diff --git a/Dockerfile b/Dockerfile
index e4749e4d..b68be949 100755
--- a/Dockerfile
+++ b/Dockerfile
@@ -17,8 +17,7 @@ RUN pip3 install numpy biopython==1.68 bcbio-gff==0.6.4 pandas==0.19.1 pybedtool
 
 WORKDIR /opt/
 
-
-RUN git clone -b dev --single-branch https://github.com/lfaino/LoReAn.git
+RUN git clone https://github.com/lfaino/LoReAn.git
 
 WORKDIR /opt/LoReAn/third_party/software/
 
diff --git a/_windows/laf.xml b/_windows/laf.xml
deleted file mode 100644
index c1f98d95..00000000
--- a/_windows/laf.xml
+++ /dev/null
@@ -1,5 +0,0 @@
-<application>
-  <component name="LafManager">
-    <laf class-name="com.intellij.ide.ui.laf.darcula.DarculaLaf" />
-  </component>
-</application>
\ No newline at end of file
diff --git a/codestyles/Default.xml b/codestyles/Default.xml
deleted file mode 100644
index 7c376d36..00000000
--- a/codestyles/Default.xml
+++ /dev/null
@@ -1,3 +0,0 @@
-<code_scheme name="Default" version="173">
-  <option name="LINE_SEPARATOR" value="&#10;" />
-</code_scheme>
\ No newline at end of file
diff --git a/colors.scheme.xml b/colors.scheme.xml
deleted file mode 100644
index 39308cdb..00000000
--- a/colors.scheme.xml
+++ /dev/null
@@ -1,5 +0,0 @@
-<application>
-  <component name="EditorColorsManagerImpl">
-    <global_color_scheme name="Darcula" />
-  </component>
-</application>
\ No newline at end of file
diff --git a/editor.xml b/editor.xml
deleted file mode 100644
index 672c53ef..00000000
--- a/editor.xml
+++ /dev/null
@@ -1,5 +0,0 @@
-<application>
-  <component name="EditorSettings">
-    <option name="SHOW_QUICK_DOC_ON_MOUSE_OVER_ELEMENT" value="true" />
-  </component>
-</application>
\ No newline at end of file
diff --git a/find.xml b/find.xml
deleted file mode 100644
index 965789ef..00000000
--- a/find.xml
+++ /dev/null
@@ -1,7 +0,0 @@
-<application>
-  <component name="FindSettings">
-    <option name="customScope" value="All Places" />
-    <option name="defaultScopeName" value="All Places" />
-    <option name="SEARCH_SCOPE" value="All Places" />
-  </component>
-</application>
\ No newline at end of file
diff --git a/markdown.xml b/markdown.xml
deleted file mode 100644
index 92e74be4..00000000
--- a/markdown.xml
+++ /dev/null
@@ -1,5 +0,0 @@
-<application>
-  <component name="MarkdownApplicationSettings">
-    <MarkdownCssSettings />
-  </component>
-</application>
\ No newline at end of file
diff --git a/notifications.xml b/notifications.xml
deleted file mode 100644
index 4af5c843..00000000
--- a/notifications.xml
+++ /dev/null
@@ -1,7 +0,0 @@
-<application>
-  <component name="NotificationConfiguration">
-    <notification groupId="PyCharm Professional Advertiser" displayType="STICKY_BALLOON" />
-    <notification groupId="Python Compatibility Inspection Advertiser" displayType="STICKY_BALLOON" />
-    <notification groupId="Remote Desktop" />
-  </component>
-</application>
\ No newline at end of file
diff --git a/vcs.xml b/vcs.xml
deleted file mode 100644
index 9679914c..00000000
--- a/vcs.xml
+++ /dev/null
@@ -1,12 +0,0 @@
-<application>
-  <component name="GitRememberedInputs">
-    <option name="visitedUrls">
-      <list>
-        <UrlAndUserName>
-          <option name="url" value="http://github.com" />
-          <option name="userName" value="lfaino" />
-        </UrlAndUserName>
-      </list>
-    </option>
-  </component>
-</application>
\ No newline at end of file