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Gallup - Gamma - Gasoline - GeneBiotypeFilter - GeneEndFilter - GeneIdFilter - GeneStartFilter - GenenameFilter - GenomeDescription - GenomeInfoDb - GenomeInfoDbData - GenomicRanges - GenomicRangesList - Geom - GeomAbline - GeomAnnotationMap - GeomArea - GeomBar - GeomBlank - GeomBoxplot - GeomCol - GeomContour - GeomCrossbar - GeomCurve - GeomCustomAnn - GeomDensity - GeomDensity2d - GeomDotplot - GeomErrorbar - GeomErrorbarh - GeomHex - GeomHline - GeomLabel - GeomLabelRepel - GeomLine - GeomLinerange - GeomLogticks - GeomMap - GeomPath - GeomPoint - GeomPointrange - GeomPolygon - GeomQuantile - GeomRaster - GeomRasterAnn - GeomRect - GeomRibbon - GeomRug - GeomSegment - GeomSmooth - GeomSpoke - GeomStep - GeomText - GeomTextRepel - GeomTile - GeomViolin - GeomVline - German - GermanCredit - Glucose - Glucose2 - Glycoalkaloids - Golf - Governor - Gpa - Grades - Graduate - Greenriv - GridTopology - Grnriv2 - Groupabc - Groups - Gun - Gym - H2LGrouping - HEAD - HLS - HNF4alpha - HPDinterval - HPDinterval.lagImpact - HSD.test - HSV - HTML - HTMLheader - HTTP_VERSION_1_0 - HTTP_VERSION_1_1 - HTTP_VERSION_LAST - HTTP_VERSION_NONE - HUGE - Habits - HairEyeColor - Haptoglo - Hardware - Hardwood - Harman23.cor - Harman74.cor - Hausman.test - Hco2006 - Heat - Heating - Hershey - HexPoints2SpatialPolygons - Hilbert - Hits - HitsList - Hodgkin - HoltWinters - Homes - Homework - Honda - Hostile - Housing - Hurrican - I - IDateTime - IDvaluesGridTopology - IDvaluesSpatialPixels - IGF - IPos - IQR - IRanges - IRangesList - ISOdate - ISOdatetime - IUPAC_CODE_MAP - Iceberg - IlluminaQuality - Im - Income - Independent - Indian - Indiapol - Indometh - Indy500 - Inflatio - Initialize - Inletoil - Inmate - InsectSprays - Inspect - Insulate - Insurance - IntegerList - Iqgpa - Irises - JS - Jacobian_W - Jdpower - Jobsat - JohnsonJohnson - KALLISTO_ASSAYS - KEGGFrame - KNex - KalmanForecast - KalmanLike - KalmanRun - KalmanSmooth - Kaver - Kenvl - KernSmooth - Kfn - KhatriRao - Kidsmoke - Kilowatt - Kinder - LAB - LDEsysMat - LETTERS - LLint - LR.sarlm - LR1.sarlm - LR1.spautolm - LSD.test - LUV - LU_prepermutate_setup - LU_setup - La.svd - La_library - La_version - LakeHuron - Laminect - LdFlags - Lead - Leader - LearnBayes - Lethal - Life - LifeCycleSavings - Lifespan - Ligntmonth - Line - LineLength - Lines - LinesLength - List - Lkeyname - Lkeys - Llength - Loblolly - Lodge - Logic - LogicalList - LogitBoost - Longtail - Lowabil - LxT - MAPKsig - MASS - MCMCsamp - ME - MIAME - Machines - Magnesiu - Malpract - Manager - ManyToManyGrouping - ManyToOneGrouping - Map - Marked - Mask - MaskCollection.show_frame - Math - Math.Date - Math.POSIXt - Math.data.frame - Math.difftime - Math.factor - Math2 - MathAchSchool - MathAchieve - Mathcomp - Mathpro - Matrix - MatrixClass - Matrix_J_setup - Matrix_setup - Maze - Meat - MedUnits - Median - Median.test - Melanoma - Mental - Mercury - MethodAddCoerce - MethodsList - MethodsListSelect - Metrent - Milk - Miller - Miller1 - Mod - Module - Moisture - Monoxide - Movie - MultiGraph - Muscle - Music - N50 - NAToUnknown - NA_LLint_ - NCBICHIP_DB_SeedGenerator - NCList - NCLists - NCOL - NChannelSet - NLSstAsymptotic - NLSstClosestX - NLSstLfAsymptote - NLSstRtAsymptote - NOBASEFIX - NOBLANKS - NOCDATA - NODICT - NOENT - NOERROR - NONET - NOWARNING - NOXINCNODE - NP2009code - NROW - NSBS - NSCLEAN - NaiveBayes - Name - Names - Nascar - Negate - Nervous - NewObject - Newsstand - NextMethod - Nfldraf2 - Nfldraft - Nicotine - Nile - Nitrendipene - Null - NumericList - OLD10 - OLDSAX - OME - Oats - OlsonNames - Ontology - Ops - Ops.Date - Ops.POSIXt - Ops.data.frame - Ops.difftime - Ops.factor - Ops.numeric_version - Ops.ordered - OptionsManager - Orange - OrchardSprays - Orioles - Orthodont - Ovary - Oxboys - Oxide - Oxytocin - PAM120 - PAM250 - PAM30 - PAM40 - PAM70 - PATCH - PBG - PBIB.test - PDict - PEDANTIC - POST - PP.test - PUT - PWM - PWMscoreStartingAt - Pairs - PairwiseAlignments - PairwiseAlignmentsSingleSubject - Parented - PartitioningByEnd - PartitioningByWidth - PartitioningMap - Patrol - Pearson - Phenobarb - Phone - PhredQuality - Pima.te - Pima.tr - Pima.tr2 - Pixel - PlantGrowth - Poison - Politic - Pollutio - Polygon - Polygons - Porosity - Position - PositionDodge - PositionFill - PositionIdentity - PositionJitter - PositionJitterdodge - PositionNudge - PositionStack - Poverty - Precinct - Predict.matrix - Predict.matrix.Bspline.smooth - Predict.matrix.cr.smooth - Predict.matrix.cs.smooth - Predict.matrix.cyclic.smooth - Predict.matrix.duchon.spline - Predict.matrix.gp.smooth - Predict.matrix.mrf.smooth - Predict.matrix.pspline.smooth - Predict.matrix.random.effect - Predict.matrix.sf - Predict.matrix.soap.film - Predict.matrix.sos.smooth - Predict.matrix.sw - Predict.matrix.t2.smooth - Predict.matrix.tensor.smooth - Predict.matrix.tprs.smooth - Predict.matrix.ts.smooth - Predict.matrix2 - PredictMat - Prejudic - Presiden - Press - Prognost - Program - ProtGenerics - ProteinIdFilter - Psat - Psim - Psych - Puerto - Puromycin - Quail - Quality - QualityScaledAAStringSet - QualityScaledBStringSet - QualityScaledDNAStringSet - QualityScaledRNAStringSet - Quinidine - Quote - R.Version - R.home - R.version - R.version.string - R6 - R6Class - RBioinf_group - RColorBrewer - RCurl - RECOVER - REGW.test - RETRY - RGB - RNAMultipleAlignment - RNAString - RNAStringSet - RNAStringSetList - RNA_ALPHABET - RNA_BASES - RNA_GENETIC_CODE - RNGkind - RNGversion - ROWNAMES - RSQLite - RShowDoc - RSiteSearch - R_system_version - Rabbit - Rail - Rainks - Randd - RangedData - RangedSelection - RangesList - Rat - RatPupWeight - Ratings - Rattribnames - RawList - Rcmd - Rcpp - Rcpp.package.skeleton - Rcpp.plugin.maker - RcppLdFlags - Rd2HTML - Rd2ex - Rd2latex - Rd2txt - Rd2txt_options - RdTextFilter - Rd_db - RdaCollection - Rdiff - Rdindex - Re - Reaction - Reading - Readiq - Recall - Reduce - Referend - Region - Register - Rehab - Relaxin - Remedial - Remifentanil - Rentals - Repair - Reshape - Retail - RioChillon - Rkeyname - Rkeys - Rle - RleArray - RleList - RleViewsList - Rlength - Rlogo - Ronbrown1 - Ronbrown2 - Rotation - Rows - Rprof - Rprofmem - Rrank - Rtangle - RtangleSetup - RtangleWritedoc - Rubber - Rural - RweaveChunkPrefix - RweaveEvalWithOpt - RweaveLatex - RweaveLatexFinish - RweaveLatexOptions - RweaveLatexSetup - RweaveLatexWritedoc - RweaveTryStop - S3Class - S3Part - S4Vectors - SAX1 - SCB - SE_classic_setup - SE_interp_setup - SE_whichMin_setup - SIGCHLD - SIGCONT - SIGHUP - SIGINT - SIGKILL - SIGN.test - SIGQUIT - SIGSTOP - SIGTERM - SIGTSTP - SIGUSR1 - SIGUSR2 - SJ - SNK.test - SOM - SP500 - SQL - SQLITE_RO - SQLITE_RW - SQLITE_RWC - SQLKeywords - SQLite - SRS - SSD - SSI - SSLVERSION_DEFAULT - SSLVERSION_LAST - SSLVERSION_SSLv2 - SSLVERSION_SSLv3 - SSLVERSION_TLSv1 - SSasymp - SSasympOff - SSasympOrig - SSbiexp - SSfol - SSfpl - SSgompertz - SSlogis - SSmicmen - SSweibull - SW - Salary - Salinity - Sat - Saving - Scale - ScaleContinuous - ScaleContinuousDate - ScaleContinuousDatetime - ScaleContinuousIdentity - ScaleContinuousPosition - ScaleDiscrete - ScaleDiscreteIdentity - ScaleDiscretePosition - Scales - Schizop2 - Schizoph - Schur - SeatacWeather - Seatbelt - Seatbelts - Secondary - SelfHits - Selfdefe - Senior - Sentence - SeqNameFilter - SeqStrandFilter - Seqinfo - SharedRaw - SharedRaw.read - SharedRaw.readComplexes - SharedRaw.readInts - SharedRaw.write - SharedRaw.writeInts - SharedVector.compare - SharedVector.copy - Shepard - Shkdrug - Shock - Shoplift - Short - Shuttle - SignatureMethod - SimpleList - Simpson - Sitka - Sitka89 - Situp - Skewed - Skin - Skye - Sl.initial.repara - Sl.repara - Sl.setup - Slc - Smokyph - Snore - Snow - Soccer - Social - SolexaQuality - Sophomor - South - Soybean - Spatial - SpatialFiltering - SpatialGrid - SpatialGridDataFrame - SpatialLines - SpatialLinesDataFrame - SpatialLinesLengths - SpatialMultiPoints - SpatialMultiPointsDataFrame - SpatialPixels - SpatialPixelsDataFrame - SpatialPoints - SpatialPointsDataFrame - SpatialPolygons - SpatialPolygonsDataFrame - SpatialPolygonsRescale - Speed - Spellers - Spelling - SplashDams - SplitDataFrameList - Sports - Spouse - Spruce - Stable - Stacked - Stamp - Stangle - Stat - StatBin - StatBin2d - StatBindot - StatBinhex - StatBoxplot - StatContour - StatCount - StatDensity - StatDensity2d - StatEcdf - StatEllipse - StatFunction - StatIdentity - StatQq - StatQuantile - StatSmooth - StatSum - StatSummary - StatSummary2d - StatSummaryBin - StatSummaryHex - StatUnique - StatYdensity - Statclas - Statelaw - Statisti - Step - Strauss - Stress - StructTS - Study - Submarin - Subway - SummarizedExperiment - Summary - Summary.Date - Summary.POSIXct - Summary.POSIXlt - Summary.data.frame - Summary.difftime - Summary.factor - Summary.numeric_version - Summary.ordered - Sunspot - Superbowl - Supercar - Surv - Sweave - Sweave2knitr - SweaveHooks - SweaveSyntConv - SweaveSyntaxLatex - SweaveSyntaxNoweb - SweaveTeXFilter - SymbolFilter - Synonym - Sys.Date - Sys.chmod - Sys.getenv - Sys.getlocale - Sys.getpid - Sys.glob - Sys.info - Sys.localeconv - Sys.readlink - Sys.setFileTime - Sys.setenv - Sys.setlocale - Sys.sleep - Sys.time - Sys.timezone - Sys.umask - Sys.unsetenv - Sys.which - Szero - T - T2graph - TGTable3 - TGTable5 - Tablrock - Teacher - Tenness - Tensile - Term - Test1 - Tetracycline1 - Tetracycline2 - Theoph - Thermal - Tiaa - Ticket - Titanic - Toaster - Token - Token1.0 - Token2.0 - TokenServiceAccount - Tonsils - ToothGrowth - TopoS - Tort - Toxic - Track - Track15 - Traffic - Treatments - Trees - Trucks - TukeyHSD - Tv - Tweedie - Twin - TxBiotypeFilter - TxEndFilter - TxIdFilter - TxNameFilter - TxStartFilter - Type1Font - UCBAdmissions - UKDriverDeaths - UKgas - UQ - UQE - UQS - URLdecode - URLencode - USAccDeaths - USAge.df - USAge.table - USArrests - USCancerRates - USCounties - USJudgeRatings - USMortality - USPersonalExpenditure - USRegionalMortality - USSouthPolygon - UScereal - UScitiesD - UScrime - Undergrad - UniprotFilter - 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`.__T__Rattribnames:AnnotationDbi` - `.__T__Rattribnames<-:AnnotationDbi` - `.__T__Reduce:BiocGenerics` - `.__T__Rkeyname:AnnotationDbi` - `.__T__Rkeys:AnnotationDbi` - `.__T__Rkeys<-:AnnotationDbi` - `.__T__Rle:S4Vectors` - `.__T__Rlength:AnnotationDbi` - `.__T__SQLKeywords:DBI` - `.__T__Schur:Matrix` - `.__T__Secondary:AnnotationDbi` - `.__T__SummarizedExperiment:SummarizedExperiment` - `.__T__Summary:base` - `.__T__Synonym:AnnotationDbi` - `.__T__Term:AnnotationDbi` - `.__T__Views:IRanges` - `.__T__[:base` - `.__T__[<-:base` - `.__T__[[:base` - `.__T__[[<-:base` - `.__T__^:base` - `.__T__abstract:Biobase` - `.__T__acbind:DelayedArray` - `.__T__acc:graph` - `.__T__accessions:ProtGenerics` - `.__T__active:S4Vectors` - `.__T__active<-:S4Vectors` - `.__T__addAttrToGeom:sp` - `.__T__addAttributes:XML` - `.__T__addEdge:graph` - `.__T__addNextMethod:methods` - `.__T__addNode:graph` - `.__T__adj:graph` - `.__T__adjacencyMatrix:graph` - `.__T__aggenv:Biobase` - `.__T__aggfun:Biobase` - `.__T__aggregate:stats` - 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`.__T__featureData:Biobase` - `.__T__featureData<-:Biobase` - `.__T__featureNames:Biobase` - `.__T__featureNames<-:Biobase` - `.__T__fetch:DBI` - `.__T__field:AnnotationFilter` - `.__T__fileName:BiocGenerics` - `.__T__filterRules:S4Vectors` - `.__T__findMatches:S4Vectors` - `.__T__findOverlaps:IRanges` - `.__T__findPalindromes:Biostrings` - `.__T__findRange:IRanges` - `.__T__findRun:S4Vectors` - `.__T__first:S4Vectors` - `.__T__first<-:S4Vectors` - `.__T__flank:IRanges` - `.__T__follow:IRanges` - `.__T__forceSymmetric:Matrix` - `.__T__formals<-:base` - `.__T__format:base` - `.__T__free:XML` - `.__T__from:S4Vectors` - `.__T__fromGXL:graph` - `.__T__fullgrid:sp` - `.__T__fullgrid<-:sp` - `.__T__fvarLabels:Biobase` - `.__T__fvarLabels<-:Biobase` - `.__T__fvarMetadata:Biobase` - `.__T__fvarMetadata<-:Biobase` - `.__T__gaps:IRanges` - `.__T__genome:GenomeInfoDb` - `.__T__genome<-:GenomeInfoDb` - `.__T__geometry:sp` - `.__T__geometry<-:sp` - `.__T__get:BiocGenerics` - `.__T__getBimapFilters:AnnotationDbi` - 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`.__T__keys<-:AnnotationDbi` - `.__T__keytypes:AnnotationDbi` - `.__T__kronecker:base` - `.__T__lapply:BiocGenerics` - `.__T__lcprefix:Biostrings` - `.__T__lcsubstr:Biostrings` - `.__T__lcsuffix:Biostrings` - `.__T__leaves:graph` - `.__T__length:base` - `.__T__length<-:base` - `.__T__lengths:BiocGenerics` - `.__T__letter:Biostrings` - `.__T__letterFrequency:Biostrings` - `.__T__letterFrequencyInSlidingView:Biostrings` - `.__T__levels:base` - `.__T__levels<-:base` - `.__T__links:AnnotationDbi` - `.__T__loadMethod:methods` - `.__T__locked:Biobase` - `.__T__logLik:stats` - `.__T__logicOp:AnnotationFilter` - `.__T__low2high:IRanges` - `.__T__ls:base` - `.__T__lu:Matrix` - `.__T__mad:BiocGenerics` - `.__T__make.db.names:DBI` - `.__T__makeDataPackage:Biobase` - `.__T__mapIds:AnnotationDbi` - `.__T__mapOrder:IRanges` - `.__T__mappedLkeys:AnnotationDbi` - `.__T__mappedRkeys:AnnotationDbi` - `.__T__mappedkeys:AnnotationDbi` - `.__T__mapply:BiocGenerics` - `.__T__maskGaps:Biostrings` - `.__T__maskMotif:Biostrings` - 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`.__T__minWeights:Biostrings` - `.__T__mismatch:Biostrings` - `.__T__mismatchSummary:Biostrings` - `.__T__mismatchTable:Biostrings` - `.__T__modifications:ProtGenerics` - `.__T__mstack:IRanges` - `.__T__mz:ProtGenerics` - `.__T__mz<-:ProtGenerics` - `.__T__nLnode:S4Vectors` - `.__T__nRnode:S4Vectors` - `.__T__na.exclude:stats` - `.__T__na.omit:stats` - `.__T__names:base` - `.__T__names<-:base` - `.__T__narrow:IRanges` - `.__T__nchar:base` - `.__T__ncol:base` - `.__T__nearest:IRanges` - `.__T__nedit:Biostrings` - `.__T__neditEndingAt:Biostrings` - `.__T__neditStartingAt:Biostrings` - `.