1)) * 4"/>
+        <xsl:variable name="d8" select="number(substring($s,8,1)) * 3"/>
+        <xsl:variable name="d9" select="number(substring($s,9,1)) * 2"/>
+        <xsl:variable name="d10" select="number(substring($s,10,1)) * 1"/>
+        <xsl:value-of select="number($d1 + $d2 + $d3 + $d4 + $d5 + $d6 + $d7 + $d8 + $d9 + $d10) mod 11"/>
+      </xsl:when>
+      <xsl:when test="string-length($s) = 13">
+        <xsl:variable name="d1" select="number(substring($s,1,1))"/>
+        <xsl:variable name="d2" select="number(substring($s,2,1)) * 3"/>
+        <xsl:variable name="d3" select="number(substring($s,3,1))"/>
+        <xsl:variable name="d4" select="number(substring($s,4,1)) * 3"/>
+        <xsl:variable name="d5" select="number(substring($s,5,1))"/>
+        <xsl:variable name="d6" select="number(substring($s,6,1)) * 3"/>
+        <xsl:variable name="d7" select="number(substring($s,7,1))"/>
+        <xsl:variable name="d8" select="number(substring($s,8,1)) * 3"/>
+        <xsl:variable name="d9" select="number(substring($s,9,1))"/>
+        <xsl:variable name="d10" select="number(substring($s,10,1)) * 3"/>
+        <xsl:variable name="d11" select="number(substring($s,11,1))"/>
+        <xsl:variable name="d12" select="number(substring($s,12,1)) * 3"/>
+        <xsl:variable name="d13" select="number(substring($s,13,1))"/>
+        <xsl:value-of select="number($d1 + $d2 + $d3 + $d4 + $d5 + $d6 + $d7 + $d8 + $d9 + $d10 + $d11 + $d12 + $d13) mod 10"/>
+      </xsl:when>
+      <xsl:otherwise>
+        <xsl:value-of select="number('1')"/>
+      </xsl:otherwise>
+    </xsl:choose>
+  </xsl:function>
+  <xsl:function name="e:escape-for-regex" as="xs:string">
+    <xsl:param name="arg" as="xs:string?"/>
+    <xsl:sequence select="replace($arg,'(\.|\[|\]|\\|\||\-|\^|\$|\?|\*|\+|\{|\}|\(|\))','\\$1')"/>
+  </xsl:function>
+  <xsl:function name="e:get-ordinal" as="xs:string">
+    <xsl:param name="value" as="xs:integer?"/>
+    <xsl:if test="translate(string($value), '0123456789', '') = '' and number($value) &gt; 0">
+      <xsl:variable name="mod100" select="$value mod 100"/>
+      <xsl:variable name="mod10" select="$value mod 10"/>
+      <xsl:choose>
+        <xsl:when test="$mod100 = 11 or $mod100 = 12 or $mod100 = 13">
+          <xsl:value-of select="concat($value,'th')"/>
+        </xsl:when>
+        <xsl:when test="$mod10 = 1">
+          <xsl:value-of select="concat($value,'st')"/>
+        </xsl:when>
+        <xsl:when test="$mod10 = 2">
+          <xsl:value-of select="concat($value,'nd')"/>
+        </xsl:when>
+        <xsl:when test="$mod10 = 3">
+          <xsl:value-of select="concat($value,'rd')"/>
+        </xsl:when>
+        <xsl:otherwise>
+          <xsl:value-of select="concat($value,'th')"/>
+        </xsl:otherwise>
+      </xsl:choose>
+    </xsl:if>
+  </xsl:function>
+  <let name="org-regex" value="'b\.\p{Zs}?subtilis|bacillus\p{Zs}?subtilis|d\.\p{Zs}?melanogaster|drosophila\p{Zs}?melanogaster|e\.\p{Zs}?coli|escherichia\p{Zs}?coli|s\.\p{Zs}?pombe|schizosaccharomyces\p{Zs}?pombe|s\.\p{Zs}?cerevisiae|saccharomyces\p{Zs}?cerevisiae|c\.\p{Zs}?elegans|caenorhabditis\p{Zs}?elegans|a\.\p{Zs}?thaliana|arabidopsis\p{Zs}?thaliana|m\.\p{Zs}?thermophila|myceliophthora\p{Zs}?thermophila|dictyostelium|p\.\p{Zs}?falciparum|plasmodium\p{Zs}?falciparum|s\.\p{Zs}?enterica|salmonella\p{Zs}?enterica|s\.\p{Zs}?pyogenes|streptococcus\p{Zs}?pyogenes|p\.\p{Zs}?dumerilii|platynereis\p{Zs}?dumerilii|p\.\p{Zs}?cynocephalus|papio\p{Zs}?cynocephalus|o\.\p{Zs}?fasciatus|oncopeltus\p{Zs}?fasciatus|n\.\p{Zs}?crassa|neurospora\p{Zs}?crassa|c\.\p{Zs}?intestinalis|ciona\p{Zs}?intestinalis|e\.\p{Zs}?cuniculi|encephalitozoon\p{Zs}?cuniculi|h\.\p{Zs}?salinarum|halobacterium\p{Zs}?salinarum|s\.\p{Zs}?solfataricus|sulfolobus\p{Zs}?solfataricus|s\.\p{Zs}?mediterranea|schmidtea\p{Zs}?mediterranea|s\.\p{Zs}?rosetta|salpingoeca\p{Zs}?rosetta|n\.\p{Zs}?vectensis|nematostella\p{Zs}?vectensis|s\.\p{Zs}?aureus|staphylococcus\p{Zs}?aureus|v\.\p{Zs}?cholerae|vibrio\p{Zs}?cholerae|t\.\p{Zs}?thermophila|tetrahymena\p{Zs}?thermophila|c\.\p{Zs}?reinhardtii|chlamydomonas\p{Zs}?reinhardtii|n\.\p{Zs}?attenuata|nicotiana\p{Zs}?attenuata|e\.\p{Zs}?carotovora|erwinia\p{Zs}?carotovora|e\.\p{Zs}?faecalis|h\.\p{Zs}?sapiens|homo\p{Zs}?sapiens|c\.\p{Zs}?trachomatis|chlamydia\p{Zs}?trachomatis|enterococcus\p{Zs}?faecalis|x\.\p{Zs}?laevis|xenopus\p{Zs}?laevis|x\.\p{Zs}?tropicalis|xenopus\p{Zs}?tropicalis|m\.\p{Zs}?musculus|mus\p{Zs}?musculus|d\.\p{Zs}?immigrans|drosophila\p{Zs}?immigrans|d\.\p{Zs}?subobscura|drosophila\p{Zs}?subobscura|d\.\p{Zs}?affinis|drosophila\p{Zs}?affinis|d\.\p{Zs}?obscura|drosophila\p{Zs}?obscura|f\.\p{Zs}?tularensis|francisella\p{Zs}?tularensis|p\.\p{Zs}?plantaginis|podosphaera\p{Zs}?plantaginis|p\.\p{Zs}?lanceolata|plantago\p{Zs}?lanceolata|m\.\p{Zs}?trossulus|mytilus\p{Zs}?trossulus|m\.\p{Zs}?edulis|mytilus\p{Zs}?edulis|m\.\p{Zs}?chilensis|mytilus\p{Zs}?chilensis|u\.\p{Zs}?maydis|ustilago\p{Zs}?maydis|p\.\p{Zs}?knowlesi|plasmodium\p{Zs}?knowlesi|p\.\p{Zs}?aeruginosa|pseudomonas\p{Zs}?aeruginosa|t\.\p{Zs}?brucei|trypanosoma\p{Zs}?brucei|t\.\p{Zs}?gondii|toxoplasma\p{Zs}?gondii|d\.\p{Zs}?rerio|danio\p{Zs}?rerio|yimenosaurus|lesothosaurus\p{Zs}?diagnosticus|l\.\p{Zs}?diagnosticus|scelidosaurus\p{Zs}?harrisonii|s\.\p{Zs}?harrisonii|haya\p{Zs}?griva|h\.\p{Zs}?griva|polacanthus\p{Zs}?foxii|p\.\p{Zs}?foxii|scutellosaurus\p{Zs}?lawleri|s\.\p{Zs}?lawleri|saichania\p{Zs}?chulsanensis|s\.\p{Zs}?chulsanensis|gargoyleosaurus\p{Zs}?parkpinorum|g\.\p{Zs}?parkpinorum|europelta\p{Zs}?carbonensis|e\.\p{Zs}?carbonensis|stegosaurus\p{Zs}?stenops|s\.\p{Zs}?stenops|pinacosaurus\p{Zs}?grangeri|p\.\p{Zs}?grangeri|tatisaurus\p{Zs}?oehleri|t\.\p{Zs}?oehleri|hungarosaurus\p{Zs}?tormai|h\.\p{Zs}?tormai|bienosaurus\p{Zs}?lufengensis|b\.\p{Zs}?lufengensis|fabrosaurus\p{Zs}?australis|f\.\p{Zs}?australis|chinshakiangosaurus\p{Zs}?chunghoensis|c\.\p{Zs}?chunghoensis|euoplocephalus\p{Zs}?tutus|e\.\p{Zs}?tutus|drosophila|xenopus|salmonella|g\.\p{Zs}?beringei|gorilla\p{Zs}?beringei|m\.\p{Zs}?assamensis|macaca\p{Zs}?assamensis|m\.\p{Zs}?fuscata|macaca\p{Zs}?fuscata|m\.\p{Zs}?mulatta|macaca\p{Zs}?mulatta|m\.\p{Zs}?nemestrina|macaca\p{Zs}?nemestrina|m\.\p{Zs}?sphinx|mandrillus\p{Zs}?sphinx|p\.\p{Zs}?anubis|papio\p{Zs}?anubis|p\.\p{Zs}?hamadryas|papio\p{Zs}?hamadryas|p\.\p{Zs}?paniscus|pan\p{Zs}?paniscus|p\.\p{Zs}?troglodytes|pan\p{Zs}?troglodytes'"/>
+  <let name="sec-title-regex" value="string-join(     for $x in tokenize($org-regex,'\|')     return concat('^',$x,'$')     ,'|')"/>
+  <xsl:function name="e:org-conform" as="xs:string">
+  <xsl:param name="s" as="xs:string"/>
+  <xsl:choose>
+    <xsl:when test="matches($s,'b\.\p{Zs}?subtilis')">
+      <xsl:value-of select="'B. subtilis'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'bacillus\p{Zs}?subtilis')">
+      <xsl:value-of select="'Bacillus subtilis'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'d\.\p{Zs}?melanogaster')">
+      <xsl:value-of select="'D. melanogaster'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'drosophila\p{Zs}?melanogaster')">
+      <xsl:value-of select="'Drosophila melanogaster'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'e\.\p{Zs}?coli')">
+      <xsl:value-of select="'E. coli'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'escherichia\p{Zs}?coli')">
+      <xsl:value-of select="'Escherichia coli'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'s\.\p{Zs}?pombe')">
+      <xsl:value-of select="'S. pombe'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'schizosaccharomyces\p{Zs}?pombe')">
+      <xsl:value-of select="'Schizosaccharomyces pombe'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'s\.\p{Zs}?cerevisiae')">
+      <xsl:value-of select="'S. cerevisiae'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'saccharomyces\p{Zs}?cerevisiae')">
+      <xsl:value-of select="'Saccharomyces cerevisiae'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'c\.\p{Zs}?elegans')">
+      <xsl:value-of select="'C. elegans'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'caenorhabditis\p{Zs}?elegans')">
+      <xsl:value-of select="'Caenorhabditis elegans'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'a\.\p{Zs}?thaliana')">
+      <xsl:value-of select="'A. thaliana'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'arabidopsis\p{Zs}?thaliana')">
+      <xsl:value-of select="'Arabidopsis thaliana'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'m\.\p{Zs}?thermophila')">
+      <xsl:value-of select="'M. thermophila'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'myceliophthora\p{Zs}?thermophila')">
+      <xsl:value-of select="'Myceliophthora thermophila'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'dictyostelium')">
+      <xsl:value-of select="'Dictyostelium'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'p\.\p{Zs}?falciparum')">
+      <xsl:value-of select="'P. falciparum'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'plasmodium\p{Zs}?falciparum')">
+      <xsl:value-of select="'Plasmodium falciparum'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'s\.\p{Zs}?enterica')">
+      <xsl:value-of select="'S. enterica'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'salmonella\p{Zs}?enterica')">
+      <xsl:value-of select="'Salmonella enterica'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'s\.\p{Zs}?pyogenes')">
+      <xsl:value-of select="'S. pyogenes'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'streptococcus\p{Zs}?pyogenes')">
+      <xsl:value-of select="'Streptococcus pyogenes'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'p\.\p{Zs}?dumerilii')">
+      <xsl:value-of select="'P. dumerilii'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'platynereis\p{Zs}?dumerilii')">
+      <xsl:value-of select="'Platynereis dumerilii'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'p\.\p{Zs}?cynocephalus')">
+      <xsl:value-of select="'P. cynocephalus'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'papio\p{Zs}?cynocephalus')">
+      <xsl:value-of select="'Papio cynocephalus'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'o\.\p{Zs}?fasciatus')">
+      <xsl:value-of select="'O. fasciatus'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'oncopeltus\p{Zs}?fasciatus')">
+      <xsl:value-of select="'Oncopeltus fasciatus'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'n\.\p{Zs}?crassa')">
+      <xsl:value-of select="'N. crassa'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'neurospora\p{Zs}?crassa')">
+      <xsl:value-of select="'Neurospora crassa'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'c\.\p{Zs}?intestinalis')">
+      <xsl:value-of select="'C. intestinalis'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'ciona\p{Zs}?intestinalis')">
+      <xsl:value-of select="'Ciona intestinalis'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'e\.\p{Zs}?cuniculi')">
+      <xsl:value-of select="'E. cuniculi'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'encephalitozoon\p{Zs}?cuniculi')">
+      <xsl:value-of select="'Encephalitozoon cuniculi'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'h\.\p{Zs}?salinarum')">
+      <xsl:value-of select="'H. salinarum'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'halobacterium\p{Zs}?salinarum')">
+      <xsl:value-of select="'Halobacterium salinarum'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'s\.\p{Zs}?solfataricus')">
+      <xsl:value-of select="'S. solfataricus'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'sulfolobus\p{Zs}?solfataricus')">
+      <xsl:value-of select="'Sulfolobus solfataricus'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'s\.\p{Zs}?mediterranea')">
+      <xsl:value-of select="'S. mediterranea'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'schmidtea\p{Zs}?mediterranea')">
+      <xsl:value-of select="'Schmidtea mediterranea'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'s\.\p{Zs}?rosetta')">
+      <xsl:value-of select="'S. rosetta'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'salpingoeca\p{Zs}?rosetta')">
+      <xsl:value-of select="'Salpingoeca rosetta'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'n\.\p{Zs}?vectensis')">
+      <xsl:value-of select="'N. vectensis'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'nematostella\p{Zs}?vectensis')">
+      <xsl:value-of select="'Nematostella vectensis'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'s\.\p{Zs}?aureus')">
+      <xsl:value-of select="'S. aureus'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'staphylococcus\p{Zs}?aureus')">
+      <xsl:value-of select="'Staphylococcus aureus'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'v\.\p{Zs}?cholerae')">
+      <xsl:value-of select="'V. cholerae'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'vibrio\p{Zs}?cholerae')">
+      <xsl:value-of select="'Vibrio cholerae'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'t\.\p{Zs}?thermophila')">
+      <xsl:value-of select="'T. thermophila'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'tetrahymena\p{Zs}?thermophila')">
+      <xsl:value-of select="'Tetrahymena thermophila'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'c\.\p{Zs}?reinhardtii')">
+      <xsl:value-of select="'C. reinhardtii'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'chlamydomonas\p{Zs}?reinhardtii')">
+      <xsl:value-of select="'Chlamydomonas reinhardtii'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'n\.\p{Zs}?attenuata')">
+      <xsl:value-of select="'N. attenuata'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'nicotiana\p{Zs}?attenuata')">
+      <xsl:value-of select="'Nicotiana attenuata'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'e\.\p{Zs}?carotovora')">
+      <xsl:value-of select="'E. carotovora'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'erwinia\p{Zs}?carotovora')">
+      <xsl:value-of select="'Erwinia carotovora'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'e\.\p{Zs}?faecalis')">
+      <xsl:value-of select="'E. faecalis'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'h\.\p{Zs}?sapiens')">
+      <xsl:value-of select="'H. sapiens'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'homo\p{Zs}?sapiens')">
+      <xsl:value-of select="'Homo sapiens'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'c\.\p{Zs}?trachomatis')">
+      <xsl:value-of select="'C. trachomatis'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'chlamydia\p{Zs}?trachomatis')">
+      <xsl:value-of select="'Chlamydia trachomatis'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'enterococcus\p{Zs}?faecalis')">
+      <xsl:value-of select="'Enterococcus faecalis'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'x\.\p{Zs}?laevis')">
+      <xsl:value-of select="'X. laevis'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'xenopus\p{Zs}?laevis')">
+      <xsl:value-of select="'Xenopus laevis'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'x\.\p{Zs}?tropicalis')">
+      <xsl:value-of select="'X. tropicalis'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'xenopus\p{Zs}?tropicalis')">
+      <xsl:value-of select="'Xenopus tropicalis'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'m\.\p{Zs}?musculus')">
+      <xsl:value-of select="'M. musculus'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'mus\p{Zs}?musculus')">
+      <xsl:value-of select="'Mus musculus'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'d\.\p{Zs}?immigrans')">
+      <xsl:value-of select="'D. immigrans'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'drosophila\p{Zs}?immigrans')">
+      <xsl:value-of select="'Drosophila immigrans'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'d\.\p{Zs}?subobscura')">
+      <xsl:value-of select="'D. subobscura'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'drosophila\p{Zs}?subobscura')">
+      <xsl:value-of select="'Drosophila subobscura'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'d\.\p{Zs}?affinis')">
+      <xsl:value-of select="'D. affinis'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'drosophila\p{Zs}?affinis')">
+      <xsl:value-of select="'Drosophila affinis'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'d\.\p{Zs}?obscura')">
+      <xsl:value-of select="'D. obscura'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'drosophila\p{Zs}?obscura')">
+      <xsl:value-of select="'Drosophila obscura'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'f\.\p{Zs}?tularensis')">
+      <xsl:value-of select="'F. tularensis'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'francisella\p{Zs}?tularensis')">
+      <xsl:value-of select="'Francisella tularensis'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'p\.\p{Zs}?plantaginis')">
+      <xsl:value-of select="'P. plantaginis'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'podosphaera\p{Zs}?plantaginis')">
+      <xsl:value-of select="'Podosphaera plantaginis'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'p\.\p{Zs}?lanceolata')">
+      <xsl:value-of select="'P. lanceolata'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'plantago\p{Zs}?lanceolata')">
+      <xsl:value-of select="'Plantago lanceolata'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'m\.\p{Zs}?trossulus')">
+      <xsl:value-of select="'M. trossulus'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'mytilus\p{Zs}?trossulus')">
+      <xsl:value-of select="'Mytilus trossulus'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'m\.\p{Zs}?edulis')">
+      <xsl:value-of select="'M. edulis'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'mytilus\p{Zs}?edulis')">
+      <xsl:value-of select="'Mytilus edulis'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'m\.\p{Zs}?chilensis')">
+      <xsl:value-of select="'M. chilensis'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'mytilus\p{Zs}?chilensis')">
+      <xsl:value-of select="'Mytilus chilensis'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'u\.\p{Zs}?maydis')">
+      <xsl:value-of select="'U. maydis'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'ustilago\p{Zs}?maydis')">
+      <xsl:value-of select="'Ustilago maydis'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'p\.\p{Zs}?knowlesi')">
+      <xsl:value-of select="'P. knowlesi'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'plasmodium\p{Zs}?knowlesi')">
+      <xsl:value-of select="'Plasmodium knowlesi'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'p\.\p{Zs}?aeruginosa')">
+      <xsl:value-of select="'P. aeruginosa'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'pseudomonas\p{Zs}?aeruginosa')">
+      <xsl:value-of select="'Pseudomonas aeruginosa'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'t\.\p{Zs}?brucei')">
+      <xsl:value-of select="'T. brucei'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'trypanosoma\p{Zs}?brucei')">
+      <xsl:value-of select="'Trypanosoma brucei'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'caulobacter\p{Zs}?crescentus')">
+      <xsl:value-of select="'Caulobacter crescentus'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'c\.\p{Zs}?crescentus')">
+      <xsl:value-of select="'C. crescentus'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'agrobacterium\p{Zs}?tumefaciens')">
+      <xsl:value-of select="'Agrobacterium tumefaciens'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'a\.\p{Zs}?tumefaciens')">
+      <xsl:value-of select="'A. tumefaciens'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'t\.\p{Zs}?gondii')">
+      <xsl:value-of select="'T. gondii'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'toxoplasma\p{Zs}?gondii')">
+      <xsl:value-of select="'Toxoplasma gondii'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'d\.\p{Zs}?rerio')">
+      <xsl:value-of select="'D. rerio'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'danio\p{Zs}?rerio')">
+      <xsl:value-of select="'Danio rerio'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'drosophila')">
+      <xsl:value-of select="'Drosophila'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'yimenosaurus')">
+      <xsl:value-of select="'Yimenosaurus'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'lesothosaurus\p{Zs}?diagnosticus')">
+      <xsl:value-of select="'Lesothosaurus diagnosticus'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'l.\p{Zs}?diagnosticus')">
+      <xsl:value-of select="'L. diagnosticus'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'scelidosaurus\p{Zs}?harrisonii')">
+      <xsl:value-of select="'Scelidosaurus harrisonii'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'s.\p{Zs}?harrisonii')">
+      <xsl:value-of select="'S. harrisonii'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'haya\p{Zs}?griva')">
+      <xsl:value-of select="'Haya griva'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'h.\p{Zs}?griva')">
+      <xsl:value-of select="'H. griva'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'polacanthus\p{Zs}?foxii')">
+      <xsl:value-of select="'Polacanthus foxii'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'p.\p{Zs}?foxii')">
+      <xsl:value-of select="'P. foxii'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'scutellosaurus\p{Zs}?lawleri')">
+      <xsl:value-of select="'Scutellosaurus lawleri'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'s.\p{Zs}?lawleri')">
+      <xsl:value-of select="'S. lawleri'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'saichania\p{Zs}?chulsanensis')">
+      <xsl:value-of select="'Saichania chulsanensis'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'s.\p{Zs}?chulsanensis')">
+      <xsl:value-of select="'S. chulsanensis'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'gargoyleosaurus\p{Zs}?parkpinorum')">
+      <xsl:value-of select="'Gargoyleosaurus parkpinorum'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'g.\p{Zs}?parkpinorum')">
+      <xsl:value-of select="'G. parkpinorum'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'europelta\p{Zs}?carbonensis')">
+      <xsl:value-of select="'Europelta carbonensis'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'e.\p{Zs}?carbonensis')">
+      <xsl:value-of select="'E. carbonensis'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'stegosaurus\p{Zs}?stenops')">
+      <xsl:value-of select="'Stegosaurus stenops'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'s.\p{Zs}?stenops')">
+      <xsl:value-of select="'S. stenops'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'pinacosaurus\p{Zs}?grangeri')">
+      <xsl:value-of select="'Pinacosaurus grangeri'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'p.\p{Zs}?grangeri')">
+      <xsl:value-of select="'P. grangeri'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'tatisaurus\p{Zs}?oehleri')">
+      <xsl:value-of select="'Tatisaurus oehleri'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'t.\p{Zs}?oehleri')">
+      <xsl:value-of select="'T. oehleri'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'hungarosaurus\p{Zs}?tormai')">
+      <xsl:value-of select="'Hungarosaurus tormai'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'h.\p{Zs}?tormai')">
+      <xsl:value-of select="'H. tormai'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'lesothosaurus\p{Zs}?diagnosticus')">
+      <xsl:value-of select="'Lesothosaurus diagnosticus'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'l.\p{Zs}?diagnosticus')">
+      <xsl:value-of select="'L. diagnosticus'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'bienosaurus\p{Zs}?lufengensis')">
+      <xsl:value-of select="'Bienosaurus lufengensis'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'b.\p{Zs}?lufengensis')">
+      <xsl:value-of select="'B. lufengensis'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'fabrosaurus\p{Zs}?australis')">
+      <xsl:value-of select="'Fabrosaurus australis'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'f.\p{Zs}?australis')">
+      <xsl:value-of select="'F. australis'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'chinshakiangosaurus\p{Zs}?chunghoensis')">
+      <xsl:value-of select="'Chinshakiangosaurus chunghoensis'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'c.\p{Zs}?chunghoensis')">
+      <xsl:value-of select="'C. chunghoensis'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'euoplocephalus\p{Zs}?tutus')">
+      <xsl:value-of select="'Euoplocephalus tutus'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'e.\p{Zs}?tutus')">
+      <xsl:value-of select="'E. tutus'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'g\.\p{Zs}?beringei')">
+      <xsl:value-of select="'G. beringei'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'gorilla\p{Zs}?beringei')">
+      <xsl:value-of select="'Gorilla beringei'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'m\.\p{Zs}?assamensis')">
+      <xsl:value-of select="'M. assamensis'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'macaca\p{Zs}?assamensis')">
+      <xsl:value-of select="'Macaca assamensis'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'m\.\p{Zs}?fuscata')">
+      <xsl:value-of select="'M. fuscata'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'macaca\p{Zs}?fuscata')">
+      <xsl:value-of select="'Macaca fuscata'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'m\.\p{Zs}?mulatta')">
+      <xsl:value-of select="'M. mulatta'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'macaca\p{Zs}?mulatta')">
+      <xsl:value-of select="'Macaca mulatta'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'m\.\p{Zs}?nemestrina')">
+      <xsl:value-of select="'M. nemestrina'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'macaca\p{Zs}?nemestrina')">
+      <xsl:value-of select="'Macaca nemestrina'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'m\.\p{Zs}?sphinx')">
+      <xsl:value-of select="'M. sphinx'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'mandrillus\p{Zs}?sphinx')">
+      <xsl:value-of select="'Mandrillus sphinx'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'p\.\p{Zs}?anubis')">
+      <xsl:value-of select="'P. anubis'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'papio\p{Zs}?anubis')">
+      <xsl:value-of select="'Papio anubis'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'p\.\p{Zs}?hamadryas')">
+      <xsl:value-of select="'P. hamadryas'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'papio\p{Zs}?hamadryas')">
+      <xsl:value-of select="'Papio hamadryas'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'p\.\p{Zs}?paniscus')">
+      <xsl:value-of select="'P. paniscus'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'pan\p{Zs}?paniscus')">
+      <xsl:value-of select="'Pan paniscus'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'p\.\p{Zs}?troglodytes')">
+      <xsl:value-of select="'P. troglodytes'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'pan\p{Zs}?troglodytes')">
+      <xsl:value-of select="'Pan troglodytes'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'xenopus')">
+      <xsl:value-of select="'Xenopus'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'salmonella')">
+      <xsl:value-of select="'Salmonella'"/>
+    </xsl:when>
+    <xsl:otherwise>
+      <xsl:value-of select="'undefined'"/>
+    </xsl:otherwise>
+  </xsl:choose>
+</xsl:function>
+  <xsl:function name="e:code-check">
+    <xsl:param name="s" as="xs:string"/>
+    <xsl:element name="code">
+      <xsl:if test="contains($s,'github')">
+        <xsl:element name="match">
+        <xsl:value-of select="'github '"/>
+        </xsl:element>
+      </xsl:if>
+      <xsl:if test="contains($s,'gitlab')">
+        <xsl:element name="match">
+        <xsl:value-of select="'gitlab '"/>
+        </xsl:element>
+      </xsl:if>
+      <xsl:if test="contains($s,'git.exeter.ac.uk')">
+        <xsl:element name="match">
+          <xsl:value-of select="'git.exeter.ac.uk '"/>
+        </xsl:element>
+      </xsl:if>
+      <xsl:if test="contains($s,'codeplex')">
+        <xsl:element name="match">
+        <xsl:value-of select="'codeplex '"/>
+        </xsl:element>
+      </xsl:if>
+      <xsl:if test="contains($s,'sourceforge')">
+        <xsl:element name="match">
+        <xsl:value-of select="'sourceforge '"/>
+        </xsl:element>
+      </xsl:if>
+      <xsl:if test="contains($s,'bitbucket')">
+        <xsl:element name="match">
+        <xsl:value-of select="'bitbucket '"/>
+        </xsl:element>
+      </xsl:if>
+      <xsl:if test="contains($s,'assembla ')">
+        <xsl:element name="match">
+        <xsl:value-of select="'assembla '"/>
+        </xsl:element>
+      </xsl:if>
+    </xsl:element>
+  </xsl:function>
+  <xsl:function name="e:get-xrefs">
+    <xsl:param name="article"/>
+    <xsl:param name="object-id"/>
+    <xsl:param name="object-type"/>
+    <xsl:variable name="object-no" select="replace($object-id,'[^0-9]','')"/>
+    <xsl:element name="matches">
+      <xsl:for-each select="$article//xref[(@ref-type=$object-type) and not(ancestor::caption)]">
+        <xsl:variable name="rid-no" select="replace(./@rid,'[^0-9]','')"/>
+        <xsl:variable name="text-no" select="tokenize(normalize-space(replace(.,'[^0-9]',' ')),'\p{Zs}')[last()]"/>
+        <xsl:choose>
+          <xsl:when test="./@rid = $object-id">
+            <xsl:element name="match">
+              <xsl:attribute name="sec-id">
+                <xsl:value-of select="./ancestor::sec[1]/@id"/>
+              </xsl:attribute>
+              <xsl:value-of select="self::*"/>
+            </xsl:element>
+          </xsl:when>
+          <xsl:when test="contains(./@rid,'app')"/>
+          <xsl:when test="($rid-no lt $object-no) and (./following-sibling::text()[1] = '–') and (./following-sibling::*[1]/name()='xref') and (number(replace(replace(./following-sibling::xref[1]/@rid,'\-','.'),'[a-z]','')) gt number($object-no))">
+            <xsl:element name="match">
+              <xsl:attribute name="sec-id">
+                <xsl:value-of select="./ancestor::sec[1]/@id"/>
+              </xsl:attribute>
+              <xsl:value-of select="self::*"/>
+            </xsl:element>
+          </xsl:when>
+          <xsl:when test="($rid-no lt $object-no) and contains(.,$object-no) and (contains(.,'Videos') or contains(.,'videos') and contains(.,'–'))">
+            <xsl:element name="match">
+              <xsl:attribute name="sec-id">
+                <xsl:value-of select="./ancestor::sec[1]/@id"/>
+              </xsl:attribute>
+              <xsl:value-of select="self::*"/>
+            </xsl:element>
+          </xsl:when>
+          <xsl:when test="($rid-no lt $object-no) and (contains(.,'Videos') or contains(.,'videos') and contains(.,'—')) and ($text-no gt $object-no)">
+            <xsl:element name="match">
+              <xsl:attribute name="sec-id">
+                <xsl:value-of select="./ancestor::sec[1]/@id"/>
+              </xsl:attribute>
+              <xsl:value-of select="self::*"/>
+            </xsl:element>
+          </xsl:when>
+          <xsl:otherwise/>
+        </xsl:choose>
+      </xsl:for-each>
+    </xsl:element>
+  </xsl:function>
+  <xsl:function name="e:get-iso-pub-date">
+    <xsl:param name="element"/>
+    <xsl:choose>
+      <xsl:when test="$element/ancestor-or-self::article//article-meta/pub-date[(@date-type='publication') or (@date-type='pub')]/month">
+        <xsl:variable name="pub-date" select="$element/ancestor-or-self::article//article-meta/pub-date[(@date-type='publication') or (@date-type='pub')]"/>
+        <xsl:value-of select="concat($pub-date/year,'-',$pub-date/month,'-',$pub-date/day)"/>
+      </xsl:when>
+      <xsl:otherwise/>
+    </xsl:choose>
+  </xsl:function>
+  <xsl:function name="e:get-copyright-holder">
+    <xsl:param name="contrib-group"/>
+    <xsl:variable name="author-count" select="count($contrib-group/contrib[@contrib-type='author'])"/>
+    <xsl:choose>
+      <xsl:when test="$author-count lt 1"/>
+      <xsl:when test="$author-count = 1">
+        <xsl:choose>
+          <xsl:when test="$contrib-group/contrib[@contrib-type='author']/collab">
+            <xsl:value-of select="$contrib-group/contrib[@contrib-type='author']/collab[1]/text()[1]"/>
+          </xsl:when>
+          <xsl:otherwise>
+            <xsl:value-of select="$contrib-group/contrib[@contrib-type='author']/name[1]/surname[1]"/>
+          </xsl:otherwise>
+        </xsl:choose>
+      </xsl:when>
+      <xsl:when test="$author-count = 2">
+        <xsl:choose>
+          <xsl:when test="$contrib-group/contrib[@contrib-type='author']/collab">
+            <xsl:choose>
+              <xsl:when test="$contrib-group/contrib[@contrib-type='author'][1]/collab and $contrib-group/contrib[@contrib-type='author'][2]/collab">
+                <xsl:value-of select="concat($contrib-group/contrib[@contrib-type='author']/collab[1]/text()[1],' and ',$contrib-group/contrib[@contrib-type='author']/collab[2]/text()[1])"/>
+              </xsl:when>
+              <xsl:when test="$contrib-group/contrib[@contrib-type='author'][1]/collab">
+                <xsl:value-of select="concat($contrib-group/contrib[@contrib-type='author'][1]/collab[1]/text()[1],' and ',$contrib-group/contrib[@contrib-type='author'][2]/name[1]/surname[1])"/>
+              </xsl:when>
+              <xsl:otherwise>
+                <xsl:value-of select="concat($contrib-group/contrib[@contrib-type='author'][1]/name[1]/surname[1],' and ',$contrib-group/contrib[@contrib-type='author'][2]/collab[1]/text()[1])"/>
+              </xsl:otherwise>
+            </xsl:choose>
+          </xsl:when>
+          <xsl:otherwise>
+            <xsl:value-of select="concat($contrib-group/contrib[@contrib-type='author'][1]/name[1]/surname[1],' and ',$contrib-group/contrib[@contrib-type='author'][2]/name[1]/surname[1])"/>
+          </xsl:otherwise>
+        </xsl:choose>
+      </xsl:when>
+      
+      <xsl:otherwise>
+        <xsl:variable name="is-equal-contrib" select="if ($contrib-group/contrib[@contrib-type='author'][1]/@equal-contrib='yes') then true() else false()"/>
+        <xsl:choose>
+          <xsl:when test="$is-equal-contrib">
+            
+            <xsl:variable name="equal-contrib-rid" select="$contrib-group/contrib[@contrib-type='author'][1]/xref[starts-with(@rid,'equal-contrib')]/@rid"/>
+            <xsl:variable name="first-authors" select="$contrib-group/contrib[@contrib-type='author' and @equal-contrib='yes' and xref[@rid=$equal-contrib-rid] and not(preceding-sibling::contrib[not(xref[@rid=$equal-contrib-rid])])]"/>
+            <xsl:choose>
+              
+              <xsl:when test="$author-count = 3 and count($first-authors) = 3">
+                <xsl:value-of select="concat(e:get-surname($contrib-group/contrib[@contrib-type='author'][1]),                   ', ',                   e:get-surname($contrib-group/contrib[@contrib-type='author'][2]),                   ' and ',                   e:get-surname($contrib-group/contrib[@contrib-type='author'][3]))"/>
+              </xsl:when>
+              
+              <xsl:when test="count($first-authors) gt 3">
+                <xsl:variable name="first-auth-string" select="string-join(for $auth in $contrib-group/contrib[@contrib-type='author'][position() lt 4] return e:get-surname($auth),', ')"/>
+                <xsl:value-of select="concat($first-auth-string,' et al')"/>
+              </xsl:when>
+              
+              <xsl:otherwise>
+                <xsl:variable name="first-auth-string" select="string-join(for $auth in $first-authors return e:get-surname($auth),', ')"/>
+                <xsl:value-of select="concat($first-auth-string,' et al')"/>
+              </xsl:otherwise>
+            </xsl:choose>
+          </xsl:when>
+          
+          <xsl:otherwise>
+            <xsl:value-of select="concat(e:get-surname($contrib-group/contrib[@contrib-type='author'][1]),' et al')"/>
+          </xsl:otherwise>
+        </xsl:choose>
+      </xsl:otherwise>
+    </xsl:choose>
+  </xsl:function>
+  <xsl:function name="e:get-surname" as="text()">
+    <xsl:param name="contrib"/>
+    <xsl:choose>
+      <xsl:when test="$contrib/collab">
+        <xsl:value-of select="$contrib/collab[1]/text()[1]"/>
+      </xsl:when>
+      <xsl:otherwise>
+        <xsl:value-of select="$contrib//name[1]/surname[1]"/>
+      </xsl:otherwise>
+    </xsl:choose>
+  </xsl:function>
+  <xsl:function name="e:insight-box" as="element()">
+    <xsl:param name="box" as="xs:string"/>
+    <xsl:param name="cite-text" as="xs:string"/>
+    <xsl:variable name="box-text" select="substring-after(substring-after($box,'article'),' ')"/> 
+    
+    <xsl:element name="list">
+      <xsl:for-each select="tokenize($cite-text,'\p{Zs}')">
+        <xsl:choose>
+          <xsl:when test="contains($box-text,.)"/>
+          <xsl:otherwise>
+            <xsl:element name="item">
+              <xsl:attribute name="type">cite</xsl:attribute>
+              <xsl:value-of select="."/>
+            </xsl:element>
+          </xsl:otherwise>
+        </xsl:choose>
+      </xsl:for-each>
+      <xsl:for-each select="tokenize($box-text,'\p{Zs}')">
+        <xsl:choose>
+          <xsl:when test="contains($cite-text,.)"/>
+          <xsl:otherwise>
+            <xsl:element name="item">
+              <xsl:attribute name="type">box</xsl:attribute>
+              <xsl:value-of select="."/>
+            </xsl:element>
+          </xsl:otherwise>
+        </xsl:choose>
+      </xsl:for-each>
+    </xsl:element>
+  </xsl:function>
+  <let name="latin-regex" value="'in\p{Zs}+vitro|ex\p{Zs}+vitro|in\p{Zs}+vivo|ex\p{Zs}+vivo|a\p{Zs}+priori|a\p{Zs}+posteriori|de\p{Zs}+novo|in\p{Zs}+utero|in\p{Zs}+natura|in\p{Zs}+situ|in\p{Zs}+planta|in\p{Zs}+cellulo|rete\p{Zs}+mirabile|nomen\p{Zs}+novum| sensu |ad\p{Zs}+libitum|in\p{Zs}+ovo'"/>
+  <xsl:function name="e:get-latin-terms" as="element()">
+    <xsl:param name="article" as="element()"/>
+    <xsl:param name="regex" as="xs:string"/>
+    
+    <xsl:variable name="roman-text" select="lower-case(       string-join(for $x in $article/*[local-name() = 'body' or local-name() = 'back']//*       return       if ($x/ancestor-or-self::sec[@sec-type='additional-information']) then ()       else if ($x/ancestor-or-self::ref-list) then ()       else if ($x/local-name() = 'italic') then ()       else $x/text(),' '))"/>
+    <xsl:variable name="italic-text" select="lower-case(string-join($article//*:italic[not(ancestor::ref-list) and not(ancestor::sec[@sec-type='additional-information'])],' '))"/>
+    
+    
+    <xsl:element name="result">
+      <xsl:choose>
+        <xsl:when test="matches($roman-text,$regex)">
+          <xsl:element name="list">
+            <xsl:attribute name="list-type">roman</xsl:attribute>
+            <xsl:for-each select="tokenize($regex,'\|')">
+              <xsl:variable name="display" select="replace(replace(.,'\\p\{Zs\}\+',' '),'^ | $','')"/>
+              <xsl:element name="match">
+                <xsl:attribute name="count">
+                  <xsl:value-of select="count(tokenize($roman-text,.)) - 1"/>
+                </xsl:attribute>
+                <xsl:value-of select="$display"/>
+              </xsl:element>
+            </xsl:for-each>
+          </xsl:element>
+        </xsl:when>
+        <xsl:otherwise>
+          <xsl:element name="list">
+            <xsl:attribute name="list-type">roman</xsl:attribute>
+          </xsl:element>
+        </xsl:otherwise>
+      </xsl:choose>
+      <xsl:choose>
+        <xsl:when test="matches($italic-text,$regex)">
+          <xsl:element name="list">
+            <xsl:attribute name="list-type">italic</xsl:attribute>
+            <xsl:for-each select="tokenize($regex,'\|')">
+              <xsl:variable name="display" select="replace(.,'\\p\{Zs\}\+',' ')"/>
+              <xsl:element name="match">
+                <xsl:attribute name="count">
+                  <xsl:value-of select="count(tokenize($italic-text,.)) - 1"/>
+                </xsl:attribute>
+                <xsl:value-of select="$display"/>
+              </xsl:element>
+            </xsl:for-each>
+          </xsl:element>
+        </xsl:when>
+        <xsl:otherwise>
+          <xsl:element name="list">
+            <xsl:attribute name="list-type">italic</xsl:attribute>
+          </xsl:element>
+        </xsl:otherwise>
+      </xsl:choose>
+    </xsl:element>
+  </xsl:function>
+  <xsl:function name="e:print-latin-terms" as="xs:string">
+    <xsl:param name="list" as="element()"/>
+    <xsl:value-of select="string-join(       for $term in $list//*:match[@count != '0']        return if (number($term/@count) gt 1) then concat($term/@count,' instances of ',$term)       else concat($term/@count,' instance of ',$term)       ,', ')"/>
+  </xsl:function>
+  <xsl:function name="e:list-panels">
+    <xsl:param name="caption" as="xs:string"/>
+    <xsl:element name="list">
+      <xsl:for-each select="tokenize($caption,'\.\p{Zs}+')">
+        <xsl:if test="matches(.,'^[B-K]\p{P}?[A-K]?\.?\p{Zs}+')">
+          <xsl:element name="item">
+            <xsl:attribute name="token">
+              <xsl:value-of select="substring-before(.,' ')"/>
+            </xsl:attribute>
+            <xsl:value-of select="."/>
+          </xsl:element>
+        </xsl:if>
+      </xsl:for-each>
+    </xsl:element>
+  </xsl:function>
+  <xsl:function name="e:get-weekday" as="xs:integer?">
+    <xsl:param name="date" as="xs:anyAtomicType?"/>
+    <xsl:sequence select="       if (empty($date)) then ()       else xs:integer((xs:date($date) - xs:date('1901-01-06')) div xs:dayTimeDuration('P1D')) mod 7       "/>
+  </xsl:function>
+  <xsl:function name="e:line-count" as="xs:integer">
+    <xsl:param name="arg" as="xs:string?"/>
+    
+    <xsl:sequence select="count(tokenize($arg,'(\r\n?|\n\r?)'))"/>
+    
+  </xsl:function>
+  <pattern id="article-metadata">
+    <rule context="pub-date" id="pub-date-tests">
+      <let name="allowed-attributes" value="('publication-format','date-type','iso-8601-date')"/>
+      <report test="@*[not(name()=$allowed-attributes)]" role="error" id="pub-date-test-2">Only the following attributes are permitted on pub-date. This one has the following unallowed attributes: <value-of select="string-join(@*[not(name()=$allowed-attributes)]/name(),'; ')"/>.</report>
+    </rule>
+  </pattern>
+  <pattern id="root-pattern">
+    <rule context="root" id="root-rule">
+      <assert test="descendant::pub-date" role="error" id="pub-date-tests-xspec-assert">pub-date must be present.</assert>
+    </rule>
+  </pattern>
+</schema>
\ No newline at end of file
diff --git a/test/tests/gen/pub-date-tests/pub-date-test-3/fail.xml b/test/tests/gen/pub-date-tests/pub-date-test-3/fail.xml
new file mode 100644
index 0000000000..167976861a
--- /dev/null
+++ b/test/tests/gen/pub-date-tests/pub-date-test-3/fail.xml
@@ -0,0 +1,15 @@
+<?oxygen SCHSchema="pub-date-test-3.sch"?>
+<!--Context: pub-date
+Test: report    @publication-format and @publication-format!='electronic'
+Message: pub-date has the attribute publication-format, but the value is "". The only permitted value is "electronic". -->
+<root xmlns:ali="http://www.niso.org/schemas/ali/1.0/" xmlns:mml="http://www.w3.org/1998/Math/MathML" xmlns:xlink="http://www.w3.org/1999/xlink">
+    <article>
+        <article-meta>
+            <pub-date publication-format="hesitant" date-type="publication">
+                <day>22</day>
+                <month>10</month>
+                <year>2023</year>
+            </pub-date>
+        </article-meta>
+    </article>
+</root>
\ No newline at end of file
diff --git a/test/tests/gen/pub-date-tests/pub-date-test-3/pass.xml b/test/tests/gen/pub-date-tests/pub-date-test-3/pass.xml
new file mode 100644
index 0000000000..7304dc50e2
--- /dev/null
+++ b/test/tests/gen/pub-date-tests/pub-date-test-3/pass.xml
@@ -0,0 +1,15 @@
+<?oxygen SCHSchema="pub-date-test-3.sch"?>
+<!--Context: pub-date
+Test: report    @publication-format and @publication-format!='electronic'
+Message: pub-date has the attribute publication-format, but the value is "". The only permitted value is "electronic". -->
+<root xmlns:ali="http://www.niso.org/schemas/ali/1.0/" xmlns:mml="http://www.w3.org/1998/Math/MathML" xmlns:xlink="http://www.w3.org/1999/xlink">
+    <article>
+        <article-meta>
+            <pub-date publication-format="electronic" date-type="publication">
+                <day>22</day>
+                <month>10</month>
+                <year>2023</year>
+            </pub-date>
+        </article-meta>
+    </article>
+</root>
\ No newline at end of file
diff --git a/test/tests/gen/pub-date-tests/pub-date-test-3/pub-date-test-3.sch b/test/tests/gen/pub-date-tests/pub-date-test-3/pub-date-test-3.sch
new file mode 100644
index 0000000000..4897a3a1d4
--- /dev/null
+++ b/test/tests/gen/pub-date-tests/pub-date-test-3/pub-date-test-3.sch
@@ -0,0 +1,1303 @@
+<schema xmlns="http://purl.oclc.org/dsdl/schematron" xmlns:xlink="http://www.w3.org/1999/xlink" xmlns:xsl="http://www.w3.org/1999/XSL/Transform" xmlns:java="http://www.java.com/" xmlns:file="java.io.File" xmlns:ali="http://www.niso.org/schemas/ali/1.0/" xmlns:mml="http://www.w3.org/1998/Math/MathML" queryBinding="xslt2">
+  <title>eLife Schematron</title>
+  <ns uri="http://www.niso.org/schemas/ali/1.0/" prefix="ali"/>
+  <ns uri="http://www.w3.org/XML/1998/namespace" prefix="xml"/>
+  <ns uri="http://www.w3.org/1999/xlink" prefix="xlink"/>
+  <ns uri="http://www.w3.org/2001/XInclude" prefix="xi"/>
+  <ns uri="http://www.w3.org/1998/Math/MathML" prefix="mml"/>
+  <ns uri="http://saxon.sf.net/" prefix="saxon"/>
+  <ns uri="http://purl.org/dc/terms/" prefix="dc"/>
+  <ns uri="http://www.w3.org/2001/XMLSchema" prefix="xs"/>
+  <ns uri="https://elifesciences.org/namespace" prefix="e"/>
+  <ns uri="java.io.File" prefix="file"/>
+  <ns uri="http://www.java.com/" prefix="java"/>
+  <let name="features-subj" value="('Feature Article', 'Insight', 'Editorial')"/>
+  <let name="features-article-types" value="('article-commentary','editorial','discussion')"/>
+  <let name="research-subj" value="('Research Article', 'Short Report', 'Tools and Resources', 'Research Advance', 'Registered Report', 'Replication Study', 'Research Communication', 'Correction', 'Retraction', 'Scientific Correspondence', 'Review Article')"/>
+  <let name="notice-article-types" value="('correction','retraction','expression-of-concern')"/>
+  <let name="notice-display-types" value="('Correction','Retraction','Expression of Concern')"/>
+  <let name="allowed-article-types" value="('research-article','review-article',$features-article-types, $notice-article-types)"/>
+  <let name="allowed-disp-subj" value="($research-subj, $features-subj)"/>
+  <let name="MSAs" value="('Biochemistry and Chemical Biology', 'Cancer Biology', 'Cell Biology', 'Chromosomes and Gene Expression', 'Computational and Systems Biology', 'Developmental Biology', 'Ecology', 'Epidemiology and Global Health', 'Evolutionary Biology', 'Genetics and Genomics', 'Medicine', 'Immunology and Inflammation', 'Microbiology and Infectious Disease', 'Neuroscience', 'Physics of Living Systems', 'Plant Biology', 'Stem Cells and Regenerative Medicine', 'Structural Biology and Molecular Biophysics')"/>
+  <let name="funders" value="'../../../../../src/funders.xml'"/>
+  <let name="wellcome-fundref-ids" value="('http://dx.doi.org/10.13039/100010269','http://dx.doi.org/10.13039/100004440')"/>
+  <xsl:function name="e:is-prc" as="xs:boolean">
+    <xsl:param name="elem" as="node()"/>
+    <xsl:choose>
+      <xsl:when test="$elem/name()='article'">
+        <xsl:value-of select="e:is-prc-helper($elem)"/>
+      </xsl:when>
+      <xsl:otherwise>
+        <xsl:value-of select="e:is-prc-helper($elem/ancestor::article[1])"/>
+      </xsl:otherwise>
+    </xsl:choose>
+  </xsl:function>
+  <xsl:function name="e:is-prc-helper" as="xs:boolean">
+    <xsl:param name="article" as="node()"/>
+    <xsl:choose>
+      <xsl:when test="$article//article-meta/custom-meta-group/custom-meta[meta-name='publishing-route']/meta-value='prc'">
+        <xsl:value-of select="true()"/>
+      </xsl:when>
+      <xsl:otherwise>
+        <xsl:value-of select="false()"/>
+      </xsl:otherwise>
+    </xsl:choose>
+  </xsl:function>
+  <xsl:function name="e:get-version" as="xs:string">
+    <xsl:param name="elem" as="node()"/>
+    <xsl:choose>
+      <xsl:when test="$elem/name()='article'">
+        <xsl:value-of select="e:get-version-helper($elem)"/>
+      </xsl:when>
+      <xsl:otherwise>
+        <xsl:value-of select="e:get-version-helper($elem/ancestor::article[1])"/>
+      </xsl:otherwise>
+    </xsl:choose>
+  </xsl:function>
+  <xsl:function name="e:get-version-helper" as="xs:string">
+    <xsl:param name="article" as="node()"/>
+    <xsl:choose>
+      <xsl:when test="$article//article-meta/custom-meta-group/custom-meta[meta-name='schema-version']/meta-value">
+        <xsl:value-of select="$article//article-meta/custom-meta-group/custom-meta[meta-name='schema-version']/meta-value"/>
+      </xsl:when>
+      <xsl:otherwise>
+        <xsl:value-of select="'1'"/>
+      </xsl:otherwise>
+    </xsl:choose>
+  </xsl:function>
+  <xsl:function name="e:titleCaseToken" as="xs:string">
+    <xsl:param name="s" as="xs:string"/>
+    <xsl:choose>
+      <xsl:when test="contains($s,'-')">
+        <xsl:value-of select="concat(           upper-case(substring(substring-before($s,'-'), 1, 1)),           lower-case(substring(substring-before($s,'-'),2)),           '-',           upper-case(substring(substring-after($s,'-'), 1, 1)),           lower-case(substring(substring-after($s,'-'),2)))"/>
