diff --git a/.idea/LoReAn.iml b/.idea/LoReAn.iml
deleted file mode 100644
index 193a1360..00000000
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diff --git a/.idea/dictionaries/faino001.xml b/.idea/dictionaries/faino001.xml
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- `.__T__Math:base`
- `.__T__NCOL:base`
- `.__T__NROW:base`
- `.__T__NSBS:S4Vectors`
- `.__T__Ontology:BiocGenerics`
- `.__T__Ops:base`
- `.__T__PDict:Biostrings`
- `.__T__PWM:Biostrings`
- `.__T__PairwiseAlignments:Biostrings`
- `.__T__PairwiseAlignmentsSingleSubject:Biostrings`
- `.__T__Position:BiocGenerics`
- `.__T__ROWNAMES:S4Vectors`
- `.__T__Rattribnames:AnnotationDbi`
- `.__T__Rattribnames<-:AnnotationDbi`
- `.__T__Reduce:BiocGenerics`
- `.__T__Rkeyname:AnnotationDbi`
- `.__T__Rkeys:AnnotationDbi`
- `.__T__Rkeys<-:AnnotationDbi`
- `.__T__Rle:S4Vectors`
- `.__T__Rlength:AnnotationDbi`
- `.__T__SQLKeywords:DBI`
- `.__T__Schur:Matrix`
- `.__T__Secondary:AnnotationDbi`
- `.__T__SummarizedExperiment:SummarizedExperiment`
- `.__T__Summary:base`
- `.__T__Synonym:AnnotationDbi`
- `.__T__Term:AnnotationDbi`
- `.__T__Views:IRanges`
- `.__T__[:base`
- `.__T__[<-:base`
- `.__T__[[:base`
- `.__T__[[<-:base`
- `.__T__^:base`
- `.__T__abstract:Biobase`
- `.__T__acbind:DelayedArray`
- `.__T__acc:graph`
- `.__T__accessions:ProtGenerics`
- `.__T__active:S4Vectors`
- `.__T__active<-:S4Vectors`
- `.__T__addAttrToGeom:sp`
- `.__T__addAttributes:XML`
- `.__T__addEdge:graph`
- `.__T__addNextMethod:methods`
- `.__T__addNode:graph`
- `.__T__adj:graph`
- `.__T__adjacencyMatrix:graph`
- `.__T__aggenv:Biobase`
- `.__T__aggfun:Biobase`
- `.__T__aggregate:stats`
- `.__T__aligned:Biostrings`
- `.__T__all.equal:base`
- `.__T__all:base`
- `.__T__alphabet:Biostrings`
- `.__T__alphabetFrequency:Biostrings`
- `.__T__annotatedDataFrameFrom:Biobase`
- `.__T__annotation:BiocGenerics`
- `.__T__annotation<-:BiocGenerics`
- `.__T__any:base`
- `.__T__anyDuplicated:BiocGenerics`
- `.__T__anyNA:base`
- `.__T__append:BiocGenerics`
- `.__T__apply:DelayedArray`
- `.__T__arbind:DelayedArray`
- `.__T__as.array:base`
- `.__T__as.character:base`
- `.__T__as.complex:base`
- `.__T__as.data.frame:BiocGenerics`
- `.__T__as.env:S4Vectors`
- `.__T__as.factor:base`
- `.__T__as.integer:base`
- `.__T__as.list:base`
- `.__T__as.logical:base`
- `.__T__as.matrix:base`
- `.__T__as.numeric:base`
- `.__T__as.raw:base`
- `.__T__as.table:base`
- `.__T__as.vector:base`
- `.__T__assay:SummarizedExperiment`
- `.__T__assay<-:SummarizedExperiment`
- `.__T__assayData:Biobase`
- `.__T__assayData<-:Biobase`
- `.__T__assayNames:SummarizedExperiment`
- `.__T__assayNames<-:SummarizedExperiment`
- `.__T__assays:SummarizedExperiment`
- `.__T__assays<-:SummarizedExperiment`
- `.__T__attrDataItem:graph`
- `.__T__attrDataItem<-:graph`
- `.__T__attrDefaults:graph`
- `.__T__attrDefaults<-:graph`
- `.__T__band:Matrix`
- `.__T__bbox:sp`
- `.__T__body<-:base`
- `.__T__boxplot:graphics`
- `.__T__bsgenomeName:GenomeInfoDb`
- `.__T__by:base`
- `.__T__c:base`
- `.__T__cbind2:methods`
- `.__T__cbind:BiocGenerics`
- `.__T__channel:Biobase`
- `.__T__channelNames:Biobase`
- `.__T__channelNames<-:Biobase`
- `.__T__chartr:base`
- `.__T__checkConstraint:GenomicRanges`
- `.__T__chol2inv:base`
- `.__T__chol:base`
- `.__T__chromatogram:ProtGenerics`
- `.__T__chromatograms:ProtGenerics`
- `.__T__chunk_dim:DelayedArray`
- `.__T__classNameForDisplay:S4Vectors`
- `.__T__classVersion:Biobase`
- `.__T__classVersion<-:Biobase`
- `.__T__clearNode:graph`
- `.__T__clone:RCurl`
- `.__T__close:base`
- `.__T__clusterApply:BiocGenerics`
- `.__T__clusterApplyLB:BiocGenerics`
- `.__T__clusterCall:BiocGenerics`
- `.__T__clusterEvalQ:BiocGenerics`
- `.__T__clusterExport:BiocGenerics`
- `.__T__clusterMap:BiocGenerics`
- `.__T__clusterSplit:parallel`
- `.__T__clusteringCoefficient:graph`
- `.__T__codons:Biostrings`
- `.__T__coef:stats`
- `.__T__coerce:methods`
- `.__T__coerce<-:methods`
- `.__T__colData:SummarizedExperiment`
- `.__T__colData<-:SummarizedExperiment`
- `.__T__colMaxs:DelayedArray`
- `.__T__colMeans:BiocGenerics`
- `.__T__colMeans:base`
- `.__T__colMins:DelayedArray`
- `.__T__colRanges:DelayedArray`
- `.__T__colSums:BiocGenerics`
- `.__T__colSums:base`
- `.__T__collapse:IRanges`
- `.__T__colmask:Biostrings`
- `.__T__colmask<-:Biostrings`
- `.__T__colmetanames:AnnotationDbi`
- `.__T__colnames:BiocGenerics`
- `.__T__colnames<-:base`
- `.__T__columnMetadata:IRanges`
- `.__T__columnMetadata<-:IRanges`
- `.__T__columns:AnnotationDbi`
- `.__T__combine:BiocGenerics`
- `.__T__combineNodes:graph`
- `.__T__comment.SAX:XML`
- `.__T__commonName:GenomeInfoDb`
- `.__T__compact:XVector`
- `.__T__compareStrings:Biostrings`
- `.__T__complement:Biostrings`
- `.__T__complement:graph`
- `.__T__complete.cases:stats`
- `.__T__complete:RCurl`
- `.__T__computeAllFlinks:Biostrings`
- `.__T__condition:AnnotationFilter`
- `.__T__conditions:BiocGenerics`
- `.__T__conditions<-:BiocGenerics`
- `.__T__confint:stats`
- `.__T__connComp:graph`
- `.__T__consensusMatrix:Biostrings`
- `.__T__consensusString:Biostrings`
- `.__T__consensusViews:Biostrings`
- `.__T__content:Biobase`
- `.__T__contents:Biobase`
- `.__T__convertFilter:AnnotationFilter`
- `.__T__coordinates:sp`
- `.__T__coordinates<-:sp`
- `.__T__coordnames:sp`
- `.__T__coordnames<-:sp`
- `.__T__coords:colorspace`
- `.__T__cor:stats`
- `.__T__count.links:AnnotationDbi`
- `.__T__count.mappedLkeys:AnnotationDbi`
- `.__T__count.mappedRkeys:AnnotationDbi`
- `.__T__count.mappedkeys:AnnotationDbi`
- `.__T__countLnodeHits:S4Vectors`
- `.__T__countMatches:S4Vectors`
- `.__T__countOverlaps:IRanges`
- `.__T__countPDict:Biostrings`
- `.__T__countPWM:Biostrings`
- `.__T__countPattern:Biostrings`
- `.__T__countRnodeHits:S4Vectors`
- `.__T__counts:BiocGenerics`
- `.__T__counts<-:BiocGenerics`
- `.__T__cov2cor:stats`
- `.__T__cov:stats`
- `.__T__coverage:IRanges`
- `.__T__crossprod:base`
- `.__T__cummax:base`
- `.__T__cummin:base`
- `.__T__cumprod:base`
- `.__T__cumsum:base`
- `.__T__database:ProtGenerics`
- `.__T__dbBegin:DBI`
- `.__T__dbBeginTransaction:RSQLite`
- `.__T__dbBind:DBI`
- `.__T__dbCallProc:DBI`
- `.__T__dbClearResult:DBI`
- `.__T__dbColumnInfo:DBI`
- `.__T__dbCommit:DBI`
- `.__T__dbConnect:DBI`
- `.__T__dbDataType:DBI`
- `.__T__dbDisconnect:DBI`
- `.__T__dbDriver:DBI`
- `.__T__dbExecute:DBI`
- `.__T__dbExistsTable:DBI`
- `.__T__dbFetch:DBI`
- `.__T__dbGetException:DBI`
- `.__T__dbGetInfo:DBI`
- `.__T__dbGetPreparedQuery:RSQLite`
- `.__T__dbGetQuery:DBI`
- `.__T__dbGetRowCount:DBI`
- `.__T__dbGetRowsAffected:DBI`
- `.__T__dbGetStatement:DBI`
- `.__T__dbHasCompleted:DBI`
- `.__T__dbInfo:AnnotationDbi`
- `.__T__dbIsValid:DBI`
- `.__T__dbListConnections:DBI`
- `.__T__dbListFields:DBI`
- `.__T__dbListResults:DBI`
- `.__T__dbListTables:DBI`
- `.__T__dbQuoteIdentifier:DBI`
- `.__T__dbQuoteString:DBI`
- `.__T__dbReadTable:DBI`
- `.__T__dbRemoveTable:DBI`
- `.__T__dbRollback:DBI`
- `.__T__dbSendPreparedQuery:RSQLite`
- `.__T__dbSendQuery:DBI`
- `.__T__dbSendStatement:DBI`
- `.__T__dbSetDataMappings:DBI`
- `.__T__dbUnloadDriver:DBI`
- `.__T__dbWithTransaction:DBI`
- `.__T__dbWriteTable:DBI`
- `.__T__dbconn:BiocGenerics`
- `.__T__dbfile:BiocGenerics`
- `.__T__dbinom:stats`
- `.__T__dbmeta:AnnotationDbi`
- `.__T__dbschema:AnnotationDbi`
- `.__T__decode:S4Vectors`
- `.__T__degree:graph`
- `.__T__deletion:Biostrings`
- `.__T__density:stats`
- `.__T__desc:IRanges`
- `.__T__desc<-:IRanges`
- `.__T__description:Biobase`
- `.__T__description<-:Biobase`
- `.__T__design:BiocGenerics`
- `.__T__design<-:BiocGenerics`
- `.__T__detail:Biostrings`
- `.__T__determinant:base`
- `.__T__diag:base`
- `.__T__diag<-:base`
- `.__T__diff:base`
- `.__T__dim:base`
- `.__T__dim<-:base`
- `.__T__dimLabels:Biobase`
- `.__T__dimLabels<-:Biobase`
- `.__T__dimensions:sp`
- `.__T__dimnames:base`
- `.__T__dimnames<-:base`
- `.__T__dims:Biobase`
