From 312f046aef0ceecee5638aebb954bdc8e0fc1fa2 Mon Sep 17 00:00:00 2001 From: Ernest Guevarra Date: Sat, 30 Nov 2024 21:27:12 +0000 Subject: [PATCH] set environment variables for render --- .github/workflows/publish.yml | 2 ++ 01-tools.qmd | 8 ++++---- index.qmd | 2 +- 3 files changed, 7 insertions(+), 5 deletions(-) diff --git a/.github/workflows/publish.yml b/.github/workflows/publish.yml index c9555bc..4e85661 100644 --- a/.github/workflows/publish.yml +++ b/.github/workflows/publish.yml @@ -54,6 +54,8 @@ jobs: - name: Render document run: | quarto render index.qmd + env: + AIRTABLE_API_KEY: ${{ env.AIRTABLE_API_KEY }} - name: Deploy 🚀 uses: JamesIves/github-pages-deploy-action@v4 diff --git a/01-tools.qmd b/01-tools.qmd index e2717b5..14878a9 100644 --- a/01-tools.qmd +++ b/01-tools.qmd @@ -1,8 +1,8 @@ -# Tools {#tools} +# Tools {#sec-tools} -The Research Information Gateway (RIG) is currently using the following set of tools for database development and maintenance. +The Africa CDC Database is currently using the following set of tools for database development and maintenance. -## Airtable {#airtable} +## Airtable {#sec-airtable} ### What is Airtable? @@ -14,7 +14,7 @@ Airtable also offers a variety of collaboration features, including real-time sy Airtable's flexibility, customizability, and features that support collaboration along with its spreadsheet-style interface that is familiar to most that have used other spreadsheet software such as Microsoft Excel or Google Sheets are the key reasons why it was chosen to be the database tool for RIG. -This [section][airtable] will provide an overview of Airtable and good practices for designing data models in relational databases. +@sec-airtable provides an overview of Airtable and good practices for designing data models in relational databases. ### Key Terms diff --git a/index.qmd b/index.qmd index 43258f2..99a7f43 100644 --- a/index.qmd +++ b/index.qmd @@ -20,4 +20,4 @@ This is a handbook created as a how-to manual for the development and maintenanc ## About the database {#about-database} -[EcoHelth Alliance](https://www.ecohealthalliance.org/) is supporting the creation of a database of active infectious disease research activities and research scientists in Africa. The database contains information about scientific research being conducted on the African continent that has particular relevance to understanding, detecting and responding to zoonotic pathogens. EHA is building a detailed, searchable, and visual database (e.g. via a dashboard) populated with information about major (e.g. multi-year) and active One Health research projects that includes subject matter, duration, geographical locations, key personnel, and links to publicly available reports, preprints and publications relevant to zoonoses. Examples of research areas may include epidemiological (syndrome based or disease specific), ecological (studies looking at potential reservoirs or animal hosts for zoonotic pathogens and spillover into humans or livestock); basic science (e.g. virology, bacteriology; serology); clinical (vaccine or therapeutic trials); or sociological (e.g. behavioral risk assessments or behavioral intervention studies) or any other preliminary public health findings. A particularly important view within the database includes a directory of subject matter experts associated with research across the continent. This roster view can be used by public health practitioners to engage expert consultations as needed to support training activities, surveillance or outbreak response, for example. +[EcoHealth Alliance](https://www.ecohealthalliance.org/) is supporting the creation of a database of active infectious disease research activities and research scientists in Africa. The database contains information about scientific research being conducted on the African continent that has particular relevance to understanding, detecting and responding to zoonotic pathogens. EHA is building a detailed, searchable, and visual database (e.g. via a dashboard) populated with information about major (e.g. multi-year) and active One Health research projects that includes subject matter, duration, geographical locations, key personnel, and links to publicly available reports, preprints and publications relevant to zoonoses. Examples of research areas may include epidemiological (syndrome based or disease specific), ecological (studies looking at potential reservoirs or animal hosts for zoonotic pathogens and spillover into humans or livestock); basic science (e.g. virology, bacteriology; serology); clinical (vaccine or therapeutic trials); or sociological (e.g. behavioral risk assessments or behavioral intervention studies) or any other preliminary public health findings. A particularly important view within the database includes a directory of subject matter experts associated with research across the continent. This roster view can be used by public health practitioners to engage expert consultations as needed to support training activities, surveillance or outbreak response, for example.