+      </xsl:when>
+      <xsl:when test="lower-case($s)='elife'">
+        <xsl:value-of select="'eLife'"/>
+      </xsl:when>
+      <xsl:when test="lower-case($s)=('and','or','the','an','of','in','as','at','by','for','a','to','up','but','yet')">
+        <xsl:value-of select="lower-case($s)"/>
+      </xsl:when>
+      <xsl:when test="matches(lower-case($s),'^rna$|^dna$|^mri$|^hiv$|^tor$|^aids$|^covid-19$|^covid$')">
+        <xsl:value-of select="upper-case($s)"/>
+      </xsl:when>
+      <xsl:when test="matches(lower-case($s),'[1-4]d')">
+        <xsl:value-of select="upper-case($s)"/>
+      </xsl:when>
+      <xsl:otherwise>
+        <xsl:value-of select="concat(upper-case(substring($s, 1, 1)), lower-case(substring($s, 2)))"/>
+      </xsl:otherwise>
+    </xsl:choose>
+  </xsl:function>
+  <xsl:function name="e:titleCase" as="xs:string">
+    <xsl:param name="s" as="xs:string"/>
+    <xsl:choose>
+      
+      <xsl:when test="lower-case($s)='protein kinase a'">
+        <xsl:value-of select="'Protein Kinase A'"/>
+      </xsl:when>
+      <xsl:when test="contains($s,' ')">
+        <xsl:variable name="token1" select="substring-before($s,' ')"/>
+        <xsl:variable name="token2" select="substring-after($s,$token1)"/>
+        <xsl:choose>
+          <xsl:when test="lower-case($token1)='elife'">
+            <xsl:value-of select="concat('eLife',               ' ',               string-join(for $x in tokenize(substring-after($token2,' '),'\p{Zs}') return e:titleCaseToken($x),' ')               )"/>
+          </xsl:when>
+          <xsl:when test="matches(lower-case($token1),'^rna$|^dna$|^mri$|^hiv$|^tor$|^aids$|^covid-19$|^covid$')">
+            <xsl:value-of select="concat(upper-case($token1),               ' ',               string-join(for $x in tokenize(substring-after($token2,' '),'\p{Zs}') return e:titleCaseToken($x),' ')               )"/>
+          </xsl:when>
+          <xsl:when test="matches(lower-case($token1),'[1-4]d')">
+            <xsl:value-of select="concat(upper-case($token1),               ' ',               string-join(for $x in tokenize(substring-after($token2,' '),'\p{Zs}') return e:titleCaseToken($x),' ')               )"/>
+          </xsl:when>
+          <xsl:when test="contains($token1,'-')">
+            <xsl:value-of select="string-join(for $x in tokenize($s,'\p{Zs}') return e:titleCaseToken($x),' ')"/>
+          </xsl:when>
+          <xsl:otherwise>
+            <xsl:value-of select="concat(               concat(upper-case(substring($token1, 1, 1)), lower-case(substring($token1, 2))),               ' ',               string-join(for $x in tokenize(substring-after($token2,' '),'\p{Zs}') return e:titleCaseToken($x),' ')               )"/>
+          </xsl:otherwise>
+        </xsl:choose>
+      </xsl:when>
+      <xsl:when test="lower-case($s)='elife'">
+        <xsl:value-of select="'eLife'"/>
+      </xsl:when>
+      <xsl:when test="lower-case($s)=('and','or','the','an','of')">
+        <xsl:value-of select="lower-case($s)"/>
+      </xsl:when>
+      <xsl:when test="matches(lower-case($s),'^rna$|^dna$|^mri$|^hiv$|^tor$|^aids$|^covid-19$|^covid$')">
+        <xsl:value-of select="upper-case($s)"/>
+      </xsl:when>
+      <xsl:when test="matches(lower-case($s),'[1-4]d')">
+        <xsl:value-of select="upper-case($s)"/>
+      </xsl:when>
+      <xsl:otherwise>
+        <xsl:value-of select="e:titleCaseToken($s)"/>
+      </xsl:otherwise>
+    </xsl:choose>
+  </xsl:function>
+  <xsl:function name="e:article-type2title" as="xs:string">
+    <xsl:param name="s" as="xs:string"/>
+    <xsl:choose>
+      <xsl:when test="$s = 'Replication Study'">
+        <xsl:value-of select="'Replication Study:'"/>
+      </xsl:when>
+      <xsl:when test="$s = 'Registered Report'">
+        <xsl:value-of select="'Registered report:'"/>
+      </xsl:when>
+      <xsl:when test="$s = 'Correction'">
+        <xsl:value-of select="'Correction:'"/>
+      </xsl:when>
+      <xsl:when test="$s = 'Retraction'">
+        <xsl:value-of select="'Retraction:'"/>
+      </xsl:when>
+      <xsl:when test="$s = 'Expression of Concern'">
+        <xsl:value-of select="'Expression of Concern:'"/>
+      </xsl:when>
+      <xsl:otherwise>
+        <xsl:value-of select="'undefined'"/>
+      </xsl:otherwise>
+    </xsl:choose>
+  </xsl:function>
+  <xsl:function name="e:sec-type2title" as="xs:string">
+    <xsl:param name="s" as="xs:string"/>
+    <xsl:choose>
+      <xsl:when test="$s = 'intro'">
+        <xsl:value-of select="'Introduction'"/>
+      </xsl:when>
+      <xsl:when test="$s = 'results'">
+        <xsl:value-of select="'Results'"/>
+      </xsl:when>
+      <xsl:when test="$s = 'discussion'">
+        <xsl:value-of select="'Discussion'"/>
+      </xsl:when>
+      <xsl:when test="$s = 'materials|methods'">
+        <xsl:value-of select="'Materials and methods'"/>
+      </xsl:when>
+      <xsl:when test="$s = 'results|discussion'">
+        <xsl:value-of select="'Results and discussion'"/>
+      </xsl:when>
+      <xsl:when test="$s = 'methods'">
+        <xsl:value-of select="'Methods'"/>
+      </xsl:when>
+      <xsl:when test="$s = 'model'">
+        <xsl:value-of select="'Model'"/>
+      </xsl:when>
+      <xsl:when test="$s = 'additional-information'">
+        <xsl:value-of select="'Additional information'"/>
+      </xsl:when>
+      <xsl:when test="$s = 'supplementary-material'">
+        <xsl:value-of select="'Additional files'"/>
+      </xsl:when>
+      <xsl:when test="$s = 'data-availability'">
+        <xsl:value-of select="'Data availability'"/>
+      </xsl:when>
+      <xsl:otherwise>
+        <xsl:value-of select="'undefined'"/>
+      </xsl:otherwise>
+    </xsl:choose>
+  </xsl:function>
+  <xsl:function name="e:fig-id-type" as="xs:string">
+    <xsl:param name="s" as="xs:string"/>
+    <xsl:choose>
+      <xsl:when test="matches($s,'^fig[0-9]{1,3}$')">
+        <xsl:value-of select="'Figure'"/>
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+      <xsl:when test="matches($s,'^fig[0-9]{1,3}s[0-9]{1,3}$')">
+        <xsl:value-of select="'Figure supplement'"/>
+      </xsl:when>
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+        <xsl:value-of select="'Box figure'"/>
+      </xsl:when>
+      <xsl:when test="matches($s,'^app[0-9]{1,3}fig[0-9]{1,3}$')">
+        <xsl:value-of select="'Appendix figure'"/>
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+        <xsl:value-of select="'Appendix figure supplement'"/>
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+        <xsl:value-of select="'Author response figure'"/>
+      </xsl:when>
+      <xsl:when test="matches($s,'^C[0-9]{1,3}$|^chem[0-9]{1,3}$')">
+        <xsl:value-of select="'Chemical structure'"/>
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+      <xsl:when test="matches($s,'^app[0-9]{1,3}C[0-9]{1,3}$|^app[0-9]{1,3}chem[0-9]{1,3}$')">
+        <xsl:value-of select="'Appendix chemical structure'"/>
+      </xsl:when>
+      <xsl:when test="matches($s,'^S[0-9]{1,3}$|^scheme[0-9]{1,3}$')">
+        <xsl:value-of select="'Scheme'"/>
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+      <xsl:when test="matches($s,'^app[0-9]{1,3}S[0-9]{1,3}$|^app[0-9]{1,3}scheme[0-9]{1,3}$')">
+        <xsl:value-of select="'Appendix scheme'"/>
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+      <xsl:otherwise>
+        <xsl:value-of select="'undefined'"/>
+      </xsl:otherwise>
+    </xsl:choose>
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+  <xsl:function name="e:stripDiacritics" as="xs:string">
+    <xsl:param name="string" as="xs:string"/>
+    <xsl:value-of select="replace(replace(replace(translate(normalize-unicode($string,'NFD'),'ƀȼđɇǥħɨıɉꝁłøɍŧɏƶ','bcdeghiijklortyz'),'[\p{M}’]',''),'æ','ae'),'ß','ss')"/>
+  </xsl:function>
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+    <xsl:param name="ref"/>
+    <xsl:choose>
+      <xsl:when test="$ref/element-citation[1]/person-group[1]/* and $ref/element-citation[1]/year">
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+      </xsl:when>
+      <xsl:when test="$ref/element-citation/person-group[1]/*">
+        <xsl:value-of select="concat(           replace(e:get-collab-or-surname($ref/element-citation[1]/person-group[1]/*[1]),'\p{Zs}',''),           ' 9999 ',           string-join(for $x in $ref/element-citation[1]/person-group[1]/*[position()=(2,3)]           return replace(e:get-collab-or-surname($x),'\p{Zs}',''),' ')           )"/>
+      </xsl:when>
+      <xsl:when test="$ref/element-citation/year">
+        <xsl:value-of select="concat(' ',$ref/element-citation[1]/year[1])"/>
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+      <xsl:otherwise>
+        <xsl:value-of select="'zzzzz 9999'"/>
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+  <xsl:function name="e:ref-list-string2" as="xs:string">
+    <xsl:param name="ref"/>
+    <xsl:choose>
+      <xsl:when test="$ref/element-citation[1]/year and count($ref/element-citation[1]/person-group[1]/*) = 2">
+        <xsl:value-of select="concat(           e:get-collab-or-surname($ref/element-citation[1]/person-group[1]/*[1]),           ' ',           e:get-collab-or-surname($ref/element-citation[1]/person-group[1]/*[2]),           ' ',           $ref/element-citation[1]/year[1])"/>
+      </xsl:when>
+      <xsl:when test="$ref/element-citation/person-group[1]/* and $ref/element-citation[1]/year">
+        <xsl:value-of select="concat(           e:get-collab-or-surname($ref/element-citation[1]/person-group[1]/*[1]),           ' ',           $ref/element-citation[1]/year[1])"/>
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+      <xsl:when test="$ref/element-citation/person-group[1]/*">
+        <xsl:value-of select="concat(           e:get-collab-or-surname($ref/element-citation[1]/person-group[1]/*[1]),           ' 9999 ')"/>
+      </xsl:when>
+      <xsl:when test="$ref/element-citation/year">
+        <xsl:value-of select="concat(' ',$ref/element-citation[1]/year[1])"/>
+      </xsl:when>
+      <xsl:otherwise>
+        <xsl:value-of select="'zzzzz 9999'"/>
+      </xsl:otherwise>
+    </xsl:choose>
+  </xsl:function>
+  <xsl:function name="e:get-collab-or-surname" as="xs:string?">
+    <xsl:param name="collab-or-name"/>
+    <xsl:choose>
+      <xsl:when test="$collab-or-name/name()='collab'">
+        <xsl:value-of select="e:stripDiacritics(replace(lower-case($collab-or-name),'\.',''))"/>
+      </xsl:when>
+      <xsl:when test="$collab-or-name/surname">
+        <xsl:value-of select="e:stripDiacritics(lower-case($collab-or-name/surname[1]))"/>
+      </xsl:when>
+      <xsl:otherwise/>
+    </xsl:choose>
+  </xsl:function>
+  <xsl:function name="e:cite-name-text" as="xs:string">
+    <xsl:param name="person-group"/>
+    <xsl:choose>
+      <xsl:when test="(count($person-group/*) = 1) and $person-group/name">
+        <xsl:value-of select="$person-group/name/surname[1]"/>
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+      <xsl:when test="(count($person-group/*) = 1) and $person-group/collab">
+        <xsl:value-of select="$person-group/collab"/>
+      </xsl:when>
+      <xsl:when test="(count($person-group/*) = 2) and (count($person-group/name) = 1) and $person-group/*[1]/local-name() = 'collab'">
+        <xsl:value-of select="concat($person-group/collab,' and ',$person-group/name/surname[1])"/>
+      </xsl:when>
+      <xsl:when test="(count($person-group/*) = 2) and (count($person-group/name) = 1) and $person-group/*[1]/local-name() = 'name'">
+        <xsl:value-of select="concat($person-group/name/surname[1],' and ',$person-group/collab)"/>
+      </xsl:when>
+      <xsl:when test="(count($person-group/*) = 2) and (count($person-group/name) = 2)">
+        <xsl:value-of select="concat($person-group/name[1]/surname[1],' and ',$person-group/name[2]/surname[1])"/>
+      </xsl:when>
+      <xsl:when test="(count($person-group/*) = 2) and (count($person-group/collab) = 2)">
+        <xsl:value-of select="concat($person-group/collab[1],' and ',$person-group/collab[2])"/>
+      </xsl:when>
+      <xsl:when test="(count($person-group/*) ge 2) and $person-group/*[1]/local-name() = 'collab'">
+        <xsl:value-of select="concat($person-group/collab[1], ' et al.')"/>
+      </xsl:when>
+      <xsl:when test="(count($person-group/*) ge 2) and $person-group/*[1]/local-name() = 'name'">
+        <xsl:value-of select="concat($person-group/name[1]/surname[1], ' et al.')"/>
+      </xsl:when>
+      <xsl:otherwise>
+        <xsl:value-of select="'undetermined'"/>
+      </xsl:otherwise>
+    </xsl:choose>
+  </xsl:function>
+  <xsl:function name="e:citation-format1" as="xs:string">
+    <xsl:param name="element-citation"/>
+    <xsl:choose>
+      <xsl:when test="$element-citation/person-group and $element-citation//year">
+        <xsl:value-of select="concat(e:cite-name-text($element-citation/person-group[1]),', ',$element-citation/descendant::year[1])"/>
+      </xsl:when>
+      <xsl:when test="$element-citation/person-group and not($element-citation//year)">
+        <xsl:value-of select="concat(e:cite-name-text($element-citation/person-group[1]),', ')"/>
+      </xsl:when>
+      <xsl:when test="not($element-citation/person-group) and $element-citation//year">
+        <xsl:value-of select="concat('et al., ',$element-citation/descendant::year[1])"/>
+      </xsl:when>
+      <xsl:otherwise>
+        <xsl:value-of select="', '"/>
+      </xsl:otherwise>
+    </xsl:choose>
+  </xsl:function>
+  <xsl:function name="e:citation-format2" as="xs:string">
+    <xsl:param name="element-citation"/>
+    <xsl:choose>
+      <xsl:when test="$element-citation/person-group and $element-citation//year">
+        <xsl:value-of select="concat(e:cite-name-text($element-citation/person-group[1]),' (',$element-citation/descendant::year[1],')')"/>
+      </xsl:when>
+      <xsl:when test="$element-citation/person-group and not($element-citation//year)">
+        <xsl:value-of select="concat(e:cite-name-text($element-citation/person-group[1]),' ()')"/>
+      </xsl:when>
+      <xsl:when test="not($element-citation/person-group) and $element-citation//year">
+        <xsl:value-of select="concat('et al. (',$element-citation/descendant::year[1],')')"/>
+      </xsl:when>
+      <xsl:otherwise>
+        <xsl:value-of select="', '"/>
+      </xsl:otherwise>
+    </xsl:choose>
+  </xsl:function>
+  <xsl:function name="e:ref-cite-list">
+    <xsl:param name="ref-list" as="node()"/>
+    <xsl:element name="list">
+      <xsl:for-each select="$ref-list/ref[element-citation[year]]">
+        <xsl:variable name="cite" select="e:citation-format1(./element-citation[1])"/>
+        <xsl:element name="item">
+          <xsl:attribute name="id">
+            <xsl:value-of select="./@id"/>
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+          <xsl:attribute name="no-suffix">
+            <xsl:value-of select="replace($cite,'[A-Za-z]$','')"/>
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+          <xsl:value-of select="$cite"/>
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+      </xsl:for-each>
+    </xsl:element>
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+  <xsl:function name="e:non-distinct-citations">
+    <xsl:param name="cite-list" as="node()"/>
+    <xsl:element name="list">
+    <xsl:for-each select="$cite-list//*:item">
+      <xsl:variable name="cite" select="./string()"/>
+      <xsl:choose>
+        <xsl:when test="./preceding::*:item/string() = $cite">
+          <xsl:element name="item">
+            <xsl:attribute name="id">
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+            <xsl:value-of select="$cite"/>
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+        </xsl:when>
+        <xsl:when test="not(matches($cite,'[A-Za-z]$')) and (./preceding::*:item/@no-suffix/string() = $cite)">
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+            <xsl:attribute name="id">
+              <xsl:value-of select="./@id"/>
+            </xsl:attribute>
+          <xsl:value-of select="$cite"/>
+          </xsl:element>
+        </xsl:when>
+        <xsl:when test="not(matches($cite,'[A-Za-z]$')) and ./following::*:item/@no-suffix/string() = $cite">
+          <xsl:element name="item">
+            <xsl:attribute name="id">
+              <xsl:value-of select="./@id"/>
+            </xsl:attribute>
+          <xsl:value-of select="$cite"/>
+          </xsl:element>
+        </xsl:when>
+        <xsl:otherwise/>
+      </xsl:choose>
+    </xsl:for-each>
+    </xsl:element>
+  </xsl:function>
+  <xsl:function name="e:get-name" as="xs:string">
+    <xsl:param name="name"/>
+    <xsl:choose>
+      <xsl:when test="$name/given-names[1] and $name/surname[1] and $name/suffix[1]">
+        <xsl:value-of select="concat($name/given-names[1],' ',$name/surname[1],' ',$name/suffix[1])"/>
+      </xsl:when>
+      <xsl:when test="not($name/given-names[1]) and $name/surname[1] and $name/suffix[1]">
+        <xsl:value-of select="concat($name/surname[1],' ',$name/suffix[1])"/>
+      </xsl:when>
+      <xsl:when test="$name/given-names[1] and $name/surname[1] and not($name/suffix[1])">
+        <xsl:value-of select="concat($name/given-names[1],' ',$name/surname[1])"/>
+      </xsl:when>
+      <xsl:when test="not($name/given-names[1]) and $name/surname[1] and not($name/suffix[1])">
+        <xsl:value-of select="$name/surname[1]"/>
+      </xsl:when>
+      <xsl:otherwise>
+        
+        <xsl:value-of select="'No elements present'"/>
+      </xsl:otherwise>
+    </xsl:choose>
+  </xsl:function>
+  <xsl:function name="e:get-collab">
+    <xsl:param name="collab"/>
+    <xsl:for-each select="$collab/(*|text())">
+      <xsl:choose>
+        <xsl:when test="./name()='contrib-group'"/>
+        <xsl:otherwise>
+          <xsl:value-of select="."/>
+        </xsl:otherwise>
+      </xsl:choose>
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+  <xsl:function name="e:isbn-sum" as="xs:integer">
+    <xsl:param name="s" as="xs:string"/>
+    <xsl:choose>
+      <xsl:when test="string-length($s) = 10">
+        <xsl:variable name="d1" select="number(substring($s,1,1)) * 10"/>
+        <xsl:variable name="d2" select="number(substring($s,2,1)) * 9"/>
+        <xsl:variable name="d3" select="number(substring($s,3,1)) * 8"/>
+        <xsl:variable name="d4" select="number(substring($s,4,1)) * 7"/>
+        <xsl:variable name="d5" select="number(substring($s,5,1)) * 6"/>
+        <xsl:variable name="d6" select="number(substring($s,6,1)) * 5"/>
+        <xsl:variable name="d7" select="number(substring($s,7,1)) * 4"/>
+        <xsl:variable name="d8" select="number(substring($s,8,1)) * 3"/>
+        <xsl:variable name="d9" select="number(substring($s,9,1)) * 2"/>
+        <xsl:variable name="d10" select="number(substring($s,10,1)) * 1"/>
+        <xsl:value-of select="number($d1 + $d2 + $d3 + $d4 + $d5 + $d6 + $d7 + $d8 + $d9 + $d10) mod 11"/>
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+      <xsl:when test="string-length($s) = 13">
+        <xsl:variable name="d1" select="number(substring($s,1,1))"/>
+        <xsl:variable name="d2" select="number(substring($s,2,1)) * 3"/>
+        <xsl:variable name="d3" select="number(substring($s,3,1))"/>
+        <xsl:variable name="d4" select="number(substring($s,4,1)) * 3"/>
+        <xsl:variable name="d5" select="number(substring($s,5,1))"/>
+        <xsl:variable name="d6" select="number(substring($s,6,1)) * 3"/>
+        <xsl:variable name="d7" select="number(substring($s,7,1))"/>
+        <xsl:variable name="d8" select="number(substring($s,8,1)) * 3"/>
+        <xsl:variable name="d9" select="number(substring($s,9,1))"/>
+        <xsl:variable name="d10" select="number(substring($s,10,1)) * 3"/>
+        <xsl:variable name="d11" select="number(substring($s,11,1))"/>
+        <xsl:variable name="d12" select="number(substring($s,12,1)) * 3"/>
+        <xsl:variable name="d13" select="number(substring($s,13,1))"/>
+        <xsl:value-of select="number($d1 + $d2 + $d3 + $d4 + $d5 + $d6 + $d7 + $d8 + $d9 + $d10 + $d11 + $d12 + $d13) mod 10"/>
+      </xsl:when>
+      <xsl:otherwise>
+        <xsl:value-of select="number('1')"/>
+      </xsl:otherwise>
+    </xsl:choose>
+  </xsl:function>
+  <xsl:function name="e:escape-for-regex" as="xs:string">
+    <xsl:param name="arg" as="xs:string?"/>
+    <xsl:sequence select="replace($arg,'(\.|\[|\]|\\|\||\-|\^|\$|\?|\*|\+|\{|\}|\(|\))','\\$1')"/>
+  </xsl:function>
+  <xsl:function name="e:get-ordinal" as="xs:string">
+    <xsl:param name="value" as="xs:integer?"/>
+    <xsl:if test="translate(string($value), '0123456789', '') = '' and number($value) &gt; 0">
+      <xsl:variable name="mod100" select="$value mod 100"/>
+      <xsl:variable name="mod10" select="$value mod 10"/>
+      <xsl:choose>
+        <xsl:when test="$mod100 = 11 or $mod100 = 12 or $mod100 = 13">
+          <xsl:value-of select="concat($value,'th')"/>
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+        <xsl:when test="$mod10 = 1">
+          <xsl:value-of select="concat($value,'st')"/>
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+        <xsl:when test="$mod10 = 2">
+          <xsl:value-of select="concat($value,'nd')"/>
+        </xsl:when>
+        <xsl:when test="$mod10 = 3">
+          <xsl:value-of select="concat($value,'rd')"/>
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+        <xsl:otherwise>
+          <xsl:value-of select="concat($value,'th')"/>
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+      </xsl:choose>
+    </xsl:if>
+  </xsl:function>
+  <let name="org-regex" value="'b\.\p{Zs}?subtilis|bacillus\p{Zs}?subtilis|d\.\p{Zs}?melanogaster|drosophila\p{Zs}?melanogaster|e\.\p{Zs}?coli|escherichia\p{Zs}?coli|s\.\p{Zs}?pombe|schizosaccharomyces\p{Zs}?pombe|s\.\p{Zs}?cerevisiae|saccharomyces\p{Zs}?cerevisiae|c\.\p{Zs}?elegans|caenorhabditis\p{Zs}?elegans|a\.\p{Zs}?thaliana|arabidopsis\p{Zs}?thaliana|m\.\p{Zs}?thermophila|myceliophthora\p{Zs}?thermophila|dictyostelium|p\.\p{Zs}?falciparum|plasmodium\p{Zs}?falciparum|s\.\p{Zs}?enterica|salmonella\p{Zs}?enterica|s\.\p{Zs}?pyogenes|streptococcus\p{Zs}?pyogenes|p\.\p{Zs}?dumerilii|platynereis\p{Zs}?dumerilii|p\.\p{Zs}?cynocephalus|papio\p{Zs}?cynocephalus|o\.\p{Zs}?fasciatus|oncopeltus\p{Zs}?fasciatus|n\.\p{Zs}?crassa|neurospora\p{Zs}?crassa|c\.\p{Zs}?intestinalis|ciona\p{Zs}?intestinalis|e\.\p{Zs}?cuniculi|encephalitozoon\p{Zs}?cuniculi|h\.\p{Zs}?salinarum|halobacterium\p{Zs}?salinarum|s\.\p{Zs}?solfataricus|sulfolobus\p{Zs}?solfataricus|s\.\p{Zs}?mediterranea|schmidtea\p{Zs}?mediterranea|s\.\p{Zs}?rosetta|salpingoeca\p{Zs}?rosetta|n\.\p{Zs}?vectensis|nematostella\p{Zs}?vectensis|s\.\p{Zs}?aureus|staphylococcus\p{Zs}?aureus|v\.\p{Zs}?cholerae|vibrio\p{Zs}?cholerae|t\.\p{Zs}?thermophila|tetrahymena\p{Zs}?thermophila|c\.\p{Zs}?reinhardtii|chlamydomonas\p{Zs}?reinhardtii|n\.\p{Zs}?attenuata|nicotiana\p{Zs}?attenuata|e\.\p{Zs}?carotovora|erwinia\p{Zs}?carotovora|e\.\p{Zs}?faecalis|h\.\p{Zs}?sapiens|homo\p{Zs}?sapiens|c\.\p{Zs}?trachomatis|chlamydia\p{Zs}?trachomatis|enterococcus\p{Zs}?faecalis|x\.\p{Zs}?laevis|xenopus\p{Zs}?laevis|x\.\p{Zs}?tropicalis|xenopus\p{Zs}?tropicalis|m\.\p{Zs}?musculus|mus\p{Zs}?musculus|d\.\p{Zs}?immigrans|drosophila\p{Zs}?immigrans|d\.\p{Zs}?subobscura|drosophila\p{Zs}?subobscura|d\.\p{Zs}?affinis|drosophila\p{Zs}?affinis|d\.\p{Zs}?obscura|drosophila\p{Zs}?obscura|f\.\p{Zs}?tularensis|francisella\p{Zs}?tularensis|p\.\p{Zs}?plantaginis|podosphaera\p{Zs}?plantaginis|p\.\p{Zs}?lanceolata|plantago\p{Zs}?lanceolata|m\.\p{Zs}?trossulus|mytilus\p{Zs}?trossulus|m\.\p{Zs}?edulis|mytilus\p{Zs}?edulis|m\.\p{Zs}?chilensis|mytilus\p{Zs}?chilensis|u\.\p{Zs}?maydis|ustilago\p{Zs}?maydis|p\.\p{Zs}?knowlesi|plasmodium\p{Zs}?knowlesi|p\.\p{Zs}?aeruginosa|pseudomonas\p{Zs}?aeruginosa|t\.\p{Zs}?brucei|trypanosoma\p{Zs}?brucei|t\.\p{Zs}?gondii|toxoplasma\p{Zs}?gondii|d\.\p{Zs}?rerio|danio\p{Zs}?rerio|yimenosaurus|lesothosaurus\p{Zs}?diagnosticus|l\.\p{Zs}?diagnosticus|scelidosaurus\p{Zs}?harrisonii|s\.\p{Zs}?harrisonii|haya\p{Zs}?griva|h\.\p{Zs}?griva|polacanthus\p{Zs}?foxii|p\.\p{Zs}?foxii|scutellosaurus\p{Zs}?lawleri|s\.\p{Zs}?lawleri|saichania\p{Zs}?chulsanensis|s\.\p{Zs}?chulsanensis|gargoyleosaurus\p{Zs}?parkpinorum|g\.\p{Zs}?parkpinorum|europelta\p{Zs}?carbonensis|e\.\p{Zs}?carbonensis|stegosaurus\p{Zs}?stenops|s\.\p{Zs}?stenops|pinacosaurus\p{Zs}?grangeri|p\.\p{Zs}?grangeri|tatisaurus\p{Zs}?oehleri|t\.\p{Zs}?oehleri|hungarosaurus\p{Zs}?tormai|h\.\p{Zs}?tormai|bienosaurus\p{Zs}?lufengensis|b\.\p{Zs}?lufengensis|fabrosaurus\p{Zs}?australis|f\.\p{Zs}?australis|chinshakiangosaurus\p{Zs}?chunghoensis|c\.\p{Zs}?chunghoensis|euoplocephalus\p{Zs}?tutus|e\.\p{Zs}?tutus|drosophila|xenopus|salmonella|g\.\p{Zs}?beringei|gorilla\p{Zs}?beringei|m\.\p{Zs}?assamensis|macaca\p{Zs}?assamensis|m\.\p{Zs}?fuscata|macaca\p{Zs}?fuscata|m\.\p{Zs}?mulatta|macaca\p{Zs}?mulatta|m\.\p{Zs}?nemestrina|macaca\p{Zs}?nemestrina|m\.\p{Zs}?sphinx|mandrillus\p{Zs}?sphinx|p\.\p{Zs}?anubis|papio\p{Zs}?anubis|p\.\p{Zs}?hamadryas|papio\p{Zs}?hamadryas|p\.\p{Zs}?paniscus|pan\p{Zs}?paniscus|p\.\p{Zs}?troglodytes|pan\p{Zs}?troglodytes'"/>
+  <let name="sec-title-regex" value="string-join(     for $x in tokenize($org-regex,'\|')     return concat('^',$x,'$')     ,'|')"/>
+  <xsl:function name="e:org-conform" as="xs:string">
+  <xsl:param name="s" as="xs:string"/>
+  <xsl:choose>
+    <xsl:when test="matches($s,'b\.\p{Zs}?subtilis')">
+      <xsl:value-of select="'B. subtilis'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'bacillus\p{Zs}?subtilis')">
+      <xsl:value-of select="'Bacillus subtilis'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'d\.\p{Zs}?melanogaster')">
+      <xsl:value-of select="'D. melanogaster'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'drosophila\p{Zs}?melanogaster')">
+      <xsl:value-of select="'Drosophila melanogaster'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'e\.\p{Zs}?coli')">
+      <xsl:value-of select="'E. coli'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'escherichia\p{Zs}?coli')">
+      <xsl:value-of select="'Escherichia coli'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'s\.\p{Zs}?pombe')">
+      <xsl:value-of select="'S. pombe'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'schizosaccharomyces\p{Zs}?pombe')">
+      <xsl:value-of select="'Schizosaccharomyces pombe'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'s\.\p{Zs}?cerevisiae')">
+      <xsl:value-of select="'S. cerevisiae'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'saccharomyces\p{Zs}?cerevisiae')">
+      <xsl:value-of select="'Saccharomyces cerevisiae'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'c\.\p{Zs}?elegans')">
+      <xsl:value-of select="'C. elegans'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'caenorhabditis\p{Zs}?elegans')">
+      <xsl:value-of select="'Caenorhabditis elegans'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'a\.\p{Zs}?thaliana')">
+      <xsl:value-of select="'A. thaliana'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'arabidopsis\p{Zs}?thaliana')">
+      <xsl:value-of select="'Arabidopsis thaliana'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'m\.\p{Zs}?thermophila')">
+      <xsl:value-of select="'M. thermophila'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'myceliophthora\p{Zs}?thermophila')">
+      <xsl:value-of select="'Myceliophthora thermophila'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'dictyostelium')">
+      <xsl:value-of select="'Dictyostelium'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'p\.\p{Zs}?falciparum')">
+      <xsl:value-of select="'P. falciparum'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'plasmodium\p{Zs}?falciparum')">
+      <xsl:value-of select="'Plasmodium falciparum'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'s\.\p{Zs}?enterica')">
+      <xsl:value-of select="'S. enterica'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'salmonella\p{Zs}?enterica')">
+      <xsl:value-of select="'Salmonella enterica'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'s\.\p{Zs}?pyogenes')">
+      <xsl:value-of select="'S. pyogenes'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'streptococcus\p{Zs}?pyogenes')">
+      <xsl:value-of select="'Streptococcus pyogenes'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'p\.\p{Zs}?dumerilii')">
+      <xsl:value-of select="'P. dumerilii'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'platynereis\p{Zs}?dumerilii')">
+      <xsl:value-of select="'Platynereis dumerilii'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'p\.\p{Zs}?cynocephalus')">
+      <xsl:value-of select="'P. cynocephalus'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'papio\p{Zs}?cynocephalus')">
+      <xsl:value-of select="'Papio cynocephalus'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'o\.\p{Zs}?fasciatus')">
+      <xsl:value-of select="'O. fasciatus'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'oncopeltus\p{Zs}?fasciatus')">
+      <xsl:value-of select="'Oncopeltus fasciatus'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'n\.\p{Zs}?crassa')">
+      <xsl:value-of select="'N. crassa'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'neurospora\p{Zs}?crassa')">
+      <xsl:value-of select="'Neurospora crassa'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'c\.\p{Zs}?intestinalis')">
+      <xsl:value-of select="'C. intestinalis'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'ciona\p{Zs}?intestinalis')">
+      <xsl:value-of select="'Ciona intestinalis'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'e\.\p{Zs}?cuniculi')">
+      <xsl:value-of select="'E. cuniculi'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'encephalitozoon\p{Zs}?cuniculi')">
+      <xsl:value-of select="'Encephalitozoon cuniculi'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'h\.\p{Zs}?salinarum')">
+      <xsl:value-of select="'H. salinarum'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'halobacterium\p{Zs}?salinarum')">
+      <xsl:value-of select="'Halobacterium salinarum'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'s\.\p{Zs}?solfataricus')">
+      <xsl:value-of select="'S. solfataricus'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'sulfolobus\p{Zs}?solfataricus')">
+      <xsl:value-of select="'Sulfolobus solfataricus'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'s\.\p{Zs}?mediterranea')">
+      <xsl:value-of select="'S. mediterranea'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'schmidtea\p{Zs}?mediterranea')">
+      <xsl:value-of select="'Schmidtea mediterranea'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'s\.\p{Zs}?rosetta')">
+      <xsl:value-of select="'S. rosetta'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'salpingoeca\p{Zs}?rosetta')">
+      <xsl:value-of select="'Salpingoeca rosetta'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'n\.\p{Zs}?vectensis')">
+      <xsl:value-of select="'N. vectensis'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'nematostella\p{Zs}?vectensis')">
+      <xsl:value-of select="'Nematostella vectensis'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'s\.\p{Zs}?aureus')">
+      <xsl:value-of select="'S. aureus'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'staphylococcus\p{Zs}?aureus')">
+      <xsl:value-of select="'Staphylococcus aureus'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'v\.\p{Zs}?cholerae')">
+      <xsl:value-of select="'V. cholerae'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'vibrio\p{Zs}?cholerae')">
+      <xsl:value-of select="'Vibrio cholerae'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'t\.\p{Zs}?thermophila')">
+      <xsl:value-of select="'T. thermophila'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'tetrahymena\p{Zs}?thermophila')">
+      <xsl:value-of select="'Tetrahymena thermophila'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'c\.\p{Zs}?reinhardtii')">
+      <xsl:value-of select="'C. reinhardtii'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'chlamydomonas\p{Zs}?reinhardtii')">
+      <xsl:value-of select="'Chlamydomonas reinhardtii'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'n\.\p{Zs}?attenuata')">
+      <xsl:value-of select="'N. attenuata'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'nicotiana\p{Zs}?attenuata')">
+      <xsl:value-of select="'Nicotiana attenuata'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'e\.\p{Zs}?carotovora')">
+      <xsl:value-of select="'E. carotovora'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'erwinia\p{Zs}?carotovora')">
+      <xsl:value-of select="'Erwinia carotovora'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'e\.\p{Zs}?faecalis')">
+      <xsl:value-of select="'E. faecalis'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'h\.\p{Zs}?sapiens')">
+      <xsl:value-of select="'H. sapiens'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'homo\p{Zs}?sapiens')">
+      <xsl:value-of select="'Homo sapiens'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'c\.\p{Zs}?trachomatis')">
+      <xsl:value-of select="'C. trachomatis'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'chlamydia\p{Zs}?trachomatis')">
+      <xsl:value-of select="'Chlamydia trachomatis'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'enterococcus\p{Zs}?faecalis')">
+      <xsl:value-of select="'Enterococcus faecalis'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'x\.\p{Zs}?laevis')">
+      <xsl:value-of select="'X. laevis'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'xenopus\p{Zs}?laevis')">
+      <xsl:value-of select="'Xenopus laevis'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'x\.\p{Zs}?tropicalis')">
+      <xsl:value-of select="'X. tropicalis'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'xenopus\p{Zs}?tropicalis')">
+      <xsl:value-of select="'Xenopus tropicalis'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'m\.\p{Zs}?musculus')">
+      <xsl:value-of select="'M. musculus'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'mus\p{Zs}?musculus')">
+      <xsl:value-of select="'Mus musculus'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'d\.\p{Zs}?immigrans')">
+      <xsl:value-of select="'D. immigrans'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'drosophila\p{Zs}?immigrans')">
+      <xsl:value-of select="'Drosophila immigrans'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'d\.\p{Zs}?subobscura')">
+      <xsl:value-of select="'D. subobscura'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'drosophila\p{Zs}?subobscura')">
+      <xsl:value-of select="'Drosophila subobscura'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'d\.\p{Zs}?affinis')">
+      <xsl:value-of select="'D. affinis'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'drosophila\p{Zs}?affinis')">
+      <xsl:value-of select="'Drosophila affinis'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'d\.\p{Zs}?obscura')">
+      <xsl:value-of select="'D. obscura'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'drosophila\p{Zs}?obscura')">
+      <xsl:value-of select="'Drosophila obscura'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'f\.\p{Zs}?tularensis')">
+      <xsl:value-of select="'F. tularensis'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'francisella\p{Zs}?tularensis')">
+      <xsl:value-of select="'Francisella tularensis'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'p\.\p{Zs}?plantaginis')">
+      <xsl:value-of select="'P. plantaginis'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'podosphaera\p{Zs}?plantaginis')">
+      <xsl:value-of select="'Podosphaera plantaginis'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'p\.\p{Zs}?lanceolata')">
+      <xsl:value-of select="'P. lanceolata'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'plantago\p{Zs}?lanceolata')">
+      <xsl:value-of select="'Plantago lanceolata'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'m\.\p{Zs}?trossulus')">
+      <xsl:value-of select="'M. trossulus'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'mytilus\p{Zs}?trossulus')">
+      <xsl:value-of select="'Mytilus trossulus'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'m\.\p{Zs}?edulis')">
+      <xsl:value-of select="'M. edulis'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'mytilus\p{Zs}?edulis')">
+      <xsl:value-of select="'Mytilus edulis'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'m\.\p{Zs}?chilensis')">
+      <xsl:value-of select="'M. chilensis'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'mytilus\p{Zs}?chilensis')">
+      <xsl:value-of select="'Mytilus chilensis'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'u\.\p{Zs}?maydis')">
+      <xsl:value-of select="'U. maydis'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'ustilago\p{Zs}?maydis')">
+      <xsl:value-of select="'Ustilago maydis'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'p\.\p{Zs}?knowlesi')">
+      <xsl:value-of select="'P. knowlesi'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'plasmodium\p{Zs}?knowlesi')">
+      <xsl:value-of select="'Plasmodium knowlesi'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'p\.\p{Zs}?aeruginosa')">
+      <xsl:value-of select="'P. aeruginosa'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'pseudomonas\p{Zs}?aeruginosa')">
+      <xsl:value-of select="'Pseudomonas aeruginosa'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'t\.\p{Zs}?brucei')">
+      <xsl:value-of select="'T. brucei'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'trypanosoma\p{Zs}?brucei')">
+      <xsl:value-of select="'Trypanosoma brucei'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'caulobacter\p{Zs}?crescentus')">
+      <xsl:value-of select="'Caulobacter crescentus'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'c\.\p{Zs}?crescentus')">
+      <xsl:value-of select="'C. crescentus'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'agrobacterium\p{Zs}?tumefaciens')">
+      <xsl:value-of select="'Agrobacterium tumefaciens'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'a\.\p{Zs}?tumefaciens')">
+      <xsl:value-of select="'A. tumefaciens'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'t\.\p{Zs}?gondii')">
+      <xsl:value-of select="'T. gondii'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'toxoplasma\p{Zs}?gondii')">
+      <xsl:value-of select="'Toxoplasma gondii'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'d\.\p{Zs}?rerio')">
+      <xsl:value-of select="'D. rerio'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'danio\p{Zs}?rerio')">
+      <xsl:value-of select="'Danio rerio'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'drosophila')">
+      <xsl:value-of select="'Drosophila'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'yimenosaurus')">
+      <xsl:value-of select="'Yimenosaurus'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'lesothosaurus\p{Zs}?diagnosticus')">
+      <xsl:value-of select="'Lesothosaurus diagnosticus'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'l.\p{Zs}?diagnosticus')">
+      <xsl:value-of select="'L. diagnosticus'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'scelidosaurus\p{Zs}?harrisonii')">
+      <xsl:value-of select="'Scelidosaurus harrisonii'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'s.\p{Zs}?harrisonii')">
+      <xsl:value-of select="'S. harrisonii'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'haya\p{Zs}?griva')">
+      <xsl:value-of select="'Haya griva'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'h.\p{Zs}?griva')">
+      <xsl:value-of select="'H. griva'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'polacanthus\p{Zs}?foxii')">
+      <xsl:value-of select="'Polacanthus foxii'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'p.\p{Zs}?foxii')">
+      <xsl:value-of select="'P. foxii'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'scutellosaurus\p{Zs}?lawleri')">
+      <xsl:value-of select="'Scutellosaurus lawleri'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'s.\p{Zs}?lawleri')">
+      <xsl:value-of select="'S. lawleri'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'saichania\p{Zs}?chulsanensis')">
+      <xsl:value-of select="'Saichania chulsanensis'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'s.\p{Zs}?chulsanensis')">
+      <xsl:value-of select="'S. chulsanensis'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'gargoyleosaurus\p{Zs}?parkpinorum')">
+      <xsl:value-of select="'Gargoyleosaurus parkpinorum'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'g.\p{Zs}?parkpinorum')">
+      <xsl:value-of select="'G. parkpinorum'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'europelta\p{Zs}?carbonensis')">
+      <xsl:value-of select="'Europelta carbonensis'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'e.\p{Zs}?carbonensis')">
+      <xsl:value-of select="'E. carbonensis'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'stegosaurus\p{Zs}?stenops')">
+      <xsl:value-of select="'Stegosaurus stenops'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'s.\p{Zs}?stenops')">
+      <xsl:value-of select="'S. stenops'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'pinacosaurus\p{Zs}?grangeri')">
+      <xsl:value-of select="'Pinacosaurus grangeri'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'p.\p{Zs}?grangeri')">
+      <xsl:value-of select="'P. grangeri'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'tatisaurus\p{Zs}?oehleri')">
+      <xsl:value-of select="'Tatisaurus oehleri'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'t.\p{Zs}?oehleri')">
+      <xsl:value-of select="'T. oehleri'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'hungarosaurus\p{Zs}?tormai')">
+      <xsl:value-of select="'Hungarosaurus tormai'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'h.\p{Zs}?tormai')">
+      <xsl:value-of select="'H. tormai'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'lesothosaurus\p{Zs}?diagnosticus')">
+      <xsl:value-of select="'Lesothosaurus diagnosticus'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'l.\p{Zs}?diagnosticus')">
+      <xsl:value-of select="'L. diagnosticus'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'bienosaurus\p{Zs}?lufengensis')">
+      <xsl:value-of select="'Bienosaurus lufengensis'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'b.\p{Zs}?lufengensis')">
+      <xsl:value-of select="'B. lufengensis'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'fabrosaurus\p{Zs}?australis')">
+      <xsl:value-of select="'Fabrosaurus australis'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'f.\p{Zs}?australis')">
+      <xsl:value-of select="'F. australis'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'chinshakiangosaurus\p{Zs}?chunghoensis')">
+      <xsl:value-of select="'Chinshakiangosaurus chunghoensis'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'c.\p{Zs}?chunghoensis')">
+      <xsl:value-of select="'C. chunghoensis'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'euoplocephalus\p{Zs}?tutus')">
+      <xsl:value-of select="'Euoplocephalus tutus'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'e.\p{Zs}?tutus')">
+      <xsl:value-of select="'E. tutus'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'g\.\p{Zs}?beringei')">
+      <xsl:value-of select="'G. beringei'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'gorilla\p{Zs}?beringei')">
+      <xsl:value-of select="'Gorilla beringei'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'m\.\p{Zs}?assamensis')">
+      <xsl:value-of select="'M. assamensis'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'macaca\p{Zs}?assamensis')">
+      <xsl:value-of select="'Macaca assamensis'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'m\.\p{Zs}?fuscata')">
+      <xsl:value-of select="'M. fuscata'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'macaca\p{Zs}?fuscata')">
+      <xsl:value-of select="'Macaca fuscata'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'m\.\p{Zs}?mulatta')">
+      <xsl:value-of select="'M. mulatta'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'macaca\p{Zs}?mulatta')">
+      <xsl:value-of select="'Macaca mulatta'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'m\.\p{Zs}?nemestrina')">
+      <xsl:value-of select="'M. nemestrina'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'macaca\p{Zs}?nemestrina')">
+      <xsl:value-of select="'Macaca nemestrina'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'m\.\p{Zs}?sphinx')">
+      <xsl:value-of select="'M. sphinx'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'mandrillus\p{Zs}?sphinx')">
+      <xsl:value-of select="'Mandrillus sphinx'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'p\.\p{Zs}?anubis')">
+      <xsl:value-of select="'P. anubis'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'papio\p{Zs}?anubis')">
+      <xsl:value-of select="'Papio anubis'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'p\.\p{Zs}?hamadryas')">
+      <xsl:value-of select="'P. hamadryas'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'papio\p{Zs}?hamadryas')">
+      <xsl:value-of select="'Papio hamadryas'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'p\.\p{Zs}?paniscus')">
+      <xsl:value-of select="'P. paniscus'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'pan\p{Zs}?paniscus')">
+      <xsl:value-of select="'Pan paniscus'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'p\.\p{Zs}?troglodytes')">
+      <xsl:value-of select="'P. troglodytes'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'pan\p{Zs}?troglodytes')">
+      <xsl:value-of select="'Pan troglodytes'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'xenopus')">
+      <xsl:value-of select="'Xenopus'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'salmonella')">
+      <xsl:value-of select="'Salmonella'"/>
+    </xsl:when>
+    <xsl:otherwise>
+      <xsl:value-of select="'undefined'"/>
+    </xsl:otherwise>
+  </xsl:choose>
+</xsl:function>
+  <xsl:function name="e:code-check">
+    <xsl:param name="s" as="xs:string"/>
+    <xsl:element name="code">
+      <xsl:if test="contains($s,'github')">
+        <xsl:element name="match">
+        <xsl:value-of select="'github '"/>
+        </xsl:element>
+      </xsl:if>
+      <xsl:if test="contains($s,'gitlab')">
+        <xsl:element name="match">
+        <xsl:value-of select="'gitlab '"/>
+        </xsl:element>
+      </xsl:if>
+      <xsl:if test="contains($s,'git.exeter.ac.uk')">
+        <xsl:element name="match">
+          <xsl:value-of select="'git.exeter.ac.uk '"/>
+        </xsl:element>
+      </xsl:if>
+      <xsl:if test="contains($s,'codeplex')">
+        <xsl:element name="match">
+        <xsl:value-of select="'codeplex '"/>
+        </xsl:element>
+      </xsl:if>
+      <xsl:if test="contains($s,'sourceforge')">
+        <xsl:element name="match">
+        <xsl:value-of select="'sourceforge '"/>
+        </xsl:element>
+      </xsl:if>
+      <xsl:if test="contains($s,'bitbucket')">
+        <xsl:element name="match">
+        <xsl:value-of select="'bitbucket '"/>
+        </xsl:element>
+      </xsl:if>
+      <xsl:if test="contains($s,'assembla ')">
+        <xsl:element name="match">
+        <xsl:value-of select="'assembla '"/>
+        </xsl:element>
+      </xsl:if>
+    </xsl:element>
+  </xsl:function>
+  <xsl:function name="e:get-xrefs">
+    <xsl:param name="article"/>
+    <xsl:param name="object-id"/>
+    <xsl:param name="object-type"/>
+    <xsl:variable name="object-no" select="replace($object-id,'[^0-9]','')"/>
+    <xsl:element name="matches">
+      <xsl:for-each select="$article//xref[(@ref-type=$object-type) and not(ancestor::caption)]">
+        <xsl:variable name="rid-no" select="replace(./@rid,'[^0-9]','')"/>
+        <xsl:variable name="text-no" select="tokenize(normalize-space(replace(.,'[^0-9]',' ')),'\p{Zs}')[last()]"/>
+        <xsl:choose>
+          <xsl:when test="./@rid = $object-id">
+            <xsl:element name="match">
+              <xsl:attribute name="sec-id">
+                <xsl:value-of select="./ancestor::sec[1]/@id"/>
+              </xsl:attribute>
+              <xsl:value-of select="self::*"/>
+            </xsl:element>
+          </xsl:when>
+          <xsl:when test="contains(./@rid,'app')"/>
+          <xsl:when test="($rid-no lt $object-no) and (./following-sibling::text()[1] = '–') and (./following-sibling::*[1]/name()='xref') and (number(replace(replace(./following-sibling::xref[1]/@rid,'\-','.'),'[a-z]','')) gt number($object-no))">
+            <xsl:element name="match">
+              <xsl:attribute name="sec-id">
+                <xsl:value-of select="./ancestor::sec[1]/@id"/>
+              </xsl:attribute>
+              <xsl:value-of select="self::*"/>
+            </xsl:element>
+          </xsl:when>
+          <xsl:when test="($rid-no lt $object-no) and contains(.,$object-no) and (contains(.,'Videos') or contains(.,'videos') and contains(.,'–'))">
+            <xsl:element name="match">
+              <xsl:attribute name="sec-id">
+                <xsl:value-of select="./ancestor::sec[1]/@id"/>
+              </xsl:attribute>
+              <xsl:value-of select="self::*"/>
+            </xsl:element>
+          </xsl:when>
+          <xsl:when test="($rid-no lt $object-no) and (contains(.,'Videos') or contains(.,'videos') and contains(.,'—')) and ($text-no gt $object-no)">