- `.__T__dinucleotideFrequencyTest:Biostrings`
- `.__T__direction:AnnotationDbi`
- `.__T__direction<-:AnnotationDbi`
- `.__T__disaggregate:sp`
- `.__T__disjoin:IRanges`
- `.__T__disjointBins:IRanges`
- `.__T__dispTable:BiocGenerics`
- `.__T__dispTable<-:BiocGenerics`
- `.__T__distance:IRanges`
- `.__T__distanceToNearest:IRanges`
- `.__T__distributeNegation:AnnotationFilter`
- `.__T__dlogis:stats`
- `.__T__do.call:BiocGenerics`
- `.__T__docName:XML`
- `.__T__docName<-:XML`
- `.__T__dpois:stats`
- `.__T__drop:base`
- `.__T__droplevels:base`
- `.__T__dumpGXL:graph`
- `.__T__duplicated:BiocGenerics`
- `.__T__eapply:base`
- `.__T__edgeData:graph`
- `.__T__edgeData<-:graph`
- `.__T__edgeDataDefaults:graph`
- `.__T__edgeDataDefaults<-:graph`
- `.__T__edgeL:graph`
- `.__T__edgeMatrix:graph`
- `.__T__edgeNames:graph`
- `.__T__edgeSets:graph`
- `.__T__edgeWeights:graph`
- `.__T__edgemode:graph`
- `.__T__edgemode<-:graph`
- `.__T__edges:graph`
- `.__T__elementMetadata:S4Vectors`
- `.__T__elementMetadata<-:S4Vectors`
- `.__T__elementNROWS:S4Vectors`
- `.__T__elementType:S4Vectors`
- `.__T__encoding:Biostrings`
- `.__T__end:stats`
- `.__T__end<-:BiocGenerics`
- `.__T__endElement.SAX:XML`
- `.__T__endIndex:Biostrings`
- `.__T__endoapply:S4Vectors`
- `.__T__entityDeclaration.SAX:XML`
- `.__T__esApply:Biobase`
- `.__T__estimateDispersions:BiocGenerics`
- `.__T__estimateSizeFactors:BiocGenerics`
- `.__T__eval:BiocGenerics`
- `.__T__evalSeparately:S4Vectors`
- `.__T__exists:base`
- `.__T__expand.grid:S4Vectors`
- `.__T__expand:Matrix`
- `.__T__expand:S4Vectors`
- `.__T__experimentData:Biobase`
- `.__T__experimentData<-:Biobase`
- `.__T__expinfo:Biobase`
- `.__T__expm:Matrix`
- `.__T__exprs:Biobase`
- `.__T__exprs<-:Biobase`
- `.__T__extractAt:Biostrings`
- `.__T__extractFromTo:graph`
- `.__T__extractList:IRanges`
- `.__T__extractROWS:S4Vectors`
- `.__T__fData:Biobase`
- `.__T__fData<-:Biobase`
- `.__T__facmul:Matrix`
- `.__T__featureData:Biobase`
- `.__T__featureData<-:Biobase`
- `.__T__featureNames:Biobase`
- `.__T__featureNames<-:Biobase`
- `.__T__fetch:DBI`
- `.__T__field:AnnotationFilter`
- `.__T__fileName:BiocGenerics`
- `.__T__filterRules:S4Vectors`
- `.__T__findMatches:S4Vectors`
- `.__T__findOverlaps:IRanges`
- `.__T__findPalindromes:Biostrings`
- `.__T__findRange:IRanges`
- `.__T__findRun:S4Vectors`
- `.__T__first:S4Vectors`
- `.__T__first<-:S4Vectors`
- `.__T__flank:IRanges`
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- `.__T__forceSymmetric:Matrix`
- `.__T__formals<-:base`
- `.__T__format:base`
- `.__T__free:XML`
- `.__T__from:S4Vectors`
- `.__T__fromGXL:graph`
- `.__T__fullgrid:sp`
- `.__T__fullgrid<-:sp`
- `.__T__fvarLabels:Biobase`
- `.__T__fvarLabels<-:Biobase`
- `.__T__fvarMetadata:Biobase`
- `.__T__fvarMetadata<-:Biobase`
- `.__T__gaps:IRanges`
- `.__T__genome:GenomeInfoDb`
- `.__T__genome<-:GenomeInfoDb`
- `.__T__geometry:sp`
- `.__T__geometry<-:sp`
- `.__T__get:BiocGenerics`
- `.__T__getBimapFilters:AnnotationDbi`
- `.__T__getEncoding:XML`
- `.__T__getGOFrameData:AnnotationDbi`
- `.__T__getKEGGFrameData:AnnotationDbi`
- `.__T__getListElement:S4Vectors`
- `.__T__getSeq:Biostrings`
- `.__T__granges:GenomicRanges`
- `.__T__graphIntersect:graph`
- `.__T__graphUnion:graph`
- `.__T__grep:BiocGenerics`
- `.__T__grepl:BiocGenerics`
- `.__T__grglist:GenomicRanges`
- `.__T__gridded:sp`
- `.__T__gridded<-:sp`
- `.__T__grouplengths:IRanges`
- `.__T__grouprank:IRanges`
- `.__T__gsub:base`
- `.__T__hasAllFlinks:Biostrings`
- `.__T__hasMultiProbes:AnnotationDbi`
- `.__T__hasOnlyBaseLetters:Biostrings`
- `.__T__hasSingleProbes:AnnotationDbi`
- `.__T__head:utils`
- `.__T__high2low:IRanges`
- `.__T__hybridizations:Biobase`
- `.__T__ifelse2:IRanges`
- `.__T__image:graphics`
- `.__T__inEdges:graph`
- `.__T__indel:Biostrings`
- `.__T__initfun:Biobase`
- `.__T__initialize:methods`
- `.__T__injectHardMask:Biostrings`
- `.__T__insertion:Biostrings`
- `.__T__intensity:ProtGenerics`
- `.__T__intersect:BiocGenerics`
- `.__T__intersection2:graph`
- `.__T__intersection:graph`
- `.__T__invertStrand:BiocGenerics`
- `.__T__ions:ProtGenerics`
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- `.__T__is.infinite:base`
- `.__T__is.na:base`
- `.__T__is.nan:base`
- `.__T__is.projected:sp`
- `.__T__is.unsorted:BiocGenerics`
- `.__T__isAdjacent:graph`
- `.__T__isCentroided:ProtGenerics`
- `.__T__isCircular:GenomeInfoDb`
- `.__T__isCircular<-:GenomeInfoDb`
- `.__T__isConnected:graph`
- `.__T__isConstant:S4Vectors`
- `.__T__isCurrent:Biobase`
- `.__T__isDiagonal:Matrix`
- `.__T__isDirected:graph`
- `.__T__isDisjoint:IRanges`
- `.__T__isEmpty:S4Vectors`
- `.__T__isLinear:DelayedArray`
- `.__T__isMatchingEndingAt:Biostrings`
- `.__T__isMatchingStartingAt:Biostrings`
- `.__T__isNA:AnnotationDbi`
- `.__T__isNormal:IRanges`
- `.__T__isSQLKeyword:DBI`
- `.__T__isSorted:S4Vectors`
- `.__T__isStrictlySorted:S4Vectors`
- `.__T__isSymmetric:base`
- `.__T__isTriangular:Matrix`
- `.__T__isVersioned:Biobase`
- `.__T__join:graph`
- `.__T__keyname:AnnotationDbi`
- `.__T__keys:AnnotationDbi`
- `.__T__keys<-:AnnotationDbi`
- `.__T__keytypes:AnnotationDbi`
- `.__T__kronecker:base`
- `.__T__lapply:BiocGenerics`
- `.__T__lcprefix:Biostrings`
- `.__T__lcsubstr:Biostrings`
- `.__T__lcsuffix:Biostrings`
- `.__T__leaves:graph`
- `.__T__length:base`
- `.__T__length<-:base`
- `.__T__lengths:BiocGenerics`
- `.__T__letter:Biostrings`
- `.__T__letterFrequency:Biostrings`
- `.__T__letterFrequencyInSlidingView:Biostrings`
- `.__T__levels:base`
- `.__T__levels<-:base`
- `.__T__links:AnnotationDbi`
- `.__T__loadMethod:methods`
- `.__T__locked:Biobase`
- `.__T__logLik:stats`
- `.__T__logicOp:AnnotationFilter`
- `.__T__low2high:IRanges`
- `.__T__ls:base`
- `.__T__lu:Matrix`
- `.__T__mad:BiocGenerics`
- `.__T__make.db.names:DBI`
- `.__T__makeDataPackage:Biobase`
- `.__T__mapIds:AnnotationDbi`
- `.__T__mapOrder:IRanges`
- `.__T__mappedLkeys:AnnotationDbi`
- `.__T__mappedRkeys:AnnotationDbi`
- `.__T__mappedkeys:AnnotationDbi`
- `.__T__mapply:BiocGenerics`
- `.__T__maskGaps:Biostrings`
- `.__T__maskMotif:Biostrings`
- `.__T__maskeddim:Biostrings`
- `.__T__maskedncol:Biostrings`
- `.__T__maskednrow:Biostrings`
- `.__T__maskedratio:IRanges`
- `.__T__maskedwidth:IRanges`
- `.__T__masks:Biostrings`
- `.__T__masks<-:Biostrings`
- `.__T__mass:ProtGenerics`
- `.__T__match:BiocGenerics`
- `.__T__matchLRPatterns:Biostrings`
- `.__T__matchPDict:Biostrings`
- `.__T__matchPWM:Biostrings`
- `.__T__matchPattern:Biostrings`
- `.__T__matchProbePair:Biostrings`
- `.__T__matrixClass:DelayedArray`
- `.__T__max:base`
- `.__T__maxScore:Biostrings`
- `.__T__maxWeights:Biostrings`
- `.__T__mcols:S4Vectors`
- `.__T__mcols<-:S4Vectors`
- `.__T__mean:base`
- `.__T__median:stats`
- `.__T__members:IRanges`
- `.__T__mendoapply:S4Vectors`
- `.__T__merge:base`
- `.__T__metadata:S4Vectors`
- `.__T__metadata<-:S4Vectors`
- `.__T__mgEdgeData:graph`
- `.__T__mgEdgeData<-:graph`
- `.__T__mgEdgeDataDefaults:graph`
- `.__T__mgEdgeDataDefaults<-:graph`
- `.__T__mget:BiocGenerics`
- `.__T__mid:IRanges`
- `.__T__min:base`
- `.__T__minScore:Biostrings`
- `.__T__minWeights:Biostrings`
- `.__T__mismatch:Biostrings`
- `.__T__mismatchSummary:Biostrings`
- `.__T__mismatchTable:Biostrings`
- `.__T__modifications:ProtGenerics`
- `.__T__mstack:IRanges`
- `.__T__mz:ProtGenerics`
- `.__T__mz<-:ProtGenerics`
- `.__T__nLnode:S4Vectors`
- `.__T__nRnode:S4Vectors`
- `.__T__na.exclude:stats`
- `.__T__na.omit:stats`
- `.__T__names:base`
- `.__T__names<-:base`
- `.__T__narrow:IRanges`
- `.__T__nchar:base`
- `.__T__ncol:base`
- `.__T__nearest:IRanges`
- `.__T__nedit:Biostrings`
- `.__T__neditEndingAt:Biostrings`
- `.__T__neditStartingAt:Biostrings`
- `.__T__needwunsQS:Biostrings`
- `.__T__nhit:AnnotationDbi`
- `.__T__nindel:Biostrings`
- `.__T__nir_list:IRanges`
- `.__T__nmatch:Biostrings`
- `.__T__nmismatch:Biostrings`
