From 4db457ee207eccfcdf689fbf3e5c7b628269e82e Mon Sep 17 00:00:00 2001
From: lfaino <M3Fw3K2h>
Date: Wed, 24 Oct 2018 08:26:32 +0200
Subject: [PATCH 1/3] V2.0

---
 Dockerfile | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/Dockerfile b/Dockerfile
index e4749e4d..3d8b03b4 100755
--- a/Dockerfile
+++ b/Dockerfile
@@ -18,7 +18,7 @@ RUN pip3 install numpy biopython==1.68 bcbio-gff==0.6.4 pandas==0.19.1 pybedtool
 WORKDIR /opt/
 
 
-RUN git clone -b dev --single-branch https://github.com/lfaino/LoReAn.git
+RUN git clone https://github.com/lfaino/LoReAn.git
 
 WORKDIR /opt/LoReAn/third_party/software/
 

From e13d3ef83c24a6dc308566391d728c82553af832 Mon Sep 17 00:00:00 2001
From: lfaino <M3Fw3K2h>
Date: Wed, 24 Oct 2018 08:30:03 +0200
Subject: [PATCH 2/3] V2.0

---
 Dockerfile | 1 -
 1 file changed, 1 deletion(-)

diff --git a/Dockerfile b/Dockerfile
index 3d8b03b4..b68be949 100755
--- a/Dockerfile
+++ b/Dockerfile
@@ -17,7 +17,6 @@ RUN pip3 install numpy biopython==1.68 bcbio-gff==0.6.4 pandas==0.19.1 pybedtool
 
 WORKDIR /opt/
 
-
 RUN git clone https://github.com/lfaino/LoReAn.git
 
 WORKDIR /opt/LoReAn/third_party/software/

From e8ac2b253f415c234aefd41b7981fab9bc6ff8f4 Mon Sep 17 00:00:00 2001
From: lfaino <M3Fw3K2h>
Date: Wed, 24 Oct 2018 08:32:41 +0200
Subject: [PATCH 3/3] removed files

---
 _windows/laf.xml       |  5 -----
 codestyles/Default.xml |  3 ---
 colors.scheme.xml      |  5 -----
 editor.xml             |  5 -----
 find.xml               |  7 -------
 markdown.xml           |  5 -----
 notifications.xml      |  7 -------
 vcs.xml                | 12 ------------
 8 files changed, 49 deletions(-)
 delete mode 100644 _windows/laf.xml
 delete mode 100644 codestyles/Default.xml
 delete mode 100644 colors.scheme.xml
 delete mode 100644 editor.xml
 delete mode 100644 find.xml
 delete mode 100644 markdown.xml
 delete mode 100644 notifications.xml
 delete mode 100644 vcs.xml

diff --git a/_windows/laf.xml b/_windows/laf.xml
deleted file mode 100644
index c1f98d95..00000000
--- a/_windows/laf.xml
+++ /dev/null
@@ -1,5 +0,0 @@
-<application>
-  <component name="LafManager">
-    <laf class-name="com.intellij.ide.ui.laf.darcula.DarculaLaf" />
-  </component>
-</application>
\ No newline at end of file
diff --git a/codestyles/Default.xml b/codestyles/Default.xml
deleted file mode 100644
index 7c376d36..00000000
--- a/codestyles/Default.xml
+++ /dev/null
@@ -1,3 +0,0 @@
-<code_scheme name="Default" version="173">
-  <option name="LINE_SEPARATOR" value="&#10;" />
-</code_scheme>
\ No newline at end of file
diff --git a/colors.scheme.xml b/colors.scheme.xml
deleted file mode 100644
index 39308cdb..00000000
--- a/colors.scheme.xml
+++ /dev/null
@@ -1,5 +0,0 @@
-<application>
-  <component name="EditorColorsManagerImpl">
-    <global_color_scheme name="Darcula" />
-  </component>
-</application>
\ No newline at end of file
diff --git a/editor.xml b/editor.xml
deleted file mode 100644
index 672c53ef..00000000
--- a/editor.xml
+++ /dev/null
@@ -1,5 +0,0 @@
-<application>
-  <component name="EditorSettings">
-    <option name="SHOW_QUICK_DOC_ON_MOUSE_OVER_ELEMENT" value="true" />
-  </component>
-</application>
\ No newline at end of file
diff --git a/find.xml b/find.xml
deleted file mode 100644
index 965789ef..00000000
--- a/find.xml
+++ /dev/null
@@ -1,7 +0,0 @@
-<application>
-  <component name="FindSettings">
-    <option name="customScope" value="All Places" />
-    <option name="defaultScopeName" value="All Places" />
-    <option name="SEARCH_SCOPE" value="All Places" />
-  </component>
-</application>
\ No newline at end of file
diff --git a/markdown.xml b/markdown.xml
deleted file mode 100644
index 92e74be4..00000000
--- a/markdown.xml
+++ /dev/null
@@ -1,5 +0,0 @@
-<application>
-  <component name="MarkdownApplicationSettings">
-    <MarkdownCssSettings />
-  </component>
-</application>
\ No newline at end of file
diff --git a/notifications.xml b/notifications.xml
deleted file mode 100644
index 4af5c843..00000000
--- a/notifications.xml
+++ /dev/null
@@ -1,7 +0,0 @@
-<application>
-  <component name="NotificationConfiguration">
-    <notification groupId="PyCharm Professional Advertiser" displayType="STICKY_BALLOON" />
-    <notification groupId="Python Compatibility Inspection Advertiser" displayType="STICKY_BALLOON" />
-    <notification groupId="Remote Desktop" />
-  </component>
-</application>
\ No newline at end of file
diff --git a/vcs.xml b/vcs.xml
deleted file mode 100644
index 9679914c..00000000
--- a/vcs.xml
+++ /dev/null
@@ -1,12 +0,0 @@
-<application>
-  <component name="GitRememberedInputs">
-    <option name="visitedUrls">
-      <list>
-        <UrlAndUserName>
-          <option name="url" value="http://github.com" />
-          <option name="userName" value="lfaino" />
-        </UrlAndUserName>
-      </list>
-    </option>
-  </component>
-</application>
\ No newline at end of file