+            <xsl:element name="match">
+              <xsl:attribute name="sec-id">
+                <xsl:value-of select="./ancestor::sec[1]/@id"/>
+              </xsl:attribute>
+              <xsl:value-of select="self::*"/>
+            </xsl:element>
+          </xsl:when>
+          <xsl:otherwise/>
+        </xsl:choose>
+      </xsl:for-each>
+    </xsl:element>
+  </xsl:function>
+  <xsl:function name="e:get-iso-pub-date">
+    <xsl:param name="element"/>
+    <xsl:choose>
+      <xsl:when test="$element/ancestor-or-self::article//article-meta/pub-date[(@date-type='publication') or (@date-type='pub')]/month">
+        <xsl:variable name="pub-date" select="$element/ancestor-or-self::article//article-meta/pub-date[(@date-type='publication') or (@date-type='pub')]"/>
+        <xsl:value-of select="concat($pub-date/year,'-',$pub-date/month,'-',$pub-date/day)"/>
+      </xsl:when>
+      <xsl:otherwise/>
+    </xsl:choose>
+  </xsl:function>
+  <xsl:function name="e:get-copyright-holder">
+    <xsl:param name="contrib-group"/>
+    <xsl:variable name="author-count" select="count($contrib-group/contrib[@contrib-type='author'])"/>
+    <xsl:choose>
+      <xsl:when test="$author-count lt 1"/>
+      <xsl:when test="$author-count = 1">
+        <xsl:choose>
+          <xsl:when test="$contrib-group/contrib[@contrib-type='author']/collab">
+            <xsl:value-of select="$contrib-group/contrib[@contrib-type='author']/collab[1]/text()[1]"/>
+          </xsl:when>
+          <xsl:otherwise>
+            <xsl:value-of select="$contrib-group/contrib[@contrib-type='author']/name[1]/surname[1]"/>
+          </xsl:otherwise>
+        </xsl:choose>
+      </xsl:when>
+      <xsl:when test="$author-count = 2">
+        <xsl:choose>
+          <xsl:when test="$contrib-group/contrib[@contrib-type='author']/collab">
+            <xsl:choose>
+              <xsl:when test="$contrib-group/contrib[@contrib-type='author'][1]/collab and $contrib-group/contrib[@contrib-type='author'][2]/collab">
+                <xsl:value-of select="concat($contrib-group/contrib[@contrib-type='author']/collab[1]/text()[1],' and ',$contrib-group/contrib[@contrib-type='author']/collab[2]/text()[1])"/>
+              </xsl:when>
+              <xsl:when test="$contrib-group/contrib[@contrib-type='author'][1]/collab">
+                <xsl:value-of select="concat($contrib-group/contrib[@contrib-type='author'][1]/collab[1]/text()[1],' and ',$contrib-group/contrib[@contrib-type='author'][2]/name[1]/surname[1])"/>
+              </xsl:when>
+              <xsl:otherwise>
+                <xsl:value-of select="concat($contrib-group/contrib[@contrib-type='author'][1]/name[1]/surname[1],' and ',$contrib-group/contrib[@contrib-type='author'][2]/collab[1]/text()[1])"/>
+              </xsl:otherwise>
+            </xsl:choose>
+          </xsl:when>
+          <xsl:otherwise>
+            <xsl:value-of select="concat($contrib-group/contrib[@contrib-type='author'][1]/name[1]/surname[1],' and ',$contrib-group/contrib[@contrib-type='author'][2]/name[1]/surname[1])"/>
+          </xsl:otherwise>
+        </xsl:choose>
+      </xsl:when>
+      
+      <xsl:otherwise>
+        <xsl:variable name="is-equal-contrib" select="if ($contrib-group/contrib[@contrib-type='author'][1]/@equal-contrib='yes') then true() else false()"/>
+        <xsl:choose>
+          <xsl:when test="$is-equal-contrib">
+            
+            <xsl:variable name="equal-contrib-rid" select="$contrib-group/contrib[@contrib-type='author'][1]/xref[starts-with(@rid,'equal-contrib')]/@rid"/>
+            <xsl:variable name="first-authors" select="$contrib-group/contrib[@contrib-type='author' and @equal-contrib='yes' and xref[@rid=$equal-contrib-rid] and not(preceding-sibling::contrib[not(xref[@rid=$equal-contrib-rid])])]"/>
+            <xsl:choose>
+              
+              <xsl:when test="$author-count = 3 and count($first-authors) = 3">
+                <xsl:value-of select="concat(e:get-surname($contrib-group/contrib[@contrib-type='author'][1]),                   ', ',                   e:get-surname($contrib-group/contrib[@contrib-type='author'][2]),                   ' and ',                   e:get-surname($contrib-group/contrib[@contrib-type='author'][3]))"/>
+              </xsl:when>
+              
+              <xsl:when test="count($first-authors) gt 3">
+                <xsl:variable name="first-auth-string" select="string-join(for $auth in $contrib-group/contrib[@contrib-type='author'][position() lt 4] return e:get-surname($auth),', ')"/>
+                <xsl:value-of select="concat($first-auth-string,' et al')"/>
+              </xsl:when>
+              
+              <xsl:otherwise>
+                <xsl:variable name="first-auth-string" select="string-join(for $auth in $first-authors return e:get-surname($auth),', ')"/>
+                <xsl:value-of select="concat($first-auth-string,' et al')"/>
+              </xsl:otherwise>
+            </xsl:choose>
+          </xsl:when>
+          
+          <xsl:otherwise>
+            <xsl:value-of select="concat(e:get-surname($contrib-group/contrib[@contrib-type='author'][1]),' et al')"/>
+          </xsl:otherwise>
+        </xsl:choose>
+      </xsl:otherwise>
+    </xsl:choose>
+  </xsl:function>
+  <xsl:function name="e:get-surname" as="text()">
+    <xsl:param name="contrib"/>
+    <xsl:choose>
+      <xsl:when test="$contrib/collab">
+        <xsl:value-of select="$contrib/collab[1]/text()[1]"/>
+      </xsl:when>
+      <xsl:otherwise>
+        <xsl:value-of select="$contrib//name[1]/surname[1]"/>
+      </xsl:otherwise>
+    </xsl:choose>
+  </xsl:function>
+  <xsl:function name="e:insight-box" as="element()">
+    <xsl:param name="box" as="xs:string"/>
+    <xsl:param name="cite-text" as="xs:string"/>
+    <xsl:variable name="box-text" select="substring-after(substring-after($box,'article'),' ')"/> 
+    
+    <xsl:element name="list">
+      <xsl:for-each select="tokenize($cite-text,'\p{Zs}')">
+        <xsl:choose>
+          <xsl:when test="contains($box-text,.)"/>
+          <xsl:otherwise>
+            <xsl:element name="item">
+              <xsl:attribute name="type">cite</xsl:attribute>
+              <xsl:value-of select="."/>
+            </xsl:element>
+          </xsl:otherwise>
+        </xsl:choose>
+      </xsl:for-each>
+      <xsl:for-each select="tokenize($box-text,'\p{Zs}')">
+        <xsl:choose>
+          <xsl:when test="contains($cite-text,.)"/>
+          <xsl:otherwise>
+            <xsl:element name="item">
+              <xsl:attribute name="type">box</xsl:attribute>
+              <xsl:value-of select="."/>
+            </xsl:element>
+          </xsl:otherwise>
+        </xsl:choose>
+      </xsl:for-each>
+    </xsl:element>
+  </xsl:function>
+  <let name="latin-regex" value="'in\p{Zs}+vitro|ex\p{Zs}+vitro|in\p{Zs}+vivo|ex\p{Zs}+vivo|a\p{Zs}+priori|a\p{Zs}+posteriori|de\p{Zs}+novo|in\p{Zs}+utero|in\p{Zs}+natura|in\p{Zs}+situ|in\p{Zs}+planta|in\p{Zs}+cellulo|rete\p{Zs}+mirabile|nomen\p{Zs}+novum| sensu |ad\p{Zs}+libitum|in\p{Zs}+ovo'"/>
+  <xsl:function name="e:get-latin-terms" as="element()">
+    <xsl:param name="article" as="element()"/>
+    <xsl:param name="regex" as="xs:string"/>
+    
+    <xsl:variable name="roman-text" select="lower-case(       string-join(for $x in $article/*[local-name() = 'body' or local-name() = 'back']//*       return       if ($x/ancestor-or-self::sec[@sec-type='additional-information']) then ()       else if ($x/ancestor-or-self::ref-list) then ()       else if ($x/local-name() = 'italic') then ()       else $x/text(),' '))"/>
+    <xsl:variable name="italic-text" select="lower-case(string-join($article//*:italic[not(ancestor::ref-list) and not(ancestor::sec[@sec-type='additional-information'])],' '))"/>
+    
+    
+    <xsl:element name="result">
+      <xsl:choose>
+        <xsl:when test="matches($roman-text,$regex)">
+          <xsl:element name="list">
+            <xsl:attribute name="list-type">roman</xsl:attribute>
+            <xsl:for-each select="tokenize($regex,'\|')">
+              <xsl:variable name="display" select="replace(replace(.,'\\p\{Zs\}\+',' '),'^ | $','')"/>
+              <xsl:element name="match">
+                <xsl:attribute name="count">
+                  <xsl:value-of select="count(tokenize($roman-text,.)) - 1"/>
+                </xsl:attribute>
+                <xsl:value-of select="$display"/>
+              </xsl:element>
+            </xsl:for-each>
+          </xsl:element>
+        </xsl:when>
+        <xsl:otherwise>
+          <xsl:element name="list">
+            <xsl:attribute name="list-type">roman</xsl:attribute>
+          </xsl:element>
+        </xsl:otherwise>
+      </xsl:choose>
+      <xsl:choose>
+        <xsl:when test="matches($italic-text,$regex)">
+          <xsl:element name="list">
+            <xsl:attribute name="list-type">italic</xsl:attribute>
+            <xsl:for-each select="tokenize($regex,'\|')">
+              <xsl:variable name="display" select="replace(.,'\\p\{Zs\}\+',' ')"/>
+              <xsl:element name="match">
+                <xsl:attribute name="count">
+                  <xsl:value-of select="count(tokenize($italic-text,.)) - 1"/>
+                </xsl:attribute>
+                <xsl:value-of select="$display"/>
+              </xsl:element>
+            </xsl:for-each>
+          </xsl:element>
+        </xsl:when>
+        <xsl:otherwise>
+          <xsl:element name="list">
+            <xsl:attribute name="list-type">italic</xsl:attribute>
+          </xsl:element>
+        </xsl:otherwise>
+      </xsl:choose>
+    </xsl:element>
+  </xsl:function>
+  <xsl:function name="e:print-latin-terms" as="xs:string">
+    <xsl:param name="list" as="element()"/>
+    <xsl:value-of select="string-join(       for $term in $list//*:match[@count != '0']        return if (number($term/@count) gt 1) then concat($term/@count,' instances of ',$term)       else concat($term/@count,' instance of ',$term)       ,', ')"/>
+  </xsl:function>
+  <xsl:function name="e:list-panels">
+    <xsl:param name="caption" as="xs:string"/>
+    <xsl:element name="list">
+      <xsl:for-each select="tokenize($caption,'\.\p{Zs}+')">
+        <xsl:if test="matches(.,'^[B-K]\p{P}?[A-K]?\.?\p{Zs}+')">
+          <xsl:element name="item">
+            <xsl:attribute name="token">
+              <xsl:value-of select="substring-before(.,' ')"/>
+            </xsl:attribute>
+            <xsl:value-of select="."/>
+          </xsl:element>
+        </xsl:if>
+      </xsl:for-each>
+    </xsl:element>
+  </xsl:function>
+  <xsl:function name="e:get-weekday" as="xs:integer?">
+    <xsl:param name="date" as="xs:anyAtomicType?"/>
+    <xsl:sequence select="       if (empty($date)) then ()       else xs:integer((xs:date($date) - xs:date('1901-01-06')) div xs:dayTimeDuration('P1D')) mod 7       "/>
+  </xsl:function>
+  <xsl:function name="e:line-count" as="xs:integer">
+    <xsl:param name="arg" as="xs:string?"/>
+    
+    <xsl:sequence select="count(tokenize($arg,'(\r\n?|\n\r?)'))"/>
+    
+  </xsl:function>
+  <pattern id="article-metadata">
+    <rule context="pub-date" id="pub-date-tests">
+      <let name="allowed-attributes" value="('publication-format','date-type','iso-8601-date')"/>
+      <report test="@publication-format and @publication-format!='electronic'" role="error" id="pub-date-test-3">pub-date has the attribute publication-format, but the value is "<value-of select="@publication-format"/>". The only permitted value is "electronic".</report>
+    </rule>
+  </pattern>
+  <pattern id="root-pattern">
+    <rule context="root" id="root-rule">
+      <assert test="descendant::pub-date" role="error" id="pub-date-tests-xspec-assert">pub-date must be present.</assert>
+    </rule>
+  </pattern>
+</schema>
\ No newline at end of file
diff --git a/test/tests/gen/pub-date-tests/pub-date-test-4/fail.xml b/test/tests/gen/pub-date-tests/pub-date-test-4/fail.xml
new file mode 100644
index 0000000000..7532dec20f
--- /dev/null
+++ b/test/tests/gen/pub-date-tests/pub-date-test-4/fail.xml
@@ -0,0 +1,15 @@
+<?oxygen SCHSchema="pub-date-test-4.sch"?>
+<!--Context: pub-date
+Test: report    @date-type and @date-type!='publication'
+Message: pub-date has the attribute date-type, but the value is "". The only permitted value is "publication". -->
+<root xmlns:ali="http://www.niso.org/schemas/ali/1.0/" xmlns:mml="http://www.w3.org/1998/Math/MathML" xmlns:xlink="http://www.w3.org/1999/xlink">
+    <article>
+        <article-meta>
+            <pub-date publication-format="electronic" date-type="frisky">
+                <day>22</day>
+                <month>10</month>
+                <year>2023</year>
+            </pub-date>
+        </article-meta>
+    </article>
+</root>
\ No newline at end of file
diff --git a/test/tests/gen/pub-date-tests/pub-date-test-4/pass.xml b/test/tests/gen/pub-date-tests/pub-date-test-4/pass.xml
new file mode 100644
index 0000000000..11df0274c4
--- /dev/null
+++ b/test/tests/gen/pub-date-tests/pub-date-test-4/pass.xml
@@ -0,0 +1,15 @@
+<?oxygen SCHSchema="pub-date-test-4.sch"?>
+<!--Context: pub-date
+Test: report    @date-type and @date-type!='publication'
+Message: pub-date has the attribute date-type, but the value is "". The only permitted value is "publication". -->
+<root xmlns:ali="http://www.niso.org/schemas/ali/1.0/" xmlns:mml="http://www.w3.org/1998/Math/MathML" xmlns:xlink="http://www.w3.org/1999/xlink">
+    <article>
+        <article-meta>
+            <pub-date publication-format="electronic" date-type="publication">
+                <day>22</day>
+                <month>10</month>
+                <year>2023</year>
+            </pub-date>
+        </article-meta>
+    </article>
+</root>
\ No newline at end of file
diff --git a/test/tests/gen/pub-date-tests/pub-date-test-4/pub-date-test-4.sch b/test/tests/gen/pub-date-tests/pub-date-test-4/pub-date-test-4.sch
new file mode 100644
index 0000000000..cf105aad02
--- /dev/null
+++ b/test/tests/gen/pub-date-tests/pub-date-test-4/pub-date-test-4.sch
@@ -0,0 +1,1303 @@
+<schema xmlns="http://purl.oclc.org/dsdl/schematron" xmlns:xlink="http://www.w3.org/1999/xlink" xmlns:xsl="http://www.w3.org/1999/XSL/Transform" xmlns:java="http://www.java.com/" xmlns:file="java.io.File" xmlns:ali="http://www.niso.org/schemas/ali/1.0/" xmlns:mml="http://www.w3.org/1998/Math/MathML" queryBinding="xslt2">
+  <title>eLife Schematron</title>
+  <ns uri="http://www.niso.org/schemas/ali/1.0/" prefix="ali"/>
+  <ns uri="http://www.w3.org/XML/1998/namespace" prefix="xml"/>
+  <ns uri="http://www.w3.org/1999/xlink" prefix="xlink"/>
+  <ns uri="http://www.w3.org/2001/XInclude" prefix="xi"/>
+  <ns uri="http://www.w3.org/1998/Math/MathML" prefix="mml"/>
+  <ns uri="http://saxon.sf.net/" prefix="saxon"/>
+  <ns uri="http://purl.org/dc/terms/" prefix="dc"/>
+  <ns uri="http://www.w3.org/2001/XMLSchema" prefix="xs"/>
+  <ns uri="https://elifesciences.org/namespace" prefix="e"/>
+  <ns uri="java.io.File" prefix="file"/>
+  <ns uri="http://www.java.com/" prefix="java"/>
+  <let name="features-subj" value="('Feature Article', 'Insight', 'Editorial')"/>
+  <let name="features-article-types" value="('article-commentary','editorial','discussion')"/>
+  <let name="research-subj" value="('Research Article', 'Short Report', 'Tools and Resources', 'Research Advance', 'Registered Report', 'Replication Study', 'Research Communication', 'Correction', 'Retraction', 'Scientific Correspondence', 'Review Article')"/>
+  <let name="notice-article-types" value="('correction','retraction','expression-of-concern')"/>
+  <let name="notice-display-types" value="('Correction','Retraction','Expression of Concern')"/>
+  <let name="allowed-article-types" value="('research-article','review-article',$features-article-types, $notice-article-types)"/>
+  <let name="allowed-disp-subj" value="($research-subj, $features-subj)"/>
+  <let name="MSAs" value="('Biochemistry and Chemical Biology', 'Cancer Biology', 'Cell Biology', 'Chromosomes and Gene Expression', 'Computational and Systems Biology', 'Developmental Biology', 'Ecology', 'Epidemiology and Global Health', 'Evolutionary Biology', 'Genetics and Genomics', 'Medicine', 'Immunology and Inflammation', 'Microbiology and Infectious Disease', 'Neuroscience', 'Physics of Living Systems', 'Plant Biology', 'Stem Cells and Regenerative Medicine', 'Structural Biology and Molecular Biophysics')"/>
+  <let name="funders" value="'../../../../../src/funders.xml'"/>
+  <let name="wellcome-fundref-ids" value="('http://dx.doi.org/10.13039/100010269','http://dx.doi.org/10.13039/100004440')"/>
+  <xsl:function name="e:is-prc" as="xs:boolean">
+    <xsl:param name="elem" as="node()"/>
+    <xsl:choose>
+      <xsl:when test="$elem/name()='article'">
+        <xsl:value-of select="e:is-prc-helper($elem)"/>
+      </xsl:when>
+      <xsl:otherwise>
+        <xsl:value-of select="e:is-prc-helper($elem/ancestor::article[1])"/>
+      </xsl:otherwise>
+    </xsl:choose>
+  </xsl:function>
+  <xsl:function name="e:is-prc-helper" as="xs:boolean">
+    <xsl:param name="article" as="node()"/>
+    <xsl:choose>
+      <xsl:when test="$article//article-meta/custom-meta-group/custom-meta[meta-name='publishing-route']/meta-value='prc'">
+        <xsl:value-of select="true()"/>
+      </xsl:when>
+      <xsl:otherwise>
+        <xsl:value-of select="false()"/>
+      </xsl:otherwise>
+    </xsl:choose>
+  </xsl:function>
+  <xsl:function name="e:get-version" as="xs:string">
+    <xsl:param name="elem" as="node()"/>
+    <xsl:choose>
+      <xsl:when test="$elem/name()='article'">
+        <xsl:value-of select="e:get-version-helper($elem)"/>
+      </xsl:when>
+      <xsl:otherwise>
+        <xsl:value-of select="e:get-version-helper($elem/ancestor::article[1])"/>
+      </xsl:otherwise>
+    </xsl:choose>
+  </xsl:function>
+  <xsl:function name="e:get-version-helper" as="xs:string">
+    <xsl:param name="article" as="node()"/>
+    <xsl:choose>
+      <xsl:when test="$article//article-meta/custom-meta-group/custom-meta[meta-name='schema-version']/meta-value">
+        <xsl:value-of select="$article//article-meta/custom-meta-group/custom-meta[meta-name='schema-version']/meta-value"/>
+      </xsl:when>
+      <xsl:otherwise>
+        <xsl:value-of select="'1'"/>
+      </xsl:otherwise>
+    </xsl:choose>
+  </xsl:function>
+  <xsl:function name="e:titleCaseToken" as="xs:string">
+    <xsl:param name="s" as="xs:string"/>
+    <xsl:choose>
+      <xsl:when test="contains($s,'-')">
+        <xsl:value-of select="concat(           upper-case(substring(substring-before($s,'-'), 1, 1)),           lower-case(substring(substring-before($s,'-'),2)),           '-',           upper-case(substring(substring-after($s,'-'), 1, 1)),           lower-case(substring(substring-after($s,'-'),2)))"/>
+      </xsl:when>
+      <xsl:when test="lower-case($s)='elife'">
+        <xsl:value-of select="'eLife'"/>
+      </xsl:when>
+      <xsl:when test="lower-case($s)=('and','or','the','an','of','in','as','at','by','for','a','to','up','but','yet')">
+        <xsl:value-of select="lower-case($s)"/>
+      </xsl:when>
+      <xsl:when test="matches(lower-case($s),'^rna$|^dna$|^mri$|^hiv$|^tor$|^aids$|^covid-19$|^covid$')">
+        <xsl:value-of select="upper-case($s)"/>
+      </xsl:when>
+      <xsl:when test="matches(lower-case($s),'[1-4]d')">
+        <xsl:value-of select="upper-case($s)"/>
+      </xsl:when>
+      <xsl:otherwise>
+        <xsl:value-of select="concat(upper-case(substring($s, 1, 1)), lower-case(substring($s, 2)))"/>
+      </xsl:otherwise>
+    </xsl:choose>
+  </xsl:function>
+  <xsl:function name="e:titleCase" as="xs:string">
+    <xsl:param name="s" as="xs:string"/>
+    <xsl:choose>
+      
+      <xsl:when test="lower-case($s)='protein kinase a'">
+        <xsl:value-of select="'Protein Kinase A'"/>
+      </xsl:when>
+      <xsl:when test="contains($s,' ')">
+        <xsl:variable name="token1" select="substring-before($s,' ')"/>
+        <xsl:variable name="token2" select="substring-after($s,$token1)"/>
+        <xsl:choose>
+          <xsl:when test="lower-case($token1)='elife'">
+            <xsl:value-of select="concat('eLife',               ' ',               string-join(for $x in tokenize(substring-after($token2,' '),'\p{Zs}') return e:titleCaseToken($x),' ')               )"/>
+          </xsl:when>
+          <xsl:when test="matches(lower-case($token1),'^rna$|^dna$|^mri$|^hiv$|^tor$|^aids$|^covid-19$|^covid$')">
+            <xsl:value-of select="concat(upper-case($token1),               ' ',               string-join(for $x in tokenize(substring-after($token2,' '),'\p{Zs}') return e:titleCaseToken($x),' ')               )"/>
+          </xsl:when>
+          <xsl:when test="matches(lower-case($token1),'[1-4]d')">
+            <xsl:value-of select="concat(upper-case($token1),               ' ',               string-join(for $x in tokenize(substring-after($token2,' '),'\p{Zs}') return e:titleCaseToken($x),' ')               )"/>
+          </xsl:when>
+          <xsl:when test="contains($token1,'-')">
+            <xsl:value-of select="string-join(for $x in tokenize($s,'\p{Zs}') return e:titleCaseToken($x),' ')"/>
+          </xsl:when>
+          <xsl:otherwise>
+            <xsl:value-of select="concat(               concat(upper-case(substring($token1, 1, 1)), lower-case(substring($token1, 2))),               ' ',               string-join(for $x in tokenize(substring-after($token2,' '),'\p{Zs}') return e:titleCaseToken($x),' ')               )"/>
+          </xsl:otherwise>
+        </xsl:choose>
+      </xsl:when>
+      <xsl:when test="lower-case($s)='elife'">
+        <xsl:value-of select="'eLife'"/>
+      </xsl:when>
+      <xsl:when test="lower-case($s)=('and','or','the','an','of')">
+        <xsl:value-of select="lower-case($s)"/>
+      </xsl:when>
+      <xsl:when test="matches(lower-case($s),'^rna$|^dna$|^mri$|^hiv$|^tor$|^aids$|^covid-19$|^covid$')">
+        <xsl:value-of select="upper-case($s)"/>
+      </xsl:when>
+      <xsl:when test="matches(lower-case($s),'[1-4]d')">
+        <xsl:value-of select="upper-case($s)"/>
+      </xsl:when>
+      <xsl:otherwise>
+        <xsl:value-of select="e:titleCaseToken($s)"/>
+      </xsl:otherwise>
+    </xsl:choose>
+  </xsl:function>
+  <xsl:function name="e:article-type2title" as="xs:string">
+    <xsl:param name="s" as="xs:string"/>
+    <xsl:choose>
+      <xsl:when test="$s = 'Replication Study'">
+        <xsl:value-of select="'Replication Study:'"/>
+      </xsl:when>
+      <xsl:when test="$s = 'Registered Report'">
+        <xsl:value-of select="'Registered report:'"/>
+      </xsl:when>
+      <xsl:when test="$s = 'Correction'">
+        <xsl:value-of select="'Correction:'"/>
+      </xsl:when>
+      <xsl:when test="$s = 'Retraction'">
+        <xsl:value-of select="'Retraction:'"/>
+      </xsl:when>
+      <xsl:when test="$s = 'Expression of Concern'">
+        <xsl:value-of select="'Expression of Concern:'"/>
+      </xsl:when>
+      <xsl:otherwise>
+        <xsl:value-of select="'undefined'"/>
+      </xsl:otherwise>
+    </xsl:choose>
+  </xsl:function>
+  <xsl:function name="e:sec-type2title" as="xs:string">
+    <xsl:param name="s" as="xs:string"/>
+    <xsl:choose>
+      <xsl:when test="$s = 'intro'">
+        <xsl:value-of select="'Introduction'"/>
+      </xsl:when>
+      <xsl:when test="$s = 'results'">
+        <xsl:value-of select="'Results'"/>
+      </xsl:when>
+      <xsl:when test="$s = 'discussion'">
+        <xsl:value-of select="'Discussion'"/>
+      </xsl:when>
+      <xsl:when test="$s = 'materials|methods'">
+        <xsl:value-of select="'Materials and methods'"/>
+      </xsl:when>
+      <xsl:when test="$s = 'results|discussion'">
+        <xsl:value-of select="'Results and discussion'"/>
+      </xsl:when>
+      <xsl:when test="$s = 'methods'">
+        <xsl:value-of select="'Methods'"/>
+      </xsl:when>
+      <xsl:when test="$s = 'model'">
+        <xsl:value-of select="'Model'"/>
+      </xsl:when>
+      <xsl:when test="$s = 'additional-information'">
+        <xsl:value-of select="'Additional information'"/>
+      </xsl:when>
+      <xsl:when test="$s = 'supplementary-material'">
+        <xsl:value-of select="'Additional files'"/>
+      </xsl:when>
+      <xsl:when test="$s = 'data-availability'">
+        <xsl:value-of select="'Data availability'"/>
+      </xsl:when>
+      <xsl:otherwise>
+        <xsl:value-of select="'undefined'"/>
+      </xsl:otherwise>
+    </xsl:choose>
+  </xsl:function>
+  <xsl:function name="e:fig-id-type" as="xs:string">
+    <xsl:param name="s" as="xs:string"/>
+    <xsl:choose>
+      <xsl:when test="matches($s,'^fig[0-9]{1,3}$')">
+        <xsl:value-of select="'Figure'"/>
+      </xsl:when>
+      <xsl:when test="matches($s,'^fig[0-9]{1,3}s[0-9]{1,3}$')">
+        <xsl:value-of select="'Figure supplement'"/>
+      </xsl:when>
+      <xsl:when test="matches($s,'^box[0-9]{1,3}fig[0-9]{1,3}$')">
+        <xsl:value-of select="'Box figure'"/>
+      </xsl:when>
+      <xsl:when test="matches($s,'^app[0-9]{1,3}fig[0-9]{1,3}$')">
+        <xsl:value-of select="'Appendix figure'"/>
+      </xsl:when>
+      <xsl:when test="matches($s,'^app[0-9]{1,3}fig[0-9]{1,3}s[0-9]{1,3}$')">
+        <xsl:value-of select="'Appendix figure supplement'"/>
+      </xsl:when>
+      <xsl:when test="matches($s,'^respfig[0-9]{1,3}$|^sa[0-9]fig[0-9]{1,3}$')">
+        <xsl:value-of select="'Author response figure'"/>
+      </xsl:when>
+      <xsl:when test="matches($s,'^C[0-9]{1,3}$|^chem[0-9]{1,3}$')">
+        <xsl:value-of select="'Chemical structure'"/>
+      </xsl:when>
+      <xsl:when test="matches($s,'^app[0-9]{1,3}C[0-9]{1,3}$|^app[0-9]{1,3}chem[0-9]{1,3}$')">
+        <xsl:value-of select="'Appendix chemical structure'"/>
+      </xsl:when>
+      <xsl:when test="matches($s,'^S[0-9]{1,3}$|^scheme[0-9]{1,3}$')">
+        <xsl:value-of select="'Scheme'"/>
+      </xsl:when>
+      <xsl:when test="matches($s,'^app[0-9]{1,3}S[0-9]{1,3}$|^app[0-9]{1,3}scheme[0-9]{1,3}$')">
+        <xsl:value-of select="'Appendix scheme'"/>
+      </xsl:when>
+      <xsl:otherwise>
+        <xsl:value-of select="'undefined'"/>
+      </xsl:otherwise>
+    </xsl:choose>
+  </xsl:function>
+  <xsl:function name="e:stripDiacritics" as="xs:string">
+    <xsl:param name="string" as="xs:string"/>
+    <xsl:value-of select="replace(replace(replace(translate(normalize-unicode($string,'NFD'),'ƀȼđɇǥħɨıɉꝁłøɍŧɏƶ','bcdeghiijklortyz'),'[\p{M}’]',''),'æ','ae'),'ß','ss')"/>
+  </xsl:function>
+  <xsl:function name="e:ref-list-string" as="xs:string">
+    <xsl:param name="ref"/>
+    <xsl:choose>
+      <xsl:when test="$ref/element-citation[1]/person-group[1]/* and $ref/element-citation[1]/year">
+        <xsl:value-of select="concat(           replace(e:get-collab-or-surname($ref/element-citation[1]/person-group[1]/*[1]),'\p{Zs}',''),           ' ',           $ref/element-citation[1]/year[1],           ' ',           string-join(for $x in $ref/element-citation[1]/person-group[1]/*[position()=(2,3)]           return replace(e:get-collab-or-surname($x),'\p{Zs}',''),' ')           )"/>
+      </xsl:when>
+      <xsl:when test="$ref/element-citation/person-group[1]/*">
+        <xsl:value-of select="concat(           replace(e:get-collab-or-surname($ref/element-citation[1]/person-group[1]/*[1]),'\p{Zs}',''),           ' 9999 ',           string-join(for $x in $ref/element-citation[1]/person-group[1]/*[position()=(2,3)]           return replace(e:get-collab-or-surname($x),'\p{Zs}',''),' ')           )"/>
+      </xsl:when>
+      <xsl:when test="$ref/element-citation/year">
+        <xsl:value-of select="concat(' ',$ref/element-citation[1]/year[1])"/>
+      </xsl:when>
+      <xsl:otherwise>
+        <xsl:value-of select="'zzzzz 9999'"/>
+      </xsl:otherwise>
+    </xsl:choose>
+  </xsl:function>
+  <xsl:function name="e:ref-list-string2" as="xs:string">
+    <xsl:param name="ref"/>
+    <xsl:choose>
+      <xsl:when test="$ref/element-citation[1]/year and count($ref/element-citation[1]/person-group[1]/*) = 2">
+        <xsl:value-of select="concat(           e:get-collab-or-surname($ref/element-citation[1]/person-group[1]/*[1]),           ' ',           e:get-collab-or-surname($ref/element-citation[1]/person-group[1]/*[2]),           ' ',           $ref/element-citation[1]/year[1])"/>
+      </xsl:when>
+      <xsl:when test="$ref/element-citation/person-group[1]/* and $ref/element-citation[1]/year">
+        <xsl:value-of select="concat(           e:get-collab-or-surname($ref/element-citation[1]/person-group[1]/*[1]),           ' ',           $ref/element-citation[1]/year[1])"/>
+      </xsl:when>
+      <xsl:when test="$ref/element-citation/person-group[1]/*">
+        <xsl:value-of select="concat(           e:get-collab-or-surname($ref/element-citation[1]/person-group[1]/*[1]),           ' 9999 ')"/>
+      </xsl:when>
+      <xsl:when test="$ref/element-citation/year">
+        <xsl:value-of select="concat(' ',$ref/element-citation[1]/year[1])"/>
+      </xsl:when>
+      <xsl:otherwise>
+        <xsl:value-of select="'zzzzz 9999'"/>
+      </xsl:otherwise>
+    </xsl:choose>
+  </xsl:function>
+  <xsl:function name="e:get-collab-or-surname" as="xs:string?">
+    <xsl:param name="collab-or-name"/>
+    <xsl:choose>
+      <xsl:when test="$collab-or-name/name()='collab'">
+        <xsl:value-of select="e:stripDiacritics(replace(lower-case($collab-or-name),'\.',''))"/>
+      </xsl:when>
+      <xsl:when test="$collab-or-name/surname">
+        <xsl:value-of select="e:stripDiacritics(lower-case($collab-or-name/surname[1]))"/>
+      </xsl:when>
+      <xsl:otherwise/>
+    </xsl:choose>
+  </xsl:function>
+  <xsl:function name="e:cite-name-text" as="xs:string">
+    <xsl:param name="person-group"/>
+    <xsl:choose>
+      <xsl:when test="(count($person-group/*) = 1) and $person-group/name">
+        <xsl:value-of select="$person-group/name/surname[1]"/>
+      </xsl:when>
+      <xsl:when test="(count($person-group/*) = 1) and $person-group/collab">
+        <xsl:value-of select="$person-group/collab"/>
+      </xsl:when>
+      <xsl:when test="(count($person-group/*) = 2) and (count($person-group/name) = 1) and $person-group/*[1]/local-name() = 'collab'">
+        <xsl:value-of select="concat($person-group/collab,' and ',$person-group/name/surname[1])"/>
+      </xsl:when>
+      <xsl:when test="(count($person-group/*) = 2) and (count($person-group/name) = 1) and $person-group/*[1]/local-name() = 'name'">
+        <xsl:value-of select="concat($person-group/name/surname[1],' and ',$person-group/collab)"/>
+      </xsl:when>
+      <xsl:when test="(count($person-group/*) = 2) and (count($person-group/name) = 2)">
+        <xsl:value-of select="concat($person-group/name[1]/surname[1],' and ',$person-group/name[2]/surname[1])"/>
+      </xsl:when>
+      <xsl:when test="(count($person-group/*) = 2) and (count($person-group/collab) = 2)">
+        <xsl:value-of select="concat($person-group/collab[1],' and ',$person-group/collab[2])"/>
+      </xsl:when>
+      <xsl:when test="(count($person-group/*) ge 2) and $person-group/*[1]/local-name() = 'collab'">
+        <xsl:value-of select="concat($person-group/collab[1], ' et al.')"/>
+      </xsl:when>
+      <xsl:when test="(count($person-group/*) ge 2) and $person-group/*[1]/local-name() = 'name'">
+        <xsl:value-of select="concat($person-group/name[1]/surname[1], ' et al.')"/>
+      </xsl:when>
+      <xsl:otherwise>
+        <xsl:value-of select="'undetermined'"/>
+      </xsl:otherwise>
+    </xsl:choose>
+  </xsl:function>
+  <xsl:function name="e:citation-format1" as="xs:string">
+    <xsl:param name="element-citation"/>
+    <xsl:choose>
+      <xsl:when test="$element-citation/person-group and $element-citation//year">
+        <xsl:value-of select="concat(e:cite-name-text($element-citation/person-group[1]),', ',$element-citation/descendant::year[1])"/>
+      </xsl:when>
+      <xsl:when test="$element-citation/person-group and not($element-citation//year)">
+        <xsl:value-of select="concat(e:cite-name-text($element-citation/person-group[1]),', ')"/>
+      </xsl:when>
+      <xsl:when test="not($element-citation/person-group) and $element-citation//year">
+        <xsl:value-of select="concat('et al., ',$element-citation/descendant::year[1])"/>
+      </xsl:when>
+      <xsl:otherwise>
+        <xsl:value-of select="', '"/>
+      </xsl:otherwise>
+    </xsl:choose>
+  </xsl:function>
+  <xsl:function name="e:citation-format2" as="xs:string">
+    <xsl:param name="element-citation"/>
+    <xsl:choose>
+      <xsl:when test="$element-citation/person-group and $element-citation//year">
+        <xsl:value-of select="concat(e:cite-name-text($element-citation/person-group[1]),' (',$element-citation/descendant::year[1],')')"/>
+      </xsl:when>
+      <xsl:when test="$element-citation/person-group and not($element-citation//year)">
+        <xsl:value-of select="concat(e:cite-name-text($element-citation/person-group[1]),' ()')"/>
+      </xsl:when>
+      <xsl:when test="not($element-citation/person-group) and $element-citation//year">
+        <xsl:value-of select="concat('et al. (',$element-citation/descendant::year[1],')')"/>
+      </xsl:when>
+      <xsl:otherwise>
+        <xsl:value-of select="', '"/>
+      </xsl:otherwise>
+    </xsl:choose>
+  </xsl:function>
+  <xsl:function name="e:ref-cite-list">
+    <xsl:param name="ref-list" as="node()"/>
+    <xsl:element name="list">
+      <xsl:for-each select="$ref-list/ref[element-citation[year]]">
+        <xsl:variable name="cite" select="e:citation-format1(./element-citation[1])"/>
+        <xsl:element name="item">
+          <xsl:attribute name="id">
+            <xsl:value-of select="./@id"/>
+          </xsl:attribute>
+          <xsl:attribute name="no-suffix">
+            <xsl:value-of select="replace($cite,'[A-Za-z]$','')"/>
+          </xsl:attribute>
+          <xsl:value-of select="$cite"/>
+        </xsl:element>
+      </xsl:for-each>
+    </xsl:element>
+  </xsl:function>
+  <xsl:function name="e:non-distinct-citations">
+    <xsl:param name="cite-list" as="node()"/>
+    <xsl:element name="list">
+    <xsl:for-each select="$cite-list//*:item">
+      <xsl:variable name="cite" select="./string()"/>
+      <xsl:choose>
+        <xsl:when test="./preceding::*:item/string() = $cite">
+          <xsl:element name="item">
+            <xsl:attribute name="id">
+              <xsl:value-of select="./@id"/>
+            </xsl:attribute>
+            <xsl:value-of select="$cite"/>
+          </xsl:element>
+        </xsl:when>
+        <xsl:when test="not(matches($cite,'[A-Za-z]$')) and (./preceding::*:item/@no-suffix/string() = $cite)">
+          <xsl:element name="item">
+            <xsl:attribute name="id">
+              <xsl:value-of select="./@id"/>
+            </xsl:attribute>
+          <xsl:value-of select="$cite"/>
+          </xsl:element>
+        </xsl:when>
+        <xsl:when test="not(matches($cite,'[A-Za-z]$')) and ./following::*:item/@no-suffix/string() = $cite">
+          <xsl:element name="item">
+            <xsl:attribute name="id">
+              <xsl:value-of select="./@id"/>
+            </xsl:attribute>
+          <xsl:value-of select="$cite"/>
+          </xsl:element>
+        </xsl:when>
+        <xsl:otherwise/>
+      </xsl:choose>
+    </xsl:for-each>
+    </xsl:element>
+  </xsl:function>
+  <xsl:function name="e:get-name" as="xs:string">
+    <xsl:param name="name"/>
+    <xsl:choose>
+      <xsl:when test="$name/given-names[1] and $name/surname[1] and $name/suffix[1]">
+        <xsl:value-of select="concat($name/given-names[1],' ',$name/surname[1],' ',$name/suffix[1])"/>
+      </xsl:when>
+      <xsl:when test="not($name/given-names[1]) and $name/surname[1] and $name/suffix[1]">
+        <xsl:value-of select="concat($name/surname[1],' ',$name/suffix[1])"/>
+      </xsl:when>
+      <xsl:when test="$name/given-names[1] and $name/surname[1] and not($name/suffix[1])">
+        <xsl:value-of select="concat($name/given-names[1],' ',$name/surname[1])"/>
+      </xsl:when>
+      <xsl:when test="not($name/given-names[1]) and $name/surname[1] and not($name/suffix[1])">
+        <xsl:value-of select="$name/surname[1]"/>
+      </xsl:when>
+      <xsl:otherwise>
+        
+        <xsl:value-of select="'No elements present'"/>
+      </xsl:otherwise>
+    </xsl:choose>
+  </xsl:function>
+  <xsl:function name="e:get-collab">
+    <xsl:param name="collab"/>
+    <xsl:for-each select="$collab/(*|text())">
+      <xsl:choose>
+        <xsl:when test="./name()='contrib-group'"/>
+        <xsl:otherwise>
+          <xsl:value-of select="."/>
+        </xsl:otherwise>
+      </xsl:choose>
+    </xsl:for-each>
+  </xsl:function>
+  <xsl:function name="e:isbn-sum" as="xs:integer">
+    <xsl:param name="s" as="xs:string"/>
+    <xsl:choose>
+      <xsl:when test="string-length($s) = 10">
+        <xsl:variable name="d1" select="number(substring($s,1,1)) * 10"/>
+        <xsl:variable name="d2" select="number(substring($s,2,1)) * 9"/>
+        <xsl:variable name="d3" select="number(substring($s,3,1)) * 8"/>
+        <xsl:variable name="d4" select="number(substring($s,4,1)) * 7"/>
+        <xsl:variable name="d5" select="number(substring($s,5,1)) * 6"/>
+        <xsl:variable name="d6" select="number(substring($s,6,1)) * 5"/>
+        <xsl:variable name="d7" select="number(substring($s,7,1)) * 4"/>
+        <xsl:variable name="d8" select="number(substring($s,8,1)) * 3"/>
+        <xsl:variable name="d9" select="number(substring($s,9,1)) * 2"/>
+        <xsl:variable name="d10" select="number(substring($s,10,1)) * 1"/>
+        <xsl:value-of select="number($d1 + $d2 + $d3 + $d4 + $d5 + $d6 + $d7 + $d8 + $d9 + $d10) mod 11"/>
+      </xsl:when>
+      <xsl:when test="string-length($s) = 13">
+        <xsl:variable name="d1" select="number(substring($s,1,1))"/>
+        <xsl:variable name="d2" select="number(substring($s,2,1)) * 3"/>
+        <xsl:variable name="d3" select="number(substring($s,3,1))"/>
+        <xsl:variable name="d4" select="number(substring($s,4,1)) * 3"/>
+        <xsl:variable name="d5" select="number(substring($s,5,1))"/>
+        <xsl:variable name="d6" select="number(substring($s,6,1)) * 3"/>
+        <xsl:variable name="d7" select="number(substring($s,7,1))"/>
+        <xsl:variable name="d8" select="number(substring($s,8,1)) * 3"/>
+        <xsl:variable name="d9" select="number(substring($s,9,1))"/>
+        <xsl:variable name="d10" select="number(substring($s,10,1)) * 3"/>
+        <xsl:variable name="d11" select="number(substring($s,11,1))"/>
+        <xsl:variable name="d12" select="number(substring($s,12,1)) * 3"/>
+        <xsl:variable name="d13" select="number(substring($s,13,1))"/>
+        <xsl:value-of select="number($d1 + $d2 + $d3 + $d4 + $d5 + $d6 + $d7 + $d8 + $d9 + $d10 + $d11 + $d12 + $d13) mod 10"/>
+      </xsl:when>
+      <xsl:otherwise>
+        <xsl:value-of select="number('1')"/>
+      </xsl:otherwise>
+    </xsl:choose>
+  </xsl:function>
+  <xsl:function name="e:escape-for-regex" as="xs:string">
+    <xsl:param name="arg" as="xs:string?"/>
+    <xsl:sequence select="replace($arg,'(\.|\[|\]|\\|\||\-|\^|\$|\?|\*|\+|\{|\}|\(|\))','\\$1')"/>
+  </xsl:function>
+  <xsl:function name="e:get-ordinal" as="xs:string">
+    <xsl:param name="value" as="xs:integer?"/>
+    <xsl:if test="translate(string($value), '0123456789', '') = '' and number($value) &gt; 0">
+      <xsl:variable name="mod100" select="$value mod 100"/>
+      <xsl:variable name="mod10" select="$value mod 10"/>
+      <xsl:choose>
+        <xsl:when test="$mod100 = 11 or $mod100 = 12 or $mod100 = 13">
+          <xsl:value-of select="concat($value,'th')"/>
+        </xsl:when>
+        <xsl:when test="$mod10 = 1">
+          <xsl:value-of select="concat($value,'st')"/>
+        </xsl:when>
+        <xsl:when test="$mod10 = 2">
+          <xsl:value-of select="concat($value,'nd')"/>
+        </xsl:when>
+        <xsl:when test="$mod10 = 3">
+          <xsl:value-of select="concat($value,'rd')"/>
+        </xsl:when>
+        <xsl:otherwise>
+          <xsl:value-of select="concat($value,'th')"/>
+        </xsl:otherwise>
+      </xsl:choose>
+    </xsl:if>
+  </xsl:function>
+  <let name="org-regex" value="'b\.\p{Zs}?subtilis|bacillus\p{Zs}?subtilis|d\.\p{Zs}?melanogaster|drosophila\p{Zs}?melanogaster|e\.\p{Zs}?coli|escherichia\p{Zs}?coli|s\.\p{Zs}?pombe|schizosaccharomyces\p{Zs}?pombe|s\.\p{Zs}?cerevisiae|saccharomyces\p{Zs}?cerevisiae|c\.\p{Zs}?elegans|caenorhabditis\p{Zs}?elegans|a\.\p{Zs}?thaliana|arabidopsis\p{Zs}?thaliana|m\.\p{Zs}?thermophila|myceliophthora\p{Zs}?thermophila|dictyostelium|p\.\p{Zs}?falciparum|plasmodium\p{Zs}?falciparum|s\.\p{Zs}?enterica|salmonella\p{Zs}?enterica|s\.\p{Zs}?pyogenes|streptococcus\p{Zs}?pyogenes|p\.\p{Zs}?dumerilii|platynereis\p{Zs}?dumerilii|p\.\p{Zs}?cynocephalus|papio\p{Zs}?cynocephalus|o\.\p{Zs}?fasciatus|oncopeltus\p{Zs}?fasciatus|n\.\p{Zs}?crassa|neurospora\p{Zs}?crassa|c\.\p{Zs}?intestinalis|ciona\p{Zs}?intestinalis|e\.\p{Zs}?cuniculi|encephalitozoon\p{Zs}?cuniculi|h\.\p{Zs}?salinarum|halobacterium\p{Zs}?salinarum|s\.\p{Zs}?solfataricus|sulfolobus\p{Zs}?solfataricus|s\.\p{Zs}?mediterranea|schmidtea\p{Zs}?mediterranea|s\.\p{Zs}?rosetta|salpingoeca\p{Zs}?rosetta|n\.\p{Zs}?vectensis|nematostella\p{Zs}?vectensis|s\.\p{Zs}?aureus|staphylococcus\p{Zs}?aureus|v\.\p{Zs}?cholerae|vibrio\p{Zs}?cholerae|t\.\p{Zs}?thermophila|tetrahymena\p{Zs}?thermophila|c\.\p{Zs}?reinhardtii|chlamydomonas\p{Zs}?reinhardtii|n\.\p{Zs}?attenuata|nicotiana\p{Zs}?attenuata|e\.\p{Zs}?carotovora|erwinia\p{Zs}?carotovora|e\.\p{Zs}?faecalis|h\.\p{Zs}?sapiens|homo\p{Zs}?sapiens|c\.\p{Zs}?trachomatis|chlamydia\p{Zs}?trachomatis|enterococcus\p{Zs}?faecalis|x\.\p{Zs}?laevis|xenopus\p{Zs}?laevis|x\.\p{Zs}?tropicalis|xenopus\p{Zs}?tropicalis|m\.\p{Zs}?musculus|mus\p{Zs}?musculus|d\.\p{Zs}?immigrans|drosophila\p{Zs}?immigrans|d\.\p{Zs}?subobscura|drosophila\p{Zs}?subobscura|d\.\p{Zs}?affinis|drosophila\p{Zs}?affinis|d\.\p{Zs}?obscura|drosophila\p{Zs}?obscura|f\.\p{Zs}?tularensis|francisella\p{Zs}?tularensis|p\.\p{Zs}?plantaginis|podosphaera\p{Zs}?plantaginis|p\.\p{Zs}?lanceolata|plantago\p{Zs}?lanceolata|m\.\p{Zs}?trossulus|mytilus\p{Zs}?trossulus|m\.\p{Zs}?edulis|mytilus\p{Zs}?edulis|m\.\p{Zs}?chilensis|mytilus\p{Zs}?chilensis|u\.\p{Zs}?maydis|ustilago\p{Zs}?maydis|p\.\p{Zs}?knowlesi|plasmodium\p{Zs}?knowlesi|p\.\p{Zs}?aeruginosa|pseudomonas\p{Zs}?aeruginosa|t\.\p{Zs}?brucei|trypanosoma\p{Zs}?brucei|t\.\p{Zs}?gondii|toxoplasma\p{Zs}?gondii|d\.\p{Zs}?rerio|danio\p{Zs}?rerio|yimenosaurus|lesothosaurus\p{Zs}?diagnosticus|l\.\p{Zs}?diagnosticus|scelidosaurus\p{Zs}?harrisonii|s\.\p{Zs}?harrisonii|haya\p{Zs}?griva|h\.\p{Zs}?griva|polacanthus\p{Zs}?foxii|p\.\p{Zs}?foxii|scutellosaurus\p{Zs}?lawleri|s\.\p{Zs}?lawleri|saichania\p{Zs}?chulsanensis|s\.\p{Zs}?chulsanensis|gargoyleosaurus\p{Zs}?parkpinorum|g\.\p{Zs}?parkpinorum|europelta\p{Zs}?carbonensis|e\.\p{Zs}?carbonensis|stegosaurus\p{Zs}?stenops|s\.\p{Zs}?stenops|pinacosaurus\p{Zs}?grangeri|p\.\p{Zs}?grangeri|tatisaurus\p{Zs}?oehleri|t\.\p{Zs}?oehleri|hungarosaurus\p{Zs}?tormai|h\.\p{Zs}?tormai|bienosaurus\p{Zs}?lufengensis|b\.\p{Zs}?lufengensis|fabrosaurus\p{Zs}?australis|f\.\p{Zs}?australis|chinshakiangosaurus\p{Zs}?chunghoensis|c\.\p{Zs}?chunghoensis|euoplocephalus\p{Zs}?tutus|e\.\p{Zs}?tutus|drosophila|xenopus|salmonella|g\.\p{Zs}?beringei|gorilla\p{Zs}?beringei|m\.\p{Zs}?assamensis|macaca\p{Zs}?assamensis|m\.\p{Zs}?fuscata|macaca\p{Zs}?fuscata|m\.\p{Zs}?mulatta|macaca\p{Zs}?mulatta|m\.\p{Zs}?nemestrina|macaca\p{Zs}?nemestrina|m\.\p{Zs}?sphinx|mandrillus\p{Zs}?sphinx|p\.\p{Zs}?anubis|papio\p{Zs}?anubis|p\.\p{Zs}?hamadryas|papio\p{Zs}?hamadryas|p\.\p{Zs}?paniscus|pan\p{Zs}?paniscus|p\.\p{Zs}?troglodytes|pan\p{Zs}?troglodytes'"/>
+  <let name="sec-title-regex" value="string-join(     for $x in tokenize($org-regex,'\|')     return concat('^',$x,'$')     ,'|')"/>
+  <xsl:function name="e:org-conform" as="xs:string">
+  <xsl:param name="s" as="xs:string"/>
+  <xsl:choose>
+    <xsl:when test="matches($s,'b\.\p{Zs}?subtilis')">
+      <xsl:value-of select="'B. subtilis'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'bacillus\p{Zs}?subtilis')">
+      <xsl:value-of select="'Bacillus subtilis'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'d\.\p{Zs}?melanogaster')">
+      <xsl:value-of select="'D. melanogaster'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'drosophila\p{Zs}?melanogaster')">
+      <xsl:value-of select="'Drosophila melanogaster'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'e\.\p{Zs}?coli')">
+      <xsl:value-of select="'E. coli'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'escherichia\p{Zs}?coli')">
+      <xsl:value-of select="'Escherichia coli'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'s\.\p{Zs}?pombe')">
+      <xsl:value-of select="'S. pombe'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'schizosaccharomyces\p{Zs}?pombe')">
+      <xsl:value-of select="'Schizosaccharomyces pombe'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'s\.\p{Zs}?cerevisiae')">
+      <xsl:value-of select="'S. cerevisiae'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'saccharomyces\p{Zs}?cerevisiae')">
+      <xsl:value-of select="'Saccharomyces cerevisiae'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'c\.\p{Zs}?elegans')">
+      <xsl:value-of select="'C. elegans'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'caenorhabditis\p{Zs}?elegans')">
+      <xsl:value-of select="'Caenorhabditis elegans'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'a\.\p{Zs}?thaliana')">
+      <xsl:value-of select="'A. thaliana'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'arabidopsis\p{Zs}?thaliana')">
+      <xsl:value-of select="'Arabidopsis thaliana'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'m\.\p{Zs}?thermophila')">
+      <xsl:value-of select="'M. thermophila'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'myceliophthora\p{Zs}?thermophila')">
+      <xsl:value-of select="'Myceliophthora thermophila'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'dictyostelium')">
+      <xsl:value-of select="'Dictyostelium'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'p\.\p{Zs}?falciparum')">
+      <xsl:value-of select="'P. falciparum'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'plasmodium\p{Zs}?falciparum')">
+      <xsl:value-of select="'Plasmodium falciparum'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'s\.\p{Zs}?enterica')">
+      <xsl:value-of select="'S. enterica'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'salmonella\p{Zs}?enterica')">
+      <xsl:value-of select="'Salmonella enterica'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'s\.\p{Zs}?pyogenes')">
+      <xsl:value-of select="'S. pyogenes'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'streptococcus\p{Zs}?pyogenes')">
+      <xsl:value-of select="'Streptococcus pyogenes'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'p\.\p{Zs}?dumerilii')">
+      <xsl:value-of select="'P. dumerilii'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'platynereis\p{Zs}?dumerilii')">
+      <xsl:value-of select="'Platynereis dumerilii'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'p\.\p{Zs}?cynocephalus')">
+      <xsl:value-of select="'P. cynocephalus'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'papio\p{Zs}?cynocephalus')">
+      <xsl:value-of select="'Papio cynocephalus'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'o\.\p{Zs}?fasciatus')">
+      <xsl:value-of select="'O. fasciatus'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'oncopeltus\p{Zs}?fasciatus')">
+      <xsl:value-of select="'Oncopeltus fasciatus'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'n\.\p{Zs}?crassa')">
+      <xsl:value-of select="'N. crassa'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'neurospora\p{Zs}?crassa')">
+      <xsl:value-of select="'Neurospora crassa'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'c\.\p{Zs}?intestinalis')">
+      <xsl:value-of select="'C. intestinalis'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'ciona\p{Zs}?intestinalis')">
+      <xsl:value-of select="'Ciona intestinalis'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'e\.\p{Zs}?cuniculi')">
+      <xsl:value-of select="'E. cuniculi'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'encephalitozoon\p{Zs}?cuniculi')">
+      <xsl:value-of select="'Encephalitozoon cuniculi'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'h\.\p{Zs}?salinarum')">
+      <xsl:value-of select="'H. salinarum'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'halobacterium\p{Zs}?salinarum')">
+      <xsl:value-of select="'Halobacterium salinarum'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'s\.\p{Zs}?solfataricus')">
+      <xsl:value-of select="'S. solfataricus'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'sulfolobus\p{Zs}?solfataricus')">
+      <xsl:value-of select="'Sulfolobus solfataricus'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'s\.\p{Zs}?mediterranea')">
+      <xsl:value-of select="'S. mediterranea'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'schmidtea\p{Zs}?mediterranea')">
+      <xsl:value-of select="'Schmidtea mediterranea'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'s\.\p{Zs}?rosetta')">
+      <xsl:value-of select="'S. rosetta'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'salpingoeca\p{Zs}?rosetta')">