- `.__T__nnode:S4Vectors`
- `.__T__nnodes:Biostrings`
- `.__T__nnzero:Matrix`
- `.__T__nobj:IRanges`
- `.__T__nobs:stats`
- `.__T__nodeData:graph`
- `.__T__nodeData<-:graph`
- `.__T__nodeDataDefaults:graph`
- `.__T__nodeDataDefaults<-:graph`
- `.__T__nodes:graph`
- `.__T__nodes<-:graph`
- `.__T__norm:base`
- `.__T__normControls:Biobase`
- `.__T__normalize:BiocGenerics`
- `.__T__normalizeSingleBracketReplacementValue:S4Vectors`
- `.__T__not:AnnotationFilter`
- `.__T__notes:Biobase`
- `.__T__notes<-:Biobase`
- `.__T__nrow:base`
- `.__T__nrun:S4Vectors`
- `.__T__nucleotideFrequencyAt:Biostrings`
- `.__T__numEdges:graph`
- `.__T__numNodes:graph`
- `.__T__oligonucleotideFrequency:Biostrings`
- `.__T__order:BiocGenerics`
- `.__T__orgPackageName:AnnotationDbi`
- `.__T__organism:BiocGenerics`
- `.__T__organism<-:BiocGenerics`
- `.__T__otherInfo:Biobase`
- `.__T__over:sp`
- `.__T__overlapsAny:IRanges`
- `.__T__overlapsRanges:IRanges`
- `.__T__pData:Biobase`
- `.__T__pData<-:Biobase`
- `.__T__pack:Matrix`
- `.__T__pairwiseAlignment:Biostrings`
- `.__T__palindromeArmLength:Biostrings`
- `.__T__palindromeLeftArm:Biostrings`
- `.__T__palindromeRightArm:Biostrings`
- `.__T__parApply:BiocGenerics`
- `.__T__parCapply:BiocGenerics`
- `.__T__parLapply:BiocGenerics`
- `.__T__parLapplyLB:BiocGenerics`
- `.__T__parRapply:BiocGenerics`
- `.__T__parSapply:BiocGenerics`
- `.__T__parSapplyLB:BiocGenerics`
- `.__T__parallelSlotNames:S4Vectors`
- `.__T__parallelVectorNames:S4Vectors`
- `.__T__params:S4Vectors`
- `.__T__paste:BiocGenerics`
- `.__T__pattern:Biostrings`
- `.__T__patternFrequency:Biostrings`
- `.__T__pbinom:stats`
- `.__T__pcompare:S4Vectors`
- `.__T__pcompareRecursively:S4Vectors`
- `.__T__peaks:ProtGenerics`
- `.__T__peptides:ProtGenerics`
- `.__T__pgap:IRanges`
- `.__T__phenoData:Biobase`
- `.__T__phenoData<-:Biobase`
- `.__T__pid:Biostrings`
- `.__T__pintersect:IRanges`
- `.__T__plogis:stats`
- `.__T__plot:graphics`
- `.__T__plotDispEsts:BiocGenerics`
- `.__T__plotMA:BiocGenerics`
- `.__T__plotPCA:BiocGenerics`
- `.__T__pmatchPattern:Biostrings`
- `.__T__pmax.int:BiocGenerics`
- `.__T__pmax2:DelayedArray`
- `.__T__pmax:BiocGenerics`
- `.__T__pmin.int:BiocGenerics`
- `.__T__pmin2:DelayedArray`
- `.__T__pmin:BiocGenerics`
- `.__T__polygons:sp`
- `.__T__polygons<-:sp`
- `.__T__pop:RCurl`
- `.__T__pos:IRanges`
- `.__T__poverlaps:IRanges`
- `.__T__ppois:stats`
- `.__T__precede:IRanges`
- `.__T__preproc:Biobase`
- `.__T__preproc<-:Biobase`
- `.__T__print:base`
- `.__T__processingInstruction.SAX:XML`
- `.__T__prod:base`
- `.__T__profile:stats`
- `.__T__proj4string:sp`
- `.__T__proj4string<-:sp`
- `.__T__promoters:IRanges`
- `.__T__prompt:utils`
- `.__T__proteins:ProtGenerics`
- `.__T__protocolData:Biobase`
- `.__T__protocolData<-:Biobase`
- `.__T__provider:GenomeInfoDb`
- `.__T__providerVersion:GenomeInfoDb`
- `.__T__psetdiff:IRanges`
- `.__T__psms:ProtGenerics`
- `.__T__pubMedIds:Biobase`
- `.__T__pubMedIds<-:Biobase`
- `.__T__punion:IRanges`
- `.__T__push:RCurl`
- `.__T__qbinom:stats`
- `.__T__qlogis:stats`
- `.__T__qpois:stats`
- `.__T__qr.Q:base`
- `.__T__qr.R:base`
- `.__T__qr.coef:base`
- `.__T__qr.fitted:base`
- `.__T__qr.qty:base`
- `.__T__qr.qy:base`
- `.__T__qr.resid:base`
- `.__T__qr:base`
- `.__T__quality:Biostrings`
- `.__T__quantile:stats`
- `.__T__range:base`
- `.__T__ranges:IRanges`
- `.__T__ranges<-:IRanges`
- `.__T__rank:BiocGenerics`
- `.__T__rbind2:methods`
- `.__T__rbind:BiocGenerics`
- `.__T__rcond:base`
- `.__T__rdaPath:XVector`
- `.__T__readHTMLList:XML`
- `.__T__readHTMLTable:XML`
- `.__T__readKeyValueDB:XML`
- `.__T__readSolrDoc:XML`
- `.__T__realize:DelayedArray`
- `.__T__recenter:sp`
- `.__T__reduce:IRanges`
- `.__T__refdim:DelayedArray`
- `.__T__reflect:IRanges`
- `.__T__releaseDate:GenomeInfoDb`
- `.__T__releaseName:GenomeInfoDb`
- `.__T__relist:utils`
- `.__T__relistToClass:S4Vectors`
- `.__T__removeAttrDataItem<-:graph`
- `.__T__removeAttributes:XML`
- `.__T__removeEdge:graph`
- `.__T__removeEdgesByWeight:graph`
- `.__T__removeNode:graph`
- `.__T__removeXMLNamespaces:XML`
- `.__T__rename:S4Vectors`
- `.__T__rep.int:base`
- `.__T__rep:base`
- `.__T__replaceAt:Biostrings`
- `.__T__replaceLetterAt:Biostrings`
- `.__T__replaceROWS:S4Vectors`
- `.__T__reset:RCurl`
- `.__T__residuals:stats`
- `.__T__resize:IRanges`
- `.__T__restrict:IRanges`
- `.__T__rev:base`
- `.__T__revElements:S4Vectors`
- `.__T__reverse:IRanges`
- `.__T__reverseComplement:Biostrings`
- `.__T__revmap:AnnotationDbi`
- `.__T__rglist:IRanges`
- `.__T__round:base`
- `.__T__rowData:SummarizedExperiment`
- `.__T__rowData<-:SummarizedExperiment`
- `.__T__rowMaxs:DelayedArray`
- `.__T__rowMeans:BiocGenerics`
- `.__T__rowMeans:base`
- `.__T__rowMedians:Biobase`
- `.__T__rowMins:DelayedArray`
- `.__T__rowQ:Biobase`
- `.__T__rowRanges:DelayedArray`
- `.__T__rowRanges<-:SummarizedExperiment`
- `.__T__rowSums:BiocGenerics`
- `.__T__rowSums:base`
- `.__T__rowmask:Biostrings`
- `.__T__rowmask<-:Biostrings`
- `.__T__rownames:BiocGenerics`
- `.__T__rownames<-:base`
- `.__T__rtime:ProtGenerics`
- `.__T__runLength:S4Vectors`
- `.__T__runLength<-:S4Vectors`
- `.__T__runValue:S4Vectors`
- `.__T__runValue<-:S4Vectors`
- `.__T__runmean:S4Vectors`
- `.__T__runmed:stats`
- `.__T__runq:S4Vectors`
- `.__T__runsum:S4Vectors`
- `.__T__runwtsum:S4Vectors`
- `.__T__sample:base`
- `.__T__sampleNames:Biobase`
- `.__T__sampleNames<-:Biobase`
- `.__T__samples:Biobase`
- `.__T__sapply:BiocGenerics`
- `.__T__saveDb:AnnotationDbi`
- `.__T__saveXML:XML`
- `.__T__scans:ProtGenerics`
- `.__T__score:BiocGenerics`
- `.__T__score<-:BiocGenerics`
- `.__T__sd:BiocGenerics`
- `.__T__se.exprs:Biobase`
- `.__T__se.exprs<-:Biobase`
- `.__T__second:S4Vectors`
- `.__T__second<-:S4Vectors`
- `.__T__seed:DelayedArray`
- `.__T__select:AnnotationDbi`
- `.__T__selectChannels:Biobase`
- `.__T__selfmatch:S4Vectors`
- `.__T__seqinfo:GenomeInfoDb`
- `.__T__seqinfo<-:GenomeInfoDb`
- `.__T__seqlengths:GenomeInfoDb`
- `.__T__seqlengths<-:GenomeInfoDb`
- `.__T__seqlevels0:GenomeInfoDb`
- `.__T__seqlevels:GenomeInfoDb`
- `.__T__seqlevels<-:GenomeInfoDb`
- `.__T__seqlevelsInUse:GenomeInfoDb`
- `.__T__seqlevelsStyle:GenomeInfoDb`
- `.__T__seqlevelsStyle<-:GenomeInfoDb`
- `.__T__seqnames:GenomeInfoDb`
- `.__T__seqnames<-:GenomeInfoDb`
- `.__T__seqtype:Biostrings`
- `.__T__seqtype<-:Biostrings`
- `.__T__setInpBimapFilter:AnnotationDbi`
- `.__T__setListElement:S4Vectors`
- `.__T__setdiff:BiocGenerics`
- `.__T__setequal:base`
- `.__T__shift:IRanges`
- `.__T__shiftApply:S4Vectors`
- `.__T__show:methods`
- `.__T__showAsCell:S4Vectors`
- `.__T__signif:base`
- `.__T__sizeFactors:BiocGenerics`
- `.__T__sizeFactors<-:BiocGenerics`
- `.__T__skewpart:Matrix`
- `.__T__slice:IRanges`
- `.__T__slidingWindows:IRanges`
- `.__T__slotsFromS3:methods`
- `.__T__smoothEnds:stats`
- `.__T__snpCall:Biobase`
- `.__T__snpCall<-:Biobase`
- `.__T__snpCallProbability:Biobase`
- `.__T__snpCallProbability<-:Biobase`
- `.__T__solve:base`
- `.__T__sort:BiocGenerics`
- `.__T__sortSeqlevels:GenomeInfoDb`
- `.__T__source:base`
- `.__T__spChFIDs:sp`
- `.__T__spChFIDs<-:sp`
- `.__T__spTransform:sp`
- `.__T__space:S4Vectors`
- `.__T__species:BiocGenerics`
- `.__T__species<-:BiocGenerics`
- `.__T__spectra:ProtGenerics`
- `.__T__split:base`
- `.__T__split<-:base`
- `.__T__splitAsList:IRanges`
- `.__T__splitRanges:IRanges`
- `.__T__sppanel:sp`
- `.__T__spplot:sp`
- `.__T__spsample:sp`
- `.__T__sqlAppendTable:DBI`
- `.__T__sqlCreateTable:DBI`
- `.__T__sqlData:DBI`
- `.__T__sqlInterpolate:DBI`
- `.__T__sqlParseVariables:DBI`
- `.__T__stack:utils`
- `.__T__start:stats`
- `.__T__start<-:BiocGenerics`
- `.__T__startElement.SAX:XML`
- `.__T__startIndex:Biostrings`
- `.__T__storageMode:Biobase`
- `.__T__storageMode<-:Biobase`
- `.__T__strand:BiocGenerics`
- `.__T__strand<-:BiocGenerics`
- `.__T__stringDist:Biostrings`
- `.__T__strsplit:Biostrings`
- `.__T__sub:base`
- `.__T__subGraph:graph`
- `.__T__subject:IRanges`
- `.__T__subpatterns:Biostrings`
- `.__T__subseq:XVector`
- `.__T__subseq<-:XVector`
- `.__T__subset:base`
- `.__T__subsetByFilter:S4Vectors`
- `.__T__subsetByOverlaps:IRanges`
- `.__T__subset_seed_as_array:DelayedArray`
- `.__T__substr:base`
- `.__T__substring:base`
- `.__T__subviews:IRanges`
- `.__T__sum:base`
- `.__T__summary:base`
- `.__T__supportedFilters:AnnotationFilter`
- `.__T__surfaceArea:sp`
- `.__T__symmpart:Matrix`
- `.__T__t:base`
- `.__T__table:BiocGenerics`
- `.__T__tagname:AnnotationDbi`
- `.__T__tail:utils`
- `.__T__tapply:BiocGenerics`
- `.__T__taxonomyId:AnnotationDbi`
- `.__T__tb.width:Biostrings`
- `.__T__tb:Biostrings`
- `.__T__tcrossprod:base`
- `.__T__text.SAX:XML`
- `.__T__threebands:IRanges`
- `.__T__threshold:graph`
- `.__T__tic:ProtGenerics`
- `.__T__tile:IRanges`
- `.__T__to:S4Vectors`
- `.__T__toComplex:Biostrings`
- `.__T__toDotR:graph`
- `.__T__toGXL:graph`
- `.__T__toHTML:XML`
- `.__T__toString:base`
- `.__T__toTable:AnnotationDbi`
- `.__T__toeplitz:stats`
- `.__T__toggleProbes:AnnotationDbi`
- `.__T__togroup:IRanges`
- `.__T__togrouplength:IRanges`
- `.__T__togrouprank:IRanges`
- `.__T__tolower:base`
- `.__T__toupper:base`
- `.__T__transform:base`
- `.__T__translate:Biostrings`
- `.__T__tril:Matrix`
- `.__T__trim:IRanges`
- `.__T__trimLRPatterns:Biostrings`
- `.__T__triu:Matrix`
- `.__T__twoWayAlphabetFrequency:Biostrings`
- `.__T__type:Biostrings`
- `.__T__type:DelayedArray`
- `.__T__ugraph:graph`
- `.__T__unaligned:Biostrings`
- `.__T__union:BiocGenerics`
- `.__T__unique:BiocGenerics`
- `.__T__uniqueLetters:Biostrings`
- `.__T__universe:IRanges`
- `.__T__universe<-:IRanges`
- `.__T__unlist:base`
- `.__T__unmasked:Biostrings`
- `.__T__unname:base`
- `.__T__unpack:Matrix`
- `.__T__unsplit:BiocGenerics`
- `.__T__unstrsplit:S4Vectors`
- `.__T__update:stats`
- `.__T__updateGraph:graph`
- `.__T__updateObject:BiocGenerics`
- `.__T__updateObjectTo:Biobase`
- `.__T__updown:Matrix`
- `.__T__validateGXL:graph`
- `.__T__value:AnnotationFilter`
- `.__T__values:S4Vectors`
- `.__T__values<-:S4Vectors`
- `.__T__var:BiocGenerics`
- `.__T__varLabels:Biobase`
- `.__T__varLabels<-:Biobase`
- `.__T__varMetadata:Biobase`
- `.__T__varMetadata<-:Biobase`
- `.__T__vcountPDict:Biostrings`
- `.__T__vcountPattern:Biostrings`
- `.__T__vcov:stats`
- `.__T__viewApply:IRanges`
- `.__T__viewMaxs:IRanges`
- `.__T__viewMeans:IRanges`
- `.__T__viewMins:IRanges`
- `.__T__viewRangeMaxs:IRanges`
- `.__T__viewRangeMins:IRanges`
- `.__T__viewSums:IRanges`
- `.__T__viewWhichMaxs:IRanges`
- `.__T__viewWhichMins:IRanges`
- `.__T__vmatchPDict:Biostrings`
- `.__T__vmatchPattern:Biostrings`
- `.__T__vmembers:IRanges`
- `.__T__vwhichPDict:Biostrings`
- `.__T__weights:stats`
- `.__T__which.isMatchingEndingAt:Biostrings`
- `.__T__which.isMatchingStartingAt:Biostrings`
- `.__T__which.max:BiocGenerics`
- `.__T__which.min:BiocGenerics`
- `.__T__which:BiocGenerics`
- `.__T__which:base`
- `.__T__whichFirstNotNormal:IRanges`
- `.__T__whichPDict:Biostrings`
- `.__T__width0:Biostrings`
- `.__T__width:BiocGenerics`
- `.__T__width<-:BiocGenerics`
- `.__T__window:stats`
- `.__T__window<-:stats`
- `.__T__with:base`
- `.__T__within:base`
- `.__T__write.exprs:Biobase`
- `.__T__writeMM:Matrix`
- `.__T__writeMSData:ProtGenerics`
- `.__T__write_block_to_sink:DelayedArray`
- `.__T__xmlAttrs<-:XML`
- `.__T__xmlChildren<-:XML`
- `.__T__xmlClone:XML`
- `.__T__xmlNamespace<-:XML`
- `.__T__xmlNamespaces<-:XML`
- `.__T__xmlParent:XML`
- `.__T__xmlSource:XML`
- `.__T__xmlSourceFunctions:XML`
- `.__T__xmlSourceSection:XML`
- `.__T__xmlToDataFrame:XML`
- `.__T__xmlToS4:XML`
- `.__T__xmlValue<-:XML`
- `.__T__xtabs:BiocGenerics`
- `.__T__xtfrm:base`
- `.__T__xvcopy:XVector`
- `.__T__zapsmall:base`
- `.__T__zipdown:S4Vectors`
- `.__T__zipup:S4Vectors`
- `.__T__|:base`
- `/.difftime`
- `/`
- `:::`
- `::`
- `:=`
- `:`
- `<-`
- `<<-`
- `<=`
- `<`
- `==.bit`
- `==.bitwhich`
- `==`
- `=`
- `>=`
- `>`
- `?`
- `@<-`
- `@`
- `Encoding<-`
- `Lkeys<-`
- `Names<-`
- `Rattribnames<-`
- `Rkeys<-`
- `S3Class<-`
- `S3Part<-`
- `[.AsIs`
- `[.Date`
- `[.Dlist`
- `[.POSIXct`
- `[.POSIXlt`
- `[.bit`
- `[.cluster`
- `[.data.frame`
- `[.difftime`
- `[.factor`
- `[.hexmode`
- `[.listof`
- `[.noquote`
- `[.numeric_version`
- `[.octmode`
- `[.simple.list`
- `[.table`
- `[.tile.list`
- `[.triang.list`
- `[.warnings`
- `[<-.Date`
- `[<-.POSIXct`
- `[<-.POSIXlt`
- `[<-.bit`
- `[<-.data.frame`
- `[<-.factor`
- `[<-.numeric_version`
- `[<-`
- `[[.Date`
- `[[.POSIXct`
- `[[.bit`
- `[[.data.frame`
- `[[.factor`
- `[[.numeric_version`
- `[[<-.bit`
- `[[<-.data.frame`
- `[[<-.factor`
- `[[<-.numeric_version`
- `[[<-`
- `[[`
- `[`
- `^`
- `active<-`
- `align<-`
- `annotation<-`
- `as<-`
- `assay<-`
- `assayData<-`
- `assayDataElement<-`
- `assayNames<-`
- `assays<-`
- `attr<-`
- `attrDataItem<-`
- `attrDefaults<-`
- `attributes<-`
- `body<-`
- `caption<-`
- `channelNames<-`
- `class<-`
- `classVersion<-`
- `coef<-`
- `coefficients<-`
- `coerce<-`
- `colData<-`
- `colmask<-`
- `colnames<-`
- `columnMetadata<-`
- `comment<-`
- `conditions<-`
- `contrasts<-`
- `coordinates<-`
- `coordnames<-`
- `counts<-`
- `covariate<-`
- `desc<-`
- `description<-`
- `design<-`
- `diag<-`
- `digits<-`
- `dim<-`
- `dimLabels<-`
- `dimnames<-.data.frame`
- `dimnames<-`
- `direction<-`
- `dispTable<-`
- `display<-`
- `docName<-`
- `edgeData<-`
- `edgeDataDefaults<-`
- `edgeRenderInfo<-`
- `edgemode<-`
- `el<-`
- `elNamed<-`
- `elementMetadata<-`
- `end<-`
- `environment<-`
- `experimentData<-`
- `exprs<-`
- `fData<-`
- `f_env<-`
- `f_lhs<-`
- `f_rhs<-`
- `featureData<-`
- `featureNames<-`
- `first<-`
- `fn_body<-`
- `fn_env<-`
- `fn_fmls<-`
- `fn_fmls_names<-`
- `formals<-`
- `fullgrid<-`
- `functionBody<-`
- `fvarLabels<-`
- `fvarMetadata<-`
- `genome<-`
- `geometry<-`
- `graphRenderInfo<-`
- `gridded<-`
- `htmlDependencies<-`
- `is.na<-.default`
- `is.na<-.factor`
- `is.na<-.numeric_version`
- `is.na<-`
- `is.sorted<-`
- `isCircular<-`
- `key<-`
- `keys<-`
- `label<-`
- `languageEl<-`
- `last<-`
- `length<-.bit`
- `length<-.bitwhich`
- `length<-.factor`
- `length<-`
- `levels<-.factor`
- `levels<-`
- `lowerTriangle<-`
- `mapLevels<-`
- `masks<-`
- `matrix<-`
- `mcols<-`
- `metadata<-`
- `mgEdgeData<-`
- `mgEdgeDataDefaults<-`
- `mode<-`
- `mostattributes<-`
- `mz<-`
- `na.count<-`
- `names<-.POSIXlt`
- `names<-`
- `nodeData<-`
- `nodeDataDefaults<-`
- `nodeRenderInfo<-`
- `nodes<-`
- `notes<-`
- `nties<-`
- `nunique<-`
- `oldClass<-`
- `on_failure<-`
- `organism<-`
- `pData<-`
- `packageSlot<-`
- `parRenderInfo<-`
- `parent.env<-`
- `phenoData<-`
- `physical<-.default`
- `physical<-`
- `polygons<-`
- `preproc<-`
- `proj4string<-`
- `protocolData<-`
- `pubMedIds<-`
- `ranges<-`
- `regmatches<-`
- `removeAttrDataItem<-`
- `repfromto<-`
- `row.names<-.data.frame`
- `row.names<-.default`
- `row.names<-`
- `rowData<-`
- `rowRanges<-`
- `rowmask<-`
- `rownames<-`
- `runLength<-`
- `runValue<-`
- `sampleNames<-`
- `score<-`
- `sdiag<-`
- `se.exprs<-`
- `second<-`
- `seqinfo<-`
- `seqlengths<-`
- `seqlevels<-`
- `seqlevelsStyle<-`
- `seqnames<-`
- `seqtype<-`
- `sizeFactors<-`
- `slot<-`
- `snpCall<-`
- `snpCallProbability<-`
- `spChFIDs<-`
- `species<-`
- `split<-.data.frame`
- `split<-.default`
- `split<-`
- `start<-`
- `storage.mode<-`
- `storageMode<-`
- `str_sub<-`
- `strand<-`
- `stri_datetime_add<-`
- `stri_sub<-`
- `stri_subset<-`
- `stri_subset_charclass<-`
- `stri_subset_coll<-`
- `stri_subset_fixed<-`
- `stri_subset_regex<-`
- `subseq<-`
- `substr<-`
- `substring<-`
- `tclObj<-.tclVar`
- `tclObj<-`
- `tclvalue<-.default`
- `tclvalue<-.tclVar`
- `tclvalue<-`
- `tktitle<-`
- `tsp<-`
- `units<-.difftime`
- `units<-`
- `universe<-`
- `upperTriangle<-`
- `values<-`
- `varLabels<-`
- `varMetadata<-`
- `varnames<-`
- `virtual<-.default`