+      <xsl:value-of select="'Salpingoeca rosetta'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'n\.\p{Zs}?vectensis')">
+      <xsl:value-of select="'N. vectensis'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'nematostella\p{Zs}?vectensis')">
+      <xsl:value-of select="'Nematostella vectensis'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'s\.\p{Zs}?aureus')">
+      <xsl:value-of select="'S. aureus'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'staphylococcus\p{Zs}?aureus')">
+      <xsl:value-of select="'Staphylococcus aureus'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'v\.\p{Zs}?cholerae')">
+      <xsl:value-of select="'V. cholerae'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'vibrio\p{Zs}?cholerae')">
+      <xsl:value-of select="'Vibrio cholerae'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'t\.\p{Zs}?thermophila')">
+      <xsl:value-of select="'T. thermophila'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'tetrahymena\p{Zs}?thermophila')">
+      <xsl:value-of select="'Tetrahymena thermophila'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'c\.\p{Zs}?reinhardtii')">
+      <xsl:value-of select="'C. reinhardtii'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'chlamydomonas\p{Zs}?reinhardtii')">
+      <xsl:value-of select="'Chlamydomonas reinhardtii'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'n\.\p{Zs}?attenuata')">
+      <xsl:value-of select="'N. attenuata'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'nicotiana\p{Zs}?attenuata')">
+      <xsl:value-of select="'Nicotiana attenuata'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'e\.\p{Zs}?carotovora')">
+      <xsl:value-of select="'E. carotovora'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'erwinia\p{Zs}?carotovora')">
+      <xsl:value-of select="'Erwinia carotovora'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'e\.\p{Zs}?faecalis')">
+      <xsl:value-of select="'E. faecalis'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'h\.\p{Zs}?sapiens')">
+      <xsl:value-of select="'H. sapiens'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'homo\p{Zs}?sapiens')">
+      <xsl:value-of select="'Homo sapiens'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'c\.\p{Zs}?trachomatis')">
+      <xsl:value-of select="'C. trachomatis'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'chlamydia\p{Zs}?trachomatis')">
+      <xsl:value-of select="'Chlamydia trachomatis'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'enterococcus\p{Zs}?faecalis')">
+      <xsl:value-of select="'Enterococcus faecalis'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'x\.\p{Zs}?laevis')">
+      <xsl:value-of select="'X. laevis'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'xenopus\p{Zs}?laevis')">
+      <xsl:value-of select="'Xenopus laevis'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'x\.\p{Zs}?tropicalis')">
+      <xsl:value-of select="'X. tropicalis'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'xenopus\p{Zs}?tropicalis')">
+      <xsl:value-of select="'Xenopus tropicalis'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'m\.\p{Zs}?musculus')">
+      <xsl:value-of select="'M. musculus'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'mus\p{Zs}?musculus')">
+      <xsl:value-of select="'Mus musculus'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'d\.\p{Zs}?immigrans')">
+      <xsl:value-of select="'D. immigrans'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'drosophila\p{Zs}?immigrans')">
+      <xsl:value-of select="'Drosophila immigrans'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'d\.\p{Zs}?subobscura')">
+      <xsl:value-of select="'D. subobscura'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'drosophila\p{Zs}?subobscura')">
+      <xsl:value-of select="'Drosophila subobscura'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'d\.\p{Zs}?affinis')">
+      <xsl:value-of select="'D. affinis'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'drosophila\p{Zs}?affinis')">
+      <xsl:value-of select="'Drosophila affinis'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'d\.\p{Zs}?obscura')">
+      <xsl:value-of select="'D. obscura'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'drosophila\p{Zs}?obscura')">
+      <xsl:value-of select="'Drosophila obscura'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'f\.\p{Zs}?tularensis')">
+      <xsl:value-of select="'F. tularensis'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'francisella\p{Zs}?tularensis')">
+      <xsl:value-of select="'Francisella tularensis'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'p\.\p{Zs}?plantaginis')">
+      <xsl:value-of select="'P. plantaginis'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'podosphaera\p{Zs}?plantaginis')">
+      <xsl:value-of select="'Podosphaera plantaginis'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'p\.\p{Zs}?lanceolata')">
+      <xsl:value-of select="'P. lanceolata'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'plantago\p{Zs}?lanceolata')">
+      <xsl:value-of select="'Plantago lanceolata'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'m\.\p{Zs}?trossulus')">
+      <xsl:value-of select="'M. trossulus'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'mytilus\p{Zs}?trossulus')">
+      <xsl:value-of select="'Mytilus trossulus'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'m\.\p{Zs}?edulis')">
+      <xsl:value-of select="'M. edulis'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'mytilus\p{Zs}?edulis')">
+      <xsl:value-of select="'Mytilus edulis'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'m\.\p{Zs}?chilensis')">
+      <xsl:value-of select="'M. chilensis'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'mytilus\p{Zs}?chilensis')">
+      <xsl:value-of select="'Mytilus chilensis'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'u\.\p{Zs}?maydis')">
+      <xsl:value-of select="'U. maydis'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'ustilago\p{Zs}?maydis')">
+      <xsl:value-of select="'Ustilago maydis'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'p\.\p{Zs}?knowlesi')">
+      <xsl:value-of select="'P. knowlesi'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'plasmodium\p{Zs}?knowlesi')">
+      <xsl:value-of select="'Plasmodium knowlesi'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'p\.\p{Zs}?aeruginosa')">
+      <xsl:value-of select="'P. aeruginosa'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'pseudomonas\p{Zs}?aeruginosa')">
+      <xsl:value-of select="'Pseudomonas aeruginosa'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'t\.\p{Zs}?brucei')">
+      <xsl:value-of select="'T. brucei'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'trypanosoma\p{Zs}?brucei')">
+      <xsl:value-of select="'Trypanosoma brucei'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'caulobacter\p{Zs}?crescentus')">
+      <xsl:value-of select="'Caulobacter crescentus'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'c\.\p{Zs}?crescentus')">
+      <xsl:value-of select="'C. crescentus'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'agrobacterium\p{Zs}?tumefaciens')">
+      <xsl:value-of select="'Agrobacterium tumefaciens'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'a\.\p{Zs}?tumefaciens')">
+      <xsl:value-of select="'A. tumefaciens'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'t\.\p{Zs}?gondii')">
+      <xsl:value-of select="'T. gondii'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'toxoplasma\p{Zs}?gondii')">
+      <xsl:value-of select="'Toxoplasma gondii'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'d\.\p{Zs}?rerio')">
+      <xsl:value-of select="'D. rerio'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'danio\p{Zs}?rerio')">
+      <xsl:value-of select="'Danio rerio'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'drosophila')">
+      <xsl:value-of select="'Drosophila'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'yimenosaurus')">
+      <xsl:value-of select="'Yimenosaurus'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'lesothosaurus\p{Zs}?diagnosticus')">
+      <xsl:value-of select="'Lesothosaurus diagnosticus'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'l.\p{Zs}?diagnosticus')">
+      <xsl:value-of select="'L. diagnosticus'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'scelidosaurus\p{Zs}?harrisonii')">
+      <xsl:value-of select="'Scelidosaurus harrisonii'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'s.\p{Zs}?harrisonii')">
+      <xsl:value-of select="'S. harrisonii'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'haya\p{Zs}?griva')">
+      <xsl:value-of select="'Haya griva'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'h.\p{Zs}?griva')">
+      <xsl:value-of select="'H. griva'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'polacanthus\p{Zs}?foxii')">
+      <xsl:value-of select="'Polacanthus foxii'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'p.\p{Zs}?foxii')">
+      <xsl:value-of select="'P. foxii'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'scutellosaurus\p{Zs}?lawleri')">
+      <xsl:value-of select="'Scutellosaurus lawleri'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'s.\p{Zs}?lawleri')">
+      <xsl:value-of select="'S. lawleri'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'saichania\p{Zs}?chulsanensis')">
+      <xsl:value-of select="'Saichania chulsanensis'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'s.\p{Zs}?chulsanensis')">
+      <xsl:value-of select="'S. chulsanensis'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'gargoyleosaurus\p{Zs}?parkpinorum')">
+      <xsl:value-of select="'Gargoyleosaurus parkpinorum'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'g.\p{Zs}?parkpinorum')">
+      <xsl:value-of select="'G. parkpinorum'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'europelta\p{Zs}?carbonensis')">
+      <xsl:value-of select="'Europelta carbonensis'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'e.\p{Zs}?carbonensis')">
+      <xsl:value-of select="'E. carbonensis'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'stegosaurus\p{Zs}?stenops')">
+      <xsl:value-of select="'Stegosaurus stenops'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'s.\p{Zs}?stenops')">
+      <xsl:value-of select="'S. stenops'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'pinacosaurus\p{Zs}?grangeri')">
+      <xsl:value-of select="'Pinacosaurus grangeri'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'p.\p{Zs}?grangeri')">
+      <xsl:value-of select="'P. grangeri'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'tatisaurus\p{Zs}?oehleri')">
+      <xsl:value-of select="'Tatisaurus oehleri'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'t.\p{Zs}?oehleri')">
+      <xsl:value-of select="'T. oehleri'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'hungarosaurus\p{Zs}?tormai')">
+      <xsl:value-of select="'Hungarosaurus tormai'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'h.\p{Zs}?tormai')">
+      <xsl:value-of select="'H. tormai'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'lesothosaurus\p{Zs}?diagnosticus')">
+      <xsl:value-of select="'Lesothosaurus diagnosticus'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'l.\p{Zs}?diagnosticus')">
+      <xsl:value-of select="'L. diagnosticus'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'bienosaurus\p{Zs}?lufengensis')">
+      <xsl:value-of select="'Bienosaurus lufengensis'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'b.\p{Zs}?lufengensis')">
+      <xsl:value-of select="'B. lufengensis'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'fabrosaurus\p{Zs}?australis')">
+      <xsl:value-of select="'Fabrosaurus australis'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'f.\p{Zs}?australis')">
+      <xsl:value-of select="'F. australis'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'chinshakiangosaurus\p{Zs}?chunghoensis')">
+      <xsl:value-of select="'Chinshakiangosaurus chunghoensis'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'c.\p{Zs}?chunghoensis')">
+      <xsl:value-of select="'C. chunghoensis'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'euoplocephalus\p{Zs}?tutus')">
+      <xsl:value-of select="'Euoplocephalus tutus'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'e.\p{Zs}?tutus')">
+      <xsl:value-of select="'E. tutus'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'g\.\p{Zs}?beringei')">
+      <xsl:value-of select="'G. beringei'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'gorilla\p{Zs}?beringei')">
+      <xsl:value-of select="'Gorilla beringei'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'m\.\p{Zs}?assamensis')">
+      <xsl:value-of select="'M. assamensis'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'macaca\p{Zs}?assamensis')">
+      <xsl:value-of select="'Macaca assamensis'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'m\.\p{Zs}?fuscata')">
+      <xsl:value-of select="'M. fuscata'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'macaca\p{Zs}?fuscata')">
+      <xsl:value-of select="'Macaca fuscata'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'m\.\p{Zs}?mulatta')">
+      <xsl:value-of select="'M. mulatta'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'macaca\p{Zs}?mulatta')">
+      <xsl:value-of select="'Macaca mulatta'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'m\.\p{Zs}?nemestrina')">
+      <xsl:value-of select="'M. nemestrina'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'macaca\p{Zs}?nemestrina')">
+      <xsl:value-of select="'Macaca nemestrina'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'m\.\p{Zs}?sphinx')">
+      <xsl:value-of select="'M. sphinx'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'mandrillus\p{Zs}?sphinx')">
+      <xsl:value-of select="'Mandrillus sphinx'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'p\.\p{Zs}?anubis')">
+      <xsl:value-of select="'P. anubis'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'papio\p{Zs}?anubis')">
+      <xsl:value-of select="'Papio anubis'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'p\.\p{Zs}?hamadryas')">
+      <xsl:value-of select="'P. hamadryas'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'papio\p{Zs}?hamadryas')">
+      <xsl:value-of select="'Papio hamadryas'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'p\.\p{Zs}?paniscus')">
+      <xsl:value-of select="'P. paniscus'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'pan\p{Zs}?paniscus')">
+      <xsl:value-of select="'Pan paniscus'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'p\.\p{Zs}?troglodytes')">
+      <xsl:value-of select="'P. troglodytes'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'pan\p{Zs}?troglodytes')">
+      <xsl:value-of select="'Pan troglodytes'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'xenopus')">
+      <xsl:value-of select="'Xenopus'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'salmonella')">
+      <xsl:value-of select="'Salmonella'"/>
+    </xsl:when>
+    <xsl:otherwise>
+      <xsl:value-of select="'undefined'"/>
+    </xsl:otherwise>
+  </xsl:choose>
+</xsl:function>
+  <xsl:function name="e:code-check">
+    <xsl:param name="s" as="xs:string"/>
+    <xsl:element name="code">
+      <xsl:if test="contains($s,'github')">
+        <xsl:element name="match">
+        <xsl:value-of select="'github '"/>
+        </xsl:element>
+      </xsl:if>
+      <xsl:if test="contains($s,'gitlab')">
+        <xsl:element name="match">
+        <xsl:value-of select="'gitlab '"/>
+        </xsl:element>
+      </xsl:if>
+      <xsl:if test="contains($s,'git.exeter.ac.uk')">
+        <xsl:element name="match">
+          <xsl:value-of select="'git.exeter.ac.uk '"/>
+        </xsl:element>
+      </xsl:if>
+      <xsl:if test="contains($s,'codeplex')">
+        <xsl:element name="match">
+        <xsl:value-of select="'codeplex '"/>
+        </xsl:element>
+      </xsl:if>
+      <xsl:if test="contains($s,'sourceforge')">
+        <xsl:element name="match">
+        <xsl:value-of select="'sourceforge '"/>
+        </xsl:element>
+      </xsl:if>
+      <xsl:if test="contains($s,'bitbucket')">
+        <xsl:element name="match">
+        <xsl:value-of select="'bitbucket '"/>
+        </xsl:element>
+      </xsl:if>
+      <xsl:if test="contains($s,'assembla ')">
+        <xsl:element name="match">
+        <xsl:value-of select="'assembla '"/>
+        </xsl:element>
+      </xsl:if>
+    </xsl:element>
+  </xsl:function>
+  <xsl:function name="e:get-xrefs">
+    <xsl:param name="article"/>
+    <xsl:param name="object-id"/>
+    <xsl:param name="object-type"/>
+    <xsl:variable name="object-no" select="replace($object-id,'[^0-9]','')"/>
+    <xsl:element name="matches">
+      <xsl:for-each select="$article//xref[(@ref-type=$object-type) and not(ancestor::caption)]">
+        <xsl:variable name="rid-no" select="replace(./@rid,'[^0-9]','')"/>
+        <xsl:variable name="text-no" select="tokenize(normalize-space(replace(.,'[^0-9]',' ')),'\p{Zs}')[last()]"/>
+        <xsl:choose>
+          <xsl:when test="./@rid = $object-id">
+            <xsl:element name="match">
+              <xsl:attribute name="sec-id">
+                <xsl:value-of select="./ancestor::sec[1]/@id"/>
+              </xsl:attribute>
+              <xsl:value-of select="self::*"/>
+            </xsl:element>
+          </xsl:when>
+          <xsl:when test="contains(./@rid,'app')"/>
+          <xsl:when test="($rid-no lt $object-no) and (./following-sibling::text()[1] = '–') and (./following-sibling::*[1]/name()='xref') and (number(replace(replace(./following-sibling::xref[1]/@rid,'\-','.'),'[a-z]','')) gt number($object-no))">
+            <xsl:element name="match">
+              <xsl:attribute name="sec-id">
+                <xsl:value-of select="./ancestor::sec[1]/@id"/>
+              </xsl:attribute>
+              <xsl:value-of select="self::*"/>
+            </xsl:element>
+          </xsl:when>
+          <xsl:when test="($rid-no lt $object-no) and contains(.,$object-no) and (contains(.,'Videos') or contains(.,'videos') and contains(.,'–'))">
+            <xsl:element name="match">
+              <xsl:attribute name="sec-id">
+                <xsl:value-of select="./ancestor::sec[1]/@id"/>
+              </xsl:attribute>
+              <xsl:value-of select="self::*"/>
+            </xsl:element>
+          </xsl:when>
+          <xsl:when test="($rid-no lt $object-no) and (contains(.,'Videos') or contains(.,'videos') and contains(.,'—')) and ($text-no gt $object-no)">
+            <xsl:element name="match">
+              <xsl:attribute name="sec-id">
+                <xsl:value-of select="./ancestor::sec[1]/@id"/>
+              </xsl:attribute>
+              <xsl:value-of select="self::*"/>
+            </xsl:element>
+          </xsl:when>
+          <xsl:otherwise/>
+        </xsl:choose>
+      </xsl:for-each>
+    </xsl:element>
+  </xsl:function>
+  <xsl:function name="e:get-iso-pub-date">
+    <xsl:param name="element"/>
+    <xsl:choose>
+      <xsl:when test="$element/ancestor-or-self::article//article-meta/pub-date[(@date-type='publication') or (@date-type='pub')]/month">
+        <xsl:variable name="pub-date" select="$element/ancestor-or-self::article//article-meta/pub-date[(@date-type='publication') or (@date-type='pub')]"/>
+        <xsl:value-of select="concat($pub-date/year,'-',$pub-date/month,'-',$pub-date/day)"/>
+      </xsl:when>
+      <xsl:otherwise/>
+    </xsl:choose>
+  </xsl:function>
+  <xsl:function name="e:get-copyright-holder">
+    <xsl:param name="contrib-group"/>
+    <xsl:variable name="author-count" select="count($contrib-group/contrib[@contrib-type='author'])"/>
+    <xsl:choose>
+      <xsl:when test="$author-count lt 1"/>
+      <xsl:when test="$author-count = 1">
+        <xsl:choose>
+          <xsl:when test="$contrib-group/contrib[@contrib-type='author']/collab">
+            <xsl:value-of select="$contrib-group/contrib[@contrib-type='author']/collab[1]/text()[1]"/>
+          </xsl:when>
+          <xsl:otherwise>
+            <xsl:value-of select="$contrib-group/contrib[@contrib-type='author']/name[1]/surname[1]"/>
+          </xsl:otherwise>
+        </xsl:choose>
+      </xsl:when>
+      <xsl:when test="$author-count = 2">
+        <xsl:choose>
+          <xsl:when test="$contrib-group/contrib[@contrib-type='author']/collab">
+            <xsl:choose>
+              <xsl:when test="$contrib-group/contrib[@contrib-type='author'][1]/collab and $contrib-group/contrib[@contrib-type='author'][2]/collab">
+                <xsl:value-of select="concat($contrib-group/contrib[@contrib-type='author']/collab[1]/text()[1],' and ',$contrib-group/contrib[@contrib-type='author']/collab[2]/text()[1])"/>
+              </xsl:when>
+              <xsl:when test="$contrib-group/contrib[@contrib-type='author'][1]/collab">
+                <xsl:value-of select="concat($contrib-group/contrib[@contrib-type='author'][1]/collab[1]/text()[1],' and ',$contrib-group/contrib[@contrib-type='author'][2]/name[1]/surname[1])"/>
+              </xsl:when>
+              <xsl:otherwise>
+                <xsl:value-of select="concat($contrib-group/contrib[@contrib-type='author'][1]/name[1]/surname[1],' and ',$contrib-group/contrib[@contrib-type='author'][2]/collab[1]/text()[1])"/>
+              </xsl:otherwise>
+            </xsl:choose>
+          </xsl:when>
+          <xsl:otherwise>
+            <xsl:value-of select="concat($contrib-group/contrib[@contrib-type='author'][1]/name[1]/surname[1],' and ',$contrib-group/contrib[@contrib-type='author'][2]/name[1]/surname[1])"/>
+          </xsl:otherwise>
+        </xsl:choose>
+      </xsl:when>
+      
+      <xsl:otherwise>
+        <xsl:variable name="is-equal-contrib" select="if ($contrib-group/contrib[@contrib-type='author'][1]/@equal-contrib='yes') then true() else false()"/>
+        <xsl:choose>
+          <xsl:when test="$is-equal-contrib">
+            
+            <xsl:variable name="equal-contrib-rid" select="$contrib-group/contrib[@contrib-type='author'][1]/xref[starts-with(@rid,'equal-contrib')]/@rid"/>
+            <xsl:variable name="first-authors" select="$contrib-group/contrib[@contrib-type='author' and @equal-contrib='yes' and xref[@rid=$equal-contrib-rid] and not(preceding-sibling::contrib[not(xref[@rid=$equal-contrib-rid])])]"/>
+            <xsl:choose>
+              
+              <xsl:when test="$author-count = 3 and count($first-authors) = 3">
+                <xsl:value-of select="concat(e:get-surname($contrib-group/contrib[@contrib-type='author'][1]),                   ', ',                   e:get-surname($contrib-group/contrib[@contrib-type='author'][2]),                   ' and ',                   e:get-surname($contrib-group/contrib[@contrib-type='author'][3]))"/>
+              </xsl:when>
+              
+              <xsl:when test="count($first-authors) gt 3">
+                <xsl:variable name="first-auth-string" select="string-join(for $auth in $contrib-group/contrib[@contrib-type='author'][position() lt 4] return e:get-surname($auth),', ')"/>
+                <xsl:value-of select="concat($first-auth-string,' et al')"/>
+              </xsl:when>
+              
+              <xsl:otherwise>
+                <xsl:variable name="first-auth-string" select="string-join(for $auth in $first-authors return e:get-surname($auth),', ')"/>
+                <xsl:value-of select="concat($first-auth-string,' et al')"/>
+              </xsl:otherwise>
+            </xsl:choose>
+          </xsl:when>
+          
+          <xsl:otherwise>
+            <xsl:value-of select="concat(e:get-surname($contrib-group/contrib[@contrib-type='author'][1]),' et al')"/>
+          </xsl:otherwise>
+        </xsl:choose>
+      </xsl:otherwise>
+    </xsl:choose>
+  </xsl:function>
+  <xsl:function name="e:get-surname" as="text()">
+    <xsl:param name="contrib"/>
+    <xsl:choose>
+      <xsl:when test="$contrib/collab">
+        <xsl:value-of select="$contrib/collab[1]/text()[1]"/>
+      </xsl:when>
+      <xsl:otherwise>
+        <xsl:value-of select="$contrib//name[1]/surname[1]"/>
+      </xsl:otherwise>
+    </xsl:choose>
+  </xsl:function>
+  <xsl:function name="e:insight-box" as="element()">
+    <xsl:param name="box" as="xs:string"/>
+    <xsl:param name="cite-text" as="xs:string"/>
+    <xsl:variable name="box-text" select="substring-after(substring-after($box,'article'),' ')"/> 
+    
+    <xsl:element name="list">
+      <xsl:for-each select="tokenize($cite-text,'\p{Zs}')">
+        <xsl:choose>
+          <xsl:when test="contains($box-text,.)"/>
+          <xsl:otherwise>
+            <xsl:element name="item">
+              <xsl:attribute name="type">cite</xsl:attribute>
+              <xsl:value-of select="."/>
+            </xsl:element>
+          </xsl:otherwise>
+        </xsl:choose>
+      </xsl:for-each>
+      <xsl:for-each select="tokenize($box-text,'\p{Zs}')">
+        <xsl:choose>
+          <xsl:when test="contains($cite-text,.)"/>
+          <xsl:otherwise>
+            <xsl:element name="item">
+              <xsl:attribute name="type">box</xsl:attribute>
+              <xsl:value-of select="."/>
+            </xsl:element>
+          </xsl:otherwise>
+        </xsl:choose>
+      </xsl:for-each>
+    </xsl:element>
+  </xsl:function>
+  <let name="latin-regex" value="'in\p{Zs}+vitro|ex\p{Zs}+vitro|in\p{Zs}+vivo|ex\p{Zs}+vivo|a\p{Zs}+priori|a\p{Zs}+posteriori|de\p{Zs}+novo|in\p{Zs}+utero|in\p{Zs}+natura|in\p{Zs}+situ|in\p{Zs}+planta|in\p{Zs}+cellulo|rete\p{Zs}+mirabile|nomen\p{Zs}+novum| sensu |ad\p{Zs}+libitum|in\p{Zs}+ovo'"/>
+  <xsl:function name="e:get-latin-terms" as="element()">
+    <xsl:param name="article" as="element()"/>
+    <xsl:param name="regex" as="xs:string"/>
+    
+    <xsl:variable name="roman-text" select="lower-case(       string-join(for $x in $article/*[local-name() = 'body' or local-name() = 'back']//*       return       if ($x/ancestor-or-self::sec[@sec-type='additional-information']) then ()       else if ($x/ancestor-or-self::ref-list) then ()       else if ($x/local-name() = 'italic') then ()       else $x/text(),' '))"/>
+    <xsl:variable name="italic-text" select="lower-case(string-join($article//*:italic[not(ancestor::ref-list) and not(ancestor::sec[@sec-type='additional-information'])],' '))"/>
+    
+    
+    <xsl:element name="result">
+      <xsl:choose>
+        <xsl:when test="matches($roman-text,$regex)">
+          <xsl:element name="list">
+            <xsl:attribute name="list-type">roman</xsl:attribute>
+            <xsl:for-each select="tokenize($regex,'\|')">
+              <xsl:variable name="display" select="replace(replace(.,'\\p\{Zs\}\+',' '),'^ | $','')"/>
+              <xsl:element name="match">
+                <xsl:attribute name="count">
+                  <xsl:value-of select="count(tokenize($roman-text,.)) - 1"/>
+                </xsl:attribute>
+                <xsl:value-of select="$display"/>
+              </xsl:element>
+            </xsl:for-each>
+          </xsl:element>
+        </xsl:when>
+        <xsl:otherwise>
+          <xsl:element name="list">
+            <xsl:attribute name="list-type">roman</xsl:attribute>
+          </xsl:element>
+        </xsl:otherwise>
+      </xsl:choose>
+      <xsl:choose>
+        <xsl:when test="matches($italic-text,$regex)">
+          <xsl:element name="list">
+            <xsl:attribute name="list-type">italic</xsl:attribute>
+            <xsl:for-each select="tokenize($regex,'\|')">
+              <xsl:variable name="display" select="replace(.,'\\p\{Zs\}\+',' ')"/>
+              <xsl:element name="match">
+                <xsl:attribute name="count">
+                  <xsl:value-of select="count(tokenize($italic-text,.)) - 1"/>
+                </xsl:attribute>
+                <xsl:value-of select="$display"/>
+              </xsl:element>
+            </xsl:for-each>
+          </xsl:element>
+        </xsl:when>
+        <xsl:otherwise>
+          <xsl:element name="list">
+            <xsl:attribute name="list-type">italic</xsl:attribute>
+          </xsl:element>
+        </xsl:otherwise>
+      </xsl:choose>
+    </xsl:element>
+  </xsl:function>
+  <xsl:function name="e:print-latin-terms" as="xs:string">
+    <xsl:param name="list" as="element()"/>
+    <xsl:value-of select="string-join(       for $term in $list//*:match[@count != '0']        return if (number($term/@count) gt 1) then concat($term/@count,' instances of ',$term)       else concat($term/@count,' instance of ',$term)       ,', ')"/>
+  </xsl:function>
+  <xsl:function name="e:list-panels">
+    <xsl:param name="caption" as="xs:string"/>
+    <xsl:element name="list">
+      <xsl:for-each select="tokenize($caption,'\.\p{Zs}+')">
+        <xsl:if test="matches(.,'^[B-K]\p{P}?[A-K]?\.?\p{Zs}+')">
+          <xsl:element name="item">
+            <xsl:attribute name="token">
+              <xsl:value-of select="substring-before(.,' ')"/>
+            </xsl:attribute>
+            <xsl:value-of select="."/>
+          </xsl:element>
+        </xsl:if>
+      </xsl:for-each>
+    </xsl:element>
+  </xsl:function>
+  <xsl:function name="e:get-weekday" as="xs:integer?">
+    <xsl:param name="date" as="xs:anyAtomicType?"/>
+    <xsl:sequence select="       if (empty($date)) then ()       else xs:integer((xs:date($date) - xs:date('1901-01-06')) div xs:dayTimeDuration('P1D')) mod 7       "/>
+  </xsl:function>
+  <xsl:function name="e:line-count" as="xs:integer">
+    <xsl:param name="arg" as="xs:string?"/>
+    
+    <xsl:sequence select="count(tokenize($arg,'(\r\n?|\n\r?)'))"/>
+    
+  </xsl:function>
+  <pattern id="article-metadata">
+    <rule context="pub-date" id="pub-date-tests">
+      <let name="allowed-attributes" value="('publication-format','date-type','iso-8601-date')"/>
+      <report test="@date-type and @date-type!='publication'" role="error" id="pub-date-test-4">pub-date has the attribute date-type, but the value is "<value-of select="@date-type"/>". The only permitted value is "publication".</report>
+    </rule>
+  </pattern>
+  <pattern id="root-pattern">
+    <rule context="root" id="root-rule">
+      <assert test="descendant::pub-date" role="error" id="pub-date-tests-xspec-assert">pub-date must be present.</assert>
+    </rule>
+  </pattern>
+</schema>
\ No newline at end of file
diff --git a/test/tests/gen/pub-date-tests/pub-date-test-5/fail.xml b/test/tests/gen/pub-date-tests/pub-date-test-5/fail.xml
new file mode 100644
index 0000000000..50ec236ba7
--- /dev/null
+++ b/test/tests/gen/pub-date-tests/pub-date-test-5/fail.xml
@@ -0,0 +1,18 @@
+<?oxygen SCHSchema="pub-date-test-5.sch"?>
+<!--Context: pub-date
+Test: report    preceding-sibling::pub-date
+Message: There can only be one pub-date in article-meta. But this pub-date has a preceding one. -->
+<root xmlns:ali="http://www.niso.org/schemas/ali/1.0/" xmlns:mml="http://www.w3.org/1998/Math/MathML" xmlns:xlink="http://www.w3.org/1999/xlink">
+    <article>
+        <article-meta>
+            <pub-date publication-format="electronic" date-type="publication">
+                <day>22</day>
+                <month>10</month>
+                <year>2023</year>
+            </pub-date>
+            <pub-date>
+            <era>What am I doing here??</era>
+            </pub-date>
+        </article-meta>
+    </article>
+</root>
\ No newline at end of file
diff --git a/test/tests/gen/pub-date-tests/pub-date-test-5/pass.xml b/test/tests/gen/pub-date-tests/pub-date-test-5/pass.xml
new file mode 100644
index 0000000000..f3f26ab111
--- /dev/null
+++ b/test/tests/gen/pub-date-tests/pub-date-test-5/pass.xml
@@ -0,0 +1,15 @@
+<?oxygen SCHSchema="pub-date-test-5.sch"?>
+<!--Context: pub-date
+Test: report    preceding-sibling::pub-date
+Message: There can only be one pub-date in article-meta. But this pub-date has a preceding one. -->
+<root xmlns:ali="http://www.niso.org/schemas/ali/1.0/" xmlns:mml="http://www.w3.org/1998/Math/MathML" xmlns:xlink="http://www.w3.org/1999/xlink">
+    <article>
+        <article-meta>
+            <pub-date publication-format="electronic" date-type="publication">
+                <day>22</day>
+                <month>10</month>
+                <year>2023</year>
+            </pub-date>
+        </article-meta>
+    </article>
+</root>
\ No newline at end of file
diff --git a/test/tests/gen/pub-date-tests/pub-date-test-5/pub-date-test-5.sch b/test/tests/gen/pub-date-tests/pub-date-test-5/pub-date-test-5.sch
new file mode 100644
index 0000000000..5233854af3
--- /dev/null
+++ b/test/tests/gen/pub-date-tests/pub-date-test-5/pub-date-test-5.sch
@@ -0,0 +1,1303 @@
+<schema xmlns="http://purl.oclc.org/dsdl/schematron" xmlns:xlink="http://www.w3.org/1999/xlink" xmlns:xsl="http://www.w3.org/1999/XSL/Transform" xmlns:java="http://www.java.com/" xmlns:file="java.io.File" xmlns:ali="http://www.niso.org/schemas/ali/1.0/" xmlns:mml="http://www.w3.org/1998/Math/MathML" queryBinding="xslt2">
+  <title>eLife Schematron</title>
+  <ns uri="http://www.niso.org/schemas/ali/1.0/" prefix="ali"/>
+  <ns uri="http://www.w3.org/XML/1998/namespace" prefix="xml"/>
+  <ns uri="http://www.w3.org/1999/xlink" prefix="xlink"/>
+  <ns uri="http://www.w3.org/2001/XInclude" prefix="xi"/>
+  <ns uri="http://www.w3.org/1998/Math/MathML" prefix="mml"/>
+  <ns uri="http://saxon.sf.net/" prefix="saxon"/>
+  <ns uri="http://purl.org/dc/terms/" prefix="dc"/>
+  <ns uri="http://www.w3.org/2001/XMLSchema" prefix="xs"/>
+  <ns uri="https://elifesciences.org/namespace" prefix="e"/>
+  <ns uri="java.io.File" prefix="file"/>
+  <ns uri="http://www.java.com/" prefix="java"/>
+  <let name="features-subj" value="('Feature Article', 'Insight', 'Editorial')"/>
+  <let name="features-article-types" value="('article-commentary','editorial','discussion')"/>
+  <let name="research-subj" value="('Research Article', 'Short Report', 'Tools and Resources', 'Research Advance', 'Registered Report', 'Replication Study', 'Research Communication', 'Correction', 'Retraction', 'Scientific Correspondence', 'Review Article')"/>
+  <let name="notice-article-types" value="('correction','retraction','expression-of-concern')"/>
+  <let name="notice-display-types" value="('Correction','Retraction','Expression of Concern')"/>
+  <let name="allowed-article-types" value="('research-article','review-article',$features-article-types, $notice-article-types)"/>
+  <let name="allowed-disp-subj" value="($research-subj, $features-subj)"/>
+  <let name="MSAs" value="('Biochemistry and Chemical Biology', 'Cancer Biology', 'Cell Biology', 'Chromosomes and Gene Expression', 'Computational and Systems Biology', 'Developmental Biology', 'Ecology', 'Epidemiology and Global Health', 'Evolutionary Biology', 'Genetics and Genomics', 'Medicine', 'Immunology and Inflammation', 'Microbiology and Infectious Disease', 'Neuroscience', 'Physics of Living Systems', 'Plant Biology', 'Stem Cells and Regenerative Medicine', 'Structural Biology and Molecular Biophysics')"/>
+  <let name="funders" value="'../../../../../src/funders.xml'"/>
+  <let name="wellcome-fundref-ids" value="('http://dx.doi.org/10.13039/100010269','http://dx.doi.org/10.13039/100004440')"/>
+  <xsl:function name="e:is-prc" as="xs:boolean">
+    <xsl:param name="elem" as="node()"/>
+    <xsl:choose>
+      <xsl:when test="$elem/name()='article'">
+        <xsl:value-of select="e:is-prc-helper($elem)"/>
+      </xsl:when>
+      <xsl:otherwise>
+        <xsl:value-of select="e:is-prc-helper($elem/ancestor::article[1])"/>
+      </xsl:otherwise>
+    </xsl:choose>
+  </xsl:function>
+  <xsl:function name="e:is-prc-helper" as="xs:boolean">
+    <xsl:param name="article" as="node()"/>
+    <xsl:choose>
+      <xsl:when test="$article//article-meta/custom-meta-group/custom-meta[meta-name='publishing-route']/meta-value='prc'">
+        <xsl:value-of select="true()"/>
+      </xsl:when>
+      <xsl:otherwise>
+        <xsl:value-of select="false()"/>
+      </xsl:otherwise>
+    </xsl:choose>
+  </xsl:function>
+  <xsl:function name="e:get-version" as="xs:string">
+    <xsl:param name="elem" as="node()"/>
+    <xsl:choose>
+      <xsl:when test="$elem/name()='article'">
+        <xsl:value-of select="e:get-version-helper($elem)"/>
+      </xsl:when>
+      <xsl:otherwise>
+        <xsl:value-of select="e:get-version-helper($elem/ancestor::article[1])"/>
+      </xsl:otherwise>
+    </xsl:choose>
+  </xsl:function>
+  <xsl:function name="e:get-version-helper" as="xs:string">
+    <xsl:param name="article" as="node()"/>
+    <xsl:choose>
+      <xsl:when test="$article//article-meta/custom-meta-group/custom-meta[meta-name='schema-version']/meta-value">
+        <xsl:value-of select="$article//article-meta/custom-meta-group/custom-meta[meta-name='schema-version']/meta-value"/>
+      </xsl:when>
+      <xsl:otherwise>
+        <xsl:value-of select="'1'"/>
+      </xsl:otherwise>
+    </xsl:choose>
+  </xsl:function>
+  <xsl:function name="e:titleCaseToken" as="xs:string">
+    <xsl:param name="s" as="xs:string"/>
+    <xsl:choose>
+      <xsl:when test="contains($s,'-')">
+        <xsl:value-of select="concat(           upper-case(substring(substring-before($s,'-'), 1, 1)),           lower-case(substring(substring-before($s,'-'),2)),           '-',           upper-case(substring(substring-after($s,'-'), 1, 1)),           lower-case(substring(substring-after($s,'-'),2)))"/>
+      </xsl:when>
+      <xsl:when test="lower-case($s)='elife'">
+        <xsl:value-of select="'eLife'"/>
+      </xsl:when>
+      <xsl:when test="lower-case($s)=('and','or','the','an','of','in','as','at','by','for','a','to','up','but','yet')">
+        <xsl:value-of select="lower-case($s)"/>
+      </xsl:when>
+      <xsl:when test="matches(lower-case($s),'^rna$|^dna$|^mri$|^hiv$|^tor$|^aids$|^covid-19$|^covid$')">
+        <xsl:value-of select="upper-case($s)"/>
+      </xsl:when>
+      <xsl:when test="matches(lower-case($s),'[1-4]d')">
+        <xsl:value-of select="upper-case($s)"/>
+      </xsl:when>
+      <xsl:otherwise>
+        <xsl:value-of select="concat(upper-case(substring($s, 1, 1)), lower-case(substring($s, 2)))"/>
+      </xsl:otherwise>
+    </xsl:choose>
+  </xsl:function>
+  <xsl:function name="e:titleCase" as="xs:string">
+    <xsl:param name="s" as="xs:string"/>
+    <xsl:choose>
+      
+      <xsl:when test="lower-case($s)='protein kinase a'">
+        <xsl:value-of select="'Protein Kinase A'"/>
+      </xsl:when>
+      <xsl:when test="contains($s,' ')">
+        <xsl:variable name="token1" select="substring-before($s,' ')"/>
+        <xsl:variable name="token2" select="substring-after($s,$token1)"/>
+        <xsl:choose>
+          <xsl:when test="lower-case($token1)='elife'">
+            <xsl:value-of select="concat('eLife',               ' ',               string-join(for $x in tokenize(substring-after($token2,' '),'\p{Zs}') return e:titleCaseToken($x),' ')               )"/>
+          </xsl:when>
+          <xsl:when test="matches(lower-case($token1),'^rna$|^dna$|^mri$|^hiv$|^tor$|^aids$|^covid-19$|^covid$')">
+            <xsl:value-of select="concat(upper-case($token1),               ' ',               string-join(for $x in tokenize(substring-after($token2,' '),'\p{Zs}') return e:titleCaseToken($x),' ')               )"/>
+          </xsl:when>
+          <xsl:when test="matches(lower-case($token1),'[1-4]d')">
+            <xsl:value-of select="concat(upper-case($token1),               ' ',               string-join(for $x in tokenize(substring-after($token2,' '),'\p{Zs}') return e:titleCaseToken($x),' ')               )"/>
+          </xsl:when>
+          <xsl:when test="contains($token1,'-')">
+            <xsl:value-of select="string-join(for $x in tokenize($s,'\p{Zs}') return e:titleCaseToken($x),' ')"/>
+          </xsl:when>
+          <xsl:otherwise>
+            <xsl:value-of select="concat(               concat(upper-case(substring($token1, 1, 1)), lower-case(substring($token1, 2))),               ' ',               string-join(for $x in tokenize(substring-after($token2,' '),'\p{Zs}') return e:titleCaseToken($x),' ')               )"/>
+          </xsl:otherwise>
+        </xsl:choose>
+      </xsl:when>
+      <xsl:when test="lower-case($s)='elife'">
+        <xsl:value-of select="'eLife'"/>
+      </xsl:when>
+      <xsl:when test="lower-case($s)=('and','or','the','an','of')">
+        <xsl:value-of select="lower-case($s)"/>
+      </xsl:when>
+      <xsl:when test="matches(lower-case($s),'^rna$|^dna$|^mri$|^hiv$|^tor$|^aids$|^covid-19$|^covid$')">
+        <xsl:value-of select="upper-case($s)"/>
+      </xsl:when>
+      <xsl:when test="matches(lower-case($s),'[1-4]d')">
+        <xsl:value-of select="upper-case($s)"/>
+      </xsl:when>
+      <xsl:otherwise>
+        <xsl:value-of select="e:titleCaseToken($s)"/>
+      </xsl:otherwise>
+    </xsl:choose>
+  </xsl:function>
+  <xsl:function name="e:article-type2title" as="xs:string">
+    <xsl:param name="s" as="xs:string"/>
+    <xsl:choose>
+      <xsl:when test="$s = 'Replication Study'">
+        <xsl:value-of select="'Replication Study:'"/>
+      </xsl:when>
+      <xsl:when test="$s = 'Registered Report'">
+        <xsl:value-of select="'Registered report:'"/>
+      </xsl:when>
+      <xsl:when test="$s = 'Correction'">
+        <xsl:value-of select="'Correction:'"/>
+      </xsl:when>
+      <xsl:when test="$s = 'Retraction'">
+        <xsl:value-of select="'Retraction:'"/>
+      </xsl:when>
+      <xsl:when test="$s = 'Expression of Concern'">
+        <xsl:value-of select="'Expression of Concern:'"/>
+      </xsl:when>
+      <xsl:otherwise>
+        <xsl:value-of select="'undefined'"/>
+      </xsl:otherwise>
+    </xsl:choose>
+  </xsl:function>
+  <xsl:function name="e:sec-type2title" as="xs:string">
+    <xsl:param name="s" as="xs:string"/>
+    <xsl:choose>
+      <xsl:when test="$s = 'intro'">
+        <xsl:value-of select="'Introduction'"/>
+      </xsl:when>
+      <xsl:when test="$s = 'results'">
+        <xsl:value-of select="'Results'"/>
+      </xsl:when>
+      <xsl:when test="$s = 'discussion'">
+        <xsl:value-of select="'Discussion'"/>
+      </xsl:when>
+      <xsl:when test="$s = 'materials|methods'">
+        <xsl:value-of select="'Materials and methods'"/>
+      </xsl:when>
+      <xsl:when test="$s = 'results|discussion'">
+        <xsl:value-of select="'Results and discussion'"/>
+      </xsl:when>
+      <xsl:when test="$s = 'methods'">
+        <xsl:value-of select="'Methods'"/>
+      </xsl:when>
+      <xsl:when test="$s = 'model'">
+        <xsl:value-of select="'Model'"/>
+      </xsl:when>
+      <xsl:when test="$s = 'additional-information'">
+        <xsl:value-of select="'Additional information'"/>
+      </xsl:when>
+      <xsl:when test="$s = 'supplementary-material'">
+        <xsl:value-of select="'Additional files'"/>
+      </xsl:when>
+      <xsl:when test="$s = 'data-availability'">
+        <xsl:value-of select="'Data availability'"/>
+      </xsl:when>
+      <xsl:otherwise>
+        <xsl:value-of select="'undefined'"/>
+      </xsl:otherwise>
+    </xsl:choose>
+  </xsl:function>
+  <xsl:function name="e:fig-id-type" as="xs:string">
+    <xsl:param name="s" as="xs:string"/>
+    <xsl:choose>
+      <xsl:when test="matches($s,'^fig[0-9]{1,3}$')">
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+      <xsl:when test="matches($s,'^fig[0-9]{1,3}s[0-9]{1,3}$')">
+        <xsl:value-of select="'Figure supplement'"/>
+      </xsl:when>
+      <xsl:when test="matches($s,'^box[0-9]{1,3}fig[0-9]{1,3}$')">
+        <xsl:value-of select="'Box figure'"/>
+      </xsl:when>
+      <xsl:when test="matches($s,'^app[0-9]{1,3}fig[0-9]{1,3}$')">
+        <xsl:value-of select="'Appendix figure'"/>
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+      </xsl:when>
+      <xsl:when test="matches($s,'^C[0-9]{1,3}$|^chem[0-9]{1,3}$')">
+        <xsl:value-of select="'Chemical structure'"/>
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+      <xsl:when test="matches($s,'^app[0-9]{1,3}C[0-9]{1,3}$|^app[0-9]{1,3}chem[0-9]{1,3}$')">
+        <xsl:value-of select="'Appendix chemical structure'"/>
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+      <xsl:otherwise>
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+      </xsl:otherwise>
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+    <xsl:value-of select="replace(replace(replace(translate(normalize-unicode($string,'NFD'),'ƀȼđɇǥħɨıɉꝁłøɍŧɏƶ','bcdeghiijklortyz'),'[\p{M}’]',''),'æ','ae'),'ß','ss')"/>
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+        <xsl:value-of select="concat(' ',$ref/element-citation[1]/year[1])"/>
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+    <xsl:param name="ref"/>
+    <xsl:choose>
+      <xsl:when test="$ref/element-citation[1]/year and count($ref/element-citation[1]/person-group[1]/*) = 2">
+        <xsl:value-of select="concat(           e:get-collab-or-surname($ref/element-citation[1]/person-group[1]/*[1]),           ' ',           e:get-collab-or-surname($ref/element-citation[1]/person-group[1]/*[2]),           ' ',           $ref/element-citation[1]/year[1])"/>
+      </xsl:when>
+      <xsl:when test="$ref/element-citation/person-group[1]/* and $ref/element-citation[1]/year">
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+        <xsl:value-of select="concat(           e:get-collab-or-surname($ref/element-citation[1]/person-group[1]/*[1]),           ' 9999 ')"/>
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+      <xsl:when test="$ref/element-citation/year">
+        <xsl:value-of select="concat(' ',$ref/element-citation[1]/year[1])"/>
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+      <xsl:otherwise>
+        <xsl:value-of select="'zzzzz 9999'"/>
+      </xsl:otherwise>
+    </xsl:choose>
+  </xsl:function>
+  <xsl:function name="e:get-collab-or-surname" as="xs:string?">
+    <xsl:param name="collab-or-name"/>
+    <xsl:choose>
+      <xsl:when test="$collab-or-name/name()='collab'">
+        <xsl:value-of select="e:stripDiacritics(replace(lower-case($collab-or-name),'\.',''))"/>
+      </xsl:when>
+      <xsl:when test="$collab-or-name/surname">
+        <xsl:value-of select="e:stripDiacritics(lower-case($collab-or-name/surname[1]))"/>
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+      <xsl:otherwise/>
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+  </xsl:function>
+  <xsl:function name="e:cite-name-text" as="xs:string">
+    <xsl:param name="person-group"/>
+    <xsl:choose>
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+        <xsl:value-of select="$person-group/collab"/>
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+      </xsl:when>
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+        <xsl:value-of select="concat($person-group/name/surname[1],' and ',$person-group/collab)"/>
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+      <xsl:when test="(count($person-group/*) = 2) and (count($person-group/name) = 2)">
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+      <xsl:when test="(count($person-group/*) = 2) and (count($person-group/collab) = 2)">
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+      <xsl:when test="(count($person-group/*) ge 2) and $person-group/*[1]/local-name() = 'collab'">
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+      <xsl:when test="(count($person-group/*) ge 2) and $person-group/*[1]/local-name() = 'name'">
+        <xsl:value-of select="concat($person-group/name[1]/surname[1], ' et al.')"/>
+      </xsl:when>
+      <xsl:otherwise>
+        <xsl:value-of select="'undetermined'"/>
+      </xsl:otherwise>
+    </xsl:choose>
+  </xsl:function>
+  <xsl:function name="e:citation-format1" as="xs:string">
+    <xsl:param name="element-citation"/>
+    <xsl:choose>
+      <xsl:when test="$element-citation/person-group and $element-citation//year">
+        <xsl:value-of select="concat(e:cite-name-text($element-citation/person-group[1]),', ',$element-citation/descendant::year[1])"/>
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+        <xsl:value-of select="concat('et al., ',$element-citation/descendant::year[1])"/>
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+      <xsl:otherwise>
+        <xsl:value-of select="', '"/>
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+    </xsl:choose>
+  </xsl:function>
+  <xsl:function name="e:citation-format2" as="xs:string">
+    <xsl:param name="element-citation"/>
+    <xsl:choose>
+      <xsl:when test="$element-citation/person-group and $element-citation//year">
+        <xsl:value-of select="concat(e:cite-name-text($element-citation/person-group[1]),' (',$element-citation/descendant::year[1],')')"/>
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+        <xsl:value-of select="concat(e:cite-name-text($element-citation/person-group[1]),' ()')"/>
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+      <xsl:when test="not($element-citation/person-group) and $element-citation//year">
+        <xsl:value-of select="concat('et al. (',$element-citation/descendant::year[1],')')"/>
+      </xsl:when>
+      <xsl:otherwise>
+        <xsl:value-of select="', '"/>
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+    </xsl:choose>
+  </xsl:function>
+  <xsl:function name="e:ref-cite-list">
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+    <xsl:element name="list">