- `virtual<-`
- `width<-`
- `window<-.Vector`
- `window<-.factor`
- `window<-.vector`
- `window<-`
- `xmlAttrs<-`
- `xmlChildren<-`
- `xmlName<-`
- `xmlNamespace<-`
- `xmlNamespaces<-`
- `xmlParent<-`
- `xmlValue<-`
- `{`
- `|.bit`
- `|.bitwhich`
- `|.hexmode`
- `|.octmode`
- `|`
- `||`
- `~`
- a
- aM2bpG
- a_ply
- aaMap
- aaply
- aareg
- abIseq
- abIseq1
- abbey
- abbreviate
- abc.ci
- ability.cov
- abline
- abort
- abs
- abs_area
- absolute.size
- absoluteRanges
- abstract
- acast
- acbind
- acc
- accdeaths
- accept
- accept_json
- accept_xml
- accessions
- ace
- acepack
- acf
- acf2AR
- acfplot
- achievement
- acme
- acos
- acosh
- active
- actuals
- acw
- add
- add.scope
- add1
- addAttrToGeom
- addAttributes
- addChildren
- addClusterOptions
- addEdge
- addGrob
- addLast
- addNA
- addNextMethod
- addNode
- addSibling
- addTaskCallback
- addTclPath
- addVigs2WinMenu
- add_case
- add_column
- add_datalist
- add_headers
- add_margins
- add_ref_boxes
- add_ref_lines
- add_row
- addmargins
- address
- addterm
- adist
- adj
- adjacencyMatrix
- adjustcolor
- adply
- aeqSurv
- aes
- aes_
- aes_all
- aes_auto
- aes_cbc_decrypt
- aes_cbc_encrypt
- aes_ctr_decrypt
- aes_ctr_encrypt
- aes_gcm_decrypt
- aes_gcm_encrypt
- aes_keygen
- aes_q
- aes_string
- afcon
- agexact.fit
- aggenv
- aggfun
- aggregate
- aggregate.Vector
- aggregate.data.frame
- aggregate.nb
- aggregate.ts
- aggregating_zones
- agnes
- agreg.fit
- agrep
- agrepl
- agricolae
- agriculture
- aids
- aircondit
- aircondit7
- airdist
- airmiles
- airquality
- alarm
- alaska
- alias
- align
- aligned
- alist
- all
- all.bit
- all.bitwhich
- all.equal
- all.equal.POSIXt
- all.equal.character
- all.equal.default
- all.equal.envRefClass
- all.equal.environment
- all.equal.factor
- all.equal.formula
- all.equal.language
- all.equal.list
- all.equal.numeric
- all.equal.raw
- all.names
- all.ri
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- mergedTrellisLegendGrob
- mergeorder
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- message
- message_cnd
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- metaNameUndo
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- method.skeleton
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- packet.number
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- padAndClip
- page
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- pairlist
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- panel.superpose.2
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- panel.text
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- panel.tmd.qqmath
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- panel.voronoi
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- peek_option
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- pen.edf
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- percent
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- periodicSpline
- permn
- permutations
- permute
- person
- personList
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- phenoData
- phenoModel
- phiX174Phage
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- phyper
- physical
- physical.default
- pi
- pico
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- pillar
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- pkgDepends
- pkgKitten
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- pkg_env
- pkg_env_name
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- place.knots
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- plasma
- playWithPerPackageHelpPage
- plclust
- plineplot
- plnorm
- plogis
- plogr
- plot
- plot.AMMI
- plot.Gabriel
- plot.bayes
- plot.bayes2
- plot.default
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- plot.design
- plot.divchain
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- plot.function
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- plot.nb
- plot.new
- plot.relative
- plot.skater
- plot.snowTimingData
- plot.spcor
- plot.spec.coherency
- plot.spec.phase
- plot.stepfun
- plot.tile.list
- plot.triang.list
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- plot.venn
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- poly2nb
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- polylineGrob
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- polypath
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- pooledSD
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- pop.viewport
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- pos
- pos.to.env
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- position_nudge
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- pre
- preDrawDetails
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- predict
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- predplot
- prelimtlist
- prepanel.default.bwplot
- prepanel.default.cloud
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- prepanel.default.levelplot
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- prepend
- prependContent
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- preproc
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- pressure
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- pretty
- pretty.default
- prettyNum
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- print
- print.AsIs
- print.DLLInfo
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- print.DMS
- print.Date
- print.Dlist
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- print.ME_res
- print.NativeRoutineList
- print.POSIXct
- print.POSIXlt
- print.SFResult
- print.anova.gam
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- print.condition
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- print.data.frame
- print.default
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- print.eigen
- print.factor
- print.function
- print.gam
- print.glh.test
- print.gmsar
- print.hexmode
- print.jclist
- print.jcmulti
- print.libraryIQR
- print.list.pairs
- print.listof
- print.listw
- print.localmoranex
- print.localmoransad
- print.moranex
- print.moransad
- print.nb
- print.noquote
- print.numeric_version
- print.octmode
- print.packageInfo
- print.physical
- print.proc_time
- print.restart
- print.ri
- print.rle
- print.sarlm
- print.sarlm.pred
- print.simple.list
- print.snowTimingData
- print.spautolm
- print.spcor
- print.srcfile
- print.srcref
- print.stsls
- print.summary.gam
- print.summary.gmsar
- print.summary.localmoransad
- print.summary.moransad
- print.summary.sarlm
- print.summary.spautolm
- print.summary.stsls
- print.summary.table
- print.summaryDefault
- print.table
- print.tileInfo
- print.virtual
- print.warnings
- print.xtable
- print.xtableFtable
- print.xtableList
- print.xtableMatharray
- printAtomicVectorInAGrid
- printCoefmat
- printSpMatrix
- printSpMatrix2
- print_if_interactive
- printcp
- prior.two.parameters
- prmat
- prmatrix
- probability_trans
- probeRangeMapper
- probit_trans
- probmap
- probplot
- proc.time
- process.events
- processXInclude
- processingInstruction.SAX
- prod
- product
- profile
- progress
- progress_bar
- progress_none
- progress_text
- progress_time
- progress_tk
- progress_win
- prohibitGeneric
- proj
- proj4string
- promax
- promoters
- prompt
- promptClass
- promptData
- promptImport
- promptMethods
- promptPackage
- prop.table
- prop.test
- prop.trend.test
- proteins
- protocolData
- prototype
- provideDimnames
- provider
- providerVersion
- prune
- prune.rpart
- prunecost
- prunemst
- ps.options
- psetdiff
- psi.bisquare
- psi.hampel
- psi.huber
- psigamma
- psignrank
- pskill
- psms
- psnice
- pspline
- psurvreg
- psychademic
- pt
- ptail
- ptukey
- pubMedIds
- puffin
- punif
- punion
- purl
- push
- push.viewport
- pushBack
- pushBackLength
- pushViewport
- push_options
- putPlot
- pvalueFormatter
- pvclust
- pvec
- pvpick