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+        <xsl:variable name="cite" select="e:citation-format1(./element-citation[1])"/>
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+          <xsl:attribute name="id">
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+          <xsl:value-of select="$cite"/>
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+    <xsl:element name="list">
+    <xsl:for-each select="$cite-list//*:item">
+      <xsl:variable name="cite" select="./string()"/>
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+          <xsl:value-of select="$cite"/>
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+        <xsl:when test="not(matches($cite,'[A-Za-z]$')) and ./following::*:item/@no-suffix/string() = $cite">
+          <xsl:element name="item">
+            <xsl:attribute name="id">
+              <xsl:value-of select="./@id"/>
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+          <xsl:value-of select="$cite"/>
+          </xsl:element>
+        </xsl:when>
+        <xsl:otherwise/>
+      </xsl:choose>
+    </xsl:for-each>
+    </xsl:element>
+  </xsl:function>
+  <xsl:function name="e:get-name" as="xs:string">
+    <xsl:param name="name"/>
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+      <xsl:when test="$name/given-names[1] and $name/surname[1] and $name/suffix[1]">
+        <xsl:value-of select="concat($name/given-names[1],' ',$name/surname[1],' ',$name/suffix[1])"/>
+      </xsl:when>
+      <xsl:when test="not($name/given-names[1]) and $name/surname[1] and $name/suffix[1]">
+        <xsl:value-of select="concat($name/surname[1],' ',$name/suffix[1])"/>
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+      <xsl:otherwise>
+        
+        <xsl:value-of select="'No elements present'"/>
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+  <xsl:function name="e:get-collab">
+    <xsl:param name="collab"/>
+    <xsl:for-each select="$collab/(*|text())">
+      <xsl:choose>
+        <xsl:when test="./name()='contrib-group'"/>
+        <xsl:otherwise>
+          <xsl:value-of select="."/>
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+    <xsl:choose>
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+        <xsl:variable name="d1" select="number(substring($s,1,1)) * 10"/>
+        <xsl:variable name="d2" select="number(substring($s,2,1)) * 9"/>
+        <xsl:variable name="d3" select="number(substring($s,3,1)) * 8"/>
+        <xsl:variable name="d4" select="number(substring($s,4,1)) * 7"/>
+        <xsl:variable name="d5" select="number(substring($s,5,1)) * 6"/>
+        <xsl:variable name="d6" select="number(substring($s,6,1)) * 5"/>
+        <xsl:variable name="d7" select="number(substring($s,7,1)) * 4"/>
+        <xsl:variable name="d8" select="number(substring($s,8,1)) * 3"/>
+        <xsl:variable name="d9" select="number(substring($s,9,1)) * 2"/>
+        <xsl:variable name="d10" select="number(substring($s,10,1)) * 1"/>
+        <xsl:value-of select="number($d1 + $d2 + $d3 + $d4 + $d5 + $d6 + $d7 + $d8 + $d9 + $d10) mod 11"/>
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+      <xsl:when test="string-length($s) = 13">
+        <xsl:variable name="d1" select="number(substring($s,1,1))"/>
+        <xsl:variable name="d2" select="number(substring($s,2,1)) * 3"/>
+        <xsl:variable name="d3" select="number(substring($s,3,1))"/>
+        <xsl:variable name="d4" select="number(substring($s,4,1)) * 3"/>
+        <xsl:variable name="d5" select="number(substring($s,5,1))"/>
+        <xsl:variable name="d6" select="number(substring($s,6,1)) * 3"/>
+        <xsl:variable name="d7" select="number(substring($s,7,1))"/>
+        <xsl:variable name="d8" select="number(substring($s,8,1)) * 3"/>
+        <xsl:variable name="d9" select="number(substring($s,9,1))"/>
+        <xsl:variable name="d10" select="number(substring($s,10,1)) * 3"/>
+        <xsl:variable name="d11" select="number(substring($s,11,1))"/>
+        <xsl:variable name="d12" select="number(substring($s,12,1)) * 3"/>
+        <xsl:variable name="d13" select="number(substring($s,13,1))"/>
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+      <xsl:otherwise>
+        <xsl:value-of select="number('1')"/>
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+  <xsl:function name="e:escape-for-regex" as="xs:string">
+    <xsl:param name="arg" as="xs:string?"/>
+    <xsl:sequence select="replace($arg,'(\.|\[|\]|\\|\||\-|\^|\$|\?|\*|\+|\{|\}|\(|\))','\\$1')"/>
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+  <xsl:function name="e:get-ordinal" as="xs:string">
+    <xsl:param name="value" as="xs:integer?"/>
+    <xsl:if test="translate(string($value), '0123456789', '') = '' and number($value) &gt; 0">
+      <xsl:variable name="mod100" select="$value mod 100"/>
+      <xsl:variable name="mod10" select="$value mod 10"/>
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+        <xsl:when test="$mod10 = 1">
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+        <xsl:when test="$mod10 = 2">
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+        <xsl:when test="$mod10 = 3">
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+        <xsl:otherwise>
+          <xsl:value-of select="concat($value,'th')"/>
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+    </xsl:if>
+  </xsl:function>
+  <let name="org-regex" value="'b\.\p{Zs}?subtilis|bacillus\p{Zs}?subtilis|d\.\p{Zs}?melanogaster|drosophila\p{Zs}?melanogaster|e\.\p{Zs}?coli|escherichia\p{Zs}?coli|s\.\p{Zs}?pombe|schizosaccharomyces\p{Zs}?pombe|s\.\p{Zs}?cerevisiae|saccharomyces\p{Zs}?cerevisiae|c\.\p{Zs}?elegans|caenorhabditis\p{Zs}?elegans|a\.\p{Zs}?thaliana|arabidopsis\p{Zs}?thaliana|m\.\p{Zs}?thermophila|myceliophthora\p{Zs}?thermophila|dictyostelium|p\.\p{Zs}?falciparum|plasmodium\p{Zs}?falciparum|s\.\p{Zs}?enterica|salmonella\p{Zs}?enterica|s\.\p{Zs}?pyogenes|streptococcus\p{Zs}?pyogenes|p\.\p{Zs}?dumerilii|platynereis\p{Zs}?dumerilii|p\.\p{Zs}?cynocephalus|papio\p{Zs}?cynocephalus|o\.\p{Zs}?fasciatus|oncopeltus\p{Zs}?fasciatus|n\.\p{Zs}?crassa|neurospora\p{Zs}?crassa|c\.\p{Zs}?intestinalis|ciona\p{Zs}?intestinalis|e\.\p{Zs}?cuniculi|encephalitozoon\p{Zs}?cuniculi|h\.\p{Zs}?salinarum|halobacterium\p{Zs}?salinarum|s\.\p{Zs}?solfataricus|sulfolobus\p{Zs}?solfataricus|s\.\p{Zs}?mediterranea|schmidtea\p{Zs}?mediterranea|s\.\p{Zs}?rosetta|salpingoeca\p{Zs}?rosetta|n\.\p{Zs}?vectensis|nematostella\p{Zs}?vectensis|s\.\p{Zs}?aureus|staphylococcus\p{Zs}?aureus|v\.\p{Zs}?cholerae|vibrio\p{Zs}?cholerae|t\.\p{Zs}?thermophila|tetrahymena\p{Zs}?thermophila|c\.\p{Zs}?reinhardtii|chlamydomonas\p{Zs}?reinhardtii|n\.\p{Zs}?attenuata|nicotiana\p{Zs}?attenuata|e\.\p{Zs}?carotovora|erwinia\p{Zs}?carotovora|e\.\p{Zs}?faecalis|h\.\p{Zs}?sapiens|homo\p{Zs}?sapiens|c\.\p{Zs}?trachomatis|chlamydia\p{Zs}?trachomatis|enterococcus\p{Zs}?faecalis|x\.\p{Zs}?laevis|xenopus\p{Zs}?laevis|x\.\p{Zs}?tropicalis|xenopus\p{Zs}?tropicalis|m\.\p{Zs}?musculus|mus\p{Zs}?musculus|d\.\p{Zs}?immigrans|drosophila\p{Zs}?immigrans|d\.\p{Zs}?subobscura|drosophila\p{Zs}?subobscura|d\.\p{Zs}?affinis|drosophila\p{Zs}?affinis|d\.\p{Zs}?obscura|drosophila\p{Zs}?obscura|f\.\p{Zs}?tularensis|francisella\p{Zs}?tularensis|p\.\p{Zs}?plantaginis|podosphaera\p{Zs}?plantaginis|p\.\p{Zs}?lanceolata|plantago\p{Zs}?lanceolata|m\.\p{Zs}?trossulus|mytilus\p{Zs}?trossulus|m\.\p{Zs}?edulis|mytilus\p{Zs}?edulis|m\.\p{Zs}?chilensis|mytilus\p{Zs}?chilensis|u\.\p{Zs}?maydis|ustilago\p{Zs}?maydis|p\.\p{Zs}?knowlesi|plasmodium\p{Zs}?knowlesi|p\.\p{Zs}?aeruginosa|pseudomonas\p{Zs}?aeruginosa|t\.\p{Zs}?brucei|trypanosoma\p{Zs}?brucei|t\.\p{Zs}?gondii|toxoplasma\p{Zs}?gondii|d\.\p{Zs}?rerio|danio\p{Zs}?rerio|yimenosaurus|lesothosaurus\p{Zs}?diagnosticus|l\.\p{Zs}?diagnosticus|scelidosaurus\p{Zs}?harrisonii|s\.\p{Zs}?harrisonii|haya\p{Zs}?griva|h\.\p{Zs}?griva|polacanthus\p{Zs}?foxii|p\.\p{Zs}?foxii|scutellosaurus\p{Zs}?lawleri|s\.\p{Zs}?lawleri|saichania\p{Zs}?chulsanensis|s\.\p{Zs}?chulsanensis|gargoyleosaurus\p{Zs}?parkpinorum|g\.\p{Zs}?parkpinorum|europelta\p{Zs}?carbonensis|e\.\p{Zs}?carbonensis|stegosaurus\p{Zs}?stenops|s\.\p{Zs}?stenops|pinacosaurus\p{Zs}?grangeri|p\.\p{Zs}?grangeri|tatisaurus\p{Zs}?oehleri|t\.\p{Zs}?oehleri|hungarosaurus\p{Zs}?tormai|h\.\p{Zs}?tormai|bienosaurus\p{Zs}?lufengensis|b\.\p{Zs}?lufengensis|fabrosaurus\p{Zs}?australis|f\.\p{Zs}?australis|chinshakiangosaurus\p{Zs}?chunghoensis|c\.\p{Zs}?chunghoensis|euoplocephalus\p{Zs}?tutus|e\.\p{Zs}?tutus|drosophila|xenopus|salmonella|g\.\p{Zs}?beringei|gorilla\p{Zs}?beringei|m\.\p{Zs}?assamensis|macaca\p{Zs}?assamensis|m\.\p{Zs}?fuscata|macaca\p{Zs}?fuscata|m\.\p{Zs}?mulatta|macaca\p{Zs}?mulatta|m\.\p{Zs}?nemestrina|macaca\p{Zs}?nemestrina|m\.\p{Zs}?sphinx|mandrillus\p{Zs}?sphinx|p\.\p{Zs}?anubis|papio\p{Zs}?anubis|p\.\p{Zs}?hamadryas|papio\p{Zs}?hamadryas|p\.\p{Zs}?paniscus|pan\p{Zs}?paniscus|p\.\p{Zs}?troglodytes|pan\p{Zs}?troglodytes'"/>
+  <let name="sec-title-regex" value="string-join(     for $x in tokenize($org-regex,'\|')     return concat('^',$x,'$')     ,'|')"/>
+  <xsl:function name="e:org-conform" as="xs:string">
+  <xsl:param name="s" as="xs:string"/>
+  <xsl:choose>
+    <xsl:when test="matches($s,'b\.\p{Zs}?subtilis')">
+      <xsl:value-of select="'B. subtilis'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'bacillus\p{Zs}?subtilis')">
+      <xsl:value-of select="'Bacillus subtilis'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'d\.\p{Zs}?melanogaster')">
+      <xsl:value-of select="'D. melanogaster'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'drosophila\p{Zs}?melanogaster')">
+      <xsl:value-of select="'Drosophila melanogaster'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'e\.\p{Zs}?coli')">
+      <xsl:value-of select="'E. coli'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'escherichia\p{Zs}?coli')">
+      <xsl:value-of select="'Escherichia coli'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'s\.\p{Zs}?pombe')">
+      <xsl:value-of select="'S. pombe'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'schizosaccharomyces\p{Zs}?pombe')">
+      <xsl:value-of select="'Schizosaccharomyces pombe'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'s\.\p{Zs}?cerevisiae')">
+      <xsl:value-of select="'S. cerevisiae'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'saccharomyces\p{Zs}?cerevisiae')">
+      <xsl:value-of select="'Saccharomyces cerevisiae'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'c\.\p{Zs}?elegans')">
+      <xsl:value-of select="'C. elegans'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'caenorhabditis\p{Zs}?elegans')">
+      <xsl:value-of select="'Caenorhabditis elegans'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'a\.\p{Zs}?thaliana')">
+      <xsl:value-of select="'A. thaliana'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'arabidopsis\p{Zs}?thaliana')">
+      <xsl:value-of select="'Arabidopsis thaliana'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'m\.\p{Zs}?thermophila')">
+      <xsl:value-of select="'M. thermophila'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'myceliophthora\p{Zs}?thermophila')">
+      <xsl:value-of select="'Myceliophthora thermophila'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'dictyostelium')">
+      <xsl:value-of select="'Dictyostelium'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'p\.\p{Zs}?falciparum')">
+      <xsl:value-of select="'P. falciparum'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'plasmodium\p{Zs}?falciparum')">
+      <xsl:value-of select="'Plasmodium falciparum'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'s\.\p{Zs}?enterica')">
+      <xsl:value-of select="'S. enterica'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'salmonella\p{Zs}?enterica')">
+      <xsl:value-of select="'Salmonella enterica'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'s\.\p{Zs}?pyogenes')">
+      <xsl:value-of select="'S. pyogenes'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'streptococcus\p{Zs}?pyogenes')">
+      <xsl:value-of select="'Streptococcus pyogenes'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'p\.\p{Zs}?dumerilii')">
+      <xsl:value-of select="'P. dumerilii'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'platynereis\p{Zs}?dumerilii')">
+      <xsl:value-of select="'Platynereis dumerilii'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'p\.\p{Zs}?cynocephalus')">
+      <xsl:value-of select="'P. cynocephalus'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'papio\p{Zs}?cynocephalus')">
+      <xsl:value-of select="'Papio cynocephalus'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'o\.\p{Zs}?fasciatus')">
+      <xsl:value-of select="'O. fasciatus'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'oncopeltus\p{Zs}?fasciatus')">
+      <xsl:value-of select="'Oncopeltus fasciatus'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'n\.\p{Zs}?crassa')">
+      <xsl:value-of select="'N. crassa'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'neurospora\p{Zs}?crassa')">
+      <xsl:value-of select="'Neurospora crassa'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'c\.\p{Zs}?intestinalis')">
+      <xsl:value-of select="'C. intestinalis'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'ciona\p{Zs}?intestinalis')">
+      <xsl:value-of select="'Ciona intestinalis'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'e\.\p{Zs}?cuniculi')">
+      <xsl:value-of select="'E. cuniculi'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'encephalitozoon\p{Zs}?cuniculi')">
+      <xsl:value-of select="'Encephalitozoon cuniculi'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'h\.\p{Zs}?salinarum')">
+      <xsl:value-of select="'H. salinarum'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'halobacterium\p{Zs}?salinarum')">
+      <xsl:value-of select="'Halobacterium salinarum'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'s\.\p{Zs}?solfataricus')">
+      <xsl:value-of select="'S. solfataricus'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'sulfolobus\p{Zs}?solfataricus')">
+      <xsl:value-of select="'Sulfolobus solfataricus'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'s\.\p{Zs}?mediterranea')">
+      <xsl:value-of select="'S. mediterranea'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'schmidtea\p{Zs}?mediterranea')">
+      <xsl:value-of select="'Schmidtea mediterranea'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'s\.\p{Zs}?rosetta')">
+      <xsl:value-of select="'S. rosetta'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'salpingoeca\p{Zs}?rosetta')">
+      <xsl:value-of select="'Salpingoeca rosetta'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'n\.\p{Zs}?vectensis')">
+      <xsl:value-of select="'N. vectensis'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'nematostella\p{Zs}?vectensis')">
+      <xsl:value-of select="'Nematostella vectensis'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'s\.\p{Zs}?aureus')">
+      <xsl:value-of select="'S. aureus'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'staphylococcus\p{Zs}?aureus')">
+      <xsl:value-of select="'Staphylococcus aureus'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'v\.\p{Zs}?cholerae')">
+      <xsl:value-of select="'V. cholerae'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'vibrio\p{Zs}?cholerae')">
+      <xsl:value-of select="'Vibrio cholerae'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'t\.\p{Zs}?thermophila')">
+      <xsl:value-of select="'T. thermophila'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'tetrahymena\p{Zs}?thermophila')">
+      <xsl:value-of select="'Tetrahymena thermophila'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'c\.\p{Zs}?reinhardtii')">
+      <xsl:value-of select="'C. reinhardtii'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'chlamydomonas\p{Zs}?reinhardtii')">
+      <xsl:value-of select="'Chlamydomonas reinhardtii'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'n\.\p{Zs}?attenuata')">
+      <xsl:value-of select="'N. attenuata'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'nicotiana\p{Zs}?attenuata')">
+      <xsl:value-of select="'Nicotiana attenuata'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'e\.\p{Zs}?carotovora')">
+      <xsl:value-of select="'E. carotovora'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'erwinia\p{Zs}?carotovora')">
+      <xsl:value-of select="'Erwinia carotovora'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'e\.\p{Zs}?faecalis')">
+      <xsl:value-of select="'E. faecalis'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'h\.\p{Zs}?sapiens')">
+      <xsl:value-of select="'H. sapiens'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'homo\p{Zs}?sapiens')">
+      <xsl:value-of select="'Homo sapiens'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'c\.\p{Zs}?trachomatis')">
+      <xsl:value-of select="'C. trachomatis'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'chlamydia\p{Zs}?trachomatis')">
+      <xsl:value-of select="'Chlamydia trachomatis'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'enterococcus\p{Zs}?faecalis')">
+      <xsl:value-of select="'Enterococcus faecalis'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'x\.\p{Zs}?laevis')">
+      <xsl:value-of select="'X. laevis'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'xenopus\p{Zs}?laevis')">
+      <xsl:value-of select="'Xenopus laevis'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'x\.\p{Zs}?tropicalis')">
+      <xsl:value-of select="'X. tropicalis'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'xenopus\p{Zs}?tropicalis')">
+      <xsl:value-of select="'Xenopus tropicalis'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'m\.\p{Zs}?musculus')">
+      <xsl:value-of select="'M. musculus'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'mus\p{Zs}?musculus')">
+      <xsl:value-of select="'Mus musculus'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'d\.\p{Zs}?immigrans')">
+      <xsl:value-of select="'D. immigrans'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'drosophila\p{Zs}?immigrans')">
+      <xsl:value-of select="'Drosophila immigrans'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'d\.\p{Zs}?subobscura')">
+      <xsl:value-of select="'D. subobscura'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'drosophila\p{Zs}?subobscura')">
+      <xsl:value-of select="'Drosophila subobscura'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'d\.\p{Zs}?affinis')">
+      <xsl:value-of select="'D. affinis'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'drosophila\p{Zs}?affinis')">
+      <xsl:value-of select="'Drosophila affinis'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'d\.\p{Zs}?obscura')">
+      <xsl:value-of select="'D. obscura'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'drosophila\p{Zs}?obscura')">
+      <xsl:value-of select="'Drosophila obscura'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'f\.\p{Zs}?tularensis')">
+      <xsl:value-of select="'F. tularensis'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'francisella\p{Zs}?tularensis')">
+      <xsl:value-of select="'Francisella tularensis'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'p\.\p{Zs}?plantaginis')">
+      <xsl:value-of select="'P. plantaginis'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'podosphaera\p{Zs}?plantaginis')">
+      <xsl:value-of select="'Podosphaera plantaginis'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'p\.\p{Zs}?lanceolata')">
+      <xsl:value-of select="'P. lanceolata'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'plantago\p{Zs}?lanceolata')">
+      <xsl:value-of select="'Plantago lanceolata'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'m\.\p{Zs}?trossulus')">
+      <xsl:value-of select="'M. trossulus'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'mytilus\p{Zs}?trossulus')">
+      <xsl:value-of select="'Mytilus trossulus'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'m\.\p{Zs}?edulis')">
+      <xsl:value-of select="'M. edulis'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'mytilus\p{Zs}?edulis')">
+      <xsl:value-of select="'Mytilus edulis'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'m\.\p{Zs}?chilensis')">
+      <xsl:value-of select="'M. chilensis'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'mytilus\p{Zs}?chilensis')">
+      <xsl:value-of select="'Mytilus chilensis'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'u\.\p{Zs}?maydis')">
+      <xsl:value-of select="'U. maydis'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'ustilago\p{Zs}?maydis')">
+      <xsl:value-of select="'Ustilago maydis'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'p\.\p{Zs}?knowlesi')">
+      <xsl:value-of select="'P. knowlesi'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'plasmodium\p{Zs}?knowlesi')">
+      <xsl:value-of select="'Plasmodium knowlesi'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'p\.\p{Zs}?aeruginosa')">
+      <xsl:value-of select="'P. aeruginosa'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'pseudomonas\p{Zs}?aeruginosa')">
+      <xsl:value-of select="'Pseudomonas aeruginosa'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'t\.\p{Zs}?brucei')">
+      <xsl:value-of select="'T. brucei'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'trypanosoma\p{Zs}?brucei')">
+      <xsl:value-of select="'Trypanosoma brucei'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'caulobacter\p{Zs}?crescentus')">
+      <xsl:value-of select="'Caulobacter crescentus'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'c\.\p{Zs}?crescentus')">
+      <xsl:value-of select="'C. crescentus'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'agrobacterium\p{Zs}?tumefaciens')">
+      <xsl:value-of select="'Agrobacterium tumefaciens'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'a\.\p{Zs}?tumefaciens')">
+      <xsl:value-of select="'A. tumefaciens'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'t\.\p{Zs}?gondii')">
+      <xsl:value-of select="'T. gondii'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'toxoplasma\p{Zs}?gondii')">
+      <xsl:value-of select="'Toxoplasma gondii'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'d\.\p{Zs}?rerio')">
+      <xsl:value-of select="'D. rerio'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'danio\p{Zs}?rerio')">
+      <xsl:value-of select="'Danio rerio'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'drosophila')">
+      <xsl:value-of select="'Drosophila'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'yimenosaurus')">
+      <xsl:value-of select="'Yimenosaurus'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'lesothosaurus\p{Zs}?diagnosticus')">
+      <xsl:value-of select="'Lesothosaurus diagnosticus'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'l.\p{Zs}?diagnosticus')">
+      <xsl:value-of select="'L. diagnosticus'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'scelidosaurus\p{Zs}?harrisonii')">
+      <xsl:value-of select="'Scelidosaurus harrisonii'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'s.\p{Zs}?harrisonii')">
+      <xsl:value-of select="'S. harrisonii'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'haya\p{Zs}?griva')">
+      <xsl:value-of select="'Haya griva'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'h.\p{Zs}?griva')">
+      <xsl:value-of select="'H. griva'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'polacanthus\p{Zs}?foxii')">
+      <xsl:value-of select="'Polacanthus foxii'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'p.\p{Zs}?foxii')">
+      <xsl:value-of select="'P. foxii'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'scutellosaurus\p{Zs}?lawleri')">
+      <xsl:value-of select="'Scutellosaurus lawleri'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'s.\p{Zs}?lawleri')">
+      <xsl:value-of select="'S. lawleri'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'saichania\p{Zs}?chulsanensis')">
+      <xsl:value-of select="'Saichania chulsanensis'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'s.\p{Zs}?chulsanensis')">
+      <xsl:value-of select="'S. chulsanensis'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'gargoyleosaurus\p{Zs}?parkpinorum')">
+      <xsl:value-of select="'Gargoyleosaurus parkpinorum'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'g.\p{Zs}?parkpinorum')">
+      <xsl:value-of select="'G. parkpinorum'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'europelta\p{Zs}?carbonensis')">
+      <xsl:value-of select="'Europelta carbonensis'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'e.\p{Zs}?carbonensis')">
+      <xsl:value-of select="'E. carbonensis'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'stegosaurus\p{Zs}?stenops')">
+      <xsl:value-of select="'Stegosaurus stenops'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'s.\p{Zs}?stenops')">
+      <xsl:value-of select="'S. stenops'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'pinacosaurus\p{Zs}?grangeri')">
+      <xsl:value-of select="'Pinacosaurus grangeri'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'p.\p{Zs}?grangeri')">
+      <xsl:value-of select="'P. grangeri'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'tatisaurus\p{Zs}?oehleri')">
+      <xsl:value-of select="'Tatisaurus oehleri'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'t.\p{Zs}?oehleri')">
+      <xsl:value-of select="'T. oehleri'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'hungarosaurus\p{Zs}?tormai')">
+      <xsl:value-of select="'Hungarosaurus tormai'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'h.\p{Zs}?tormai')">
+      <xsl:value-of select="'H. tormai'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'lesothosaurus\p{Zs}?diagnosticus')">
+      <xsl:value-of select="'Lesothosaurus diagnosticus'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'l.\p{Zs}?diagnosticus')">
+      <xsl:value-of select="'L. diagnosticus'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'bienosaurus\p{Zs}?lufengensis')">
+      <xsl:value-of select="'Bienosaurus lufengensis'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'b.\p{Zs}?lufengensis')">
+      <xsl:value-of select="'B. lufengensis'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'fabrosaurus\p{Zs}?australis')">
+      <xsl:value-of select="'Fabrosaurus australis'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'f.\p{Zs}?australis')">
+      <xsl:value-of select="'F. australis'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'chinshakiangosaurus\p{Zs}?chunghoensis')">
+      <xsl:value-of select="'Chinshakiangosaurus chunghoensis'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'c.\p{Zs}?chunghoensis')">
+      <xsl:value-of select="'C. chunghoensis'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'euoplocephalus\p{Zs}?tutus')">
+      <xsl:value-of select="'Euoplocephalus tutus'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'e.\p{Zs}?tutus')">
+      <xsl:value-of select="'E. tutus'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'g\.\p{Zs}?beringei')">
+      <xsl:value-of select="'G. beringei'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'gorilla\p{Zs}?beringei')">
+      <xsl:value-of select="'Gorilla beringei'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'m\.\p{Zs}?assamensis')">
+      <xsl:value-of select="'M. assamensis'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'macaca\p{Zs}?assamensis')">
+      <xsl:value-of select="'Macaca assamensis'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'m\.\p{Zs}?fuscata')">
+      <xsl:value-of select="'M. fuscata'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'macaca\p{Zs}?fuscata')">
+      <xsl:value-of select="'Macaca fuscata'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'m\.\p{Zs}?mulatta')">
+      <xsl:value-of select="'M. mulatta'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'macaca\p{Zs}?mulatta')">
+      <xsl:value-of select="'Macaca mulatta'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'m\.\p{Zs}?nemestrina')">
+      <xsl:value-of select="'M. nemestrina'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'macaca\p{Zs}?nemestrina')">
+      <xsl:value-of select="'Macaca nemestrina'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'m\.\p{Zs}?sphinx')">
+      <xsl:value-of select="'M. sphinx'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'mandrillus\p{Zs}?sphinx')">
+      <xsl:value-of select="'Mandrillus sphinx'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'p\.\p{Zs}?anubis')">
+      <xsl:value-of select="'P. anubis'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'papio\p{Zs}?anubis')">
+      <xsl:value-of select="'Papio anubis'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'p\.\p{Zs}?hamadryas')">
+      <xsl:value-of select="'P. hamadryas'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'papio\p{Zs}?hamadryas')">
+      <xsl:value-of select="'Papio hamadryas'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'p\.\p{Zs}?paniscus')">
+      <xsl:value-of select="'P. paniscus'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'pan\p{Zs}?paniscus')">
+      <xsl:value-of select="'Pan paniscus'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'p\.\p{Zs}?troglodytes')">
+      <xsl:value-of select="'P. troglodytes'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'pan\p{Zs}?troglodytes')">
+      <xsl:value-of select="'Pan troglodytes'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'xenopus')">
+      <xsl:value-of select="'Xenopus'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'salmonella')">
+      <xsl:value-of select="'Salmonella'"/>
+    </xsl:when>
+    <xsl:otherwise>
+      <xsl:value-of select="'undefined'"/>
+    </xsl:otherwise>
+  </xsl:choose>
+</xsl:function>
+  <xsl:function name="e:code-check">
+    <xsl:param name="s" as="xs:string"/>
+    <xsl:element name="code">
+      <xsl:if test="contains($s,'github')">
+        <xsl:element name="match">
+        <xsl:value-of select="'github '"/>
+        </xsl:element>
+      </xsl:if>
+      <xsl:if test="contains($s,'gitlab')">
+        <xsl:element name="match">
+        <xsl:value-of select="'gitlab '"/>
+        </xsl:element>
+      </xsl:if>
+      <xsl:if test="contains($s,'git.exeter.ac.uk')">
+        <xsl:element name="match">
+          <xsl:value-of select="'git.exeter.ac.uk '"/>
+        </xsl:element>
+      </xsl:if>
+      <xsl:if test="contains($s,'codeplex')">
+        <xsl:element name="match">
+        <xsl:value-of select="'codeplex '"/>
+        </xsl:element>
+      </xsl:if>
+      <xsl:if test="contains($s,'sourceforge')">
+        <xsl:element name="match">
+        <xsl:value-of select="'sourceforge '"/>
+        </xsl:element>
+      </xsl:if>
+      <xsl:if test="contains($s,'bitbucket')">
+        <xsl:element name="match">
+        <xsl:value-of select="'bitbucket '"/>
+        </xsl:element>
+      </xsl:if>
+      <xsl:if test="contains($s,'assembla ')">
+        <xsl:element name="match">
+        <xsl:value-of select="'assembla '"/>
+        </xsl:element>
+      </xsl:if>
+    </xsl:element>
+  </xsl:function>
+  <xsl:function name="e:get-xrefs">
+    <xsl:param name="article"/>
+    <xsl:param name="object-id"/>
+    <xsl:param name="object-type"/>
+    <xsl:variable name="object-no" select="replace($object-id,'[^0-9]','')"/>
+    <xsl:element name="matches">
+      <xsl:for-each select="$article//xref[(@ref-type=$object-type) and not(ancestor::caption)]">
+        <xsl:variable name="rid-no" select="replace(./@rid,'[^0-9]','')"/>
+        <xsl:variable name="text-no" select="tokenize(normalize-space(replace(.,'[^0-9]',' ')),'\p{Zs}')[last()]"/>
+        <xsl:choose>
+          <xsl:when test="./@rid = $object-id">
+            <xsl:element name="match">
+              <xsl:attribute name="sec-id">
+                <xsl:value-of select="./ancestor::sec[1]/@id"/>
+              </xsl:attribute>
+              <xsl:value-of select="self::*"/>
+            </xsl:element>
+          </xsl:when>
+          <xsl:when test="contains(./@rid,'app')"/>
+          <xsl:when test="($rid-no lt $object-no) and (./following-sibling::text()[1] = '–') and (./following-sibling::*[1]/name()='xref') and (number(replace(replace(./following-sibling::xref[1]/@rid,'\-','.'),'[a-z]','')) gt number($object-no))">
+            <xsl:element name="match">
+              <xsl:attribute name="sec-id">
+                <xsl:value-of select="./ancestor::sec[1]/@id"/>
+              </xsl:attribute>
+              <xsl:value-of select="self::*"/>
+            </xsl:element>
+          </xsl:when>
+          <xsl:when test="($rid-no lt $object-no) and contains(.,$object-no) and (contains(.,'Videos') or contains(.,'videos') and contains(.,'–'))">
+            <xsl:element name="match">
+              <xsl:attribute name="sec-id">
+                <xsl:value-of select="./ancestor::sec[1]/@id"/>
+              </xsl:attribute>
+              <xsl:value-of select="self::*"/>
+            </xsl:element>
+          </xsl:when>
+          <xsl:when test="($rid-no lt $object-no) and (contains(.,'Videos') or contains(.,'videos') and contains(.,'—')) and ($text-no gt $object-no)">
+            <xsl:element name="match">
+              <xsl:attribute name="sec-id">
+                <xsl:value-of select="./ancestor::sec[1]/@id"/>
+              </xsl:attribute>
+              <xsl:value-of select="self::*"/>
+            </xsl:element>
+          </xsl:when>
+          <xsl:otherwise/>
+        </xsl:choose>
+      </xsl:for-each>
+    </xsl:element>
+  </xsl:function>
+  <xsl:function name="e:get-iso-pub-date">
+    <xsl:param name="element"/>
+    <xsl:choose>
+      <xsl:when test="$element/ancestor-or-self::article//article-meta/pub-date[(@date-type='publication') or (@date-type='pub')]/month">
+        <xsl:variable name="pub-date" select="$element/ancestor-or-self::article//article-meta/pub-date[(@date-type='publication') or (@date-type='pub')]"/>
+        <xsl:value-of select="concat($pub-date/year,'-',$pub-date/month,'-',$pub-date/day)"/>
+      </xsl:when>
+      <xsl:otherwise/>
+    </xsl:choose>
+  </xsl:function>
+  <xsl:function name="e:get-copyright-holder">
+    <xsl:param name="contrib-group"/>
+    <xsl:variable name="author-count" select="count($contrib-group/contrib[@contrib-type='author'])"/>
+    <xsl:choose>
+      <xsl:when test="$author-count lt 1"/>
+      <xsl:when test="$author-count = 1">
+        <xsl:choose>
+          <xsl:when test="$contrib-group/contrib[@contrib-type='author']/collab">
+            <xsl:value-of select="$contrib-group/contrib[@contrib-type='author']/collab[1]/text()[1]"/>
+          </xsl:when>
+          <xsl:otherwise>
+            <xsl:value-of select="$contrib-group/contrib[@contrib-type='author']/name[1]/surname[1]"/>
+          </xsl:otherwise>
+        </xsl:choose>
+      </xsl:when>
+      <xsl:when test="$author-count = 2">
+        <xsl:choose>
+          <xsl:when test="$contrib-group/contrib[@contrib-type='author']/collab">
+            <xsl:choose>
+              <xsl:when test="$contrib-group/contrib[@contrib-type='author'][1]/collab and $contrib-group/contrib[@contrib-type='author'][2]/collab">
+                <xsl:value-of select="concat($contrib-group/contrib[@contrib-type='author']/collab[1]/text()[1],' and ',$contrib-group/contrib[@contrib-type='author']/collab[2]/text()[1])"/>
+              </xsl:when>
+              <xsl:when test="$contrib-group/contrib[@contrib-type='author'][1]/collab">
+                <xsl:value-of select="concat($contrib-group/contrib[@contrib-type='author'][1]/collab[1]/text()[1],' and ',$contrib-group/contrib[@contrib-type='author'][2]/name[1]/surname[1])"/>
+              </xsl:when>
+              <xsl:otherwise>
+                <xsl:value-of select="concat($contrib-group/contrib[@contrib-type='author'][1]/name[1]/surname[1],' and ',$contrib-group/contrib[@contrib-type='author'][2]/collab[1]/text()[1])"/>
+              </xsl:otherwise>
+            </xsl:choose>
+          </xsl:when>
+          <xsl:otherwise>
+            <xsl:value-of select="concat($contrib-group/contrib[@contrib-type='author'][1]/name[1]/surname[1],' and ',$contrib-group/contrib[@contrib-type='author'][2]/name[1]/surname[1])"/>
+          </xsl:otherwise>
+        </xsl:choose>
+      </xsl:when>
+      
+      <xsl:otherwise>
+        <xsl:variable name="is-equal-contrib" select="if ($contrib-group/contrib[@contrib-type='author'][1]/@equal-contrib='yes') then true() else false()"/>
+        <xsl:choose>
+          <xsl:when test="$is-equal-contrib">
+            
+            <xsl:variable name="equal-contrib-rid" select="$contrib-group/contrib[@contrib-type='author'][1]/xref[starts-with(@rid,'equal-contrib')]/@rid"/>
+            <xsl:variable name="first-authors" select="$contrib-group/contrib[@contrib-type='author' and @equal-contrib='yes' and xref[@rid=$equal-contrib-rid] and not(preceding-sibling::contrib[not(xref[@rid=$equal-contrib-rid])])]"/>
+            <xsl:choose>
+              
+              <xsl:when test="$author-count = 3 and count($first-authors) = 3">
+                <xsl:value-of select="concat(e:get-surname($contrib-group/contrib[@contrib-type='author'][1]),                   ', ',                   e:get-surname($contrib-group/contrib[@contrib-type='author'][2]),                   ' and ',                   e:get-surname($contrib-group/contrib[@contrib-type='author'][3]))"/>
+              </xsl:when>
+              
+              <xsl:when test="count($first-authors) gt 3">
+                <xsl:variable name="first-auth-string" select="string-join(for $auth in $contrib-group/contrib[@contrib-type='author'][position() lt 4] return e:get-surname($auth),', ')"/>
+                <xsl:value-of select="concat($first-auth-string,' et al')"/>
+              </xsl:when>
+              
+              <xsl:otherwise>
+                <xsl:variable name="first-auth-string" select="string-join(for $auth in $first-authors return e:get-surname($auth),', ')"/>
+                <xsl:value-of select="concat($first-auth-string,' et al')"/>
+              </xsl:otherwise>
+            </xsl:choose>
+          </xsl:when>
+          
+          <xsl:otherwise>
+            <xsl:value-of select="concat(e:get-surname($contrib-group/contrib[@contrib-type='author'][1]),' et al')"/>
+          </xsl:otherwise>
+        </xsl:choose>
+      </xsl:otherwise>
+    </xsl:choose>
+  </xsl:function>
+  <xsl:function name="e:get-surname" as="text()">
+    <xsl:param name="contrib"/>
+    <xsl:choose>
+      <xsl:when test="$contrib/collab">
+        <xsl:value-of select="$contrib/collab[1]/text()[1]"/>
+      </xsl:when>
+      <xsl:otherwise>
+        <xsl:value-of select="$contrib//name[1]/surname[1]"/>
+      </xsl:otherwise>
+    </xsl:choose>
+  </xsl:function>
+  <xsl:function name="e:insight-box" as="element()">
+    <xsl:param name="box" as="xs:string"/>
+    <xsl:param name="cite-text" as="xs:string"/>
+    <xsl:variable name="box-text" select="substring-after(substring-after($box,'article'),' ')"/> 
+    
+    <xsl:element name="list">
+      <xsl:for-each select="tokenize($cite-text,'\p{Zs}')">
+        <xsl:choose>
+          <xsl:when test="contains($box-text,.)"/>
+          <xsl:otherwise>
+            <xsl:element name="item">
+              <xsl:attribute name="type">cite</xsl:attribute>
+              <xsl:value-of select="."/>
+            </xsl:element>
+          </xsl:otherwise>
+        </xsl:choose>
+      </xsl:for-each>
+      <xsl:for-each select="tokenize($box-text,'\p{Zs}')">
+        <xsl:choose>
+          <xsl:when test="contains($cite-text,.)"/>
+          <xsl:otherwise>
+            <xsl:element name="item">
+              <xsl:attribute name="type">box</xsl:attribute>
+              <xsl:value-of select="."/>
+            </xsl:element>
+          </xsl:otherwise>
+        </xsl:choose>
+      </xsl:for-each>
+    </xsl:element>
+  </xsl:function>
+  <let name="latin-regex" value="'in\p{Zs}+vitro|ex\p{Zs}+vitro|in\p{Zs}+vivo|ex\p{Zs}+vivo|a\p{Zs}+priori|a\p{Zs}+posteriori|de\p{Zs}+novo|in\p{Zs}+utero|in\p{Zs}+natura|in\p{Zs}+situ|in\p{Zs}+planta|in\p{Zs}+cellulo|rete\p{Zs}+mirabile|nomen\p{Zs}+novum| sensu |ad\p{Zs}+libitum|in\p{Zs}+ovo'"/>
+  <xsl:function name="e:get-latin-terms" as="element()">
+    <xsl:param name="article" as="element()"/>
+    <xsl:param name="regex" as="xs:string"/>
+    
+    <xsl:variable name="roman-text" select="lower-case(       string-join(for $x in $article/*[local-name() = 'body' or local-name() = 'back']//*       return       if ($x/ancestor-or-self::sec[@sec-type='additional-information']) then ()       else if ($x/ancestor-or-self::ref-list) then ()       else if ($x/local-name() = 'italic') then ()       else $x/text(),' '))"/>
+    <xsl:variable name="italic-text" select="lower-case(string-join($article//*:italic[not(ancestor::ref-list) and not(ancestor::sec[@sec-type='additional-information'])],' '))"/>
+    
+    
+    <xsl:element name="result">
+      <xsl:choose>
+        <xsl:when test="matches($roman-text,$regex)">
+          <xsl:element name="list">
+            <xsl:attribute name="list-type">roman</xsl:attribute>
+            <xsl:for-each select="tokenize($regex,'\|')">
+              <xsl:variable name="display" select="replace(replace(.,'\\p\{Zs\}\+',' '),'^ | $','')"/>
+              <xsl:element name="match">
+                <xsl:attribute name="count">
+                  <xsl:value-of select="count(tokenize($roman-text,.)) - 1"/>
+                </xsl:attribute>
+                <xsl:value-of select="$display"/>
+              </xsl:element>
+            </xsl:for-each>
+          </xsl:element>
+        </xsl:when>
+        <xsl:otherwise>
+          <xsl:element name="list">
+            <xsl:attribute name="list-type">roman</xsl:attribute>
+          </xsl:element>
+        </xsl:otherwise>
+      </xsl:choose>
+      <xsl:choose>
+        <xsl:when test="matches($italic-text,$regex)">
+          <xsl:element name="list">
+            <xsl:attribute name="list-type">italic</xsl:attribute>
+            <xsl:for-each select="tokenize($regex,'\|')">
+              <xsl:variable name="display" select="replace(.,'\\p\{Zs\}\+',' ')"/>
+              <xsl:element name="match">
+                <xsl:attribute name="count">
+                  <xsl:value-of select="count(tokenize($italic-text,.)) - 1"/>
+                </xsl:attribute>
+                <xsl:value-of select="$display"/>
+              </xsl:element>
+            </xsl:for-each>
+          </xsl:element>
+        </xsl:when>
+        <xsl:otherwise>
+          <xsl:element name="list">
+            <xsl:attribute name="list-type">italic</xsl:attribute>
+          </xsl:element>
+        </xsl:otherwise>
+      </xsl:choose>
+    </xsl:element>
+  </xsl:function>
+  <xsl:function name="e:print-latin-terms" as="xs:string">
+    <xsl:param name="list" as="element()"/>
+    <xsl:value-of select="string-join(       for $term in $list//*:match[@count != '0']        return if (number($term/@count) gt 1) then concat($term/@count,' instances of ',$term)       else concat($term/@count,' instance of ',$term)       ,', ')"/>
+  </xsl:function>
+  <xsl:function name="e:list-panels">
+    <xsl:param name="caption" as="xs:string"/>
+    <xsl:element name="list">
+      <xsl:for-each select="tokenize($caption,'\.\p{Zs}+')">
+        <xsl:if test="matches(.,'^[B-K]\p{P}?[A-K]?\.?\p{Zs}+')">
+          <xsl:element name="item">
+            <xsl:attribute name="token">
+              <xsl:value-of select="substring-before(.,' ')"/>
+            </xsl:attribute>
+            <xsl:value-of select="."/>
+          </xsl:element>
+        </xsl:if>
+      </xsl:for-each>
+    </xsl:element>
+  </xsl:function>
+  <xsl:function name="e:get-weekday" as="xs:integer?">
+    <xsl:param name="date" as="xs:anyAtomicType?"/>
+    <xsl:sequence select="       if (empty($date)) then ()       else xs:integer((xs:date($date) - xs:date('1901-01-06')) div xs:dayTimeDuration('P1D')) mod 7       "/>
+  </xsl:function>
+  <xsl:function name="e:line-count" as="xs:integer">
+    <xsl:param name="arg" as="xs:string?"/>
+    
+    <xsl:sequence select="count(tokenize($arg,'(\r\n?|\n\r?)'))"/>
+    
+  </xsl:function>
+  <pattern id="article-metadata">
+    <rule context="pub-date" id="pub-date-tests">
+      <let name="allowed-attributes" value="('publication-format','date-type','iso-8601-date')"/>
+      <report test="preceding-sibling::pub-date" role="error" id="pub-date-test-5">There can only be one pub-date in article-meta. But this pub-date has a preceding one.</report>
+    </rule>
+  </pattern>
+  <pattern id="root-pattern">
+    <rule context="root" id="root-rule">
+      <assert test="descendant::pub-date" role="error" id="pub-date-tests-xspec-assert">pub-date must be present.</assert>
+    </rule>
+  </pattern>
+</schema>
\ No newline at end of file
diff --git a/test/tests/gen/pub-date-tests/pub-date-test-6/fail.xml b/test/tests/gen/pub-date-tests/pub-date-test-6/fail.xml
new file mode 100644
index 0000000000..8f99d9748b
--- /dev/null
+++ b/test/tests/gen/pub-date-tests/pub-date-test-6/fail.xml
@@ -0,0 +1,15 @@
+<?oxygen SCHSchema="pub-date-test-6.sch"?>
+<!--Context: pub-date
+Test: assert    @publication-format
+Message: pub-date must have the attribute publication-format. -->
+<root xmlns:ali="http://www.niso.org/schemas/ali/1.0/" xmlns:mml="http://www.w3.org/1998/Math/MathML" xmlns:xlink="http://www.w3.org/1999/xlink">
+    <article>
+        <article-meta>
+            <pub-date date-type="publication">
+                <day>22</day>
+                <month>10</month>
+                <year>2023</year>
+            </pub-date>
+        </article-meta>
+    </article>
+</root>
\ No newline at end of file
diff --git a/test/tests/gen/pub-date-tests/pub-date-test-6/pass.xml b/test/tests/gen/pub-date-tests/pub-date-test-6/pass.xml
new file mode 100644
index 0000000000..2cc7d63033
--- /dev/null
+++ b/test/tests/gen/pub-date-tests/pub-date-test-6/pass.xml
@@ -0,0 +1,15 @@
+<?oxygen SCHSchema="pub-date-test-6.sch"?>
+<!--Context: pub-date
+Test: assert    @publication-format
+Message: pub-date must have the attribute publication-format. -->
+<root xmlns:ali="http://www.niso.org/schemas/ali/1.0/" xmlns:mml="http://www.w3.org/1998/Math/MathML" xmlns:xlink="http://www.w3.org/1999/xlink">
+    <article>
+        <article-meta>
+            <pub-date publication-format="electronic" date-type="publication">
+                <day>22</day>
+                <month>10</month>
+                <year>2023</year>
+            </pub-date>
+        </article-meta>
+    </article>
+</root>
\ No newline at end of file
diff --git a/test/tests/gen/pub-date-tests/pub-date-test-6/pub-date-test-6.sch b/test/tests/gen/pub-date-tests/pub-date-test-6/pub-date-test-6.sch
new file mode 100644
index 0000000000..5fb2f0e4e1
--- /dev/null
+++ b/test/tests/gen/pub-date-tests/pub-date-test-6/pub-date-test-6.sch
@@ -0,0 +1,1303 @@
+<schema xmlns="http://purl.oclc.org/dsdl/schematron" xmlns:xlink="http://www.w3.org/1999/xlink" xmlns:xsl="http://www.w3.org/1999/XSL/Transform" xmlns:java="http://www.java.com/" xmlns:file="java.io.File" xmlns:ali="http://www.niso.org/schemas/ali/1.0/" xmlns:mml="http://www.w3.org/1998/Math/MathML" queryBinding="xslt2">
+  <title>eLife Schematron</title>
+  <ns uri="http://www.niso.org/schemas/ali/1.0/" prefix="ali"/>
+  <ns uri="http://www.w3.org/XML/1998/namespace" prefix="xml"/>
+  <ns uri="http://www.w3.org/1999/xlink" prefix="xlink"/>
+  <ns uri="http://www.w3.org/2001/XInclude" prefix="xi"/>
+  <ns uri="http://www.w3.org/1998/Math/MathML" prefix="mml"/>
+  <ns uri="http://saxon.sf.net/" prefix="saxon"/>
+  <ns uri="http://purl.org/dc/terms/" prefix="dc"/>
+  <ns uri="http://www.w3.org/2001/XMLSchema" prefix="xs"/>
+  <ns uri="https://elifesciences.org/namespace" prefix="e"/>
+  <ns uri="java.io.File" prefix="file"/>
+  <ns uri="http://www.java.com/" prefix="java"/>
+  <let name="features-subj" value="('Feature Article', 'Insight', 'Editorial')"/>
+  <let name="features-article-types" value="('article-commentary','editorial','discussion')"/>
+  <let name="research-subj" value="('Research Article', 'Short Report', 'Tools and Resources', 'Research Advance', 'Registered Report', 'Replication Study', 'Research Communication', 'Correction', 'Retraction', 'Scientific Correspondence', 'Review Article')"/>
+  <let name="notice-article-types" value="('correction','retraction','expression-of-concern')"/>
+  <let name="notice-display-types" value="('Correction','Retraction','Expression of Concern')"/>
+  <let name="allowed-article-types" value="('research-article','review-article',$features-article-types, $notice-article-types)"/>
+  <let name="allowed-disp-subj" value="($research-subj, $features-subj)"/>
+  <let name="MSAs" value="('Biochemistry and Chemical Biology', 'Cancer Biology', 'Cell Biology', 'Chromosomes and Gene Expression', 'Computational and Systems Biology', 'Developmental Biology', 'Ecology', 'Epidemiology and Global Health', 'Evolutionary Biology', 'Genetics and Genomics', 'Medicine', 'Immunology and Inflammation', 'Microbiology and Infectious Disease', 'Neuroscience', 'Physics of Living Systems', 'Plant Biology', 'Stem Cells and Regenerative Medicine', 'Structural Biology and Molecular Biophysics')"/>
+  <let name="funders" value="'../../../../../src/funders.xml'"/>
+  <let name="wellcome-fundref-ids" value="('http://dx.doi.org/10.13039/100010269','http://dx.doi.org/10.13039/100004440')"/>
+  <xsl:function name="e:is-prc" as="xs:boolean">
+    <xsl:param name="elem" as="node()"/>
+    <xsl:choose>
+      <xsl:when test="$elem/name()='article'">
+        <xsl:value-of select="e:is-prc-helper($elem)"/>
+      </xsl:when>
+      <xsl:otherwise>
+        <xsl:value-of select="e:is-prc-helper($elem/ancestor::article[1])"/>
+      </xsl:otherwise>
+    </xsl:choose>
+  </xsl:function>
+  <xsl:function name="e:is-prc-helper" as="xs:boolean">
+    <xsl:param name="article" as="node()"/>
+    <xsl:choose>
+      <xsl:when test="$article//article-meta/custom-meta-group/custom-meta[meta-name='publishing-route']/meta-value='prc'">
+        <xsl:value-of select="true()"/>
+      </xsl:when>
+      <xsl:otherwise>
+        <xsl:value-of select="false()"/>
+      </xsl:otherwise>
+    </xsl:choose>
+  </xsl:function>
+  <xsl:function name="e:get-version" as="xs:string">
+    <xsl:param name="elem" as="node()"/>
+    <xsl:choose>
+      <xsl:when test="$elem/name()='article'">
+        <xsl:value-of select="e:get-version-helper($elem)"/>
+      </xsl:when>
+      <xsl:otherwise>
+        <xsl:value-of select="e:get-version-helper($elem/ancestor::article[1])"/>
+      </xsl:otherwise>
+    </xsl:choose>
+  </xsl:function>
+  <xsl:function name="e:get-version-helper" as="xs:string">
+    <xsl:param name="article" as="node()"/>
+    <xsl:choose>
+      <xsl:when test="$article//article-meta/custom-meta-group/custom-meta[meta-name='schema-version']/meta-value">
+        <xsl:value-of select="$article//article-meta/custom-meta-group/custom-meta[meta-name='schema-version']/meta-value"/>
+      </xsl:when>
+      <xsl:otherwise>
+        <xsl:value-of select="'1'"/>
+      </xsl:otherwise>
+    </xsl:choose>
+  </xsl:function>
+  <xsl:function name="e:titleCaseToken" as="xs:string">
+    <xsl:param name="s" as="xs:string"/>
+    <xsl:choose>
+      <xsl:when test="contains($s,'-')">
+        <xsl:value-of select="concat(           upper-case(substring(substring-before($s,'-'), 1, 1)),           lower-case(substring(substring-before($s,'-'),2)),           '-',           upper-case(substring(substring-after($s,'-'), 1, 1)),           lower-case(substring(substring-after($s,'-'),2)))"/>
+      </xsl:when>
+      <xsl:when test="lower-case($s)='elife'">
+        <xsl:value-of select="'eLife'"/>
+      </xsl:when>
+      <xsl:when test="lower-case($s)=('and','or','the','an','of','in','as','at','by','for','a','to','up','but','yet')">
+        <xsl:value-of select="lower-case($s)"/>
+      </xsl:when>
+      <xsl:when test="matches(lower-case($s),'^rna$|^dna$|^mri$|^hiv$|^tor$|^aids$|^covid-19$|^covid$')">
+        <xsl:value-of select="upper-case($s)"/>
+      </xsl:when>
+      <xsl:when test="matches(lower-case($s),'[1-4]d')">
+        <xsl:value-of select="upper-case($s)"/>
+      </xsl:when>
+      <xsl:otherwise>
+        <xsl:value-of select="concat(upper-case(substring($s, 1, 1)), lower-case(substring($s, 2)))"/>
+      </xsl:otherwise>
+    </xsl:choose>
+  </xsl:function>
+  <xsl:function name="e:titleCase" as="xs:string">
+    <xsl:param name="s" as="xs:string"/>
+    <xsl:choose>
+      
+      <xsl:when test="lower-case($s)='protein kinase a'">
+        <xsl:value-of select="'Protein Kinase A'"/>
+      </xsl:when>
+      <xsl:when test="contains($s,' ')">
+        <xsl:variable name="token1" select="substring-before($s,' ')"/>
+        <xsl:variable name="token2" select="substring-after($s,$token1)"/>
+        <xsl:choose>
+          <xsl:when test="lower-case($token1)='elife'">
+            <xsl:value-of select="concat('eLife',               ' ',               string-join(for $x in tokenize(substring-after($token2,' '),'\p{Zs}') return e:titleCaseToken($x),' ')               )"/>
+          </xsl:when>
+          <xsl:when test="matches(lower-case($token1),'^rna$|^dna$|^mri$|^hiv$|^tor$|^aids$|^covid-19$|^covid$')">
+            <xsl:value-of select="concat(upper-case($token1),               ' ',               string-join(for $x in tokenize(substring-after($token2,' '),'\p{Zs}') return e:titleCaseToken($x),' ')               )"/>
+          </xsl:when>
+          <xsl:when test="matches(lower-case($token1),'[1-4]d')">
+            <xsl:value-of select="concat(upper-case($token1),               ' ',               string-join(for $x in tokenize(substring-after($token2,' '),'\p{Zs}') return e:titleCaseToken($x),' ')               )"/>
+          </xsl:when>
+          <xsl:when test="contains($token1,'-')">
+            <xsl:value-of select="string-join(for $x in tokenize($s,'\p{Zs}') return e:titleCaseToken($x),' ')"/>
+          </xsl:when>
+          <xsl:otherwise>
+            <xsl:value-of select="concat(               concat(upper-case(substring($token1, 1, 1)), lower-case(substring($token1, 2))),               ' ',               string-join(for $x in tokenize(substring-after($token2,' '),'\p{Zs}') return e:titleCaseToken($x),' ')               )"/>
+          </xsl:otherwise>
+        </xsl:choose>
+      </xsl:when>
+      <xsl:when test="lower-case($s)='elife'">
+        <xsl:value-of select="'eLife'"/>
+      </xsl:when>
+      <xsl:when test="lower-case($s)=('and','or','the','an','of')">
+        <xsl:value-of select="lower-case($s)"/>
+      </xsl:when>
+      <xsl:when test="matches(lower-case($s),'^rna$|^dna$|^mri$|^hiv$|^tor$|^aids$|^covid-19$|^covid$')">
+        <xsl:value-of select="upper-case($s)"/>
+      </xsl:when>
+      <xsl:when test="matches(lower-case($s),'[1-4]d')">
+        <xsl:value-of select="upper-case($s)"/>
+      </xsl:when>
+      <xsl:otherwise>
+        <xsl:value-of select="e:titleCaseToken($s)"/>
+      </xsl:otherwise>
+    </xsl:choose>
+  </xsl:function>
+  <xsl:function name="e:article-type2title" as="xs:string">
+    <xsl:param name="s" as="xs:string"/>
+    <xsl:choose>
+      <xsl:when test="$s = 'Replication Study'">
+        <xsl:value-of select="'Replication Study:'"/>
+      </xsl:when>
+      <xsl:when test="$s = 'Registered Report'">
+        <xsl:value-of select="'Registered report:'"/>
+      </xsl:when>
+      <xsl:when test="$s = 'Correction'">
+        <xsl:value-of select="'Correction:'"/>
+      </xsl:when>
+      <xsl:when test="$s = 'Retraction'">
+        <xsl:value-of select="'Retraction:'"/>
+      </xsl:when>
+      <xsl:when test="$s = 'Expression of Concern'">
+        <xsl:value-of select="'Expression of Concern:'"/>
+      </xsl:when>
+      <xsl:otherwise>
+        <xsl:value-of select="'undefined'"/>
+      </xsl:otherwise>
+    </xsl:choose>
+  </xsl:function>
+  <xsl:function name="e:sec-type2title" as="xs:string">
+    <xsl:param name="s" as="xs:string"/>
+    <xsl:choose>
+      <xsl:when test="$s = 'intro'">
+        <xsl:value-of select="'Introduction'"/>
+      </xsl:when>
+      <xsl:when test="$s = 'results'">
+        <xsl:value-of select="'Results'"/>
+      </xsl:when>
+      <xsl:when test="$s = 'discussion'">
+        <xsl:value-of select="'Discussion'"/>
+      </xsl:when>
+      <xsl:when test="$s = 'materials|methods'">
+        <xsl:value-of select="'Materials and methods'"/>
+      </xsl:when>
+      <xsl:when test="$s = 'results|discussion'">
+        <xsl:value-of select="'Results and discussion'"/>
+      </xsl:when>
+      <xsl:when test="$s = 'methods'">
+        <xsl:value-of select="'Methods'"/>
+      </xsl:when>
+      <xsl:when test="$s = 'model'">
+        <xsl:value-of select="'Model'"/>
+      </xsl:when>
+      <xsl:when test="$s = 'additional-information'">
+        <xsl:value-of select="'Additional information'"/>
+      </xsl:when>
+      <xsl:when test="$s = 'supplementary-material'">
+        <xsl:value-of select="'Additional files'"/>
+      </xsl:when>
+      <xsl:when test="$s = 'data-availability'">
+        <xsl:value-of select="'Data availability'"/>
+      </xsl:when>
+      <xsl:otherwise>
+        <xsl:value-of select="'undefined'"/>
+      </xsl:otherwise>
+    </xsl:choose>
+  </xsl:function>
+  <xsl:function name="e:fig-id-type" as="xs:string">
+    <xsl:param name="s" as="xs:string"/>
+    <xsl:choose>
+      <xsl:when test="matches($s,'^fig[0-9]{1,3}$')">
+        <xsl:value-of select="'Figure'"/>
+      </xsl:when>
+      <xsl:when test="matches($s,'^fig[0-9]{1,3}s[0-9]{1,3}$')">
+        <xsl:value-of select="'Figure supplement'"/>
+      </xsl:when>
+      <xsl:when test="matches($s,'^box[0-9]{1,3}fig[0-9]{1,3}$')">
+        <xsl:value-of select="'Box figure'"/>
+      </xsl:when>
+      <xsl:when test="matches($s,'^app[0-9]{1,3}fig[0-9]{1,3}$')">
+        <xsl:value-of select="'Appendix figure'"/>
+      </xsl:when>
+      <xsl:when test="matches($s,'^app[0-9]{1,3}fig[0-9]{1,3}s[0-9]{1,3}$')">
+        <xsl:value-of select="'Appendix figure supplement'"/>
+      </xsl:when>
+      <xsl:when test="matches($s,'^respfig[0-9]{1,3}$|^sa[0-9]fig[0-9]{1,3}$')">
+        <xsl:value-of select="'Author response figure'"/>
+      </xsl:when>
+      <xsl:when test="matches($s,'^C[0-9]{1,3}$|^chem[0-9]{1,3}$')">
+        <xsl:value-of select="'Chemical structure'"/>
+      </xsl:when>
+      <xsl:when test="matches($s,'^app[0-9]{1,3}C[0-9]{1,3}$|^app[0-9]{1,3}chem[0-9]{1,3}$')">
+        <xsl:value-of select="'Appendix chemical structure'"/>
+      </xsl:when>
+      <xsl:when test="matches($s,'^S[0-9]{1,3}$|^scheme[0-9]{1,3}$')">
+        <xsl:value-of select="'Scheme'"/>
+      </xsl:when>
+      <xsl:when test="matches($s,'^app[0-9]{1,3}S[0-9]{1,3}$|^app[0-9]{1,3}scheme[0-9]{1,3}$')">
+        <xsl:value-of select="'Appendix scheme'"/>
+      </xsl:when>
+      <xsl:otherwise>
+        <xsl:value-of select="'undefined'"/>
+      </xsl:otherwise>
+    </xsl:choose>
+  </xsl:function>
+  <xsl:function name="e:stripDiacritics" as="xs:string">
+    <xsl:param name="string" as="xs:string"/>
+    <xsl:value-of select="replace(replace(replace(translate(normalize-unicode($string,'NFD'),'ƀȼđɇǥħɨıɉꝁłøɍŧɏƶ','bcdeghiijklortyz'),'[\p{M}’]',''),'æ','ae'),'ß','ss')"/>
+  </xsl:function>
+  <xsl:function name="e:ref-list-string" as="xs:string">
+    <xsl:param name="ref"/>
+    <xsl:choose>
+      <xsl:when test="$ref/element-citation[1]/person-group[1]/* and $ref/element-citation[1]/year">
+        <xsl:value-of select="concat(           replace(e:get-collab-or-surname($ref/element-citation[1]/person-group[1]/*[1]),'\p{Zs}',''),           ' ',           $ref/element-citation[1]/year[1],           ' ',           string-join(for $x in $ref/element-citation[1]/person-group[1]/*[position()=(2,3)]           return replace(e:get-collab-or-surname($x),'\p{Zs}',''),' ')           )"/>
+      </xsl:when>
+      <xsl:when test="$ref/element-citation/person-group[1]/*">
+        <xsl:value-of select="concat(           replace(e:get-collab-or-surname($ref/element-citation[1]/person-group[1]/*[1]),'\p{Zs}',''),           ' 9999 ',           string-join(for $x in $ref/element-citation[1]/person-group[1]/*[position()=(2,3)]           return replace(e:get-collab-or-surname($x),'\p{Zs}',''),' ')           )"/>
+      </xsl:when>
+      <xsl:when test="$ref/element-citation/year">
+        <xsl:value-of select="concat(' ',$ref/element-citation[1]/year[1])"/>
+      </xsl:when>
+      <xsl:otherwise>
+        <xsl:value-of select="'zzzzz 9999'"/>
+      </xsl:otherwise>
+    </xsl:choose>
+  </xsl:function>
+  <xsl:function name="e:ref-list-string2" as="xs:string">
+    <xsl:param name="ref"/>
+    <xsl:choose>
+      <xsl:when test="$ref/element-citation[1]/year and count($ref/element-citation[1]/person-group[1]/*) = 2">
+        <xsl:value-of select="concat(           e:get-collab-or-surname($ref/element-citation[1]/person-group[1]/*[1]),           ' ',           e:get-collab-or-surname($ref/element-citation[1]/person-group[1]/*[2]),           ' ',           $ref/element-citation[1]/year[1])"/>
+      </xsl:when>
+      <xsl:when test="$ref/element-citation/person-group[1]/* and $ref/element-citation[1]/year">
+        <xsl:value-of select="concat(           e:get-collab-or-surname($ref/element-citation[1]/person-group[1]/*[1]),           ' ',           $ref/element-citation[1]/year[1])"/>
+      </xsl:when>
+      <xsl:when test="$ref/element-citation/person-group[1]/*">
+        <xsl:value-of select="concat(           e:get-collab-or-surname($ref/element-citation[1]/person-group[1]/*[1]),           ' 9999 ')"/>
+      </xsl:when>
+      <xsl:when test="$ref/element-citation/year">
+        <xsl:value-of select="concat(' ',$ref/element-citation[1]/year[1])"/>
+      </xsl:when>
+      <xsl:otherwise>
+        <xsl:value-of select="'zzzzz 9999'"/>
+      </xsl:otherwise>
+    </xsl:choose>
+  </xsl:function>
+  <xsl:function name="e:get-collab-or-surname" as="xs:string?">
+    <xsl:param name="collab-or-name"/>
+    <xsl:choose>
+      <xsl:when test="$collab-or-name/name()='collab'">
+        <xsl:value-of select="e:stripDiacritics(replace(lower-case($collab-or-name),'\.',''))"/>
+      </xsl:when>
+      <xsl:when test="$collab-or-name/surname">
+        <xsl:value-of select="e:stripDiacritics(lower-case($collab-or-name/surname[1]))"/>
+      </xsl:when>
+      <xsl:otherwise/>
+    </xsl:choose>
+  </xsl:function>
+  <xsl:function name="e:cite-name-text" as="xs:string">
+    <xsl:param name="person-group"/>
+    <xsl:choose>
+      <xsl:when test="(count($person-group/*) = 1) and $person-group/name">
+        <xsl:value-of select="$person-group/name/surname[1]"/>
+      </xsl:when>
+      <xsl:when test="(count($person-group/*) = 1) and $person-group/collab">
+        <xsl:value-of select="$person-group/collab"/>
+      </xsl:when>
+      <xsl:when test="(count($person-group/*) = 2) and (count($person-group/name) = 1) and $person-group/*[1]/local-name() = 'collab'">
+        <xsl:value-of select="concat($person-group/collab,' and ',$person-group/name/surname[1])"/>
+      </xsl:when>
+      <xsl:when test="(count($person-group/*) = 2) and (count($person-group/name) = 1) and $person-group/*[1]/local-name() = 'name'">
+        <xsl:value-of select="concat($person-group/name/surname[1],' and ',$person-group/collab)"/>
+      </xsl:when>
+      <xsl:when test="(count($person-group/*) = 2) and (count($person-group/name) = 2)">
+        <xsl:value-of select="concat($person-group/name[1]/surname[1],' and ',$person-group/name[2]/surname[1])"/>
+      </xsl:when>
+      <xsl:when test="(count($person-group/*) = 2) and (count($person-group/collab) = 2)">
+        <xsl:value-of select="concat($person-group/collab[1],' and ',$person-group/collab[2])"/>
+      </xsl:when>
+      <xsl:when test="(count($person-group/*) ge 2) and $person-group/*[1]/local-name() = 'collab'">
+        <xsl:value-of select="concat($person-group/collab[1], ' et al.')"/>
+      </xsl:when>
+      <xsl:when test="(count($person-group/*) ge 2) and $person-group/*[1]/local-name() = 'name'">
+        <xsl:value-of select="concat($person-group/name[1]/surname[1], ' et al.')"/>
+      </xsl:when>
+      <xsl:otherwise>
+        <xsl:value-of select="'undetermined'"/>
+      </xsl:otherwise>
+    </xsl:choose>
+  </xsl:function>
+  <xsl:function name="e:citation-format1" as="xs:string">
+    <xsl:param name="element-citation"/>
+    <xsl:choose>
+      <xsl:when test="$element-citation/person-group and $element-citation//year">
+        <xsl:value-of select="concat(e:cite-name-text($element-citation/person-group[1]),', ',$element-citation/descendant::year[1])"/>
+      </xsl:when>
+      <xsl:when test="$element-citation/person-group and not($element-citation//year)">
+        <xsl:value-of select="concat(e:cite-name-text($element-citation/person-group[1]),', ')"/>
+      </xsl:when>
+      <xsl:when test="not($element-citation/person-group) and $element-citation//year">
+        <xsl:value-of select="concat('et al., ',$element-citation/descendant::year[1])"/>
+      </xsl:when>
+      <xsl:otherwise>
+        <xsl:value-of select="', '"/>
+      </xsl:otherwise>
+    </xsl:choose>
+  </xsl:function>
+  <xsl:function name="e:citation-format2" as="xs:string">
+    <xsl:param name="element-citation"/>
+    <xsl:choose>
+      <xsl:when test="$element-citation/person-group and $element-citation//year">
+        <xsl:value-of select="concat(e:cite-name-text($element-citation/person-group[1]),' (',$element-citation/descendant::year[1],')')"/>
+      </xsl:when>
+      <xsl:when test="$element-citation/person-group and not($element-citation//year)">
+        <xsl:value-of select="concat(e:cite-name-text($element-citation/person-group[1]),' ()')"/>
+      </xsl:when>
+      <xsl:when test="not($element-citation/person-group) and $element-citation//year">
+        <xsl:value-of select="concat('et al. (',$element-citation/descendant::year[1],')')"/>
+      </xsl:when>
+      <xsl:otherwise>
+        <xsl:value-of select="', '"/>
+      </xsl:otherwise>
+    </xsl:choose>
+  </xsl:function>
+  <xsl:function name="e:ref-cite-list">
+    <xsl:param name="ref-list" as="node()"/>
+    <xsl:element name="list">
+      <xsl:for-each select="$ref-list/ref[element-citation[year]]">
+        <xsl:variable name="cite" select="e:citation-format1(./element-citation[1])"/>
+        <xsl:element name="item">
+          <xsl:attribute name="id">
+            <xsl:value-of select="./@id"/>
+          </xsl:attribute>
+          <xsl:attribute name="no-suffix">
+            <xsl:value-of select="replace($cite,'[A-Za-z]$','')"/>
+          </xsl:attribute>
+          <xsl:value-of select="$cite"/>
+        </xsl:element>
+      </xsl:for-each>
+    </xsl:element>
+  </xsl:function>
+  <xsl:function name="e:non-distinct-citations">
+    <xsl:param name="cite-list" as="node()"/>
+    <xsl:element name="list">
+    <xsl:for-each select="$cite-list//*:item">
+      <xsl:variable name="cite" select="./string()"/>
+      <xsl:choose>
+        <xsl:when test="./preceding::*:item/string() = $cite">
+          <xsl:element name="item">
+            <xsl:attribute name="id">
+              <xsl:value-of select="./@id"/>
+            </xsl:attribute>
+            <xsl:value-of select="$cite"/>
+          </xsl:element>
+        </xsl:when>
+        <xsl:when test="not(matches($cite,'[A-Za-z]$')) and (./preceding::*:item/@no-suffix/string() = $cite)">
+          <xsl:element name="item">
+            <xsl:attribute name="id">
+              <xsl:value-of select="./@id"/>
+            </xsl:attribute>
+          <xsl:value-of select="$cite"/>
+          </xsl:element>
+        </xsl:when>
+        <xsl:when test="not(matches($cite,'[A-Za-z]$')) and ./following::*:item/@no-suffix/string() = $cite">
+          <xsl:element name="item">
+            <xsl:attribute name="id">
+              <xsl:value-of select="./@id"/>
+            </xsl:attribute>
+          <xsl:value-of select="$cite"/>
+          </xsl:element>
+        </xsl:when>
+        <xsl:otherwise/>
+      </xsl:choose>
+    </xsl:for-each>
+    </xsl:element>
+  </xsl:function>
+  <xsl:function name="e:get-name" as="xs:string">
+    <xsl:param name="name"/>
+    <xsl:choose>
+      <xsl:when test="$name/given-names[1] and $name/surname[1] and $name/suffix[1]">
+        <xsl:value-of select="concat($name/given-names[1],' ',$name/surname[1],' ',$name/suffix[1])"/>
+      </xsl:when>
+      <xsl:when test="not($name/given-names[1]) and $name/surname[1] and $name/suffix[1]">
+        <xsl:value-of select="concat($name/surname[1],' ',$name/suffix[1])"/>
+      </xsl:when>
+      <xsl:when test="$name/given-names[1] and $name/surname[1] and not($name/suffix[1])">
+        <xsl:value-of select="concat($name/given-names[1],' ',$name/surname[1])"/>
+      </xsl:when>
+      <xsl:when test="not($name/given-names[1]) and $name/surname[1] and not($name/suffix[1])">
+        <xsl:value-of select="$name/surname[1]"/>
+      </xsl:when>
+      <xsl:otherwise>
+        
+        <xsl:value-of select="'No elements present'"/>
+      </xsl:otherwise>
+    </xsl:choose>
+  </xsl:function>
+  <xsl:function name="e:get-collab">
+    <xsl:param name="collab"/>
+    <xsl:for-each select="$collab/(*|text())">
+      <xsl:choose>
+        <xsl:when test="./name()='contrib-group'"/>
+        <xsl:otherwise>
+          <xsl:value-of select="."/>
+        </xsl:otherwise>
+      </xsl:choose>
+    </xsl:for-each>
+  </xsl:function>
+  <xsl:function name="e:isbn-sum" as="xs:integer">
+    <xsl:param name="s" as="xs:string"/>
+    <xsl:choose>
+      <xsl:when test="string-length($s) = 10">
+        <xsl:variable name="d1" select="number(substring($s,1,1)) * 10"/>
+        <xsl:variable name="d2" select="number(substring($s,2,1)) * 9"/>
+        <xsl:variable name="d3" select="number(substring($s,3,1)) * 8"/>
+        <xsl:variable name="d4" select="number(substring($s,4,1)) * 7"/>
+        <xsl:variable name="d5" select="number(substring($s,5,1)) * 6"/>
+        <xsl:variable name="d6" select="number(substring($s,6,1)) * 5"/>
+        <xsl:variable name="d7" select="number(substring($s,7,1)) * 4"/>
+        <xsl:variable name="d8" select="number(substring($s,8,1)) * 3"/>
+        <xsl:variable name="d9" select="number(substring($s,9,1)) * 2"/>
+        <xsl:variable name="d10" select="number(substring($s,10,1)) * 1"/>
+        <xsl:value-of select="number($d1 + $d2 + $d3 + $d4 + $d5 + $d6 + $d7 + $d8 + $d9 + $d10) mod 11"/>
+      </xsl:when>
+      <xsl:when test="string-length($s) = 13">
+        <xsl:variable name="d1" select="number(substring($s,1,1))"/>
+        <xsl:variable name="d2" select="number(substring($s,2,1)) * 3"/>
+        <xsl:variable name="d3" select="number(substring($s,3,1))"/>
+        <xsl:variable name="d4" select="number(substring($s,4,1)) * 3"/>
+        <xsl:variable name="d5" select="number(substring($s,5,1))"/>
+        <xsl:variable name="d6" select="number(substring($s,6,1)) * 3"/>
+        <xsl:variable name="d7" select="number(substring($s,7,1))"/>
+        <xsl:variable name="d8" select="number(substring($s,8,1)) * 3"/>
+        <xsl:variable name="d9" select="number(substring($s,9,1))"/>
+        <xsl:variable name="d10" select="number(substring($s,10,1)) * 3"/>
+        <xsl:variable name="d11" select="number(substring($s,11,1))"/>
+        <xsl:variable name="d12" select="number(substring($s,12,1)) * 3"/>
+        <xsl:variable name="d13" select="number(substring($s,13,1))"/>
+        <xsl:value-of select="number($d1 + $d2 + $d3 + $d4 + $d5 + $d6 + $d7 + $d8 + $d9 + $d10 + $d11 + $d12 + $d13) mod 10"/>
+      </xsl:when>
+      <xsl:otherwise>
+        <xsl:value-of select="number('1')"/>
+      </xsl:otherwise>
+    </xsl:choose>
+  </xsl:function>
+  <xsl:function name="e:escape-for-regex" as="xs:string">
+    <xsl:param name="arg" as="xs:string?"/>
+    <xsl:sequence select="replace($arg,'(\.|\[|\]|\\|\||\-|\^|\$|\?|\*|\+|\{|\}|\(|\))','\\$1')"/>
+  </xsl:function>
+  <xsl:function name="e:get-ordinal" as="xs:string">
+    <xsl:param name="value" as="xs:integer?"/>
+    <xsl:if test="translate(string($value), '0123456789', '') = '' and number($value) &gt; 0">
+      <xsl:variable name="mod100" select="$value mod 100"/>
+      <xsl:variable name="mod10" select="$value mod 10"/>
+      <xsl:choose>
+        <xsl:when test="$mod100 = 11 or $mod100 = 12 or $mod100 = 13">
+          <xsl:value-of select="concat($value,'th')"/>
+        </xsl:when>
+        <xsl:when test="$mod10 = 1">
+          <xsl:value-of select="concat($value,'st')"/>
+        </xsl:when>
+        <xsl:when test="$mod10 = 2">
+          <xsl:value-of select="concat($value,'nd')"/>
+        </xsl:when>
+        <xsl:when test="$mod10 = 3">
+          <xsl:value-of select="concat($value,'rd')"/>
+        </xsl:when>
+        <xsl:otherwise>
+          <xsl:value-of select="concat($value,'th')"/>
+        </xsl:otherwise>
+      </xsl:choose>
+    </xsl:if>
+  </xsl:function>
+  <let name="org-regex" value="'b\.\p{Zs}?subtilis|bacillus\p{Zs}?subtilis|d\.\p{Zs}?melanogaster|drosophila\p{Zs}?melanogaster|e\.\p{Zs}?coli|escherichia\p{Zs}?coli|s\.\p{Zs}?pombe|schizosaccharomyces\p{Zs}?pombe|s\.\p{Zs}?cerevisiae|saccharomyces\p{Zs}?cerevisiae|c\.\p{Zs}?elegans|caenorhabditis\p{Zs}?elegans|a\.\p{Zs}?thaliana|arabidopsis\p{Zs}?thaliana|m\.\p{Zs}?thermophila|myceliophthora\p{Zs}?thermophila|dictyostelium|p\.\p{Zs}?falciparum|plasmodium\p{Zs}?falciparum|s\.\p{Zs}?enterica|salmonella\p{Zs}?enterica|s\.\p{Zs}?pyogenes|streptococcus\p{Zs}?pyogenes|p\.\p{Zs}?dumerilii|platynereis\p{Zs}?dumerilii|p\.\p{Zs}?cynocephalus|papio\p{Zs}?cynocephalus|o\.\p{Zs}?fasciatus|oncopeltus\p{Zs}?fasciatus|n\.\p{Zs}?crassa|neurospora\p{Zs}?crassa|c\.\p{Zs}?intestinalis|ciona\p{Zs}?intestinalis|e\.\p{Zs}?cuniculi|encephalitozoon\p{Zs}?cuniculi|h\.\p{Zs}?salinarum|halobacterium\p{Zs}?salinarum|s\.\p{Zs}?solfataricus|sulfolobus\p{Zs}?solfataricus|s\.\p{Zs}?mediterranea|schmidtea\p{Zs}?mediterranea|s\.\p{Zs}?rosetta|salpingoeca\p{Zs}?rosetta|n\.\p{Zs}?vectensis|nematostella\p{Zs}?vectensis|s\.\p{Zs}?aureus|staphylococcus\p{Zs}?aureus|v\.\p{Zs}?cholerae|vibrio\p{Zs}?cholerae|t\.\p{Zs}?thermophila|tetrahymena\p{Zs}?thermophila|c\.\p{Zs}?reinhardtii|chlamydomonas\p{Zs}?reinhardtii|n\.\p{Zs}?attenuata|nicotiana\p{Zs}?attenuata|e\.\p{Zs}?carotovora|erwinia\p{Zs}?carotovora|e\.\p{Zs}?faecalis|h\.\p{Zs}?sapiens|homo\p{Zs}?sapiens|c\.\p{Zs}?trachomatis|chlamydia\p{Zs}?trachomatis|enterococcus\p{Zs}?faecalis|x\.\p{Zs}?laevis|xenopus\p{Zs}?laevis|x\.\p{Zs}?tropicalis|xenopus\p{Zs}?tropicalis|m\.\p{Zs}?musculus|mus\p{Zs}?musculus|d\.\p{Zs}?immigrans|drosophila\p{Zs}?immigrans|d\.\p{Zs}?subobscura|drosophila\p{Zs}?subobscura|d\.\p{Zs}?affinis|drosophila\p{Zs}?affinis|d\.\p{Zs}?obscura|drosophila\p{Zs}?obscura|f\.\p{Zs}?tularensis|francisella\p{Zs}?tularensis|p\.\p{Zs}?plantaginis|podosphaera\p{Zs}?plantaginis|p\.\p{Zs}?lanceolata|plantago\p{Zs}?lanceolata|m\.\p{Zs}?trossulus|mytilus\p{Zs}?trossulus|m\.\p{Zs}?edulis|mytilus\p{Zs}?edulis|m\.\p{Zs}?chilensis|mytilus\p{Zs}?chilensis|u\.\p{Zs}?maydis|ustilago\p{Zs}?maydis|p\.\p{Zs}?knowlesi|plasmodium\p{Zs}?knowlesi|p\.\p{Zs}?aeruginosa|pseudomonas\p{Zs}?aeruginosa|t\.\p{Zs}?brucei|trypanosoma\p{Zs}?brucei|t\.\p{Zs}?gondii|toxoplasma\p{Zs}?gondii|d\.\p{Zs}?rerio|danio\p{Zs}?rerio|yimenosaurus|lesothosaurus\p{Zs}?diagnosticus|l\.\p{Zs}?diagnosticus|scelidosaurus\p{Zs}?harrisonii|s\.\p{Zs}?harrisonii|haya\p{Zs}?griva|h\.\p{Zs}?griva|polacanthus\p{Zs}?foxii|p\.\p{Zs}?foxii|scutellosaurus\p{Zs}?lawleri|s\.\p{Zs}?lawleri|saichania\p{Zs}?chulsanensis|s\.\p{Zs}?chulsanensis|gargoyleosaurus\p{Zs}?parkpinorum|g\.\p{Zs}?parkpinorum|europelta\p{Zs}?carbonensis|e\.\p{Zs}?carbonensis|stegosaurus\p{Zs}?stenops|s\.\p{Zs}?stenops|pinacosaurus\p{Zs}?grangeri|p\.\p{Zs}?grangeri|tatisaurus\p{Zs}?oehleri|t\.\p{Zs}?oehleri|hungarosaurus\p{Zs}?tormai|h\.\p{Zs}?tormai|bienosaurus\p{Zs}?lufengensis|b\.\p{Zs}?lufengensis|fabrosaurus\p{Zs}?australis|f\.\p{Zs}?australis|chinshakiangosaurus\p{Zs}?chunghoensis|c\.\p{Zs}?chunghoensis|euoplocephalus\p{Zs}?tutus|e\.\p{Zs}?tutus|drosophila|xenopus|salmonella|g\.\p{Zs}?beringei|gorilla\p{Zs}?beringei|m\.\p{Zs}?assamensis|macaca\p{Zs}?assamensis|m\.\p{Zs}?fuscata|macaca\p{Zs}?fuscata|m\.\p{Zs}?mulatta|macaca\p{Zs}?mulatta|m\.\p{Zs}?nemestrina|macaca\p{Zs}?nemestrina|m\.\p{Zs}?sphinx|mandrillus\p{Zs}?sphinx|p\.\p{Zs}?anubis|papio\p{Zs}?anubis|p\.\p{Zs}?hamadryas|papio\p{Zs}?hamadryas|p\.\p{Zs}?paniscus|pan\p{Zs}?paniscus|p\.\p{Zs}?troglodytes|pan\p{Zs}?troglodytes'"/>
+  <let name="sec-title-regex" value="string-join(     for $x in tokenize($org-regex,'\|')     return concat('^',$x,'$')     ,'|')"/>
+  <xsl:function name="e:org-conform" as="xs:string">
+  <xsl:param name="s" as="xs:string"/>
+  <xsl:choose>
+    <xsl:when test="matches($s,'b\.\p{Zs}?subtilis')">
+      <xsl:value-of select="'B. subtilis'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'bacillus\p{Zs}?subtilis')">
+      <xsl:value-of select="'Bacillus subtilis'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'d\.\p{Zs}?melanogaster')">
+      <xsl:value-of select="'D. melanogaster'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'drosophila\p{Zs}?melanogaster')">
+      <xsl:value-of select="'Drosophila melanogaster'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'e\.\p{Zs}?coli')">
+      <xsl:value-of select="'E. coli'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'escherichia\p{Zs}?coli')">
+      <xsl:value-of select="'Escherichia coli'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'s\.\p{Zs}?pombe')">
+      <xsl:value-of select="'S. pombe'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'schizosaccharomyces\p{Zs}?pombe')">
+      <xsl:value-of select="'Schizosaccharomyces pombe'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'s\.\p{Zs}?cerevisiae')">
+      <xsl:value-of select="'S. cerevisiae'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'saccharomyces\p{Zs}?cerevisiae')">
+      <xsl:value-of select="'Saccharomyces cerevisiae'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'c\.\p{Zs}?elegans')">
+      <xsl:value-of select="'C. elegans'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'caenorhabditis\p{Zs}?elegans')">
+      <xsl:value-of select="'Caenorhabditis elegans'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'a\.\p{Zs}?thaliana')">
+      <xsl:value-of select="'A. thaliana'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'arabidopsis\p{Zs}?thaliana')">
+      <xsl:value-of select="'Arabidopsis thaliana'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'m\.\p{Zs}?thermophila')">
+      <xsl:value-of select="'M. thermophila'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'myceliophthora\p{Zs}?thermophila')">
+      <xsl:value-of select="'Myceliophthora thermophila'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'dictyostelium')">
+      <xsl:value-of select="'Dictyostelium'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'p\.\p{Zs}?falciparum')">
+      <xsl:value-of select="'P. falciparum'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'plasmodium\p{Zs}?falciparum')">
+      <xsl:value-of select="'Plasmodium falciparum'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'s\.\p{Zs}?enterica')">
+      <xsl:value-of select="'S. enterica'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'salmonella\p{Zs}?enterica')">
+      <xsl:value-of select="'Salmonella enterica'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'s\.\p{Zs}?pyogenes')">
+      <xsl:value-of select="'S. pyogenes'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'streptococcus\p{Zs}?pyogenes')">
+      <xsl:value-of select="'Streptococcus pyogenes'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'p\.\p{Zs}?dumerilii')">
+      <xsl:value-of select="'P. dumerilii'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'platynereis\p{Zs}?dumerilii')">
+      <xsl:value-of select="'Platynereis dumerilii'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'p\.\p{Zs}?cynocephalus')">
+      <xsl:value-of select="'P. cynocephalus'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'papio\p{Zs}?cynocephalus')">
+      <xsl:value-of select="'Papio cynocephalus'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'o\.\p{Zs}?fasciatus')">
+      <xsl:value-of select="'O. fasciatus'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'oncopeltus\p{Zs}?fasciatus')">
+      <xsl:value-of select="'Oncopeltus fasciatus'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'n\.\p{Zs}?crassa')">
+      <xsl:value-of select="'N. crassa'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'neurospora\p{Zs}?crassa')">
+      <xsl:value-of select="'Neurospora crassa'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'c\.\p{Zs}?intestinalis')">
+      <xsl:value-of select="'C. intestinalis'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'ciona\p{Zs}?intestinalis')">
+      <xsl:value-of select="'Ciona intestinalis'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'e\.\p{Zs}?cuniculi')">
+      <xsl:value-of select="'E. cuniculi'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'encephalitozoon\p{Zs}?cuniculi')">
+      <xsl:value-of select="'Encephalitozoon cuniculi'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'h\.\p{Zs}?salinarum')">
+      <xsl:value-of select="'H. salinarum'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'halobacterium\p{Zs}?salinarum')">
+      <xsl:value-of select="'Halobacterium salinarum'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'s\.\p{Zs}?solfataricus')">
+      <xsl:value-of select="'S. solfataricus'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'sulfolobus\p{Zs}?solfataricus')">
+      <xsl:value-of select="'Sulfolobus solfataricus'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'s\.\p{Zs}?mediterranea')">
+      <xsl:value-of select="'S. mediterranea'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'schmidtea\p{Zs}?mediterranea')">
+      <xsl:value-of select="'Schmidtea mediterranea'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'s\.\p{Zs}?rosetta')">
+      <xsl:value-of select="'S. rosetta'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'salpingoeca\p{Zs}?rosetta')">
+      <xsl:value-of select="'Salpingoeca rosetta'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'n\.\p{Zs}?vectensis')">
+      <xsl:value-of select="'N. vectensis'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'nematostella\p{Zs}?vectensis')">
+      <xsl:value-of select="'Nematostella vectensis'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'s\.\p{Zs}?aureus')">
+      <xsl:value-of select="'S. aureus'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'staphylococcus\p{Zs}?aureus')">
+      <xsl:value-of select="'Staphylococcus aureus'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'v\.\p{Zs}?cholerae')">
+      <xsl:value-of select="'V. cholerae'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'vibrio\p{Zs}?cholerae')">
+      <xsl:value-of select="'Vibrio cholerae'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'t\.\p{Zs}?thermophila')">
+      <xsl:value-of select="'T. thermophila'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'tetrahymena\p{Zs}?thermophila')">
+      <xsl:value-of select="'Tetrahymena thermophila'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'c\.\p{Zs}?reinhardtii')">
+      <xsl:value-of select="'C. reinhardtii'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'chlamydomonas\p{Zs}?reinhardtii')">
+      <xsl:value-of select="'Chlamydomonas reinhardtii'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'n\.\p{Zs}?attenuata')">
+      <xsl:value-of select="'N. attenuata'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'nicotiana\p{Zs}?attenuata')">
+      <xsl:value-of select="'Nicotiana attenuata'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'e\.\p{Zs}?carotovora')">
+      <xsl:value-of select="'E. carotovora'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'erwinia\p{Zs}?carotovora')">
+      <xsl:value-of select="'Erwinia carotovora'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'e\.\p{Zs}?faecalis')">
+      <xsl:value-of select="'E. faecalis'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'h\.\p{Zs}?sapiens')">
+      <xsl:value-of select="'H. sapiens'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'homo\p{Zs}?sapiens')">
+      <xsl:value-of select="'Homo sapiens'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'c\.\p{Zs}?trachomatis')">
+      <xsl:value-of select="'C. trachomatis'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'chlamydia\p{Zs}?trachomatis')">
+      <xsl:value-of select="'Chlamydia trachomatis'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'enterococcus\p{Zs}?faecalis')">
+      <xsl:value-of select="'Enterococcus faecalis'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'x\.\p{Zs}?laevis')">
+      <xsl:value-of select="'X. laevis'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'xenopus\p{Zs}?laevis')">
+      <xsl:value-of select="'Xenopus laevis'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'x\.\p{Zs}?tropicalis')">
+      <xsl:value-of select="'X. tropicalis'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'xenopus\p{Zs}?tropicalis')">
+      <xsl:value-of select="'Xenopus tropicalis'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'m\.\p{Zs}?musculus')">
+      <xsl:value-of select="'M. musculus'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'mus\p{Zs}?musculus')">
+      <xsl:value-of select="'Mus musculus'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'d\.\p{Zs}?immigrans')">
+      <xsl:value-of select="'D. immigrans'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'drosophila\p{Zs}?immigrans')">
+      <xsl:value-of select="'Drosophila immigrans'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'d\.\p{Zs}?subobscura')">
+      <xsl:value-of select="'D. subobscura'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'drosophila\p{Zs}?subobscura')">
+      <xsl:value-of select="'Drosophila subobscura'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'d\.\p{Zs}?affinis')">
+      <xsl:value-of select="'D. affinis'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'drosophila\p{Zs}?affinis')">
+      <xsl:value-of select="'Drosophila affinis'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'d\.\p{Zs}?obscura')">
+      <xsl:value-of select="'D. obscura'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'drosophila\p{Zs}?obscura')">
+      <xsl:value-of select="'Drosophila obscura'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'f\.\p{Zs}?tularensis')">
+      <xsl:value-of select="'F. tularensis'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'francisella\p{Zs}?tularensis')">
+      <xsl:value-of select="'Francisella tularensis'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'p\.\p{Zs}?plantaginis')">
+      <xsl:value-of select="'P. plantaginis'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'podosphaera\p{Zs}?plantaginis')">
+      <xsl:value-of select="'Podosphaera plantaginis'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'p\.\p{Zs}?lanceolata')">
+      <xsl:value-of select="'P. lanceolata'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'plantago\p{Zs}?lanceolata')">
+      <xsl:value-of select="'Plantago lanceolata'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'m\.\p{Zs}?trossulus')">
+      <xsl:value-of select="'M. trossulus'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'mytilus\p{Zs}?trossulus')">
+      <xsl:value-of select="'Mytilus trossulus'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'m\.\p{Zs}?edulis')">
+      <xsl:value-of select="'M. edulis'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'mytilus\p{Zs}?edulis')">
+      <xsl:value-of select="'Mytilus edulis'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'m\.\p{Zs}?chilensis')">
+      <xsl:value-of select="'M. chilensis'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'mytilus\p{Zs}?chilensis')">
+      <xsl:value-of select="'Mytilus chilensis'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'u\.\p{Zs}?maydis')">
+      <xsl:value-of select="'U. maydis'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'ustilago\p{Zs}?maydis')">
+      <xsl:value-of select="'Ustilago maydis'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'p\.\p{Zs}?knowlesi')">
+      <xsl:value-of select="'P. knowlesi'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'plasmodium\p{Zs}?knowlesi')">
+      <xsl:value-of select="'Plasmodium knowlesi'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'p\.\p{Zs}?aeruginosa')">
+      <xsl:value-of select="'P. aeruginosa'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'pseudomonas\p{Zs}?aeruginosa')">
+      <xsl:value-of select="'Pseudomonas aeruginosa'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'t\.\p{Zs}?brucei')">
+      <xsl:value-of select="'T. brucei'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'trypanosoma\p{Zs}?brucei')">
+      <xsl:value-of select="'Trypanosoma brucei'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'caulobacter\p{Zs}?crescentus')">
+      <xsl:value-of select="'Caulobacter crescentus'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'c\.\p{Zs}?crescentus')">
+      <xsl:value-of select="'C. crescentus'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'agrobacterium\p{Zs}?tumefaciens')">
+      <xsl:value-of select="'Agrobacterium tumefaciens'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'a\.\p{Zs}?tumefaciens')">
+      <xsl:value-of select="'A. tumefaciens'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'t\.\p{Zs}?gondii')">
+      <xsl:value-of select="'T. gondii'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'toxoplasma\p{Zs}?gondii')">
+      <xsl:value-of select="'Toxoplasma gondii'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'d\.\p{Zs}?rerio')">
+      <xsl:value-of select="'D. rerio'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'danio\p{Zs}?rerio')">
+      <xsl:value-of select="'Danio rerio'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'drosophila')">
+      <xsl:value-of select="'Drosophila'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'yimenosaurus')">
+      <xsl:value-of select="'Yimenosaurus'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'lesothosaurus\p{Zs}?diagnosticus')">
+      <xsl:value-of select="'Lesothosaurus diagnosticus'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'l.\p{Zs}?diagnosticus')">
+      <xsl:value-of select="'L. diagnosticus'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'scelidosaurus\p{Zs}?harrisonii')">
+      <xsl:value-of select="'Scelidosaurus harrisonii'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'s.\p{Zs}?harrisonii')">
+      <xsl:value-of select="'S. harrisonii'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'haya\p{Zs}?griva')">
+      <xsl:value-of select="'Haya griva'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'h.\p{Zs}?griva')">
+      <xsl:value-of select="'H. griva'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'polacanthus\p{Zs}?foxii')">
+      <xsl:value-of select="'Polacanthus foxii'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'p.\p{Zs}?foxii')">
+      <xsl:value-of select="'P. foxii'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'scutellosaurus\p{Zs}?lawleri')">
+      <xsl:value-of select="'Scutellosaurus lawleri'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'s.\p{Zs}?lawleri')">
+      <xsl:value-of select="'S. lawleri'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'saichania\p{Zs}?chulsanensis')">
+      <xsl:value-of select="'Saichania chulsanensis'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'s.\p{Zs}?chulsanensis')">
+      <xsl:value-of select="'S. chulsanensis'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'gargoyleosaurus\p{Zs}?parkpinorum')">
+      <xsl:value-of select="'Gargoyleosaurus parkpinorum'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'g.\p{Zs}?parkpinorum')">
+      <xsl:value-of select="'G. parkpinorum'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'europelta\p{Zs}?carbonensis')">
+      <xsl:value-of select="'Europelta carbonensis'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'e.\p{Zs}?carbonensis')">
+      <xsl:value-of select="'E. carbonensis'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'stegosaurus\p{Zs}?stenops')">
+      <xsl:value-of select="'Stegosaurus stenops'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'s.\p{Zs}?stenops')">
+      <xsl:value-of select="'S. stenops'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'pinacosaurus\p{Zs}?grangeri')">
+      <xsl:value-of select="'Pinacosaurus grangeri'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'p.\p{Zs}?grangeri')">
+      <xsl:value-of select="'P. grangeri'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'tatisaurus\p{Zs}?oehleri')">
+      <xsl:value-of select="'Tatisaurus oehleri'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'t.\p{Zs}?oehleri')">
+      <xsl:value-of select="'T. oehleri'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'hungarosaurus\p{Zs}?tormai')">
+      <xsl:value-of select="'Hungarosaurus tormai'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'h.\p{Zs}?tormai')">
+      <xsl:value-of select="'H. tormai'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'lesothosaurus\p{Zs}?diagnosticus')">
+      <xsl:value-of select="'Lesothosaurus diagnosticus'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'l.\p{Zs}?diagnosticus')">
+      <xsl:value-of select="'L. diagnosticus'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'bienosaurus\p{Zs}?lufengensis')">
+      <xsl:value-of select="'Bienosaurus lufengensis'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'b.\p{Zs}?lufengensis')">
+      <xsl:value-of select="'B. lufengensis'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'fabrosaurus\p{Zs}?australis')">
+      <xsl:value-of select="'Fabrosaurus australis'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'f.\p{Zs}?australis')">
+      <xsl:value-of select="'F. australis'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'chinshakiangosaurus\p{Zs}?chunghoensis')">
+      <xsl:value-of select="'Chinshakiangosaurus chunghoensis'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'c.\p{Zs}?chunghoensis')">
+      <xsl:value-of select="'C. chunghoensis'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'euoplocephalus\p{Zs}?tutus')">
+      <xsl:value-of select="'Euoplocephalus tutus'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'e.\p{Zs}?tutus')">
+      <xsl:value-of select="'E. tutus'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'g\.\p{Zs}?beringei')">
+      <xsl:value-of select="'G. beringei'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'gorilla\p{Zs}?beringei')">
+      <xsl:value-of select="'Gorilla beringei'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'m\.\p{Zs}?assamensis')">
+      <xsl:value-of select="'M. assamensis'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'macaca\p{Zs}?assamensis')">
+      <xsl:value-of select="'Macaca assamensis'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'m\.\p{Zs}?fuscata')">
+      <xsl:value-of select="'M. fuscata'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'macaca\p{Zs}?fuscata')">
+      <xsl:value-of select="'Macaca fuscata'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'m\.\p{Zs}?mulatta')">
+      <xsl:value-of select="'M. mulatta'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'macaca\p{Zs}?mulatta')">
+      <xsl:value-of select="'Macaca mulatta'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'m\.\p{Zs}?nemestrina')">
+      <xsl:value-of select="'M. nemestrina'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'macaca\p{Zs}?nemestrina')">
+      <xsl:value-of select="'Macaca nemestrina'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'m\.\p{Zs}?sphinx')">
+      <xsl:value-of select="'M. sphinx'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'mandrillus\p{Zs}?sphinx')">
+      <xsl:value-of select="'Mandrillus sphinx'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'p\.\p{Zs}?anubis')">
+      <xsl:value-of select="'P. anubis'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'papio\p{Zs}?anubis')">
+      <xsl:value-of select="'Papio anubis'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'p\.\p{Zs}?hamadryas')">
+      <xsl:value-of select="'P. hamadryas'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'papio\p{Zs}?hamadryas')">
+      <xsl:value-of select="'Papio hamadryas'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'p\.\p{Zs}?paniscus')">
+      <xsl:value-of select="'P. paniscus'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'pan\p{Zs}?paniscus')">
+      <xsl:value-of select="'Pan paniscus'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'p\.\p{Zs}?troglodytes')">
+      <xsl:value-of select="'P. troglodytes'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'pan\p{Zs}?troglodytes')">
+      <xsl:value-of select="'Pan troglodytes'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'xenopus')">
+      <xsl:value-of select="'Xenopus'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'salmonella')">
+      <xsl:value-of select="'Salmonella'"/>
+    </xsl:when>
+    <xsl:otherwise>
+      <xsl:value-of select="'undefined'"/>
+    </xsl:otherwise>
+  </xsl:choose>
+</xsl:function>
+  <xsl:function name="e:code-check">
+    <xsl:param name="s" as="xs:string"/>
+    <xsl:element name="code">
+      <xsl:if test="contains($s,'github')">
+        <xsl:element name="match">
+        <xsl:value-of select="'github '"/>
+        </xsl:element>
+      </xsl:if>
+      <xsl:if test="contains($s,'gitlab')">
+        <xsl:element name="match">
+        <xsl:value-of select="'gitlab '"/>
+        </xsl:element>
+      </xsl:if>
+      <xsl:if test="contains($s,'git.exeter.ac.uk')">
+        <xsl:element name="match">
+          <xsl:value-of select="'git.exeter.ac.uk '"/>
+        </xsl:element>
+      </xsl:if>
+      <xsl:if test="contains($s,'codeplex')">
+        <xsl:element name="match">
+        <xsl:value-of select="'codeplex '"/>
+        </xsl:element>
+      </xsl:if>
+      <xsl:if test="contains($s,'sourceforge')">
+        <xsl:element name="match">
+        <xsl:value-of select="'sourceforge '"/>
+        </xsl:element>
+      </xsl:if>
+      <xsl:if test="contains($s,'bitbucket')">
+        <xsl:element name="match">
+        <xsl:value-of select="'bitbucket '"/>
+        </xsl:element>
+      </xsl:if>
+      <xsl:if test="contains($s,'assembla ')">
+        <xsl:element name="match">
+        <xsl:value-of select="'assembla '"/>
+        </xsl:element>
+      </xsl:if>