- pvrect
- pvs
- pweibull
- pwilcox
- pyears
- q
- qbeta
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- qbirthday
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- qchisq
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- qgamma
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- qlnorm
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- qnbinom
- qnorm
- qplot
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- qq
- qq.gam
- qq_show
- qqline
- qqmath
- qqnorm
- qqnorm.aov
- qqplot
- qr
- qr.Q
- qr.R
- qr.X
- qr.coef
- qr.default
- qr.fitted
- qr.qty
- qr.qy
- qr.resid
- qr.solve
- qrR
- qsignrank
- qsurvreg
- qt
- qtukey
- quade.test
- quadlines
- quadplot
- quadpoints
- quadtrafo
- quakes
- quality
- qualitySubstitutionMatrices
- quantcut
- quantile
- quantile.Rle
- quarter
- quarters
- quarters.Date
- quarters.POSIXt
- quartz
- quartz.options
- quartz.save
- quartzFont
- quartzFonts
- quasi
- quasibinomial
- quasipoisson
- queencell
- queryHits
- queryLength
- quickdf
- quickorder
- quickplot
- quicksort
- quicksortorder
- quinModel
- quine
- quit
- qunif
- quo
- quo_expr
- quo_get_env
- quo_get_expr
- quo_is_call
- quo_is_lang
- quo_is_missing
- quo_is_null
- quo_is_symbol
- quo_is_symbolic
- quo_label
- quo_name
- quo_set_env
- quo_set_expr
- quo_squash
- quo_text
- quos
- quos_auto_name
- quote
- qweibull
- qwilcox
- r
- r2dtable
- rBind
- rTweedie
- rWishart
- r_ply
- radixorder
- radixsort
- radixsortorder
- raftery.diag
- rainbow
- rainbow_hcl
- raise_to_power
- ralstonia
- ramorder
- ramsort
- ramsortorder
- rand_bytes
- rand_num
- rand_seed
- random.effects
- randomEGraph
- randomGraph
- randomNodeGraph
- randu
- ranef
- range
- range.bit
- range.bitwhich
- range.default
- range.ri
- range01
- rangeComparisonCodeToLetter
- ranges
- rank
- rankMatrix
- rankSeqlevels
- raply
- rapply
- rasterGrob
- rasterImage
- ratetable
- ratetableDate
- rational
- rats
- raw
- rawConnection
- rawConnectionValue
- rawShift
- rawToBits
- rawToChar
- raw_along
- raw_len
- raw_output
- rbeta
- rbind
- rbind.DataFrame
- rbind.SpatialLines
- rbind.SpatialLinesDataFrame
- rbind.SpatialMultiPoints
- rbind.SpatialMultiPointsDataFrame
- rbind.SpatialPixels
- rbind.SpatialPixelsDataFrame
- rbind.SpatialPoints
- rbind.SpatialPointsDataFrame
- rbind.SpatialPolygons
- rbind.SpatialPolygonsDataFrame
- rbind.data.frame
- rbind.fill
- rbind.fill.matrix
- rbind.pages
- rbind2
- rbind_pages
- rbindlist
- rbinom
- rbridge
- rc.getOption
- rc.options
- rc.settings
- rc.status
- rcauchy
- rchisq
- rcond
- rda
- rdaPath
- rdirichlet
- rdiscrete
- rdply
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- read
- read.00Index
- read.AnnotatedDataFrame
- read.DIF
- read.ENVI
- read.MIAME
- read.S
- read.agpMask
- read.and.check
- read.arff
- read.asciigrid
- read.coda
- read.coda.interactive
- read.csv
- read.csv2
- read.dat2listw
- read.dbf
- read.dcf
- read.delim
- read.delim2
- read.dta
- read.epiinfo
- read.fortran
- read.ftable
- read.fwf
- read.gal
- read.gapMask
- read.geoda
- read.gif
- read.gwt2nb
- read.jags
- read.liftMask
- read.matrix.csr
- read.mtp
- read.octave
- read.openbugs
- read.rmMask
- read.socket
- read.spss
- read.ssd
- read.systat
- read.table
- read.trfMask
- read.xls
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- readAAMultipleAlignment
- readAAStringSet
- readBStringSet
- readBin
- readChar
- readCitationFile
- readDNAMultipleAlignment
- readDNAStringSet
- readExpressionSet
- readHB
- readHTMLList
- readHTMLTable
- readKallisto
- readKallistoBootstrap
- readKeyValueDB
- readLines
- readMM
- readNEWS
- readPreference
- readRDS
- readRGB
- readRNAMultipleAlignment
- readRNAStringSet
- readRenviron
- readSolrDoc
- read_bytes
- read_cert
- read_cert_bundle
- read_chunk
- read_demo
- read_json
- read_key
- read_lines
- read_lines_bytes
- read_p12
- read_p7b
- read_pem
- read_pubkey
- read_rforge
- read_yaml
- readhex
- readline
- realize
- recalc
- recast
- recenter
- reciprocal_trans
- reconcilePropertiesAndPrototype
- recordGraphics
- recordPlot
- recover
- rect
- rect.hclust
- rectGrob
- rectangle.window
- recvData
- recvData.MPInode
- recvData.NWSnode
- recvData.SOCKnode
- recvOneData
- recvOneData.MPIcluster
- recvOneData.NWScluster
- recvOneData.SOCKcluster
- recvOneResult
- recvResult
- recycleArg
- recycleCharacterArg
- recycleIntegerArg
- recycleLogicalArg
- recycleNumericArg
- red
- redblue
- redgreen
- reduce
- reduce.nn
- refdim
- reflect
- reformulate
- reg.finalizer
- reg.gprior.post
- reg.homog
- regex
- regexec
- regexpr
- registerImplicitGenerics
- registerPlugin
- registerS3method
- registerS3methods
- registeredRenderers
- regmatches
- regroup
- regtest.bit
- regular_minor_breaks
- rejectionRate
- rejectsampling
- rel
- relativeRanges
- relativeneigh
- releaseDate
- releaseName
- relevel
- relist
- relistToClass
- remapHits
- rematchDefinition
- remission
- remove
- remove.duplicates
- remove.packages
- remove.vars
- removeAttributes
- removeChildren
- removeClass
- removeEdge
- removeEdgesByWeight
- removeGeneric
- removeGrob
- removeMethod
- removeMethods
- removeMethodsObject
- removeNode
- removeNodes
- removeSource
- removeTaskCallback
- removeXMLNamespaces
- remove_missing
- remove_rownames
- rename
- rename.vars
- renameSeqlevels
- renderDependencies
- renderDocument
- renderHtmlTableWidget
- renderMarkdown
- renderTags
- render_asciidoc
- render_axes
- render_html
- render_jekyll
- render_latex
- render_listings
- render_markdown
- render_rst
- render_strips
- render_sweave
- render_textile
- rendererExists
- rendererOutputType
- renumerate
- reorder
- reorder.factor
- reorderGrob
- rep
- rep.Date
- rep.POSIXct
- rep.POSIXlt
- rep.factor
- rep.int
- rep.numeric_version
- rep2abI
- rep_along
- rep_len
- repair_names
- repeat.time
- repfromto
- replace
- replaceAt
- replaceLetterAt
- replaceNodes
- replaceROWS
- replay
- replayPlot
- replicate
- replications
- reporter
- representation
- require
- requireMethods
- requireNamespace
- rerequest
- resample
- resampling.cv
- resampling.model
- resaveRdaFiles
- rescale
- rescale01
- rescale11
- rescale_max
- rescale_mid
- rescale_none
- rescale_pal
- reset
- reset.options
- resetClass
- resetGeneric
- resetOptions
- resetOptions.character
- resetOptions.default
- reset_config
- reshape
- reshape2
- resid
- residplot
- residuals
- residuals.gam
- residuals.glm
- residuals.gmsar
- residuals.lm
- residuals.sarlm
- residuals.spautolm
- residuals.stsls
- resize
- resizePanels
- resolution
- resolveDependencies
- resolveHJust
- resolveRasterSize
- resolveVJust
- resort_base
- restartDescription
- restartFormals
- restartSession
- restarting
- restorePreserveChunks
- restoreSeqlevels
- restore_raw_output
- restrict
- retinopathy
- retracemem
- return
- returnValue
- return_from
- return_to
- rev
- rev.Rle
- rev.default
- rev.rlepack
- revElements
- revalue
- reverse
- reverseComplement
- reverseEdgeDirections
- reverseSplit
- reverse_trans
- revmap
- revoke_all
- rexp
- rf
- rfs
- rgamma
- rgb
- rgb2hsv
- rgb2mnsl
- rgeom
- rglist
- rhDNase
- rhyper
- ri
- rice
- rich.colors
- ridge
- rig
- rigamma
- right
- ripemd160
- rivers
- rlang
- rle
- rleid
- rleidv
- rlepack
- rleunpack
- rlm
- rlnorm
- rlogis
- rlply
- rm
- rmnorm
- rms.curv
- rmt
- rmultinom
- rmultinomial
- rmultz2
- rmvn
- rnbinom
- rnegbin
- rnorm
- road
- robustt
- rocco
- rock
- roman2int
- rookcell
- rootogram
- rotifer
- round
- round.Date
- round.POSIXt
- round_any
- roundrectGrob
- row
- row.names
- row.names.data.frame
- row.names.default
- rowAlls
- rowAnyMissings
- rowAnyNAs
- rowAnys
- rowAvgsPerColSet
- rowCollapse
- rowCounts
- rowCummaxs
- rowCummins
- rowCumprods
- rowCumsums
- rowData
- rowDiffs
- rowIQRDiffs
- rowIQRs
- rowLogSumExps
- rowMadDiffs
- rowMads
- rowMax
- rowMaxs
- rowMeans
- rowMeans2
- rowMedians
- rowMin
- rowMins