+    </xsl:element>
+  </xsl:function>
+  <xsl:function name="e:get-xrefs">
+    <xsl:param name="article"/>
+    <xsl:param name="object-id"/>
+    <xsl:param name="object-type"/>
+    <xsl:variable name="object-no" select="replace($object-id,'[^0-9]','')"/>
+    <xsl:element name="matches">
+      <xsl:for-each select="$article//xref[(@ref-type=$object-type) and not(ancestor::caption)]">
+        <xsl:variable name="rid-no" select="replace(./@rid,'[^0-9]','')"/>
+        <xsl:variable name="text-no" select="tokenize(normalize-space(replace(.,'[^0-9]',' ')),'\p{Zs}')[last()]"/>
+        <xsl:choose>
+          <xsl:when test="./@rid = $object-id">
+            <xsl:element name="match">
+              <xsl:attribute name="sec-id">
+                <xsl:value-of select="./ancestor::sec[1]/@id"/>
+              </xsl:attribute>
+              <xsl:value-of select="self::*"/>
+            </xsl:element>
+          </xsl:when>
+          <xsl:when test="contains(./@rid,'app')"/>
+          <xsl:when test="($rid-no lt $object-no) and (./following-sibling::text()[1] = '–') and (./following-sibling::*[1]/name()='xref') and (number(replace(replace(./following-sibling::xref[1]/@rid,'\-','.'),'[a-z]','')) gt number($object-no))">
+            <xsl:element name="match">
+              <xsl:attribute name="sec-id">
+                <xsl:value-of select="./ancestor::sec[1]/@id"/>
+              </xsl:attribute>
+              <xsl:value-of select="self::*"/>
+            </xsl:element>
+          </xsl:when>
+          <xsl:when test="($rid-no lt $object-no) and contains(.,$object-no) and (contains(.,'Videos') or contains(.,'videos') and contains(.,'–'))">
+            <xsl:element name="match">
+              <xsl:attribute name="sec-id">
+                <xsl:value-of select="./ancestor::sec[1]/@id"/>
+              </xsl:attribute>
+              <xsl:value-of select="self::*"/>
+            </xsl:element>
+          </xsl:when>
+          <xsl:when test="($rid-no lt $object-no) and (contains(.,'Videos') or contains(.,'videos') and contains(.,'—')) and ($text-no gt $object-no)">
+            <xsl:element name="match">
+              <xsl:attribute name="sec-id">
+                <xsl:value-of select="./ancestor::sec[1]/@id"/>
+              </xsl:attribute>
+              <xsl:value-of select="self::*"/>
+            </xsl:element>
+          </xsl:when>
+          <xsl:otherwise/>
+        </xsl:choose>
+      </xsl:for-each>
+    </xsl:element>
+  </xsl:function>
+  <xsl:function name="e:get-iso-pub-date">
+    <xsl:param name="element"/>
+    <xsl:choose>
+      <xsl:when test="$element/ancestor-or-self::article//article-meta/pub-date[(@date-type='publication') or (@date-type='pub')]/month">
+        <xsl:variable name="pub-date" select="$element/ancestor-or-self::article//article-meta/pub-date[(@date-type='publication') or (@date-type='pub')]"/>
+        <xsl:value-of select="concat($pub-date/year,'-',$pub-date/month,'-',$pub-date/day)"/>
+      </xsl:when>
+      <xsl:otherwise/>
+    </xsl:choose>
+  </xsl:function>
+  <xsl:function name="e:get-copyright-holder">
+    <xsl:param name="contrib-group"/>
+    <xsl:variable name="author-count" select="count($contrib-group/contrib[@contrib-type='author'])"/>
+    <xsl:choose>
+      <xsl:when test="$author-count lt 1"/>
+      <xsl:when test="$author-count = 1">
+        <xsl:choose>
+          <xsl:when test="$contrib-group/contrib[@contrib-type='author']/collab">
+            <xsl:value-of select="$contrib-group/contrib[@contrib-type='author']/collab[1]/text()[1]"/>
+          </xsl:when>
+          <xsl:otherwise>
+            <xsl:value-of select="$contrib-group/contrib[@contrib-type='author']/name[1]/surname[1]"/>
+          </xsl:otherwise>
+        </xsl:choose>
+      </xsl:when>
+      <xsl:when test="$author-count = 2">
+        <xsl:choose>
+          <xsl:when test="$contrib-group/contrib[@contrib-type='author']/collab">
+            <xsl:choose>
+              <xsl:when test="$contrib-group/contrib[@contrib-type='author'][1]/collab and $contrib-group/contrib[@contrib-type='author'][2]/collab">
+                <xsl:value-of select="concat($contrib-group/contrib[@contrib-type='author']/collab[1]/text()[1],' and ',$contrib-group/contrib[@contrib-type='author']/collab[2]/text()[1])"/>
+              </xsl:when>
+              <xsl:when test="$contrib-group/contrib[@contrib-type='author'][1]/collab">
+                <xsl:value-of select="concat($contrib-group/contrib[@contrib-type='author'][1]/collab[1]/text()[1],' and ',$contrib-group/contrib[@contrib-type='author'][2]/name[1]/surname[1])"/>
+              </xsl:when>
+              <xsl:otherwise>
+                <xsl:value-of select="concat($contrib-group/contrib[@contrib-type='author'][1]/name[1]/surname[1],' and ',$contrib-group/contrib[@contrib-type='author'][2]/collab[1]/text()[1])"/>
+              </xsl:otherwise>
+            </xsl:choose>
+          </xsl:when>
+          <xsl:otherwise>
+            <xsl:value-of select="concat($contrib-group/contrib[@contrib-type='author'][1]/name[1]/surname[1],' and ',$contrib-group/contrib[@contrib-type='author'][2]/name[1]/surname[1])"/>
+          </xsl:otherwise>
+        </xsl:choose>
+      </xsl:when>
+      
+      <xsl:otherwise>
+        <xsl:variable name="is-equal-contrib" select="if ($contrib-group/contrib[@contrib-type='author'][1]/@equal-contrib='yes') then true() else false()"/>
+        <xsl:choose>
+          <xsl:when test="$is-equal-contrib">
+            
+            <xsl:variable name="equal-contrib-rid" select="$contrib-group/contrib[@contrib-type='author'][1]/xref[starts-with(@rid,'equal-contrib')]/@rid"/>
+            <xsl:variable name="first-authors" select="$contrib-group/contrib[@contrib-type='author' and @equal-contrib='yes' and xref[@rid=$equal-contrib-rid] and not(preceding-sibling::contrib[not(xref[@rid=$equal-contrib-rid])])]"/>
+            <xsl:choose>
+              
+              <xsl:when test="$author-count = 3 and count($first-authors) = 3">
+                <xsl:value-of select="concat(e:get-surname($contrib-group/contrib[@contrib-type='author'][1]),                   ', ',                   e:get-surname($contrib-group/contrib[@contrib-type='author'][2]),                   ' and ',                   e:get-surname($contrib-group/contrib[@contrib-type='author'][3]))"/>
+              </xsl:when>
+              
+              <xsl:when test="count($first-authors) gt 3">
+                <xsl:variable name="first-auth-string" select="string-join(for $auth in $contrib-group/contrib[@contrib-type='author'][position() lt 4] return e:get-surname($auth),', ')"/>
+                <xsl:value-of select="concat($first-auth-string,' et al')"/>
+              </xsl:when>
+              
+              <xsl:otherwise>
+                <xsl:variable name="first-auth-string" select="string-join(for $auth in $first-authors return e:get-surname($auth),', ')"/>
+                <xsl:value-of select="concat($first-auth-string,' et al')"/>
+              </xsl:otherwise>
+            </xsl:choose>
+          </xsl:when>
+          
+          <xsl:otherwise>
+            <xsl:value-of select="concat(e:get-surname($contrib-group/contrib[@contrib-type='author'][1]),' et al')"/>
+          </xsl:otherwise>
+        </xsl:choose>
+      </xsl:otherwise>
+    </xsl:choose>
+  </xsl:function>
+  <xsl:function name="e:get-surname" as="text()">
+    <xsl:param name="contrib"/>
+    <xsl:choose>
+      <xsl:when test="$contrib/collab">
+        <xsl:value-of select="$contrib/collab[1]/text()[1]"/>
+      </xsl:when>
+      <xsl:otherwise>
+        <xsl:value-of select="$contrib//name[1]/surname[1]"/>
+      </xsl:otherwise>
+    </xsl:choose>
+  </xsl:function>
+  <xsl:function name="e:insight-box" as="element()">
+    <xsl:param name="box" as="xs:string"/>
+    <xsl:param name="cite-text" as="xs:string"/>
+    <xsl:variable name="box-text" select="substring-after(substring-after($box,'article'),' ')"/> 
+    
+    <xsl:element name="list">
+      <xsl:for-each select="tokenize($cite-text,'\p{Zs}')">
+        <xsl:choose>
+          <xsl:when test="contains($box-text,.)"/>
+          <xsl:otherwise>
+            <xsl:element name="item">
+              <xsl:attribute name="type">cite</xsl:attribute>
+              <xsl:value-of select="."/>
+            </xsl:element>
+          </xsl:otherwise>
+        </xsl:choose>
+      </xsl:for-each>
+      <xsl:for-each select="tokenize($box-text,'\p{Zs}')">
+        <xsl:choose>
+          <xsl:when test="contains($cite-text,.)"/>
+          <xsl:otherwise>
+            <xsl:element name="item">
+              <xsl:attribute name="type">box</xsl:attribute>
+              <xsl:value-of select="."/>
+            </xsl:element>
+          </xsl:otherwise>
+        </xsl:choose>
+      </xsl:for-each>
+    </xsl:element>
+  </xsl:function>
+  <let name="latin-regex" value="'in\p{Zs}+vitro|ex\p{Zs}+vitro|in\p{Zs}+vivo|ex\p{Zs}+vivo|a\p{Zs}+priori|a\p{Zs}+posteriori|de\p{Zs}+novo|in\p{Zs}+utero|in\p{Zs}+natura|in\p{Zs}+situ|in\p{Zs}+planta|in\p{Zs}+cellulo|rete\p{Zs}+mirabile|nomen\p{Zs}+novum| sensu |ad\p{Zs}+libitum|in\p{Zs}+ovo'"/>
+  <xsl:function name="e:get-latin-terms" as="element()">
+    <xsl:param name="article" as="element()"/>
+    <xsl:param name="regex" as="xs:string"/>
+    
+    <xsl:variable name="roman-text" select="lower-case(       string-join(for $x in $article/*[local-name() = 'body' or local-name() = 'back']//*       return       if ($x/ancestor-or-self::sec[@sec-type='additional-information']) then ()       else if ($x/ancestor-or-self::ref-list) then ()       else if ($x/local-name() = 'italic') then ()       else $x/text(),' '))"/>
+    <xsl:variable name="italic-text" select="lower-case(string-join($article//*:italic[not(ancestor::ref-list) and not(ancestor::sec[@sec-type='additional-information'])],' '))"/>
+    
+    
+    <xsl:element name="result">
+      <xsl:choose>
+        <xsl:when test="matches($roman-text,$regex)">
+          <xsl:element name="list">
+            <xsl:attribute name="list-type">roman</xsl:attribute>
+            <xsl:for-each select="tokenize($regex,'\|')">
+              <xsl:variable name="display" select="replace(replace(.,'\\p\{Zs\}\+',' '),'^ | $','')"/>
+              <xsl:element name="match">
+                <xsl:attribute name="count">
+                  <xsl:value-of select="count(tokenize($roman-text,.)) - 1"/>
+                </xsl:attribute>
+                <xsl:value-of select="$display"/>
+              </xsl:element>
+            </xsl:for-each>
+          </xsl:element>
+        </xsl:when>
+        <xsl:otherwise>
+          <xsl:element name="list">
+            <xsl:attribute name="list-type">roman</xsl:attribute>
+          </xsl:element>
+        </xsl:otherwise>
+      </xsl:choose>
+      <xsl:choose>
+        <xsl:when test="matches($italic-text,$regex)">
+          <xsl:element name="list">
+            <xsl:attribute name="list-type">italic</xsl:attribute>
+            <xsl:for-each select="tokenize($regex,'\|')">
+              <xsl:variable name="display" select="replace(.,'\\p\{Zs\}\+',' ')"/>
+              <xsl:element name="match">
+                <xsl:attribute name="count">
+                  <xsl:value-of select="count(tokenize($italic-text,.)) - 1"/>
+                </xsl:attribute>
+                <xsl:value-of select="$display"/>
+              </xsl:element>
+            </xsl:for-each>
+          </xsl:element>
+        </xsl:when>
+        <xsl:otherwise>
+          <xsl:element name="list">
+            <xsl:attribute name="list-type">italic</xsl:attribute>
+          </xsl:element>
+        </xsl:otherwise>
+      </xsl:choose>
+    </xsl:element>
+  </xsl:function>
+  <xsl:function name="e:print-latin-terms" as="xs:string">
+    <xsl:param name="list" as="element()"/>
+    <xsl:value-of select="string-join(       for $term in $list//*:match[@count != '0']        return if (number($term/@count) gt 1) then concat($term/@count,' instances of ',$term)       else concat($term/@count,' instance of ',$term)       ,', ')"/>
+  </xsl:function>
+  <xsl:function name="e:list-panels">
+    <xsl:param name="caption" as="xs:string"/>
+    <xsl:element name="list">
+      <xsl:for-each select="tokenize($caption,'\.\p{Zs}+')">
+        <xsl:if test="matches(.,'^[B-K]\p{P}?[A-K]?\.?\p{Zs}+')">
+          <xsl:element name="item">
+            <xsl:attribute name="token">
+              <xsl:value-of select="substring-before(.,' ')"/>
+            </xsl:attribute>
+            <xsl:value-of select="."/>
+          </xsl:element>
+        </xsl:if>
+      </xsl:for-each>
+    </xsl:element>
+  </xsl:function>
+  <xsl:function name="e:get-weekday" as="xs:integer?">
+    <xsl:param name="date" as="xs:anyAtomicType?"/>
+    <xsl:sequence select="       if (empty($date)) then ()       else xs:integer((xs:date($date) - xs:date('1901-01-06')) div xs:dayTimeDuration('P1D')) mod 7       "/>
+  </xsl:function>
+  <xsl:function name="e:line-count" as="xs:integer">
+    <xsl:param name="arg" as="xs:string?"/>
+    
+    <xsl:sequence select="count(tokenize($arg,'(\r\n?|\n\r?)'))"/>
+    
+  </xsl:function>
+  <pattern id="article-metadata">
+    <rule context="pub-date" id="pub-date-tests">
+      <let name="allowed-attributes" value="('publication-format','date-type','iso-8601-date')"/>
+      <assert test="@publication-format" role="error" id="pub-date-test-6">pub-date must have the attribute publication-format.</assert>
+    </rule>
+  </pattern>
+  <pattern id="root-pattern">
+    <rule context="root" id="root-rule">
+      <assert test="descendant::pub-date" role="error" id="pub-date-tests-xspec-assert">pub-date must be present.</assert>
+    </rule>
+  </pattern>
+</schema>
\ No newline at end of file
diff --git a/test/tests/gen/pub-date-tests/pub-date-test-7/fail.xml b/test/tests/gen/pub-date-tests/pub-date-test-7/fail.xml
new file mode 100644
index 0000000000..02ed79f730
--- /dev/null
+++ b/test/tests/gen/pub-date-tests/pub-date-test-7/fail.xml
@@ -0,0 +1,15 @@
+<?oxygen SCHSchema="pub-date-test-7.sch"?>
+<!--Context: pub-date
+Test: assert    @date-type
+Message: pub-date must have the attribute date-type. -->
+<root xmlns:ali="http://www.niso.org/schemas/ali/1.0/" xmlns:mml="http://www.w3.org/1998/Math/MathML" xmlns:xlink="http://www.w3.org/1999/xlink">
+    <article>
+        <article-meta>
+            <pub-date publication-format="electronic">
+                <day>22</day>
+                <month>10</month>
+                <year>2023</year>
+            </pub-date>
+        </article-meta>
+    </article>
+</root>
\ No newline at end of file
diff --git a/test/tests/gen/pub-date-tests/pub-date-test-7/pass.xml b/test/tests/gen/pub-date-tests/pub-date-test-7/pass.xml
new file mode 100644
index 0000000000..3ae95db7b8
--- /dev/null
+++ b/test/tests/gen/pub-date-tests/pub-date-test-7/pass.xml
@@ -0,0 +1,15 @@
+<?oxygen SCHSchema="pub-date-test-7.sch"?>
+<!--Context: pub-date
+Test: assert    @date-type
+Message: pub-date must have the attribute date-type. -->
+<root xmlns:ali="http://www.niso.org/schemas/ali/1.0/" xmlns:mml="http://www.w3.org/1998/Math/MathML" xmlns:xlink="http://www.w3.org/1999/xlink">
+    <article>
+        <article-meta>
+            <pub-date publication-format="electronic" date-type="publication">
+                <day>22</day>
+                <month>10</month>
+                <year>2023</year>
+            </pub-date>
+        </article-meta>
+    </article>
+</root>
\ No newline at end of file
diff --git a/test/tests/gen/pub-date-tests/pub-date-test-7/pub-date-test-7.sch b/test/tests/gen/pub-date-tests/pub-date-test-7/pub-date-test-7.sch
new file mode 100644
index 0000000000..e4c1cffeb9
--- /dev/null
+++ b/test/tests/gen/pub-date-tests/pub-date-test-7/pub-date-test-7.sch
@@ -0,0 +1,1303 @@
+<schema xmlns="http://purl.oclc.org/dsdl/schematron" xmlns:xlink="http://www.w3.org/1999/xlink" xmlns:xsl="http://www.w3.org/1999/XSL/Transform" xmlns:java="http://www.java.com/" xmlns:file="java.io.File" xmlns:ali="http://www.niso.org/schemas/ali/1.0/" xmlns:mml="http://www.w3.org/1998/Math/MathML" queryBinding="xslt2">
+  <title>eLife Schematron</title>
+  <ns uri="http://www.niso.org/schemas/ali/1.0/" prefix="ali"/>
+  <ns uri="http://www.w3.org/XML/1998/namespace" prefix="xml"/>
+  <ns uri="http://www.w3.org/1999/xlink" prefix="xlink"/>
+  <ns uri="http://www.w3.org/2001/XInclude" prefix="xi"/>
+  <ns uri="http://www.w3.org/1998/Math/MathML" prefix="mml"/>
+  <ns uri="http://saxon.sf.net/" prefix="saxon"/>
+  <ns uri="http://purl.org/dc/terms/" prefix="dc"/>
+  <ns uri="http://www.w3.org/2001/XMLSchema" prefix="xs"/>
+  <ns uri="https://elifesciences.org/namespace" prefix="e"/>
+  <ns uri="java.io.File" prefix="file"/>
+  <ns uri="http://www.java.com/" prefix="java"/>
+  <let name="features-subj" value="('Feature Article', 'Insight', 'Editorial')"/>
+  <let name="features-article-types" value="('article-commentary','editorial','discussion')"/>
+  <let name="research-subj" value="('Research Article', 'Short Report', 'Tools and Resources', 'Research Advance', 'Registered Report', 'Replication Study', 'Research Communication', 'Correction', 'Retraction', 'Scientific Correspondence', 'Review Article')"/>
+  <let name="notice-article-types" value="('correction','retraction','expression-of-concern')"/>
+  <let name="notice-display-types" value="('Correction','Retraction','Expression of Concern')"/>
+  <let name="allowed-article-types" value="('research-article','review-article',$features-article-types, $notice-article-types)"/>
+  <let name="allowed-disp-subj" value="($research-subj, $features-subj)"/>
+  <let name="MSAs" value="('Biochemistry and Chemical Biology', 'Cancer Biology', 'Cell Biology', 'Chromosomes and Gene Expression', 'Computational and Systems Biology', 'Developmental Biology', 'Ecology', 'Epidemiology and Global Health', 'Evolutionary Biology', 'Genetics and Genomics', 'Medicine', 'Immunology and Inflammation', 'Microbiology and Infectious Disease', 'Neuroscience', 'Physics of Living Systems', 'Plant Biology', 'Stem Cells and Regenerative Medicine', 'Structural Biology and Molecular Biophysics')"/>
+  <let name="funders" value="'../../../../../src/funders.xml'"/>
+  <let name="wellcome-fundref-ids" value="('http://dx.doi.org/10.13039/100010269','http://dx.doi.org/10.13039/100004440')"/>
+  <xsl:function name="e:is-prc" as="xs:boolean">
+    <xsl:param name="elem" as="node()"/>
+    <xsl:choose>
+      <xsl:when test="$elem/name()='article'">
+        <xsl:value-of select="e:is-prc-helper($elem)"/>
+      </xsl:when>
+      <xsl:otherwise>
+        <xsl:value-of select="e:is-prc-helper($elem/ancestor::article[1])"/>
+      </xsl:otherwise>
+    </xsl:choose>
+  </xsl:function>
+  <xsl:function name="e:is-prc-helper" as="xs:boolean">
+    <xsl:param name="article" as="node()"/>
+    <xsl:choose>
+      <xsl:when test="$article//article-meta/custom-meta-group/custom-meta[meta-name='publishing-route']/meta-value='prc'">
+        <xsl:value-of select="true()"/>
+      </xsl:when>
+      <xsl:otherwise>
+        <xsl:value-of select="false()"/>
+      </xsl:otherwise>
+    </xsl:choose>
+  </xsl:function>
+  <xsl:function name="e:get-version" as="xs:string">
+    <xsl:param name="elem" as="node()"/>
+    <xsl:choose>
+      <xsl:when test="$elem/name()='article'">
+        <xsl:value-of select="e:get-version-helper($elem)"/>
+      </xsl:when>
+      <xsl:otherwise>
+        <xsl:value-of select="e:get-version-helper($elem/ancestor::article[1])"/>
+      </xsl:otherwise>
+    </xsl:choose>
+  </xsl:function>
+  <xsl:function name="e:get-version-helper" as="xs:string">
+    <xsl:param name="article" as="node()"/>
+    <xsl:choose>
+      <xsl:when test="$article//article-meta/custom-meta-group/custom-meta[meta-name='schema-version']/meta-value">
+        <xsl:value-of select="$article//article-meta/custom-meta-group/custom-meta[meta-name='schema-version']/meta-value"/>
+      </xsl:when>
+      <xsl:otherwise>
+        <xsl:value-of select="'1'"/>
+      </xsl:otherwise>
+    </xsl:choose>
+  </xsl:function>
+  <xsl:function name="e:titleCaseToken" as="xs:string">
+    <xsl:param name="s" as="xs:string"/>
+    <xsl:choose>
+      <xsl:when test="contains($s,'-')">
+        <xsl:value-of select="concat(           upper-case(substring(substring-before($s,'-'), 1, 1)),           lower-case(substring(substring-before($s,'-'),2)),           '-',           upper-case(substring(substring-after($s,'-'), 1, 1)),           lower-case(substring(substring-after($s,'-'),2)))"/>
+      </xsl:when>
+      <xsl:when test="lower-case($s)='elife'">
+        <xsl:value-of select="'eLife'"/>
+      </xsl:when>
+      <xsl:when test="lower-case($s)=('and','or','the','an','of','in','as','at','by','for','a','to','up','but','yet')">
+        <xsl:value-of select="lower-case($s)"/>
+      </xsl:when>
+      <xsl:when test="matches(lower-case($s),'^rna$|^dna$|^mri$|^hiv$|^tor$|^aids$|^covid-19$|^covid$')">
+        <xsl:value-of select="upper-case($s)"/>
+      </xsl:when>
+      <xsl:when test="matches(lower-case($s),'[1-4]d')">
+        <xsl:value-of select="upper-case($s)"/>
+      </xsl:when>
+      <xsl:otherwise>
+        <xsl:value-of select="concat(upper-case(substring($s, 1, 1)), lower-case(substring($s, 2)))"/>
+      </xsl:otherwise>
+    </xsl:choose>
+  </xsl:function>
+  <xsl:function name="e:titleCase" as="xs:string">
+    <xsl:param name="s" as="xs:string"/>
+    <xsl:choose>
+      
+      <xsl:when test="lower-case($s)='protein kinase a'">
+        <xsl:value-of select="'Protein Kinase A'"/>
+      </xsl:when>
+      <xsl:when test="contains($s,' ')">
+        <xsl:variable name="token1" select="substring-before($s,' ')"/>
+        <xsl:variable name="token2" select="substring-after($s,$token1)"/>
+        <xsl:choose>
+          <xsl:when test="lower-case($token1)='elife'">
+            <xsl:value-of select="concat('eLife',               ' ',               string-join(for $x in tokenize(substring-after($token2,' '),'\p{Zs}') return e:titleCaseToken($x),' ')               )"/>
+          </xsl:when>
+          <xsl:when test="matches(lower-case($token1),'^rna$|^dna$|^mri$|^hiv$|^tor$|^aids$|^covid-19$|^covid$')">
+            <xsl:value-of select="concat(upper-case($token1),               ' ',               string-join(for $x in tokenize(substring-after($token2,' '),'\p{Zs}') return e:titleCaseToken($x),' ')               )"/>
+          </xsl:when>
+          <xsl:when test="matches(lower-case($token1),'[1-4]d')">
+            <xsl:value-of select="concat(upper-case($token1),               ' ',               string-join(for $x in tokenize(substring-after($token2,' '),'\p{Zs}') return e:titleCaseToken($x),' ')               )"/>
+          </xsl:when>
+          <xsl:when test="contains($token1,'-')">
+            <xsl:value-of select="string-join(for $x in tokenize($s,'\p{Zs}') return e:titleCaseToken($x),' ')"/>
+          </xsl:when>
+          <xsl:otherwise>
+            <xsl:value-of select="concat(               concat(upper-case(substring($token1, 1, 1)), lower-case(substring($token1, 2))),               ' ',               string-join(for $x in tokenize(substring-after($token2,' '),'\p{Zs}') return e:titleCaseToken($x),' ')               )"/>
+          </xsl:otherwise>
+        </xsl:choose>
+      </xsl:when>
+      <xsl:when test="lower-case($s)='elife'">
+        <xsl:value-of select="'eLife'"/>
+      </xsl:when>
+      <xsl:when test="lower-case($s)=('and','or','the','an','of')">
+        <xsl:value-of select="lower-case($s)"/>
+      </xsl:when>
+      <xsl:when test="matches(lower-case($s),'^rna$|^dna$|^mri$|^hiv$|^tor$|^aids$|^covid-19$|^covid$')">
+        <xsl:value-of select="upper-case($s)"/>
+      </xsl:when>
+      <xsl:when test="matches(lower-case($s),'[1-4]d')">
+        <xsl:value-of select="upper-case($s)"/>
+      </xsl:when>
+      <xsl:otherwise>
+        <xsl:value-of select="e:titleCaseToken($s)"/>
+      </xsl:otherwise>
+    </xsl:choose>
+  </xsl:function>
+  <xsl:function name="e:article-type2title" as="xs:string">
+    <xsl:param name="s" as="xs:string"/>
+    <xsl:choose>
+      <xsl:when test="$s = 'Replication Study'">
+        <xsl:value-of select="'Replication Study:'"/>
+      </xsl:when>
+      <xsl:when test="$s = 'Registered Report'">
+        <xsl:value-of select="'Registered report:'"/>
+      </xsl:when>
+      <xsl:when test="$s = 'Correction'">
+        <xsl:value-of select="'Correction:'"/>
+      </xsl:when>
+      <xsl:when test="$s = 'Retraction'">
+        <xsl:value-of select="'Retraction:'"/>
+      </xsl:when>
+      <xsl:when test="$s = 'Expression of Concern'">
+        <xsl:value-of select="'Expression of Concern:'"/>
+      </xsl:when>
+      <xsl:otherwise>
+        <xsl:value-of select="'undefined'"/>
+      </xsl:otherwise>
+    </xsl:choose>
+  </xsl:function>
+  <xsl:function name="e:sec-type2title" as="xs:string">
+    <xsl:param name="s" as="xs:string"/>
+    <xsl:choose>
+      <xsl:when test="$s = 'intro'">
+        <xsl:value-of select="'Introduction'"/>
+      </xsl:when>
+      <xsl:when test="$s = 'results'">
+        <xsl:value-of select="'Results'"/>
+      </xsl:when>
+      <xsl:when test="$s = 'discussion'">
+        <xsl:value-of select="'Discussion'"/>
+      </xsl:when>
+      <xsl:when test="$s = 'materials|methods'">
+        <xsl:value-of select="'Materials and methods'"/>
+      </xsl:when>
+      <xsl:when test="$s = 'results|discussion'">
+        <xsl:value-of select="'Results and discussion'"/>
+      </xsl:when>
+      <xsl:when test="$s = 'methods'">
+        <xsl:value-of select="'Methods'"/>
+      </xsl:when>
+      <xsl:when test="$s = 'model'">
+        <xsl:value-of select="'Model'"/>
+      </xsl:when>
+      <xsl:when test="$s = 'additional-information'">
+        <xsl:value-of select="'Additional information'"/>
+      </xsl:when>
+      <xsl:when test="$s = 'supplementary-material'">
+        <xsl:value-of select="'Additional files'"/>
+      </xsl:when>
+      <xsl:when test="$s = 'data-availability'">
+        <xsl:value-of select="'Data availability'"/>
+      </xsl:when>
+      <xsl:otherwise>
+        <xsl:value-of select="'undefined'"/>
+      </xsl:otherwise>
+    </xsl:choose>
+  </xsl:function>
+  <xsl:function name="e:fig-id-type" as="xs:string">
+    <xsl:param name="s" as="xs:string"/>
+    <xsl:choose>
+      <xsl:when test="matches($s,'^fig[0-9]{1,3}$')">
+        <xsl:value-of select="'Figure'"/>
+      </xsl:when>
+      <xsl:when test="matches($s,'^fig[0-9]{1,3}s[0-9]{1,3}$')">
+        <xsl:value-of select="'Figure supplement'"/>
+      </xsl:when>
+      <xsl:when test="matches($s,'^box[0-9]{1,3}fig[0-9]{1,3}$')">
+        <xsl:value-of select="'Box figure'"/>
+      </xsl:when>
+      <xsl:when test="matches($s,'^app[0-9]{1,3}fig[0-9]{1,3}$')">
+        <xsl:value-of select="'Appendix figure'"/>
+      </xsl:when>
+      <xsl:when test="matches($s,'^app[0-9]{1,3}fig[0-9]{1,3}s[0-9]{1,3}$')">
+        <xsl:value-of select="'Appendix figure supplement'"/>
+      </xsl:when>
+      <xsl:when test="matches($s,'^respfig[0-9]{1,3}$|^sa[0-9]fig[0-9]{1,3}$')">
+        <xsl:value-of select="'Author response figure'"/>
+      </xsl:when>
+      <xsl:when test="matches($s,'^C[0-9]{1,3}$|^chem[0-9]{1,3}$')">
+        <xsl:value-of select="'Chemical structure'"/>
+      </xsl:when>
+      <xsl:when test="matches($s,'^app[0-9]{1,3}C[0-9]{1,3}$|^app[0-9]{1,3}chem[0-9]{1,3}$')">
+        <xsl:value-of select="'Appendix chemical structure'"/>
+      </xsl:when>
+      <xsl:when test="matches($s,'^S[0-9]{1,3}$|^scheme[0-9]{1,3}$')">
+        <xsl:value-of select="'Scheme'"/>
+      </xsl:when>
+      <xsl:when test="matches($s,'^app[0-9]{1,3}S[0-9]{1,3}$|^app[0-9]{1,3}scheme[0-9]{1,3}$')">
+        <xsl:value-of select="'Appendix scheme'"/>
+      </xsl:when>
+      <xsl:otherwise>
+        <xsl:value-of select="'undefined'"/>
+      </xsl:otherwise>
+    </xsl:choose>
+  </xsl:function>
+  <xsl:function name="e:stripDiacritics" as="xs:string">
+    <xsl:param name="string" as="xs:string"/>
+    <xsl:value-of select="replace(replace(replace(translate(normalize-unicode($string,'NFD'),'ƀȼđɇǥħɨıɉꝁłøɍŧɏƶ','bcdeghiijklortyz'),'[\p{M}’]',''),'æ','ae'),'ß','ss')"/>
+  </xsl:function>
+  <xsl:function name="e:ref-list-string" as="xs:string">
+    <xsl:param name="ref"/>
+    <xsl:choose>
+      <xsl:when test="$ref/element-citation[1]/person-group[1]/* and $ref/element-citation[1]/year">
+        <xsl:value-of select="concat(           replace(e:get-collab-or-surname($ref/element-citation[1]/person-group[1]/*[1]),'\p{Zs}',''),           ' ',           $ref/element-citation[1]/year[1],           ' ',           string-join(for $x in $ref/element-citation[1]/person-group[1]/*[position()=(2,3)]           return replace(e:get-collab-or-surname($x),'\p{Zs}',''),' ')           )"/>
+      </xsl:when>
+      <xsl:when test="$ref/element-citation/person-group[1]/*">
+        <xsl:value-of select="concat(           replace(e:get-collab-or-surname($ref/element-citation[1]/person-group[1]/*[1]),'\p{Zs}',''),           ' 9999 ',           string-join(for $x in $ref/element-citation[1]/person-group[1]/*[position()=(2,3)]           return replace(e:get-collab-or-surname($x),'\p{Zs}',''),' ')           )"/>
+      </xsl:when>
+      <xsl:when test="$ref/element-citation/year">
+        <xsl:value-of select="concat(' ',$ref/element-citation[1]/year[1])"/>
+      </xsl:when>
+      <xsl:otherwise>
+        <xsl:value-of select="'zzzzz 9999'"/>
+      </xsl:otherwise>
+    </xsl:choose>
+  </xsl:function>
+  <xsl:function name="e:ref-list-string2" as="xs:string">
+    <xsl:param name="ref"/>
+    <xsl:choose>
+      <xsl:when test="$ref/element-citation[1]/year and count($ref/element-citation[1]/person-group[1]/*) = 2">
+        <xsl:value-of select="concat(           e:get-collab-or-surname($ref/element-citation[1]/person-group[1]/*[1]),           ' ',           e:get-collab-or-surname($ref/element-citation[1]/person-group[1]/*[2]),           ' ',           $ref/element-citation[1]/year[1])"/>
+      </xsl:when>
+      <xsl:when test="$ref/element-citation/person-group[1]/* and $ref/element-citation[1]/year">
+        <xsl:value-of select="concat(           e:get-collab-or-surname($ref/element-citation[1]/person-group[1]/*[1]),           ' ',           $ref/element-citation[1]/year[1])"/>
+      </xsl:when>
+      <xsl:when test="$ref/element-citation/person-group[1]/*">
+        <xsl:value-of select="concat(           e:get-collab-or-surname($ref/element-citation[1]/person-group[1]/*[1]),           ' 9999 ')"/>
+      </xsl:when>
+      <xsl:when test="$ref/element-citation/year">
+        <xsl:value-of select="concat(' ',$ref/element-citation[1]/year[1])"/>
+      </xsl:when>
+      <xsl:otherwise>
+        <xsl:value-of select="'zzzzz 9999'"/>
+      </xsl:otherwise>
+    </xsl:choose>
+  </xsl:function>
+  <xsl:function name="e:get-collab-or-surname" as="xs:string?">
+    <xsl:param name="collab-or-name"/>
+    <xsl:choose>
+      <xsl:when test="$collab-or-name/name()='collab'">
+        <xsl:value-of select="e:stripDiacritics(replace(lower-case($collab-or-name),'\.',''))"/>
+      </xsl:when>
+      <xsl:when test="$collab-or-name/surname">
+        <xsl:value-of select="e:stripDiacritics(lower-case($collab-or-name/surname[1]))"/>
+      </xsl:when>
+      <xsl:otherwise/>
+    </xsl:choose>
+  </xsl:function>
+  <xsl:function name="e:cite-name-text" as="xs:string">
+    <xsl:param name="person-group"/>
+    <xsl:choose>
+      <xsl:when test="(count($person-group/*) = 1) and $person-group/name">
+        <xsl:value-of select="$person-group/name/surname[1]"/>
+      </xsl:when>
+      <xsl:when test="(count($person-group/*) = 1) and $person-group/collab">
+        <xsl:value-of select="$person-group/collab"/>
+      </xsl:when>
+      <xsl:when test="(count($person-group/*) = 2) and (count($person-group/name) = 1) and $person-group/*[1]/local-name() = 'collab'">
+        <xsl:value-of select="concat($person-group/collab,' and ',$person-group/name/surname[1])"/>
+      </xsl:when>
+      <xsl:when test="(count($person-group/*) = 2) and (count($person-group/name) = 1) and $person-group/*[1]/local-name() = 'name'">
+        <xsl:value-of select="concat($person-group/name/surname[1],' and ',$person-group/collab)"/>
+      </xsl:when>
+      <xsl:when test="(count($person-group/*) = 2) and (count($person-group/name) = 2)">
+        <xsl:value-of select="concat($person-group/name[1]/surname[1],' and ',$person-group/name[2]/surname[1])"/>
+      </xsl:when>
+      <xsl:when test="(count($person-group/*) = 2) and (count($person-group/collab) = 2)">
+        <xsl:value-of select="concat($person-group/collab[1],' and ',$person-group/collab[2])"/>
+      </xsl:when>
+      <xsl:when test="(count($person-group/*) ge 2) and $person-group/*[1]/local-name() = 'collab'">
+        <xsl:value-of select="concat($person-group/collab[1], ' et al.')"/>
+      </xsl:when>
+      <xsl:when test="(count($person-group/*) ge 2) and $person-group/*[1]/local-name() = 'name'">
+        <xsl:value-of select="concat($person-group/name[1]/surname[1], ' et al.')"/>
+      </xsl:when>
+      <xsl:otherwise>
+        <xsl:value-of select="'undetermined'"/>
+      </xsl:otherwise>
+    </xsl:choose>
+  </xsl:function>
+  <xsl:function name="e:citation-format1" as="xs:string">
+    <xsl:param name="element-citation"/>
+    <xsl:choose>
+      <xsl:when test="$element-citation/person-group and $element-citation//year">
+        <xsl:value-of select="concat(e:cite-name-text($element-citation/person-group[1]),', ',$element-citation/descendant::year[1])"/>
+      </xsl:when>
+      <xsl:when test="$element-citation/person-group and not($element-citation//year)">
+        <xsl:value-of select="concat(e:cite-name-text($element-citation/person-group[1]),', ')"/>
+      </xsl:when>
+      <xsl:when test="not($element-citation/person-group) and $element-citation//year">
+        <xsl:value-of select="concat('et al., ',$element-citation/descendant::year[1])"/>
+      </xsl:when>
+      <xsl:otherwise>
+        <xsl:value-of select="', '"/>
+      </xsl:otherwise>
+    </xsl:choose>
+  </xsl:function>
+  <xsl:function name="e:citation-format2" as="xs:string">
+    <xsl:param name="element-citation"/>
+    <xsl:choose>
+      <xsl:when test="$element-citation/person-group and $element-citation//year">
+        <xsl:value-of select="concat(e:cite-name-text($element-citation/person-group[1]),' (',$element-citation/descendant::year[1],')')"/>
+      </xsl:when>
+      <xsl:when test="$element-citation/person-group and not($element-citation//year)">
+        <xsl:value-of select="concat(e:cite-name-text($element-citation/person-group[1]),' ()')"/>
+      </xsl:when>
+      <xsl:when test="not($element-citation/person-group) and $element-citation//year">
+        <xsl:value-of select="concat('et al. (',$element-citation/descendant::year[1],')')"/>
+      </xsl:when>
+      <xsl:otherwise>
+        <xsl:value-of select="', '"/>
+      </xsl:otherwise>
+    </xsl:choose>
+  </xsl:function>
+  <xsl:function name="e:ref-cite-list">
+    <xsl:param name="ref-list" as="node()"/>
+    <xsl:element name="list">
+      <xsl:for-each select="$ref-list/ref[element-citation[year]]">
+        <xsl:variable name="cite" select="e:citation-format1(./element-citation[1])"/>
+        <xsl:element name="item">
+          <xsl:attribute name="id">
+            <xsl:value-of select="./@id"/>
+          </xsl:attribute>
+          <xsl:attribute name="no-suffix">
+            <xsl:value-of select="replace($cite,'[A-Za-z]$','')"/>
+          </xsl:attribute>
+          <xsl:value-of select="$cite"/>
+        </xsl:element>
+      </xsl:for-each>
+    </xsl:element>
+  </xsl:function>
+  <xsl:function name="e:non-distinct-citations">
+    <xsl:param name="cite-list" as="node()"/>
+    <xsl:element name="list">
+    <xsl:for-each select="$cite-list//*:item">
+      <xsl:variable name="cite" select="./string()"/>
+      <xsl:choose>
+        <xsl:when test="./preceding::*:item/string() = $cite">
+          <xsl:element name="item">
+            <xsl:attribute name="id">
+              <xsl:value-of select="./@id"/>
+            </xsl:attribute>
+            <xsl:value-of select="$cite"/>
+          </xsl:element>
+        </xsl:when>
+        <xsl:when test="not(matches($cite,'[A-Za-z]$')) and (./preceding::*:item/@no-suffix/string() = $cite)">
+          <xsl:element name="item">
+            <xsl:attribute name="id">
+              <xsl:value-of select="./@id"/>
+            </xsl:attribute>
+          <xsl:value-of select="$cite"/>
+          </xsl:element>
+        </xsl:when>
+        <xsl:when test="not(matches($cite,'[A-Za-z]$')) and ./following::*:item/@no-suffix/string() = $cite">
+          <xsl:element name="item">
+            <xsl:attribute name="id">
+              <xsl:value-of select="./@id"/>
+            </xsl:attribute>
+          <xsl:value-of select="$cite"/>
+          </xsl:element>
+        </xsl:when>
+        <xsl:otherwise/>
+      </xsl:choose>
+    </xsl:for-each>
+    </xsl:element>
+  </xsl:function>
+  <xsl:function name="e:get-name" as="xs:string">
+    <xsl:param name="name"/>
+    <xsl:choose>
+      <xsl:when test="$name/given-names[1] and $name/surname[1] and $name/suffix[1]">
+        <xsl:value-of select="concat($name/given-names[1],' ',$name/surname[1],' ',$name/suffix[1])"/>
+      </xsl:when>
+      <xsl:when test="not($name/given-names[1]) and $name/surname[1] and $name/suffix[1]">
+        <xsl:value-of select="concat($name/surname[1],' ',$name/suffix[1])"/>
+      </xsl:when>
+      <xsl:when test="$name/given-names[1] and $name/surname[1] and not($name/suffix[1])">
+        <xsl:value-of select="concat($name/given-names[1],' ',$name/surname[1])"/>
+      </xsl:when>
+      <xsl:when test="not($name/given-names[1]) and $name/surname[1] and not($name/suffix[1])">
+        <xsl:value-of select="$name/surname[1]"/>
+      </xsl:when>
+      <xsl:otherwise>
+        
+        <xsl:value-of select="'No elements present'"/>
+      </xsl:otherwise>
+    </xsl:choose>
+  </xsl:function>
+  <xsl:function name="e:get-collab">
+    <xsl:param name="collab"/>
+    <xsl:for-each select="$collab/(*|text())">
+      <xsl:choose>
+        <xsl:when test="./name()='contrib-group'"/>
+        <xsl:otherwise>
+          <xsl:value-of select="."/>
+        </xsl:otherwise>
+      </xsl:choose>
+    </xsl:for-each>
+  </xsl:function>
+  <xsl:function name="e:isbn-sum" as="xs:integer">
+    <xsl:param name="s" as="xs:string"/>
+    <xsl:choose>
+      <xsl:when test="string-length($s) = 10">
+        <xsl:variable name="d1" select="number(substring($s,1,1)) * 10"/>
+        <xsl:variable name="d2" select="number(substring($s,2,1)) * 9"/>
+        <xsl:variable name="d3" select="number(substring($s,3,1)) * 8"/>
+        <xsl:variable name="d4" select="number(substring($s,4,1)) * 7"/>
+        <xsl:variable name="d5" select="number(substring($s,5,1)) * 6"/>
+        <xsl:variable name="d6" select="number(substring($s,6,1)) * 5"/>
+        <xsl:variable name="d7" select="number(substring($s,7,1)) * 4"/>
+        <xsl:variable name="d8" select="number(substring($s,8,1)) * 3"/>
+        <xsl:variable name="d9" select="number(substring($s,9,1)) * 2"/>
+        <xsl:variable name="d10" select="number(substring($s,10,1)) * 1"/>
+        <xsl:value-of select="number($d1 + $d2 + $d3 + $d4 + $d5 + $d6 + $d7 + $d8 + $d9 + $d10) mod 11"/>
+      </xsl:when>
+      <xsl:when test="string-length($s) = 13">
+        <xsl:variable name="d1" select="number(substring($s,1,1))"/>
+        <xsl:variable name="d2" select="number(substring($s,2,1)) * 3"/>
+        <xsl:variable name="d3" select="number(substring($s,3,1))"/>
+        <xsl:variable name="d4" select="number(substring($s,4,1)) * 3"/>
+        <xsl:variable name="d5" select="number(substring($s,5,1))"/>
+        <xsl:variable name="d6" select="number(substring($s,6,1)) * 3"/>
+        <xsl:variable name="d7" select="number(substring($s,7,1))"/>
+        <xsl:variable name="d8" select="number(substring($s,8,1)) * 3"/>
+        <xsl:variable name="d9" select="number(substring($s,9,1))"/>
+        <xsl:variable name="d10" select="number(substring($s,10,1)) * 3"/>
+        <xsl:variable name="d11" select="number(substring($s,11,1))"/>
+        <xsl:variable name="d12" select="number(substring($s,12,1)) * 3"/>
+        <xsl:variable name="d13" select="number(substring($s,13,1))"/>
+        <xsl:value-of select="number($d1 + $d2 + $d3 + $d4 + $d5 + $d6 + $d7 + $d8 + $d9 + $d10 + $d11 + $d12 + $d13) mod 10"/>
+      </xsl:when>
+      <xsl:otherwise>
+        <xsl:value-of select="number('1')"/>
+      </xsl:otherwise>
+    </xsl:choose>
+  </xsl:function>
+  <xsl:function name="e:escape-for-regex" as="xs:string">
+    <xsl:param name="arg" as="xs:string?"/>
+    <xsl:sequence select="replace($arg,'(\.|\[|\]|\\|\||\-|\^|\$|\?|\*|\+|\{|\}|\(|\))','\\$1')"/>
+  </xsl:function>
+  <xsl:function name="e:get-ordinal" as="xs:string">
+    <xsl:param name="value" as="xs:integer?"/>
+    <xsl:if test="translate(string($value), '0123456789', '') = '' and number($value) &gt; 0">
+      <xsl:variable name="mod100" select="$value mod 100"/>
+      <xsl:variable name="mod10" select="$value mod 10"/>
+      <xsl:choose>
+        <xsl:when test="$mod100 = 11 or $mod100 = 12 or $mod100 = 13">
+          <xsl:value-of select="concat($value,'th')"/>
+        </xsl:when>
+        <xsl:when test="$mod10 = 1">
+          <xsl:value-of select="concat($value,'st')"/>
+        </xsl:when>
+        <xsl:when test="$mod10 = 2">
+          <xsl:value-of select="concat($value,'nd')"/>
+        </xsl:when>
+        <xsl:when test="$mod10 = 3">
+          <xsl:value-of select="concat($value,'rd')"/>
+        </xsl:when>
+        <xsl:otherwise>
+          <xsl:value-of select="concat($value,'th')"/>
+        </xsl:otherwise>
+      </xsl:choose>
+    </xsl:if>
+  </xsl:function>
+  <let name="org-regex" value="'b\.\p{Zs}?subtilis|bacillus\p{Zs}?subtilis|d\.\p{Zs}?melanogaster|drosophila\p{Zs}?melanogaster|e\.\p{Zs}?coli|escherichia\p{Zs}?coli|s\.\p{Zs}?pombe|schizosaccharomyces\p{Zs}?pombe|s\.\p{Zs}?cerevisiae|saccharomyces\p{Zs}?cerevisiae|c\.\p{Zs}?elegans|caenorhabditis\p{Zs}?elegans|a\.\p{Zs}?thaliana|arabidopsis\p{Zs}?thaliana|m\.\p{Zs}?thermophila|myceliophthora\p{Zs}?thermophila|dictyostelium|p\.\p{Zs}?falciparum|plasmodium\p{Zs}?falciparum|s\.\p{Zs}?enterica|salmonella\p{Zs}?enterica|s\.\p{Zs}?pyogenes|streptococcus\p{Zs}?pyogenes|p\.\p{Zs}?dumerilii|platynereis\p{Zs}?dumerilii|p\.\p{Zs}?cynocephalus|papio\p{Zs}?cynocephalus|o\.\p{Zs}?fasciatus|oncopeltus\p{Zs}?fasciatus|n\.\p{Zs}?crassa|neurospora\p{Zs}?crassa|c\.\p{Zs}?intestinalis|ciona\p{Zs}?intestinalis|e\.\p{Zs}?cuniculi|encephalitozoon\p{Zs}?cuniculi|h\.\p{Zs}?salinarum|halobacterium\p{Zs}?salinarum|s\.\p{Zs}?solfataricus|sulfolobus\p{Zs}?solfataricus|s\.\p{Zs}?mediterranea|schmidtea\p{Zs}?mediterranea|s\.\p{Zs}?rosetta|salpingoeca\p{Zs}?rosetta|n\.\p{Zs}?vectensis|nematostella\p{Zs}?vectensis|s\.\p{Zs}?aureus|staphylococcus\p{Zs}?aureus|v\.\p{Zs}?cholerae|vibrio\p{Zs}?cholerae|t\.\p{Zs}?thermophila|tetrahymena\p{Zs}?thermophila|c\.\p{Zs}?reinhardtii|chlamydomonas\p{Zs}?reinhardtii|n\.\p{Zs}?attenuata|nicotiana\p{Zs}?attenuata|e\.\p{Zs}?carotovora|erwinia\p{Zs}?carotovora|e\.\p{Zs}?faecalis|h\.\p{Zs}?sapiens|homo\p{Zs}?sapiens|c\.\p{Zs}?trachomatis|chlamydia\p{Zs}?trachomatis|enterococcus\p{Zs}?faecalis|x\.\p{Zs}?laevis|xenopus\p{Zs}?laevis|x\.\p{Zs}?tropicalis|xenopus\p{Zs}?tropicalis|m\.\p{Zs}?musculus|mus\p{Zs}?musculus|d\.\p{Zs}?immigrans|drosophila\p{Zs}?immigrans|d\.\p{Zs}?subobscura|drosophila\p{Zs}?subobscura|d\.\p{Zs}?affinis|drosophila\p{Zs}?affinis|d\.\p{Zs}?obscura|drosophila\p{Zs}?obscura|f\.\p{Zs}?tularensis|francisella\p{Zs}?tularensis|p\.\p{Zs}?plantaginis|podosphaera\p{Zs}?plantaginis|p\.\p{Zs}?lanceolata|plantago\p{Zs}?lanceolata|m\.\p{Zs}?trossulus|mytilus\p{Zs}?trossulus|m\.\p{Zs}?edulis|mytilus\p{Zs}?edulis|m\.\p{Zs}?chilensis|mytilus\p{Zs}?chilensis|u\.\p{Zs}?maydis|ustilago\p{Zs}?maydis|p\.\p{Zs}?knowlesi|plasmodium\p{Zs}?knowlesi|p\.\p{Zs}?aeruginosa|pseudomonas\p{Zs}?aeruginosa|t\.\p{Zs}?brucei|trypanosoma\p{Zs}?brucei|t\.\p{Zs}?gondii|toxoplasma\p{Zs}?gondii|d\.\p{Zs}?rerio|danio\p{Zs}?rerio|yimenosaurus|lesothosaurus\p{Zs}?diagnosticus|l\.\p{Zs}?diagnosticus|scelidosaurus\p{Zs}?harrisonii|s\.\p{Zs}?harrisonii|haya\p{Zs}?griva|h\.\p{Zs}?griva|polacanthus\p{Zs}?foxii|p\.\p{Zs}?foxii|scutellosaurus\p{Zs}?lawleri|s\.\p{Zs}?lawleri|saichania\p{Zs}?chulsanensis|s\.\p{Zs}?chulsanensis|gargoyleosaurus\p{Zs}?parkpinorum|g\.\p{Zs}?parkpinorum|europelta\p{Zs}?carbonensis|e\.\p{Zs}?carbonensis|stegosaurus\p{Zs}?stenops|s\.\p{Zs}?stenops|pinacosaurus\p{Zs}?grangeri|p\.\p{Zs}?grangeri|tatisaurus\p{Zs}?oehleri|t\.\p{Zs}?oehleri|hungarosaurus\p{Zs}?tormai|h\.\p{Zs}?tormai|bienosaurus\p{Zs}?lufengensis|b\.\p{Zs}?lufengensis|fabrosaurus\p{Zs}?australis|f\.\p{Zs}?australis|chinshakiangosaurus\p{Zs}?chunghoensis|c\.\p{Zs}?chunghoensis|euoplocephalus\p{Zs}?tutus|e\.\p{Zs}?tutus|drosophila|xenopus|salmonella|g\.\p{Zs}?beringei|gorilla\p{Zs}?beringei|m\.\p{Zs}?assamensis|macaca\p{Zs}?assamensis|m\.\p{Zs}?fuscata|macaca\p{Zs}?fuscata|m\.\p{Zs}?mulatta|macaca\p{Zs}?mulatta|m\.\p{Zs}?nemestrina|macaca\p{Zs}?nemestrina|m\.\p{Zs}?sphinx|mandrillus\p{Zs}?sphinx|p\.\p{Zs}?anubis|papio\p{Zs}?anubis|p\.\p{Zs}?hamadryas|papio\p{Zs}?hamadryas|p\.\p{Zs}?paniscus|pan\p{Zs}?paniscus|p\.\p{Zs}?troglodytes|pan\p{Zs}?troglodytes'"/>
+  <let name="sec-title-regex" value="string-join(     for $x in tokenize($org-regex,'\|')     return concat('^',$x,'$')     ,'|')"/>
+  <xsl:function name="e:org-conform" as="xs:string">
+  <xsl:param name="s" as="xs:string"/>
+  <xsl:choose>
+    <xsl:when test="matches($s,'b\.\p{Zs}?subtilis')">
+      <xsl:value-of select="'B. subtilis'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'bacillus\p{Zs}?subtilis')">
+      <xsl:value-of select="'Bacillus subtilis'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'d\.\p{Zs}?melanogaster')">
+      <xsl:value-of select="'D. melanogaster'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'drosophila\p{Zs}?melanogaster')">
+      <xsl:value-of select="'Drosophila melanogaster'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'e\.\p{Zs}?coli')">
+      <xsl:value-of select="'E. coli'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'escherichia\p{Zs}?coli')">
+      <xsl:value-of select="'Escherichia coli'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'s\.\p{Zs}?pombe')">
+      <xsl:value-of select="'S. pombe'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'schizosaccharomyces\p{Zs}?pombe')">
+      <xsl:value-of select="'Schizosaccharomyces pombe'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'s\.\p{Zs}?cerevisiae')">
+      <xsl:value-of select="'S. cerevisiae'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'saccharomyces\p{Zs}?cerevisiae')">
+      <xsl:value-of select="'Saccharomyces cerevisiae'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'c\.\p{Zs}?elegans')">
+      <xsl:value-of select="'C. elegans'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'caenorhabditis\p{Zs}?elegans')">
+      <xsl:value-of select="'Caenorhabditis elegans'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'a\.\p{Zs}?thaliana')">
+      <xsl:value-of select="'A. thaliana'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'arabidopsis\p{Zs}?thaliana')">
+      <xsl:value-of select="'Arabidopsis thaliana'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'m\.\p{Zs}?thermophila')">
+      <xsl:value-of select="'M. thermophila'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'myceliophthora\p{Zs}?thermophila')">
+      <xsl:value-of select="'Myceliophthora thermophila'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'dictyostelium')">
+      <xsl:value-of select="'Dictyostelium'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'p\.\p{Zs}?falciparum')">
+      <xsl:value-of select="'P. falciparum'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'plasmodium\p{Zs}?falciparum')">
+      <xsl:value-of select="'Plasmodium falciparum'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'s\.\p{Zs}?enterica')">
+      <xsl:value-of select="'S. enterica'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'salmonella\p{Zs}?enterica')">
+      <xsl:value-of select="'Salmonella enterica'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'s\.\p{Zs}?pyogenes')">
+      <xsl:value-of select="'S. pyogenes'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'streptococcus\p{Zs}?pyogenes')">
+      <xsl:value-of select="'Streptococcus pyogenes'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'p\.\p{Zs}?dumerilii')">
+      <xsl:value-of select="'P. dumerilii'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'platynereis\p{Zs}?dumerilii')">
+      <xsl:value-of select="'Platynereis dumerilii'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'p\.\p{Zs}?cynocephalus')">
+      <xsl:value-of select="'P. cynocephalus'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'papio\p{Zs}?cynocephalus')">
+      <xsl:value-of select="'Papio cynocephalus'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'o\.\p{Zs}?fasciatus')">
+      <xsl:value-of select="'O. fasciatus'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'oncopeltus\p{Zs}?fasciatus')">
+      <xsl:value-of select="'Oncopeltus fasciatus'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'n\.\p{Zs}?crassa')">