- rowOrderStats
- rowProds
- rowQ
- rowQuantiles
- rowRanges
- rowRanks
- rowSdDiffs
- rowSds
- rowSums
- rowSums2
- rowTabulates
- rowVarDiffs
- rowVars
- rowWeightedMads
- rowWeightedMeans
- rowWeightedMedians
- rowWeightedSds
- rowWeightedVars
- rowid
- rowid_to_column
- rowidv
- rowmask
- rownames
- rownames_to_column
- rowsum
- rowsum.data.frame
- rowsum.default
- rpart
- rpart.control
- rpart.exp
- rpois
- rpretty
- rpubsUpload
- rsa_decrypt
- rsa_encrypt
- rsa_keygen
- rsignrank
- rsparsematrix
- rsq.rpart
- rsqliteVersion
- rst2pdf
- rst_abort
- rst_exists
- rst_jump
- rst_list
- rst_maybe_jump
- rst_muffle
- rstandard
- rstudent
- rstudioapi
- rsurvreg
- rt
- rtPCR
- rtags
- rtime
- rtruncated
- rug
- rule
- runLength
- runMPIslave
- runValue
- runif
- runmad
- runmax
- runmean
- runmed
- runmin
- running
- runq
- runquantile
- runsd
- runsum
- runwtsum
- ruspini
- rweibull
- rwiener
- rwilcox
- rwmetrop
- rygbp
- s
- sQuote
- sRGB
- sacsarlm
- saddle
- saddle.distn
- safeExplode
- salinity
- sammon
- sample
- sample.ExpressionSet
- sample.MultiSet
- sample.int
- sample.split
- sampleNames
- samples
- sanitize
- sanitize.final
- sanitize.numbers
- sapply
- saturate
- save
- save.image
- saveDb
- saveHDF5SummarizedExperiment
- savePlot
- savePlotAsImage
- saveRDS
- saveWidget
- saveXML
- saveXStringSet
- save_html
- savehistory
- scaffoldWidget
- scale
- scale.default
- scale_alpha
- scale_alpha_continuous
- scale_alpha_discrete
- scale_alpha_identity
- scale_alpha_manual
- scale_color_brewer
- scale_color_continuous
- scale_color_discrete
- scale_color_distiller
- scale_color_gradient
- scale_color_gradient2
- scale_color_gradientn
- scale_color_grey
- scale_color_hue
- scale_color_identity
- scale_color_manual
- scale_colour_brewer
- scale_colour_continuous
- scale_colour_date
- scale_colour_datetime
- scale_colour_discrete
- scale_colour_distiller
- scale_colour_gradient
- scale_colour_gradient2
- scale_colour_gradientn
- scale_colour_grey
- scale_colour_hue
- scale_colour_identity
- scale_colour_manual
- scale_fill_brewer
- scale_fill_continuous
- scale_fill_date
- scale_fill_datetime
- scale_fill_discrete
- scale_fill_distiller
- scale_fill_gradient
- scale_fill_gradient2
- scale_fill_gradientn
- scale_fill_grey
- scale_fill_hue
- scale_fill_identity
- scale_fill_manual
- scale_linetype
- scale_linetype_continuous
- scale_linetype_discrete
- scale_linetype_identity
- scale_linetype_manual
- scale_radius
- scale_shape
- scale_shape_continuous
- scale_shape_discrete
- scale_shape_identity
- scale_shape_manual
- scale_size
- scale_size_area
- scale_size_continuous
- scale_size_date
- scale_size_datetime
- scale_size_discrete
- scale_size_identity
- scale_size_manual
- scale_x_continuous
- scale_x_date
- scale_x_datetime
- scale_x_discrete
- scale_x_log10
- scale_x_reverse
- scale_x_sqrt
- scale_x_time
- scale_y_continuous
- scale_y_date
- scale_y_datetime
- scale_y_discrete
- scale_y_log10
- scale_y_reverse
- scale_y_sqrt
- scale_y_time
- scales
- scan
- scans
- scat
- scatmat
- scatter.smooth
- scheffe.test
- schemaValidationErrorHandler
- schmidt
- scientific
- scientific_format
- scoped_bindings
- scoped_env
- scoped_envs
- scoped_names
- scoped_options
- score
- scp
- screen
- screeplot
- sd
- sdDiff
- sdiag
- se.contrast
- se.exprs
- seD
- seal
- sealClass
- seals
- search
- searchpaths
- seaweed
- sec_axis
- second
- see_if
- seed
- seek
- seek.connection
- seekViewport
- seemsS4Object
- segments
- segmentsGrob
- segplot
- seine
- select
- select.list
- select.spatial
- selectChannels
- selectDirectory
- selectFile
- selectHits
- selectMethod
- selectNearest
- selectSome
- selectSuperClasses
- selfStart
- selfmatch
- selfmatchIntegerPairs
- selfmatchIntegerQuads
- semat
- sendCall
- sendData
- sendData.MPInode
- sendData.NWSnode
- sendData.SOCKnode
- sendToConsole
- sentences
- seplot
- seq
- seq.Date
- seq.POSIXt
- seq.default
- seq.int
- seq2
- seq2_along
- seq_along
- seq_gradient_pal
- seq_len
- seq_mnsl
- seqinfo
- seqlengths
- seqlevels
- seqlevels0
- seqlevelsInGroup
- seqlevelsInUse
- seqlevelsStyle
- seqnames
- seqtype
- sequence
- sequential_hcl
- serialize
- serializeJSON
- sessionInfo
- set
- set.ClusterOption
- set.VerboseOption
- set.ZeroPolicyOption
- set.coresOption
- set.mcOption
- set.seed
- set.spChkOption
- set2key
- set2keyv
- setAs
- setBitIndicators
- setBreakpoint
- setChildren
- setClass
- setClassUnion
- setCompilerOptions
- setCursorPosition
- setDF
- setDT
- setDTthreads
- setDataPart
- setDefaultCluster
- setDefaultClusterOptions
- setDocumentContents
- setEPS
- setGeneric
- setGenericImplicit
- setGraphicsEventEnv
- setGraphicsEventHandlers
- setGrob
- setGroupGeneric
- setHook
- setInpBimapFilter
- setIs
- setListElement
- setLoadAction
- setLoadActions
- setMPIcluster
- setMethod
- setMethods
- setNames
- setNamespaceInfo
- setNumericRounding
- setOldClass
- setPS
- setPackageName
- setPersistentValue
- setPrimitiveMethods
- setRcppClass
- setRealizationBackend
- setRefClass
- setReplaceMethod
- setRepositories
- setSelectionRanges
- setSessionTimeLimit
- setTCPNoDelay
- setTimeLimit
- setTkProgressBar
- setTxtProgressBar
- setValidity
- setValidity2
- setWidgetIdSeed
- setXMLNamespace
- set_Polypath
- set_PolypathRule
- set_ReplCRS_warn
- set_alias
- set_attrs
- set_callback
- set_chr_encoding
- set_col_regions
- set_colnames
- set_config
- set_config_in
- set_cookies
- set_env
- set_expr
- set_header
- set_hooks
- set_ll_TOL
- set_ll_warn
- set_names
- set_parent
- set_rownames
- set_str_encoding
- set_tidy_names
- setattr
- setattributes
- setcolorder
- setdiff
- setdiff.Vector
- setdiff.nb
- setequal
- setequal.Vector
- setindex
- setindexv
- setkey
- setkeyv
- setnames
- setorder
- setorderv
- setwd
- shQuote
- shQuoteIfNeeded
- sha1
- sha1_hash
- sha2
- sha224
- sha256
- sha384
- sha512
- shape_pal
- shapiro.test
- shardsplot
- sheetCount
- sheetNames
- shellorder
- shellsort
- shellsortorder
- shift
- shiftApply
- shingle
- shinyRenderWidget
- shinyWidgetOutput
- ships
- shoes
- shouldPrint
- should_stop
- show
- show.settings
- showAsCell
- showClass
- showConnections
- showDefault
- showDialog
- showExtends
- showGrob
- showMethods
- showMlist
- showNonASCII
- showNonASCIIfile
- showPrompt
- showQCData
- showQuestion
- showTree
- showViewport
- show_ansi_colors
- show_col
- shrimp
- shuttle
- sigToEnv
- sigma
- sigmoid
- sign
- signTabulate
- sign_oauth1.0
- sign_oauth2.0
- signalCondition
- signature
- signature_create
- signature_verify
- signif
- silhouette
- silver
- sim2jam
- simcontour
- similar.listw
- similarity
- simpleCondition
- simpleError
- simpleKey
- simpleMessage
- simpleSmoothTs
- simpleTheme
- simpleWarning
- simplex
- simplify2array
- simulate
- simulate.lme
- simulation.model
- sin
- sinRepAmmi
- singer
- single
- single_quote
- singleton
- sinh
- sink
- sink.number
- sinkWorkerOutput
- sinkplot
- sinpi
- sir
- sizeDiss
- sizeFactors
- sizeof
- sizingPolicy
- skater
- skewness
- skewpart
- sknn
- slanczos
- slaveLoop
- sleep
- slice
- slice.index
- slidingIRanges
- slidingViews
- slidingWindows
- slot
- slotNames
- slotsFromS3
- sluggerdata
- smartbind
- smartlegend
- smartypants
- smiths
- smooth
- smooth.construct
- smooth.construct.ad.smooth.spec
- smooth.construct.bs.smooth.spec
- smooth.construct.cc.smooth.spec
- smooth.construct.cp.smooth.spec
- smooth.construct.cr.smooth.spec
- smooth.construct.cs.smooth.spec
- smooth.construct.ds.smooth.spec
- smooth.construct.gp.smooth.spec
- smooth.construct.mrf.smooth.spec
- smooth.construct.ps.smooth.spec
- smooth.construct.re.smooth.spec
- smooth.construct.sf.smooth.spec
- smooth.construct.so.smooth.spec
- smooth.construct.sos.smooth.spec
- smooth.construct.sw.smooth.spec
- smooth.construct.t2.smooth.spec
- smooth.construct.tensor.smooth.spec
- smooth.construct.tp.smooth.spec
- smooth.construct.ts.smooth.spec
- smooth.construct2
- smooth.f
- smooth.spline
- smooth2random
- smoothCon
- smoothEnds
- smoothScatter
- sn2listw
- snails
- snip.rpart
- snow
- snow.time
- snpCall
- snpCallProbability
- soccergoals
- socketConnection
- socketSelect
- soi.graph
- soil
- solder
- solve
- solve.default
- solve.qr
- solveUserSEW
- solveUserSEW0
- somgrid
- sort
- sort.GenomicRanges
- sort.POSIXlt
- sort.Vector
- sort.default
- sort.int
- sort.list
- sortSeqlevels
- sortSilhouette
- sortedXyData
- source
- sourceCpp
- sourceMarkers
- sourcetools
- sp
- sp.correlogram
- sp.grid
- sp.lines
- sp.mantel.mc
- sp.panel.layout
- sp.plot
- sp.points
- sp.polygons
- sp.text
- sp.theme
- sp.vcov
- spBreg_lag
- spChFIDs
- spData
- spDists
- spDistsN1
- spMatrix
- spNamedVec
- spTransform
- space
- spam_setup
- spam_update_setup
- span
- sparks
- sparse.model.matrix
- sparseM2Graph
- sparseMatrix
- sparseVector
- spasm.construct
- spasm.smooth
- spasm.sp
- spatial
- spautolm
- spdep
- spec.ar
- spec.pgram
- spec.taper
- specData
- species
- speciesMap
- specplot
- spectra
- spectrum
- spectrum0
- spectrum0.ar
- sphercov
- spin
- spin_child
- spineplot
- splat
- splice
- spline
- spline.des
- splineDesign
- splineKnots
- splineOrder
- splinefun
- splinefunH
- splines
- split
- split.Date
- split.DelayedArray
- split.POSIXct
- split.data.frame
- split.default
- split.screen
- splitAsList
- splitCols
- splitFormula
- splitIndices
- splitLines4Table
- splitList
- splitRanges
- splitRows
- split_indices
- split_labels
- splitstackshape
- splom
- spmap.to.lev
- sppanel
- spplot
- spplot.key
- spplot.locator
- sprint
- sprintf
- spsample
- spweights.constants
- sqlAppendTable
- sqlAppendTableTemplate
- sqlColumnToRownames
- sqlCommentSpec
- sqlCreateTable
- sqlData
- sqlInterpolate
- sqlParseVariables
- sqlParseVariablesImpl
- sqlQuoteSpec
- sqlRownamesToColumn
- sqliteBuildTableDefinition
- sqliteCopyDatabase
- sqliteQuickColumn
- sqrt
- sqrt_trans
- sqrtm
- squash
- squash_chr
- squash_cpl
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- squish_infinite
- srPhiX174
- srcfile
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- srcfilecopy
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- ssp.plot
- ssw
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- stability.par
- stack
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- stanford2
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- stars
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- start
- startDynamicHelp
- startElement.SAX
- startIndex
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- stat.freq
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- steam
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- stopCluster.NWScluster
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- storage.mode
- storageMode
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- str
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- stri_datetime_add
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- stri_enc_fromutf32
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- stri_enc_toutf32
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- stri_endswith
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- stri_extract_all_coll
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- stri_extract_all_regex
- stri_extract_all_words
- stri_extract_first
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- stri_extract_first_charclass
- stri_extract_first_coll
- stri_extract_first_fixed
- stri_extract_first_regex
- stri_extract_first_words
- stri_extract_last
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- stri_flatten
- stri_info
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- stri_order
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- stri_pad_left
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- stri_paste
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- stri_rand_lipsum
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- stri_read_lines
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- stri_replace
- stri_replace_all
- stri_replace_all_charclass
- stri_replace_all_coll
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- stri_replace_all_regex
- stri_replace_first
- stri_replace_first_charclass
- stri_replace_first_coll
- stri_replace_first_fixed
- stri_replace_first_regex
- stri_replace_last
- stri_replace_last_charclass
- stri_replace_last_coll
- stri_replace_last_fixed
- stri_replace_last_regex
- stri_replace_na
- stri_reverse
- stri_sort
- stri_split
- stri_split_boundaries
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- stri_split_coll
- stri_split_fixed
- stri_split_lines
- stri_split_lines1
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- stri_startswith
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- stri_stats_latex
- stri_sub
- stri_subset
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- stri_subset_regex
- stri_timezone_get
- stri_timezone_info
- stri_timezone_list
- stri_timezone_set
- stri_trans_char
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- stri_trans_isnfc
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- stri_trans_isnfkc
- stri_trans_isnfkc_casefold
- stri_trans_isnfkd
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- stri_trans_nfc
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- stri_trans_nfkc
- stri_trans_nfkc_casefold
- stri_trans_nfkd
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- testInstalledPackage
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- testSelectArgs
- testVirtual
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- true
- truehist
- truelength
- trunc
- trunc.Date
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- twitter_spambots
- twoWayAlphabetFrequency
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- type
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- type_of
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- ucpm
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- ugraph
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- underline
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- union
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- union.nb
- uniqTsparse
- unique
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- unique.data.frame
- unique.default
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- unique.numeric_version
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- unique.warnings
- uniqueLetters
- uniqueN
- uniquecombs
- uniroot
- unit
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- unit.length
- unit.pmax
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- unit.rep
- unitScale
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- units
- units.difftime
- universe
- unix.time
- unknownToNA
- unlink
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- unlist2
- unlist_list_of_XVectorList
- unloadNamespace
- unlockBinding
- unmasked
- unmatrix
- unname
- unpack
- unrowname
- unserialize
- unserializeJSON
- unsplit
- unsplit_list_of_XVectorList
- unstack
- unstrand
- unstrsplit
- untangle.specials
- untar
- untrace
- untracemem
- unz
- unzip
- upViewport
- update
- update.default
- update.formula
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- update.packageStatus
- update.packages
- updateDialog
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- updateObject
- updateObjectFromSlots
- updateObjectTo
- updateOldESet
- updateOptions
- updateOptions.character
- updateOptions.default
- update_geom_defaults
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- update_stat_defaults
- updown
- upgrade
- upload_file
- upper.to.lower.tri.inds
- upper.tri
- upperTriangle
- uppertriangle
- uq
- uqf
- uqs
- urban_agglomerations
- urine
- url
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