+      <xsl:value-of select="'N. crassa'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'neurospora\p{Zs}?crassa')">
+      <xsl:value-of select="'Neurospora crassa'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'c\.\p{Zs}?intestinalis')">
+      <xsl:value-of select="'C. intestinalis'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'ciona\p{Zs}?intestinalis')">
+      <xsl:value-of select="'Ciona intestinalis'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'e\.\p{Zs}?cuniculi')">
+      <xsl:value-of select="'E. cuniculi'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'encephalitozoon\p{Zs}?cuniculi')">
+      <xsl:value-of select="'Encephalitozoon cuniculi'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'h\.\p{Zs}?salinarum')">
+      <xsl:value-of select="'H. salinarum'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'halobacterium\p{Zs}?salinarum')">
+      <xsl:value-of select="'Halobacterium salinarum'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'s\.\p{Zs}?solfataricus')">
+      <xsl:value-of select="'S. solfataricus'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'sulfolobus\p{Zs}?solfataricus')">
+      <xsl:value-of select="'Sulfolobus solfataricus'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'s\.\p{Zs}?mediterranea')">
+      <xsl:value-of select="'S. mediterranea'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'schmidtea\p{Zs}?mediterranea')">
+      <xsl:value-of select="'Schmidtea mediterranea'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'s\.\p{Zs}?rosetta')">
+      <xsl:value-of select="'S. rosetta'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'salpingoeca\p{Zs}?rosetta')">
+      <xsl:value-of select="'Salpingoeca rosetta'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'n\.\p{Zs}?vectensis')">
+      <xsl:value-of select="'N. vectensis'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'nematostella\p{Zs}?vectensis')">
+      <xsl:value-of select="'Nematostella vectensis'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'s\.\p{Zs}?aureus')">
+      <xsl:value-of select="'S. aureus'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'staphylococcus\p{Zs}?aureus')">
+      <xsl:value-of select="'Staphylococcus aureus'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'v\.\p{Zs}?cholerae')">
+      <xsl:value-of select="'V. cholerae'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'vibrio\p{Zs}?cholerae')">
+      <xsl:value-of select="'Vibrio cholerae'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'t\.\p{Zs}?thermophila')">
+      <xsl:value-of select="'T. thermophila'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'tetrahymena\p{Zs}?thermophila')">
+      <xsl:value-of select="'Tetrahymena thermophila'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'c\.\p{Zs}?reinhardtii')">
+      <xsl:value-of select="'C. reinhardtii'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'chlamydomonas\p{Zs}?reinhardtii')">
+      <xsl:value-of select="'Chlamydomonas reinhardtii'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'n\.\p{Zs}?attenuata')">
+      <xsl:value-of select="'N. attenuata'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'nicotiana\p{Zs}?attenuata')">
+      <xsl:value-of select="'Nicotiana attenuata'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'e\.\p{Zs}?carotovora')">
+      <xsl:value-of select="'E. carotovora'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'erwinia\p{Zs}?carotovora')">
+      <xsl:value-of select="'Erwinia carotovora'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'e\.\p{Zs}?faecalis')">
+      <xsl:value-of select="'E. faecalis'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'h\.\p{Zs}?sapiens')">
+      <xsl:value-of select="'H. sapiens'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'homo\p{Zs}?sapiens')">
+      <xsl:value-of select="'Homo sapiens'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'c\.\p{Zs}?trachomatis')">
+      <xsl:value-of select="'C. trachomatis'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'chlamydia\p{Zs}?trachomatis')">
+      <xsl:value-of select="'Chlamydia trachomatis'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'enterococcus\p{Zs}?faecalis')">
+      <xsl:value-of select="'Enterococcus faecalis'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'x\.\p{Zs}?laevis')">
+      <xsl:value-of select="'X. laevis'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'xenopus\p{Zs}?laevis')">
+      <xsl:value-of select="'Xenopus laevis'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'x\.\p{Zs}?tropicalis')">
+      <xsl:value-of select="'X. tropicalis'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'xenopus\p{Zs}?tropicalis')">
+      <xsl:value-of select="'Xenopus tropicalis'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'m\.\p{Zs}?musculus')">
+      <xsl:value-of select="'M. musculus'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'mus\p{Zs}?musculus')">
+      <xsl:value-of select="'Mus musculus'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'d\.\p{Zs}?immigrans')">
+      <xsl:value-of select="'D. immigrans'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'drosophila\p{Zs}?immigrans')">
+      <xsl:value-of select="'Drosophila immigrans'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'d\.\p{Zs}?subobscura')">
+      <xsl:value-of select="'D. subobscura'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'drosophila\p{Zs}?subobscura')">
+      <xsl:value-of select="'Drosophila subobscura'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'d\.\p{Zs}?affinis')">
+      <xsl:value-of select="'D. affinis'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'drosophila\p{Zs}?affinis')">
+      <xsl:value-of select="'Drosophila affinis'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'d\.\p{Zs}?obscura')">
+      <xsl:value-of select="'D. obscura'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'drosophila\p{Zs}?obscura')">
+      <xsl:value-of select="'Drosophila obscura'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'f\.\p{Zs}?tularensis')">
+      <xsl:value-of select="'F. tularensis'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'francisella\p{Zs}?tularensis')">
+      <xsl:value-of select="'Francisella tularensis'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'p\.\p{Zs}?plantaginis')">
+      <xsl:value-of select="'P. plantaginis'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'podosphaera\p{Zs}?plantaginis')">
+      <xsl:value-of select="'Podosphaera plantaginis'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'p\.\p{Zs}?lanceolata')">
+      <xsl:value-of select="'P. lanceolata'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'plantago\p{Zs}?lanceolata')">
+      <xsl:value-of select="'Plantago lanceolata'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'m\.\p{Zs}?trossulus')">
+      <xsl:value-of select="'M. trossulus'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'mytilus\p{Zs}?trossulus')">
+      <xsl:value-of select="'Mytilus trossulus'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'m\.\p{Zs}?edulis')">
+      <xsl:value-of select="'M. edulis'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'mytilus\p{Zs}?edulis')">
+      <xsl:value-of select="'Mytilus edulis'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'m\.\p{Zs}?chilensis')">
+      <xsl:value-of select="'M. chilensis'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'mytilus\p{Zs}?chilensis')">
+      <xsl:value-of select="'Mytilus chilensis'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'u\.\p{Zs}?maydis')">
+      <xsl:value-of select="'U. maydis'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'ustilago\p{Zs}?maydis')">
+      <xsl:value-of select="'Ustilago maydis'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'p\.\p{Zs}?knowlesi')">
+      <xsl:value-of select="'P. knowlesi'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'plasmodium\p{Zs}?knowlesi')">
+      <xsl:value-of select="'Plasmodium knowlesi'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'p\.\p{Zs}?aeruginosa')">
+      <xsl:value-of select="'P. aeruginosa'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'pseudomonas\p{Zs}?aeruginosa')">
+      <xsl:value-of select="'Pseudomonas aeruginosa'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'t\.\p{Zs}?brucei')">
+      <xsl:value-of select="'T. brucei'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'trypanosoma\p{Zs}?brucei')">
+      <xsl:value-of select="'Trypanosoma brucei'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'caulobacter\p{Zs}?crescentus')">
+      <xsl:value-of select="'Caulobacter crescentus'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'c\.\p{Zs}?crescentus')">
+      <xsl:value-of select="'C. crescentus'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'agrobacterium\p{Zs}?tumefaciens')">
+      <xsl:value-of select="'Agrobacterium tumefaciens'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'a\.\p{Zs}?tumefaciens')">
+      <xsl:value-of select="'A. tumefaciens'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'t\.\p{Zs}?gondii')">
+      <xsl:value-of select="'T. gondii'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'toxoplasma\p{Zs}?gondii')">
+      <xsl:value-of select="'Toxoplasma gondii'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'d\.\p{Zs}?rerio')">
+      <xsl:value-of select="'D. rerio'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'danio\p{Zs}?rerio')">
+      <xsl:value-of select="'Danio rerio'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'drosophila')">
+      <xsl:value-of select="'Drosophila'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'yimenosaurus')">
+      <xsl:value-of select="'Yimenosaurus'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'lesothosaurus\p{Zs}?diagnosticus')">
+      <xsl:value-of select="'Lesothosaurus diagnosticus'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'l.\p{Zs}?diagnosticus')">
+      <xsl:value-of select="'L. diagnosticus'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'scelidosaurus\p{Zs}?harrisonii')">
+      <xsl:value-of select="'Scelidosaurus harrisonii'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'s.\p{Zs}?harrisonii')">
+      <xsl:value-of select="'S. harrisonii'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'haya\p{Zs}?griva')">
+      <xsl:value-of select="'Haya griva'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'h.\p{Zs}?griva')">
+      <xsl:value-of select="'H. griva'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'polacanthus\p{Zs}?foxii')">
+      <xsl:value-of select="'Polacanthus foxii'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'p.\p{Zs}?foxii')">
+      <xsl:value-of select="'P. foxii'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'scutellosaurus\p{Zs}?lawleri')">
+      <xsl:value-of select="'Scutellosaurus lawleri'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'s.\p{Zs}?lawleri')">
+      <xsl:value-of select="'S. lawleri'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'saichania\p{Zs}?chulsanensis')">
+      <xsl:value-of select="'Saichania chulsanensis'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'s.\p{Zs}?chulsanensis')">
+      <xsl:value-of select="'S. chulsanensis'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'gargoyleosaurus\p{Zs}?parkpinorum')">
+      <xsl:value-of select="'Gargoyleosaurus parkpinorum'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'g.\p{Zs}?parkpinorum')">
+      <xsl:value-of select="'G. parkpinorum'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'europelta\p{Zs}?carbonensis')">
+      <xsl:value-of select="'Europelta carbonensis'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'e.\p{Zs}?carbonensis')">
+      <xsl:value-of select="'E. carbonensis'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'stegosaurus\p{Zs}?stenops')">
+      <xsl:value-of select="'Stegosaurus stenops'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'s.\p{Zs}?stenops')">
+      <xsl:value-of select="'S. stenops'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'pinacosaurus\p{Zs}?grangeri')">
+      <xsl:value-of select="'Pinacosaurus grangeri'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'p.\p{Zs}?grangeri')">
+      <xsl:value-of select="'P. grangeri'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'tatisaurus\p{Zs}?oehleri')">
+      <xsl:value-of select="'Tatisaurus oehleri'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'t.\p{Zs}?oehleri')">
+      <xsl:value-of select="'T. oehleri'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'hungarosaurus\p{Zs}?tormai')">
+      <xsl:value-of select="'Hungarosaurus tormai'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'h.\p{Zs}?tormai')">
+      <xsl:value-of select="'H. tormai'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'lesothosaurus\p{Zs}?diagnosticus')">
+      <xsl:value-of select="'Lesothosaurus diagnosticus'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'l.\p{Zs}?diagnosticus')">
+      <xsl:value-of select="'L. diagnosticus'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'bienosaurus\p{Zs}?lufengensis')">
+      <xsl:value-of select="'Bienosaurus lufengensis'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'b.\p{Zs}?lufengensis')">
+      <xsl:value-of select="'B. lufengensis'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'fabrosaurus\p{Zs}?australis')">
+      <xsl:value-of select="'Fabrosaurus australis'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'f.\p{Zs}?australis')">
+      <xsl:value-of select="'F. australis'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'chinshakiangosaurus\p{Zs}?chunghoensis')">
+      <xsl:value-of select="'Chinshakiangosaurus chunghoensis'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'c.\p{Zs}?chunghoensis')">
+      <xsl:value-of select="'C. chunghoensis'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'euoplocephalus\p{Zs}?tutus')">
+      <xsl:value-of select="'Euoplocephalus tutus'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'e.\p{Zs}?tutus')">
+      <xsl:value-of select="'E. tutus'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'g\.\p{Zs}?beringei')">
+      <xsl:value-of select="'G. beringei'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'gorilla\p{Zs}?beringei')">
+      <xsl:value-of select="'Gorilla beringei'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'m\.\p{Zs}?assamensis')">
+      <xsl:value-of select="'M. assamensis'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'macaca\p{Zs}?assamensis')">
+      <xsl:value-of select="'Macaca assamensis'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'m\.\p{Zs}?fuscata')">
+      <xsl:value-of select="'M. fuscata'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'macaca\p{Zs}?fuscata')">
+      <xsl:value-of select="'Macaca fuscata'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'m\.\p{Zs}?mulatta')">
+      <xsl:value-of select="'M. mulatta'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'macaca\p{Zs}?mulatta')">
+      <xsl:value-of select="'Macaca mulatta'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'m\.\p{Zs}?nemestrina')">
+      <xsl:value-of select="'M. nemestrina'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'macaca\p{Zs}?nemestrina')">
+      <xsl:value-of select="'Macaca nemestrina'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'m\.\p{Zs}?sphinx')">
+      <xsl:value-of select="'M. sphinx'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'mandrillus\p{Zs}?sphinx')">
+      <xsl:value-of select="'Mandrillus sphinx'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'p\.\p{Zs}?anubis')">
+      <xsl:value-of select="'P. anubis'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'papio\p{Zs}?anubis')">
+      <xsl:value-of select="'Papio anubis'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'p\.\p{Zs}?hamadryas')">
+      <xsl:value-of select="'P. hamadryas'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'papio\p{Zs}?hamadryas')">
+      <xsl:value-of select="'Papio hamadryas'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'p\.\p{Zs}?paniscus')">
+      <xsl:value-of select="'P. paniscus'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'pan\p{Zs}?paniscus')">
+      <xsl:value-of select="'Pan paniscus'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'p\.\p{Zs}?troglodytes')">
+      <xsl:value-of select="'P. troglodytes'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'pan\p{Zs}?troglodytes')">
+      <xsl:value-of select="'Pan troglodytes'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'xenopus')">
+      <xsl:value-of select="'Xenopus'"/>
+    </xsl:when>
+    <xsl:when test="matches($s,'salmonella')">
+      <xsl:value-of select="'Salmonella'"/>
+    </xsl:when>
+    <xsl:otherwise>
+      <xsl:value-of select="'undefined'"/>
+    </xsl:otherwise>
+  </xsl:choose>
+</xsl:function>
+  <xsl:function name="e:code-check">
+    <xsl:param name="s" as="xs:string"/>
+    <xsl:element name="code">
+      <xsl:if test="contains($s,'github')">
+        <xsl:element name="match">
+        <xsl:value-of select="'github '"/>
+        </xsl:element>
+      </xsl:if>
+      <xsl:if test="contains($s,'gitlab')">
+        <xsl:element name="match">
+        <xsl:value-of select="'gitlab '"/>
+        </xsl:element>
+      </xsl:if>
+      <xsl:if test="contains($s,'git.exeter.ac.uk')">
+        <xsl:element name="match">
+          <xsl:value-of select="'git.exeter.ac.uk '"/>
+        </xsl:element>
+      </xsl:if>
+      <xsl:if test="contains($s,'codeplex')">
+        <xsl:element name="match">
+        <xsl:value-of select="'codeplex '"/>
+        </xsl:element>
+      </xsl:if>
+      <xsl:if test="contains($s,'sourceforge')">
+        <xsl:element name="match">
+        <xsl:value-of select="'sourceforge '"/>
+        </xsl:element>
+      </xsl:if>
+      <xsl:if test="contains($s,'bitbucket')">
+        <xsl:element name="match">
+        <xsl:value-of select="'bitbucket '"/>
+        </xsl:element>
+      </xsl:if>
+      <xsl:if test="contains($s,'assembla ')">
+        <xsl:element name="match">
+        <xsl:value-of select="'assembla '"/>
+        </xsl:element>
+      </xsl:if>
+    </xsl:element>
+  </xsl:function>
+  <xsl:function name="e:get-xrefs">
+    <xsl:param name="article"/>
+    <xsl:param name="object-id"/>
+    <xsl:param name="object-type"/>
+    <xsl:variable name="object-no" select="replace($object-id,'[^0-9]','')"/>
+    <xsl:element name="matches">
+      <xsl:for-each select="$article//xref[(@ref-type=$object-type) and not(ancestor::caption)]">
+        <xsl:variable name="rid-no" select="replace(./@rid,'[^0-9]','')"/>
+        <xsl:variable name="text-no" select="tokenize(normalize-space(replace(.,'[^0-9]',' ')),'\p{Zs}')[last()]"/>
+        <xsl:choose>
+          <xsl:when test="./@rid = $object-id">
+            <xsl:element name="match">
+              <xsl:attribute name="sec-id">
+                <xsl:value-of select="./ancestor::sec[1]/@id"/>
+              </xsl:attribute>
+              <xsl:value-of select="self::*"/>
+            </xsl:element>
+          </xsl:when>
+          <xsl:when test="contains(./@rid,'app')"/>
+          <xsl:when test="($rid-no lt $object-no) and (./following-sibling::text()[1] = '–') and (./following-sibling::*[1]/name()='xref') and (number(replace(replace(./following-sibling::xref[1]/@rid,'\-','.'),'[a-z]','')) gt number($object-no))">
+            <xsl:element name="match">
+              <xsl:attribute name="sec-id">
+                <xsl:value-of select="./ancestor::sec[1]/@id"/>
+              </xsl:attribute>
+              <xsl:value-of select="self::*"/>
+            </xsl:element>
+          </xsl:when>
+          <xsl:when test="($rid-no lt $object-no) and contains(.,$object-no) and (contains(.,'Videos') or contains(.,'videos') and contains(.,'–'))">
+            <xsl:element name="match">
+              <xsl:attribute name="sec-id">
+                <xsl:value-of select="./ancestor::sec[1]/@id"/>
+              </xsl:attribute>
+              <xsl:value-of select="self::*"/>
+            </xsl:element>
+          </xsl:when>
+          <xsl:when test="($rid-no lt $object-no) and (contains(.,'Videos') or contains(.,'videos') and contains(.,'—')) and ($text-no gt $object-no)">
+            <xsl:element name="match">
+              <xsl:attribute name="sec-id">
+                <xsl:value-of select="./ancestor::sec[1]/@id"/>
+              </xsl:attribute>
+              <xsl:value-of select="self::*"/>
+            </xsl:element>
+          </xsl:when>
+          <xsl:otherwise/>
+        </xsl:choose>
+      </xsl:for-each>
+    </xsl:element>
+  </xsl:function>
+  <xsl:function name="e:get-iso-pub-date">
+    <xsl:param name="element"/>
+    <xsl:choose>
+      <xsl:when test="$element/ancestor-or-self::article//article-meta/pub-date[(@date-type='publication') or (@date-type='pub')]/month">
+        <xsl:variable name="pub-date" select="$element/ancestor-or-self::article//article-meta/pub-date[(@date-type='publication') or (@date-type='pub')]"/>
+        <xsl:value-of select="concat($pub-date/year,'-',$pub-date/month,'-',$pub-date/day)"/>
+      </xsl:when>
+      <xsl:otherwise/>
+    </xsl:choose>
+  </xsl:function>
+  <xsl:function name="e:get-copyright-holder">
+    <xsl:param name="contrib-group"/>
+    <xsl:variable name="author-count" select="count($contrib-group/contrib[@contrib-type='author'])"/>
+    <xsl:choose>
+      <xsl:when test="$author-count lt 1"/>
+      <xsl:when test="$author-count = 1">
+        <xsl:choose>
+          <xsl:when test="$contrib-group/contrib[@contrib-type='author']/collab">
+            <xsl:value-of select="$contrib-group/contrib[@contrib-type='author']/collab[1]/text()[1]"/>
+          </xsl:when>
+          <xsl:otherwise>
+            <xsl:value-of select="$contrib-group/contrib[@contrib-type='author']/name[1]/surname[1]"/>
+          </xsl:otherwise>
+        </xsl:choose>
+      </xsl:when>
+      <xsl:when test="$author-count = 2">
+        <xsl:choose>
+          <xsl:when test="$contrib-group/contrib[@contrib-type='author']/collab">
+            <xsl:choose>
+              <xsl:when test="$contrib-group/contrib[@contrib-type='author'][1]/collab and $contrib-group/contrib[@contrib-type='author'][2]/collab">
+                <xsl:value-of select="concat($contrib-group/contrib[@contrib-type='author']/collab[1]/text()[1],' and ',$contrib-group/contrib[@contrib-type='author']/collab[2]/text()[1])"/>
+              </xsl:when>
+              <xsl:when test="$contrib-group/contrib[@contrib-type='author'][1]/collab">
+                <xsl:value-of select="concat($contrib-group/contrib[@contrib-type='author'][1]/collab[1]/text()[1],' and ',$contrib-group/contrib[@contrib-type='author'][2]/name[1]/surname[1])"/>
+              </xsl:when>
+              <xsl:otherwise>
+                <xsl:value-of select="concat($contrib-group/contrib[@contrib-type='author'][1]/name[1]/surname[1],' and ',$contrib-group/contrib[@contrib-type='author'][2]/collab[1]/text()[1])"/>
+              </xsl:otherwise>
+            </xsl:choose>
+          </xsl:when>
+          <xsl:otherwise>
+            <xsl:value-of select="concat($contrib-group/contrib[@contrib-type='author'][1]/name[1]/surname[1],' and ',$contrib-group/contrib[@contrib-type='author'][2]/name[1]/surname[1])"/>
+          </xsl:otherwise>
+        </xsl:choose>
+      </xsl:when>
+      
+      <xsl:otherwise>
+        <xsl:variable name="is-equal-contrib" select="if ($contrib-group/contrib[@contrib-type='author'][1]/@equal-contrib='yes') then true() else false()"/>
+        <xsl:choose>
+          <xsl:when test="$is-equal-contrib">
+            
+            <xsl:variable name="equal-contrib-rid" select="$contrib-group/contrib[@contrib-type='author'][1]/xref[starts-with(@rid,'equal-contrib')]/@rid"/>
+            <xsl:variable name="first-authors" select="$contrib-group/contrib[@contrib-type='author' and @equal-contrib='yes' and xref[@rid=$equal-contrib-rid] and not(preceding-sibling::contrib[not(xref[@rid=$equal-contrib-rid])])]"/>
+            <xsl:choose>
+              
+              <xsl:when test="$author-count = 3 and count($first-authors) = 3">
+                <xsl:value-of select="concat(e:get-surname($contrib-group/contrib[@contrib-type='author'][1]),                   ', ',                   e:get-surname($contrib-group/contrib[@contrib-type='author'][2]),                   ' and ',                   e:get-surname($contrib-group/contrib[@contrib-type='author'][3]))"/>
+              </xsl:when>
+              
+              <xsl:when test="count($first-authors) gt 3">
+                <xsl:variable name="first-auth-string" select="string-join(for $auth in $contrib-group/contrib[@contrib-type='author'][position() lt 4] return e:get-surname($auth),', ')"/>
+                <xsl:value-of select="concat($first-auth-string,' et al')"/>
+              </xsl:when>
+              
+              <xsl:otherwise>
+                <xsl:variable name="first-auth-string" select="string-join(for $auth in $first-authors return e:get-surname($auth),', ')"/>
+                <xsl:value-of select="concat($first-auth-string,' et al')"/>
+              </xsl:otherwise>
+            </xsl:choose>
+          </xsl:when>
+          
+          <xsl:otherwise>
+            <xsl:value-of select="concat(e:get-surname($contrib-group/contrib[@contrib-type='author'][1]),' et al')"/>
+          </xsl:otherwise>
+        </xsl:choose>
+      </xsl:otherwise>
+    </xsl:choose>
+  </xsl:function>
+  <xsl:function name="e:get-surname" as="text()">
+    <xsl:param name="contrib"/>
+    <xsl:choose>
+      <xsl:when test="$contrib/collab">
+        <xsl:value-of select="$contrib/collab[1]/text()[1]"/>
+      </xsl:when>
+      <xsl:otherwise>
+        <xsl:value-of select="$contrib//name[1]/surname[1]"/>
+      </xsl:otherwise>
+    </xsl:choose>
+  </xsl:function>
+  <xsl:function name="e:insight-box" as="element()">
+    <xsl:param name="box" as="xs:string"/>
+    <xsl:param name="cite-text" as="xs:string"/>
+    <xsl:variable name="box-text" select="substring-after(substring-after($box,'article'),' ')"/> 
+    
+    <xsl:element name="list">
+      <xsl:for-each select="tokenize($cite-text,'\p{Zs}')">
+        <xsl:choose>
+          <xsl:when test="contains($box-text,.)"/>
+          <xsl:otherwise>
+            <xsl:element name="item">
+              <xsl:attribute name="type">cite</xsl:attribute>
+              <xsl:value-of select="."/>
+            </xsl:element>
+          </xsl:otherwise>
+        </xsl:choose>
+      </xsl:for-each>
+      <xsl:for-each select="tokenize($box-text,'\p{Zs}')">
+        <xsl:choose>
+          <xsl:when test="contains($cite-text,.)"/>
+          <xsl:otherwise>
+            <xsl:element name="item">
+              <xsl:attribute name="type">box</xsl:attribute>
+              <xsl:value-of select="."/>
+            </xsl:element>
+          </xsl:otherwise>
+        </xsl:choose>
+      </xsl:for-each>
+    </xsl:element>
+  </xsl:function>
+  <let name="latin-regex" value="'in\p{Zs}+vitro|ex\p{Zs}+vitro|in\p{Zs}+vivo|ex\p{Zs}+vivo|a\p{Zs}+priori|a\p{Zs}+posteriori|de\p{Zs}+novo|in\p{Zs}+utero|in\p{Zs}+natura|in\p{Zs}+situ|in\p{Zs}+planta|in\p{Zs}+cellulo|rete\p{Zs}+mirabile|nomen\p{Zs}+novum| sensu |ad\p{Zs}+libitum|in\p{Zs}+ovo'"/>
+  <xsl:function name="e:get-latin-terms" as="element()">
+    <xsl:param name="article" as="element()"/>
+    <xsl:param name="regex" as="xs:string"/>
+    
+    <xsl:variable name="roman-text" select="lower-case(       string-join(for $x in $article/*[local-name() = 'body' or local-name() = 'back']//*       return       if ($x/ancestor-or-self::sec[@sec-type='additional-information']) then ()       else if ($x/ancestor-or-self::ref-list) then ()       else if ($x/local-name() = 'italic') then ()       else $x/text(),' '))"/>
+    <xsl:variable name="italic-text" select="lower-case(string-join($article//*:italic[not(ancestor::ref-list) and not(ancestor::sec[@sec-type='additional-information'])],' '))"/>
+    
+    
+    <xsl:element name="result">
+      <xsl:choose>
+        <xsl:when test="matches($roman-text,$regex)">
+          <xsl:element name="list">
+            <xsl:attribute name="list-type">roman</xsl:attribute>
+            <xsl:for-each select="tokenize($regex,'\|')">
+              <xsl:variable name="display" select="replace(replace(.,'\\p\{Zs\}\+',' '),'^ | $','')"/>
+              <xsl:element name="match">
+                <xsl:attribute name="count">
+                  <xsl:value-of select="count(tokenize($roman-text,.)) - 1"/>
+                </xsl:attribute>
+                <xsl:value-of select="$display"/>
+              </xsl:element>
+            </xsl:for-each>
+          </xsl:element>
+        </xsl:when>
+        <xsl:otherwise>
+          <xsl:element name="list">
+            <xsl:attribute name="list-type">roman</xsl:attribute>
+          </xsl:element>
+        </xsl:otherwise>
+      </xsl:choose>
+      <xsl:choose>
+        <xsl:when test="matches($italic-text,$regex)">
+          <xsl:element name="list">
+            <xsl:attribute name="list-type">italic</xsl:attribute>
+            <xsl:for-each select="tokenize($regex,'\|')">
+              <xsl:variable name="display" select="replace(.,'\\p\{Zs\}\+',' ')"/>
+              <xsl:element name="match">
+                <xsl:attribute name="count">
+                  <xsl:value-of select="count(tokenize($italic-text,.)) - 1"/>
+                </xsl:attribute>
+                <xsl:value-of select="$display"/>
+              </xsl:element>
+            </xsl:for-each>
+          </xsl:element>
+        </xsl:when>
+        <xsl:otherwise>
+          <xsl:element name="list">
+            <xsl:attribute name="list-type">italic</xsl:attribute>
+          </xsl:element>
+        </xsl:otherwise>
+      </xsl:choose>
+    </xsl:element>
+  </xsl:function>
+  <xsl:function name="e:print-latin-terms" as="xs:string">
+    <xsl:param name="list" as="element()"/>
+    <xsl:value-of select="string-join(       for $term in $list//*:match[@count != '0']        return if (number($term/@count) gt 1) then concat($term/@count,' instances of ',$term)       else concat($term/@count,' instance of ',$term)       ,', ')"/>
+  </xsl:function>
+  <xsl:function name="e:list-panels">
+    <xsl:param name="caption" as="xs:string"/>
+    <xsl:element name="list">
+      <xsl:for-each select="tokenize($caption,'\.\p{Zs}+')">
+        <xsl:if test="matches(.,'^[B-K]\p{P}?[A-K]?\.?\p{Zs}+')">
+          <xsl:element name="item">
+            <xsl:attribute name="token">
+              <xsl:value-of select="substring-before(.,' ')"/>
+            </xsl:attribute>
+            <xsl:value-of select="."/>
+          </xsl:element>
+        </xsl:if>
+      </xsl:for-each>
+    </xsl:element>
+  </xsl:function>
+  <xsl:function name="e:get-weekday" as="xs:integer?">
+    <xsl:param name="date" as="xs:anyAtomicType?"/>
+    <xsl:sequence select="       if (empty($date)) then ()       else xs:integer((xs:date($date) - xs:date('1901-01-06')) div xs:dayTimeDuration('P1D')) mod 7       "/>
+  </xsl:function>
+  <xsl:function name="e:line-count" as="xs:integer">
+    <xsl:param name="arg" as="xs:string?"/>
+    
+    <xsl:sequence select="count(tokenize($arg,'(\r\n?|\n\r?)'))"/>
+    
+  </xsl:function>
+  <pattern id="article-metadata">
+    <rule context="pub-date" id="pub-date-tests">
+      <let name="allowed-attributes" value="('publication-format','date-type','iso-8601-date')"/>
+      <assert test="@date-type" role="error" id="pub-date-test-7">pub-date must have the attribute date-type.</assert>
+    </rule>
+  </pattern>
+  <pattern id="root-pattern">
+    <rule context="root" id="root-rule">
+      <assert test="descendant::pub-date" role="error" id="pub-date-tests-xspec-assert">pub-date must be present.</assert>
+    </rule>
+  </pattern>
+</schema>
\ No newline at end of file
diff --git a/test/xspec/schematron.sch b/test/xspec/schematron.sch
index adcde6649c..d921b15de7 100644
--- a/test/xspec/schematron.sch
+++ b/test/xspec/schematron.sch
@@ -2122,21 +2122,36 @@
       
     </rule>
   </pattern>
-  <pattern id="pub-date-tests-1-pattern">
-    <rule context="pub-date[not(@pub-type='collection')]" id="pub-date-tests-1">
+  <pattern id="pub-date-tests-pattern">
+    <rule context="pub-date" id="pub-date-tests">
+      <let name="allowed-attributes" value="('publication-format','date-type','iso-8601-date')"/>
       
-      <assert test="matches(day[1],'^[0-9]{2}$')" role="warning" id="pre-pub-date-test-1">day is not present in pub-date.</assert>
-      
-      <assert test="matches(day[1],'^[0-9]{2}$')" role="error" id="final-pub-date-test-1">pub-date must contain day in the format 00. Currently it is '<value-of select="day"/>'.</assert>
-      
-      <assert test="matches(month[1],'^[0-9]{2}$')" role="warning" id="pre-pub-date-test-2">month is not present in pub-date.</assert>
-      
-      <assert test="matches(month[1],'^[0-9]{2}$')" role="error" id="final-pub-date-test-2">pub-date must contain month in the format 00. Currently it is '<value-of select="month"/>'.</assert>
-      
-      <assert test="matches(year[1],'^[0-9]{4}$')" role="error" id="pub-date-test-3">pub-date must contain year in the format 0000. Currently it is '<value-of select="year"/>'.</assert>
+      <assert test="parent::article-meta" role="error" id="pub-date-test-1">pub-date can only be a child of article-meta. This one is a child of <value-of select="parent::*/name()"/>
+      </assert>
+
+      <report test="@*[not(name()=$allowed-attributes)]" role="error" id="pub-date-test-2">Only the following attributes are permitted on pub-date. This one has the following unallowed attributes: <value-of select="string-join(@*[not(name()=$allowed-attributes)]/name(),'; ')"/>.</report>
+
+      <report test="@publication-format and @publication-format!='electronic'" role="error" id="pub-date-test-3">pub-date has the attribute publication-format, but the value is "<value-of select="@publication-format"/>". The only permitted value is "electronic".</report>
+
+      <report test="@date-type and @date-type!='publication'" role="error" id="pub-date-test-4">pub-date has the attribute date-type, but the value is "<value-of select="@date-type"/>". The only permitted value is "publication".</report>
+
+      <report test="preceding-sibling::pub-date" role="error" id="pub-date-test-5">There can only be one pub-date in article-meta. But this pub-date has a preceding one.</report>
+
+      <assert test="@publication-format" role="error" id="pub-date-test-6">pub-date must have the attribute publication-format.</assert>
+
+      <assert test="@date-type" role="error" id="pub-date-test-7">pub-date must have the attribute date-type.</assert>
       
     </rule>
   </pattern>
+  <pattern id="pub-date-child-tests-pattern">
+    <rule context="pub-date/*" id="pub-date-child-tests">
+      <let name="allowed-children" value="('day','month','year')"/>
+
+    <assert test="name()=$allowed-children" role="error" id="pub-date-child-test-1">
+        <value-of select="name()"/> is not allowed as a child of pub-date. The only permitted elements are <value-of select="string-join($allowed-children,'; ')"/>.</assert>
+
+     </rule>
+  </pattern>
   <pattern id="press-pub-date-pattern">
     <rule context="pub-date[not(@pub-type='collection') and day and month and year][concat(year[1],'-',month[1],'-',day[1]) gt format-date(current-date(), '[Y0001]-[M01]-[D01]')]" id="press-pub-date">
       <let name="date" value="concat(year[1],'-',month[1],'-',day[1])"/>
@@ -2145,17 +2160,6 @@
       
     </rule>
   </pattern>
-  <pattern id="pub-date-tests-2-pattern">
-    <rule context="pub-date[@pub-type='collection']" id="pub-date-tests-2">
-      
-      <assert test="matches(year[1],'^[0-9]{4}$')" role="error" id="pub-date-test-4">date must contain year in the format 0000. Currently it is '<value-of select="year"/>'.</assert>
-      
-      <report test="*/local-name() != 'year'" role="error" id="pub-date-test-5">pub-date[@pub-type='collection'] can only contain a year element.</report>
-      
-      <assert test="year[1] = parent::*/pub-date[@publication-format='electronic'][@date-type='publication']/year[1]" role="error" id="pub-date-test-6">pub-date[@pub-type='collection'] year must be the same as pub-date[@publication-format='electronic'][@date-type='publication'] year.</assert>
-      
-    </rule>
-  </pattern>
   <pattern id="pub-history-tests-pattern">
     <rule context="pub-history" id="pub-history-tests">
       
@@ -9573,9 +9577,9 @@
       <assert test="descendant::month[not(parent::string-date)]" role="error" id="month-tests-xspec-assert">month[not(parent::string-date)] must be present.</assert>
       <assert test="descendant::year[ancestor::article-meta]" role="error" id="year-article-meta-tests-xspec-assert">year[ancestor::article-meta] must be present.</assert>
       <assert test="descendant::year[ancestor::element-citation]" role="error" id="year-element-citation-tests-xspec-assert">year[ancestor::element-citation] must be present.</assert>
-      <assert test="descendant::pub-date[not(@pub-type='collection')]" role="error" id="pub-date-tests-1-xspec-assert">pub-date[not(@pub-type='collection')] must be present.</assert>
+      <assert test="descendant::pub-date" role="error" id="pub-date-tests-xspec-assert">pub-date must be present.</assert>
+      <assert test="descendant::pub-date/*" role="error" id="pub-date-child-tests-xspec-assert">pub-date/* must be present.</assert>
       <assert test="descendant::pub-date[not(@pub-type='collection') and day and month and year][concat(year[1],'-',month[1],'-',day[1]) gt format-date(current-date(), '[Y0001]-[M01]-[D01]')]" role="error" id="press-pub-date-xspec-assert">pub-date[not(@pub-type='collection') and day and month and year][concat(year[1],'-',month[1],'-',day[1]) gt format-date(current-date(), '[Y0001]-[M01]-[D01]')] must be present.</assert>
-      <assert test="descendant::pub-date[@pub-type='collection']" role="error" id="pub-date-tests-2-xspec-assert">pub-date[@pub-type='collection'] must be present.</assert>
       <assert test="descendant::pub-history" role="error" id="pub-history-tests-xspec-assert">pub-history must be present.</assert>
       <assert test="descendant::event" role="error" id="event-tests-xspec-assert">event must be present.</assert>
       <assert test="descendant::event[date[@date-type='reviewed-preprint']/@iso-8601-date != '']" role="error" id="rp-event-tests-xspec-assert">event[date[@date-type='reviewed-preprint']/@iso-8601-date != ''] must be present.</assert>
diff --git a/test/xspec/schematron.xspec b/test/xspec/schematron.xspec
index de7af5a8db..c40eb015ce 100644
--- a/test/xspec/schematron.xspec
+++ b/test/xspec/schematron.xspec
@@ -1954,100 +1954,100 @@
         <x:expect-not-assert id="year-element-citation-tests-xspec-assert" role="error"/>
       </x:scenario>
     </x:scenario>
-    <x:scenario label="pub-date-tests-1">
-      <x:scenario label="pre-pub-date-test-1-pass">
-        <x:context href="../tests/gen/pub-date-tests-1/pre-pub-date-test-1/pass.xml"/>
-        <x:expect-not-assert id="pre-pub-date-test-1" role="warning"/>
-        <x:expect-not-assert id="pub-date-tests-1-xspec-assert" role="error"/>
-      </x:scenario>
-      <x:scenario label="pre-pub-date-test-1-fail">
-        <x:context href="../tests/gen/pub-date-tests-1/pre-pub-date-test-1/fail.xml"/>
-        <x:expect-assert id="pre-pub-date-test-1" role="warning"/>
-        <x:expect-not-assert id="pub-date-tests-1-xspec-assert" role="error"/>
-      </x:scenario>
-      <x:scenario label="final-pub-date-test-1-pass">
-        <x:context href="../tests/gen/pub-date-tests-1/final-pub-date-test-1/pass.xml"/>
-        <x:expect-not-assert id="final-pub-date-test-1" role="error"/>
-        <x:expect-not-assert id="pub-date-tests-1-xspec-assert" role="error"/>
-      </x:scenario>
-      <x:scenario label="final-pub-date-test-1-fail">
-        <x:context href="../tests/gen/pub-date-tests-1/final-pub-date-test-1/fail.xml"/>
-        <x:expect-assert id="final-pub-date-test-1" role="error"/>
-        <x:expect-not-assert id="pub-date-tests-1-xspec-assert" role="error"/>
-      </x:scenario>
-      <x:scenario label="pre-pub-date-test-2-pass">
-        <x:context href="../tests/gen/pub-date-tests-1/pre-pub-date-test-2/pass.xml"/>
-        <x:expect-not-assert id="pre-pub-date-test-2" role="warning"/>
-        <x:expect-not-assert id="pub-date-tests-1-xspec-assert" role="error"/>
-      </x:scenario>
-      <x:scenario label="pre-pub-date-test-2-fail">
-        <x:context href="../tests/gen/pub-date-tests-1/pre-pub-date-test-2/fail.xml"/>
-        <x:expect-assert id="pre-pub-date-test-2" role="warning"/>
-        <x:expect-not-assert id="pub-date-tests-1-xspec-assert" role="error"/>
-      </x:scenario>
-      <x:scenario label="final-pub-date-test-2-pass">
-        <x:context href="../tests/gen/pub-date-tests-1/final-pub-date-test-2/pass.xml"/>
-        <x:expect-not-assert id="final-pub-date-test-2" role="error"/>
-        <x:expect-not-assert id="pub-date-tests-1-xspec-assert" role="error"/>
-      </x:scenario>
-      <x:scenario label="final-pub-date-test-2-fail">
-        <x:context href="../tests/gen/pub-date-tests-1/final-pub-date-test-2/fail.xml"/>
-        <x:expect-assert id="final-pub-date-test-2" role="error"/>
-        <x:expect-not-assert id="pub-date-tests-1-xspec-assert" role="error"/>
+    <x:scenario label="pub-date-tests">
+      <x:scenario label="pub-date-test-1-pass">
+        <x:context href="../tests/gen/pub-date-tests/pub-date-test-1/pass.xml"/>
+        <x:expect-not-assert id="pub-date-test-1" role="error"/>
+        <x:expect-not-assert id="pub-date-tests-xspec-assert" role="error"/>
+      </x:scenario>
+      <x:scenario label="pub-date-test-1-fail">
+        <x:context href="../tests/gen/pub-date-tests/pub-date-test-1/fail.xml"/>
+        <x:expect-assert id="pub-date-test-1" role="error"/>
+        <x:expect-not-assert id="pub-date-tests-xspec-assert" role="error"/>
+      </x:scenario>
+      <x:scenario label="pub-date-test-2-pass">
+        <x:context href="../tests/gen/pub-date-tests/pub-date-test-2/pass.xml"/>
+        <x:expect-not-report id="pub-date-test-2" role="error"/>
+        <x:expect-not-assert id="pub-date-tests-xspec-assert" role="error"/>
+      </x:scenario>
+      <x:scenario label="pub-date-test-2-fail">
+        <x:context href="../tests/gen/pub-date-tests/pub-date-test-2/fail.xml"/>
+        <x:expect-report id="pub-date-test-2" role="error"/>
+        <x:expect-not-assert id="pub-date-tests-xspec-assert" role="error"/>
       </x:scenario>
       <x:scenario label="pub-date-test-3-pass">
-        <x:context href="../tests/gen/pub-date-tests-1/pub-date-test-3/pass.xml"/>
-        <x:expect-not-assert id="pub-date-test-3" role="error"/>
-        <x:expect-not-assert id="pub-date-tests-1-xspec-assert" role="error"/>
+        <x:context href="../tests/gen/pub-date-tests/pub-date-test-3/pass.xml"/>
+        <x:expect-not-report id="pub-date-test-3" role="error"/>
+        <x:expect-not-assert id="pub-date-tests-xspec-assert" role="error"/>
       </x:scenario>
       <x:scenario label="pub-date-test-3-fail">
-        <x:context href="../tests/gen/pub-date-tests-1/pub-date-test-3/fail.xml"/>
-        <x:expect-assert id="pub-date-test-3" role="error"/>
-        <x:expect-not-assert id="pub-date-tests-1-xspec-assert" role="error"/>
+        <x:context href="../tests/gen/pub-date-tests/pub-date-test-3/fail.xml"/>
+        <x:expect-report id="pub-date-test-3" role="error"/>
+        <x:expect-not-assert id="pub-date-tests-xspec-assert" role="error"/>
       </x:scenario>
-    </x:scenario>
-    <x:scenario label="press-pub-date">
-      <x:scenario label="press-pub-date-check-pass">
-        <x:context href="../tests/gen/press-pub-date/press-pub-date-check/pass.xml"/>
-        <x:expect-not-report id="press-pub-date-check" role="warning"/>
-        <x:expect-not-assert id="press-pub-date-xspec-assert" role="error"/>
-      </x:scenario>
-      <x:scenario label="press-pub-date-check-fail">
-        <x:context href="../tests/gen/press-pub-date/press-pub-date-check/fail.xml"/>
-        <x:expect-report id="press-pub-date-check" role="warning"/>
-        <x:expect-not-assert id="press-pub-date-xspec-assert" role="error"/>
-      </x:scenario>
-    </x:scenario>
-    <x:scenario label="pub-date-tests-2">
       <x:scenario label="pub-date-test-4-pass">
-        <x:context href="../tests/gen/pub-date-tests-2/pub-date-test-4/pass.xml"/>
-        <x:expect-not-assert id="pub-date-test-4" role="error"/>
-        <x:expect-not-assert id="pub-date-tests-2-xspec-assert" role="error"/>
+        <x:context href="../tests/gen/pub-date-tests/pub-date-test-4/pass.xml"/>
+        <x:expect-not-report id="pub-date-test-4" role="error"/>
+        <x:expect-not-assert id="pub-date-tests-xspec-assert" role="error"/>
       </x:scenario>
       <x:scenario label="pub-date-test-4-fail">
-        <x:context href="../tests/gen/pub-date-tests-2/pub-date-test-4/fail.xml"/>
-        <x:expect-assert id="pub-date-test-4" role="error"/>
-        <x:expect-not-assert id="pub-date-tests-2-xspec-assert" role="error"/>
+        <x:context href="../tests/gen/pub-date-tests/pub-date-test-4/fail.xml"/>
+        <x:expect-report id="pub-date-test-4" role="error"/>
+        <x:expect-not-assert id="pub-date-tests-xspec-assert" role="error"/>
       </x:scenario>
       <x:scenario label="pub-date-test-5-pass">
-        <x:context href="../tests/gen/pub-date-tests-2/pub-date-test-5/pass.xml"/>
+        <x:context href="../tests/gen/pub-date-tests/pub-date-test-5/pass.xml"/>
         <x:expect-not-report id="pub-date-test-5" role="error"/>
-        <x:expect-not-assert id="pub-date-tests-2-xspec-assert" role="error"/>
+        <x:expect-not-assert id="pub-date-tests-xspec-assert" role="error"/>
       </x:scenario>
       <x:scenario label="pub-date-test-5-fail">
-        <x:context href="../tests/gen/pub-date-tests-2/pub-date-test-5/fail.xml"/>
+        <x:context href="../tests/gen/pub-date-tests/pub-date-test-5/fail.xml"/>
         <x:expect-report id="pub-date-test-5" role="error"/>
-        <x:expect-not-assert id="pub-date-tests-2-xspec-assert" role="error"/>
+        <x:expect-not-assert id="pub-date-tests-xspec-assert" role="error"/>
       </x:scenario>
       <x:scenario label="pub-date-test-6-pass">
-        <x:context href="../tests/gen/pub-date-tests-2/pub-date-test-6/pass.xml"/>
+        <x:context href="../tests/gen/pub-date-tests/pub-date-test-6/pass.xml"/>
         <x:expect-not-assert id="pub-date-test-6" role="error"/>
-        <x:expect-not-assert id="pub-date-tests-2-xspec-assert" role="error"/>
+        <x:expect-not-assert id="pub-date-tests-xspec-assert" role="error"/>
       </x:scenario>
       <x:scenario label="pub-date-test-6-fail">
-        <x:context href="../tests/gen/pub-date-tests-2/pub-date-test-6/fail.xml"/>
+        <x:context href="../tests/gen/pub-date-tests/pub-date-test-6/fail.xml"/>
         <x:expect-assert id="pub-date-test-6" role="error"/>
-        <x:expect-not-assert id="pub-date-tests-2-xspec-assert" role="error"/>
+        <x:expect-not-assert id="pub-date-tests-xspec-assert" role="error"/>
+      </x:scenario>
+      <x:scenario label="pub-date-test-7-pass">
+        <x:context href="../tests/gen/pub-date-tests/pub-date-test-7/pass.xml"/>
+        <x:expect-not-assert id="pub-date-test-7" role="error"/>
+        <x:expect-not-assert id="pub-date-tests-xspec-assert" role="error"/>
+      </x:scenario>
+      <x:scenario label="pub-date-test-7-fail">
+        <x:context href="../tests/gen/pub-date-tests/pub-date-test-7/fail.xml"/>
+        <x:expect-assert id="pub-date-test-7" role="error"/>
+        <x:expect-not-assert id="pub-date-tests-xspec-assert" role="error"/>
+      </x:scenario>
+    </x:scenario>
+    <x:scenario label="pub-date-child-tests">
+      <x:scenario label="pub-date-child-test-1-pass">
+        <x:context href="../tests/gen/pub-date-child-tests/pub-date-child-test-1/pass.xml"/>
+        <x:expect-not-assert id="pub-date-child-test-1" role="error"/>
+        <x:expect-not-assert id="pub-date-child-tests-xspec-assert" role="error"/>
+      </x:scenario>
+      <x:scenario label="pub-date-child-test-1-fail">
+        <x:context href="../tests/gen/pub-date-child-tests/pub-date-child-test-1/fail.xml"/>
+        <x:expect-assert id="pub-date-child-test-1" role="error"/>
+        <x:expect-not-assert id="pub-date-child-tests-xspec-assert" role="error"/>
+      </x:scenario>
+    </x:scenario>
+    <x:scenario label="press-pub-date">
+      <x:scenario label="press-pub-date-check-pass">
+        <x:context href="../tests/gen/press-pub-date/press-pub-date-check/pass.xml"/>
+        <x:expect-not-report id="press-pub-date-check" role="warning"/>
+        <x:expect-not-assert id="press-pub-date-xspec-assert" role="error"/>
+      </x:scenario>
+      <x:scenario label="press-pub-date-check-fail">
+        <x:context href="../tests/gen/press-pub-date/press-pub-date-check/fail.xml"/>
+        <x:expect-report id="press-pub-date-check" role="warning"/>
+        <x:expect-not-assert id="press-pub-date-xspec-assert" role="error"/>
       </x:scenario>
     </x:scenario>
     <x:scenario label="pub-history-tests">