__T__needwunsQS:Biostrings` - `.__T__nhit:AnnotationDbi` - `.__T__nindel:Biostrings` - `.__T__nir_list:IRanges` - `.__T__nmatch:Biostrings` - `.__T__nmismatch:Biostrings` - `.__T__nnode:S4Vectors` - `.__T__nnodes:Biostrings` - `.__T__nnzero:Matrix` - `.__T__nobj:IRanges` - `.__T__nobs:stats` - `.__T__nodeData:graph` - `.__T__nodeData<-:graph` - `.__T__nodeDataDefaults:graph` - `.__T__nodeDataDefaults<-:graph` - 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`.__T__type:DelayedArray` - `.__T__ugraph:graph` - `.__T__unaligned:Biostrings` - `.__T__union:BiocGenerics` - `.__T__unique:BiocGenerics` - `.__T__uniqueLetters:Biostrings` - `.__T__universe:IRanges` - `.__T__universe<-:IRanges` - `.__T__unlist:base` - `.__T__unmasked:Biostrings` - `.__T__unname:base` - `.__T__unpack:Matrix` - `.__T__unsplit:BiocGenerics` - `.__T__unstrsplit:S4Vectors` - `.__T__update:stats` - `.__T__updateGraph:graph` - `.__T__updateObject:BiocGenerics` - `.__T__updateObjectTo:Biobase` - `.__T__updown:Matrix` - `.__T__validateGXL:graph` - `.__T__value:AnnotationFilter` - `.__T__values:S4Vectors` - `.__T__values<-:S4Vectors` - `.__T__var:BiocGenerics` - `.__T__varLabels:Biobase` - `.__T__varLabels<-:Biobase` - `.__T__varMetadata:Biobase` - `.__T__varMetadata<-:Biobase` - `.__T__vcountPDict:Biostrings` - `.__T__vcountPattern:Biostrings` - `.__T__vcov:stats` - `.__T__viewApply:IRanges` - `.__T__viewMaxs:IRanges` - `.__T__viewMeans:IRanges` - `.__T__viewMins:IRanges` - `.__T__viewRangeMaxs:IRanges` - `.__T__viewRangeMins:IRanges` - `.__T__viewSums:IRanges` - `.__T__viewWhichMaxs:IRanges` - `.__T__viewWhichMins:IRanges` - `.__T__vmatchPDict:Biostrings` - `.__T__vmatchPattern:Biostrings` - `.__T__vmembers:IRanges` - `.__T__vwhichPDict:Biostrings` - `.__T__weights:stats` - `.__T__which.isMatchingEndingAt:Biostrings` - `.__T__which.isMatchingStartingAt:Biostrings` - `.__T__which.max:BiocGenerics` - `.__T__which.min:BiocGenerics` - `.__T__which:BiocGenerics` - `.__T__which:base` - `.__T__whichFirstNotNormal:IRanges` - `.__T__whichPDict:Biostrings` - `.__T__width0:Biostrings` - `.__T__width:BiocGenerics` - `.__T__width<-:BiocGenerics` - `.__T__window:stats` - `.__T__window<-:stats` - `.__T__with:base` - `.__T__within:base` - `.__T__write.exprs:Biobase` - `.__T__writeMM:Matrix` - `.__T__writeMSData:ProtGenerics` - `.__T__write_block_to_sink:DelayedArray` - `.__T__xmlAttrs<-:XML` - `.__T__xmlChildren<-:XML` - `.__T__xmlClone:XML` - `.__T__xmlNamespace<-:XML` - `.__T__xmlNamespaces<-:XML` - `.__T__xmlParent:XML` - `.__T__xmlSource:XML` - `.__T__xmlSourceFunctions:XML` - `.__T__xmlSourceSection:XML` - `.__T__xmlToDataFrame:XML` - `.__T__xmlToS4:XML` - `.__T__xmlValue<-:XML` - `.__T__xtabs:BiocGenerics` - `.__T__xtfrm:base` - `.__T__xvcopy:XVector` - `.__T__zapsmall:base` - `.__T__zipdown:S4Vectors` - `.__T__zipup:S4Vectors` - `.__T__|:base` - `/.difftime` - `/` - `:::` - `::` - `:=` - `:` - `<-` - `<<-` - `<=` - `<` - `==.bit` - `==.bitwhich` - `==` - `=` - `>=` - `>` - `?` - `@<-` - `@` - `Encoding<-` - `Lkeys<-` - `Names<-` - `Rattribnames<-` - `Rkeys<-` - `S3Class<-` - `S3Part<-` - `[.AsIs` - `[.Date` - `[.Dlist` - `[.POSIXct` - `[.POSIXlt` - `[.bit` - `[.cluster` - `[.data.frame` - `[.difftime` - `[.factor` - `[.hexmode` - `[.listof` - `[.noquote` - `[.numeric_version` - `[.octmode` - `[.simple.list` - `[.table` - `[.tile.list` - `[.triang.list` - `[.warnings` - `[<-.Date` - `[<-.POSIXct` - `[<-.POSIXlt` - `[<-.bit` - `[<-.data.frame` - `[<-.factor` - `[<-.numeric_version` - 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`end<-` - `environment<-` - `experimentData<-` - `exprs<-` - `fData<-` - `f_env<-` - `f_lhs<-` - `f_rhs<-` - `featureData<-` - `featureNames<-` - `first<-` - `fn_body<-` - `fn_env<-` - `fn_fmls<-` - `fn_fmls_names<-` - `formals<-` - `fullgrid<-` - `functionBody<-` - `fvarLabels<-` - `fvarMetadata<-` - `genome<-` - `geometry<-` - `graphRenderInfo<-` - `gridded<-` - `htmlDependencies<-` - `is.na<-.default` - `is.na<-.factor` - `is.na<-.numeric_version` - `is.na<-` - `is.sorted<-` - `isCircular<-` - `key<-` - `keys<-` - `label<-` - `languageEl<-` - `last<-` - `length<-.bit` - `length<-.bitwhich` - `length<-.factor` - `length<-` - `levels<-.factor` - `levels<-` - `lowerTriangle<-` - `mapLevels<-` - `masks<-` - `matrix<-` - `mcols<-` - `metadata<-` - `mgEdgeData<-` - `mgEdgeDataDefaults<-` - `mode<-` - `mostattributes<-` - `mz<-` - `na.count<-` - `names<-.POSIXlt` - `names<-` - `nodeData<-` - `nodeDataDefaults<-` - `nodeRenderInfo<-` - `nodes<-` - `notes<-` - `nties<-` - `nunique<-` - `oldClass<-` - `on_failure<-` - `organism<-` - `pData<-` - `packageSlot<-` - `parRenderInfo<-` - `parent.env<-` - `phenoData<-` - `physical<-.default` - `physical<-` - `polygons<-` - `preproc<-` - `proj4string<-` - `protocolData<-` - `pubMedIds<-` - `ranges<-` - `regmatches<-` - `removeAttrDataItem<-` - `repfromto<-` - `row.names<-.data.frame` - `row.names<-.default` - `row.names<-` - `rowData<-` - `rowRanges<-` - `rowmask<-` - `rownames<-` - `runLength<-` - `runValue<-` - `sampleNames<-` - `score<-` - `sdiag<-` - `se.exprs<-` - `second<-` - `seqinfo<-` - `seqlengths<-` - `seqlevels<-` - `seqlevelsStyle<-` - `seqnames<-` - `seqtype<-` - `sizeFactors<-` - `slot<-` - `snpCall<-` - `snpCallProbability<-` - `spChFIDs<-` - `species<-` - `split<-.data.frame` - `split<-.default` - `split<-` - `start<-` - `storage.mode<-` - `storageMode<-` - `str_sub<-` - `strand<-` - `stri_datetime_add<-` - `stri_sub<-` - `stri_subset<-` - `stri_subset_charclass<-` - `stri_subset_coll<-` - `stri_subset_fixed<-` - `stri_subset_regex<-` - `subseq<-` - `substr<-` - `substring<-` - `tclObj<-.tclVar` - `tclObj<-` - `tclvalue<-.default` - `tclvalue<-.tclVar` - `tclvalue<-` - `tktitle<-` - `tsp<-` - `units<-.difftime` - `units<-` - `universe<-` - `upperTriangle<-` - `values<-` - `varLabels<-` - `varMetadata<-` - `varnames<-` - `virtual<-.default` - `virtual<-` - `width<-` - `window<-.Vector` - `window<-.factor` - `window<-.vector` - `window<-` - `xmlAttrs<-` - `xmlChildren<-` - `xmlName<-` - `xmlNamespace<-` - `xmlNamespaces<-` - `xmlParent<-` - `xmlValue<-` - `{` - `|.bit` - `|.bitwhich` - `|.hexmode` - `|.octmode` - `|` - `||` - `~` - a - aM2bpG - a_ply - aaMap - aaply - aareg - abIseq - abIseq1 - abbey - abbreviate - abc.ci - ability.cov - abline - abort - abs - abs_area - absolute.size - absoluteRanges - abstract - acast - acbind - acc - accdeaths - accept - accept_json - accept_xml - accessions - ace - acepack - acf - acf2AR - acfplot - achievement - acme - acos - acosh - active - actuals - acw - add - add.scope - add1 - addAttrToGeom - addAttributes - addChildren - addClusterOptions - addEdge - addGrob - addLast - addNA - addNextMethod - addNode - addSibling - addTaskCallback - addTclPath - addVigs2WinMenu - add_case - add_column - add_datalist - add_headers - add_margins - add_ref_boxes - add_ref_lines - add_row - addmargins - address - addterm - adist - adj - adjacencyMatrix - adjustcolor - adply - aeqSurv - aes - aes_ - aes_all - aes_auto - aes_cbc_decrypt - aes_cbc_encrypt - aes_ctr_decrypt - aes_ctr_encrypt - aes_gcm_decrypt - aes_gcm_encrypt - aes_keygen - aes_q - aes_string - afcon - agexact.fit - aggenv - aggfun - aggregate - aggregate.Vector - aggregate.data.frame - aggregate.nb - aggregate.ts - aggregating_zones - agnes - agreg.fit - agrep - agrepl - agricolae - agriculture - aids - aircondit - aircondit7 - airdist - airmiles - airquality - alarm - alaska - alias - align - aligned - alist - all - all.bit - all.bitwhich - all.equal - all.equal.POSIXt - all.equal.character - all.equal.default - 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as.data.frame.ExpressionSet - as.data.frame.POSIXct - as.data.frame.POSIXlt - as.data.frame.Vector - as.data.frame.array - as.data.frame.character - as.data.frame.complex - as.data.frame.data.frame - as.data.frame.default - as.data.frame.difftime - as.data.frame.factor - as.data.frame.integer - as.data.frame.list - as.data.frame.localmoranex - as.data.frame.localmoransad - as.data.frame.logical - as.data.frame.matrix - as.data.frame.model.matrix - as.data.frame.noquote - as.data.frame.numeric - as.data.frame.numeric_version - as.data.frame.ordered - as.data.frame.raw - as.data.frame.table - as.data.frame.ts - as.data.frame.vector - as.data.table - as.dendrogram - as.difftime - as.dist - as.document_position - as.document_range - as.double - as.double.DMS - as.double.POSIXlt - as.double.bit - as.double.bitwhich - as.double.difftime - as.double.ri - as.env - as.environment - as.expression - as.expression.default - as.factor - as.factorOrShingle - as.formula - as.fractions - as.function - 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as_name - as_native_character - as_native_string - as_overscope - as_pairlist - as_quosure - as_quosureish - as_string - as_tibble - as_utf8 - as_utf8_character - as_utf8_string - asc - ascentDetails - asin - asinh - asis_output - ask - askForPassword - askpass - asn_trans - aspell - aspell_package_C_files - aspell_package_R_files - aspell_package_Rd_files - aspell_package_vignettes - aspell_write_personal_dictionary_file - assay - assayData - assayDataElement - assayDataElementNames - assayDataElementReplace - assayDataNew - assayDataValidMembers - assayNames - assays - assert - assertCondition - assertError - assertWarning - assert_that - assertthat - assign - assignClassDef - assignEdgewise - assignInMyNamespace - assignInNamespace - assignMethodsMetaData - assocplot - ast - ast_ - atan - atan2 - atanh - atanh_trans - attach - attachDependencies - attachNamespace - attenu - attitude - attr - attr.all.equal - attrDataItem - attrDefaults - attrassign - attributePages - attributes - auckland - audpc - audps - augPred - australia_PISA2012 - austres - authenticate - auto_name - autocorr - autocorr.diag - autocorr.plot - autocov_dist - autoformat - autoload - autoloader - autoplot - available.packages - available.species - avas - ave - aveNumEdges - axTicks - axis - axis.Date - axis.POSIXct - axis.default - axis.grid - axisTicks - b.scal - backSpline - backports - backsolve - backtick - bacteria - balance - balanceMethodsList - balancedGrouped - balloonplot - baltimore - bam - bam.update - band - bandSparse - bandchol - bandplot - bandwidth.kernel - bandwidth.nrd - banking - bannerplot - bar.err - bar.group - barchart - barley - barplot - barplot.default - barplot2 - bartlett.test - base - base64 - base64Decode - base64Encode - base64_dec - base64_decode - base64_enc - base64_encode - base64decode - base64enc - base64encode - base_env - baseball - baseball.1964 - baseenv - basehaz - basename - basicHeaderGatherer - basicTextGatherer - batchSE - batchSOM - bayes.influence - bayes.model.selection - bayes.probit - bayesresiduals - bbatch - bbexpand - bbox - bclust - bcv - bdf - bdiag - beav1 - beav2 - beaver - benchB3 - benchplot - bermuda.grass - besselI - besselJ - besselK - besselY - best.nnet - best.randomForest - best.rpart - best.svm - best.tune - beta - beta.select - betabinexch - betabinexch0 - betar - betascale - between - bezierGrob - bezierPoints - bfexch - bfindep - bgBlack - bgBlue - bgCyan - bgGreen - bgMagenta - bgRed - bgWhite - bgYellow - bibentry - bibstyle - bigcity - bignum - bignum_mod_exp - bignum_mod_inv - binCounts - binMeans - binaryBuffer - bincombinations - bindAsGRanges - bindData - bindingIsActive - bindingIsLocked - bindr - bindtextdomain - binnedAverage - binom.test - binomial - binomial.beta.mix - binsearch - binsrtR - biocAccess - biocLite - biocRepos - biocUpdatePackages - biocValid - biocVersion - biocases_group - biocinstallRepos - biomaRt - biopsy - biplot - birdextinct - birthweight - birthwt - bit - bitAnd - bitFlip - bitOr - bitShiftL - bitShiftR - bitXor - bit_done - bit_init - bitmap - bitops - bitwAnd - bitwNot - bitwOr - bitwShiftL - bitwShiftR - bitwXor - bitwhich - bkde - bkde2D - bkfe - black - bladder - blake2b - blake2s - blinreg - blinregexpected - blinregpred - blob - blue - bluered - blues9 - blurred - bmp - body - bold - boot - boot.array - boot.ci - bootstrap.lca - borders - boundary - box - boxcox - boxcox_trans - boxplot - boxplot.default - boxplot.matrix - boxplot.n - boxplot.stats - boxplot2 - boxx - bprobit.probs - bptest.sarlm - bpy.colors - bquote - br - bradley.terry.post - brambles - break - breakInChunks - breakTies - breastcancer - breslow - brew_colors - brewer.pal - brewer.pal.info - brewer_pal - broomify - browsable - browseEnv - browseURL - browseVignettes - browser - browserCondition - browserSetDebug - browserText - bs - bsgenomeName - bubble - bug.report - bugs2jags - buildRepDepGraph - buildVignette - buildVignettes - build_url - builtins - bw.SJ - bw.bcv - bw.nrd - bw.nrd0 - bw.ucv - bwplot - bxp - by - by.data.frame - by.default - bytes - bytes_along - bytes_len - bzfile - c - c.Date - c.POSIXct - c.POSIXlt - c.bit - c.bitwhich - c.difftime - c.noquote - c.numeric_version - c.sparseVector - c.warnings - cBind - cSplineDes - cSplit - cSplit_e - cSplit_f - cSplit_l - caTools - ca_bundle - cabbages - cache - cacheGenericsMetaData - cacheMetaData - cacheMethod - cache_filesystem - cache_info - cache_memory - cache_s3 - cairo_pdf - cairo_ps - caith - calc.trans - calcProb - calcStringMetric - calcSumProb - calc_element - calcium - calculus.grades - call - call2 - callCC - callFun - callGeneric - callNextMethod - call_args - call_args_names - call_depth - call_fn - call_frame - call_inspect - call_modify - call_name - call_new - call_stack - call_standardise - caller_env - caller_fn - caller_frame - can.be.simmed - canCoerce - cancer - cancermortality - cancor - cane - canonical.theme - capabilities - capability - caption - capture - capture.output - car.test.frame - car90 - card - careertraj.setup - carolina - cars - case - case.names - casefold - cat - cat_boxx - cat_bullet - cat_line - cat_print - cat_rule - catalogAdd - catalogClearTable - catalogDump - catalogLoad - catalogResolve - catch_cnd - catcolwise - cats - catsM - cauchyerrorpost - cav - cbind - cbind.DataFrame - cbind.Spatial - cbind.data.frame - cbind2 - cbindX - cbreaks - ccf - cch - cd4 - cd4.nested - cdplot - ceiling - cell2nb - cement - censboot - censor - centerText - centerlines - centers.bclust - cert_verify - cgd - chanames - changedFiles - channel - channelNames - channing - char.expand - char2dms - charToRaw - character - charmatch - charset_to_Unicode - chartr - cheb_setup - check.options - checkAtAssignment - checkCRAN - checkCluster - checkConstraint - checkDocFiles - checkDocStyle - checkFF - checkForRemoteErrors - checkMAPCOUNTS - checkMD5sums - checkNEWS - checkPoFile - checkPoFiles - checkRVersion - checkRd - checkRdaFiles - checkReplaceFuns - checkS3methods - checkSlotAssignment - checkTnF - checkUTF8 - checkUsage - checkUsageEnv - checkUsagePackage - checkVignettes - check_mnsl - check_packages_in_dir - check_packages_in_dir_changes - check_packages_in_dir_details - check_tzones - chem - chemotherapy - chgroup - chickwts - childNames - child_env - chisq.test - chkDots - chkIDs - chmatch - chol - chol.default - chol2inv - choose - chooseBioCmirror - chooseCRANmirror - chooseCentralOrgPkgSymbol - choose_palette - chorSub - chorder - choynowski - chr - chr_along - chr_encoding - chr_len - chr_unserialise_unicode - chroma_slice - chromatogram - chromatograms - chull - chunk - chunk.default - chunkToLineReader - chunk_dim - ci - ci.binom - ci2d - cipoisson - circleGrob - citEntry - citFooter - citHeader - citation - cite - citeNatbib - city - cividis - cksum - clara - claridge - class - class.ind - classAgreement - classLabel - classMetaName - className - classNameForDisplay - classVersion - classesToAM - classscatter - clay - clean_cache - clearNode - clearPushBack - cli - clip - clipGrob - clogit - clone - clone.default - clone.list - close - close.connection - close.screen - close.socket - close.srcfile - close.srcfilealias - closeAllConnections - closeNode - closeNode.NWSnode - closeNode.SOCKnode - closeNode.default - cloth - cloud - clusGap - clusplot - cluster - clusterApply - clusterApplyLB - clusterCall - clusterEvalQ - clusterExport - clusterMap - clusterSetRNGStream - clusterSetupRNG - clusterSetupRNGstream - clusterSetupSPRNG - clusterSplit - clusteringCoefficient - clusters.bclust - cm - cm.colors - cmdscale - cmeans - cmpfile - cmpfun - cnd - cnd_abort - cnd_error - cnd_inform - cnd_message - cnd_signal - cnd_warn - cnd_warning - co.intervals - co.transfer - co2 - coal - coda - coda.options - codamenu - code - codetools - codoc - codocClasses - codocData - codons - coef - coef.gmsar - coef.hclust - coef.sarlm - coef.spautolm - coef.stsls - coefFrame - coefHier - coefficients - coerce - coerce_class - coerce_lang - coerce_type - coffee_data - col - col.whitebg - col2hcl - col2hex - col2rgb - colAUC - colAlls - colAnyMissings - colAnyNAs - colAnys - colAvgsPerRowSet - colCollapse - colCounts - colCummaxs - colCummins - colCumprods - colCumsums - colData - colDiffs - colIQRDiffs - colIQRs - colLogSumExps - colMadDiffs - colMads - colMaxs - colMeans - colMeans2 - colMedians - colMins - colOrderStats - colProds - colQuantiles - colRanges - colRanks - colSdDiffs - colSds - colSums - colSums2 - colTabulates - colVarDiffs - colVars - colWeightedMads - colWeightedMeans - colWeightedMedians - colWeightedSds - colWeightedVars - col_align - col_bin - col_factor - col_nchar - col_numeric - col_quantile - col_strsplit - col_substr - col_substring - coll - collapse - collectLocals - collectUsage - colmask - colmetanames - colnames - colon - colonnade - colorConverter - colorRamp - colorRampPalette - colorpanel - colors - colorschemes - colorspace - colorspaces - colour_ramp - colours - colsplit - columb - columb.polys - columbus - columnMetadata - column_to_rownames - columns - colwise - combinat - combinations - combine - combineLimits - combineNodes - combine_styles - combine_vars - combine_words - combn - combn2 - combs - comma - comma_format - commandArgs - comment - comment.SAX - commonName - common_env - compact - compactPDF - compareFits - compareMatchedClasses - comparePred - compareStrings - compareVersion - compareXMLDocs - compassRose - compile - compileAttributes - compilePKGS - compiler - complement - complement.nb - complement_slice - complete - complete.cases - completeClassDefinition - completeExtends - completeSubclasses - complex - computeAllFlinks - computeRestarts - con2tr - concat.split - concat.split.compact - concat.split.expanded - concat.split.list - concat.split.multiple - concatHtmlTables - concurvity - cond.index - condense - condest - condition - conditionCall - conditionCall.condition - conditionMessage - conditionMessage.condition - conditions - config - confint - confint.default - confint.lm - conflicts - conformMethod - congruent - connComp - consensus - consensusMatrix - consensusString - consensusViews - console_width - constantFold - constrOptim - content - content_type - content_type_json - content_type_xml - contents - contig - contigs - continuous_scale - contour - contour.default - contourLines - contourplot - contr.SAS - contr.helmert - contr.poly - contr.sdif - contr.sum - contr.treatment - contrasts - contrib.url - contributors - control - convertColor - convertFilter - convertHeight - convertNative - convertUnit - convertWidth - convertX - convertY - convolve - cookies - cooks.distance - coop - coord_cartesian - coord_equal - coord_fixed - coord_flip - coord_map - coord_munch - coord_polar - coord_quickmap - coord_trans - coordinates - coordinatevalues - coordnames - coords - cophenetic - coplot - copy - copyDependencyToDir - copyEnv - copySubstitute - cor - cor.test - corAR1 - corARMA - corCAR1 - corCompSymm - corExp - corFactor - corGaus - corIdent - corLin - corMatrix - corNatural - corRatio - corSpatial - corSpher - corSymm - corclust - corn - corr - correl - correlation - correlogram - corresp - cos - cosh - cospi - cotton - count - count.fields - count.links - count.mappedLkeys - count.mappedRkeys - count.mappedkeys - countLnodeHits - countMatches - countOverlaps - countPDict - countPWM - countPattern - countQueryHits - countRnodeHits - countSubjectHits - countpattern - countries - counts - cov - cov.mcd - cov.mve - cov.rob - cov.trob - cov.wt - cov2cor - coverage - covratio - cox.ph - cox.zph - coxph - coxph.control - coxph.detail - coxph.fit - coxph.wtest - cpgram - cpl - cpl_along - cpl_len - cppFunction - cpp_object_dummy - cpp_object_initializer - cpus - crabs - crayon - create.post - createAnnObjs.SchemaChoice - createPackage - createProjectTemplate - createSimpleBimap - createWidget - create_WX - create_env - create_progress_bar - create_traceback - crimtab - crosscorr - crosscorr.plot - crossprod - cscale - cshell - css - ctable - ctxt_depth - ctxt_frame - ctxt_stack - cu.summary - cum3 - cummax - cummin - cumprod - cumsum - cumsumexact - cumuplot - curl - curlError - curlEscape - curlGetHeaders - curlGlobalInit - curlMultiPerform - curlOptions - curlPercentEncode - curlPerform - curlSetOpt - curlUnescape - curlVersion - curl_docs - curl_download - curl_echo - curl_escape - curl_fetch_disk - curl_fetch_memory - curl_fetch_multi - curl_fetch_stream - curl_options - curl_symbols - curl_unescape - curl_version - current.column - current.panel.limits - current.parent - current.rotation - current.row - current.transform - current.viewport - current.vpPath - current.vpTree - current_frame - current_input - curve - curveGrob - custom.theme - custom.theme.2 - cut - cut.Date - cut.POSIXt - cut.default - cut_interval - cut_number - cut_width - cutree - cv.glm - cv.model - cv.similarity - cyan - cycle - cycle_hire - cycle_hire_osm - d2sigmoid - dDeta - dQuote - d_ply - daisy - dalton - daply - darker - darwin - data - data.class - data.entry - data.frame - data.matrix - data.restore - data.table - dataURI - dataViewport - data_frame - data_frame_ - database - dataentry - datasets - datasetsDb - date - date_breaks - date_format - date_trans - dbBegin - dbBeginTransaction - dbBind - dbBreak - dbBuildTableDefinition - dbCallProc - dbClearResult - dbColumnInfo - dbCommit - dbConnect - dbDataType - dbDisconnect - dbDriver - dbExecute - dbExistsTable - dbFetch - dbFileConnect - dbFileDisconnect - dbGetDBIVersion - dbGetException - dbGetInfo - dbGetPreparedQuery - dbGetQuery - dbGetRowCount - dbGetRowsAffected - dbGetStatement - dbGetTable - dbHasCompleted - dbInfo - dbIsValid - dbListConnections - dbListFields - dbListResults - dbListTables - dbQuoteIdentifier - dbQuoteString - dbReadTable - dbRemoveTable - dbRollback - dbSendPreparedQuery - dbSendQuery - dbSendStatement - dbSetDataMappings - dbUnloadDriver - dbWithTransaction - dbWriteTable - dbconn - dbeta - dbfile - dbinom - dbl - dbl_along - dbl_len - dbmeta - dbschema - dcast - dcast.data.table - dcauchy - dchisq - dd2dms - ddirichlet - ddiscrete - ddply - de - de.ncols - de.restore - de.setup - deaths - debug - debug.lr - debugGatherer - debugSQL - debug_fseq - debug_pipe - debugcall - debugger - debuggingState - debugonce - decode - decompose - decrypt_envelope - default.stringsAsFactors - defaultClusterOptions - defaultDumpName - defaultPrototype - defaults - defmacro - deframe - degAxis - degree - degreeLabelsEW - degreeLabelsNS - delayedAssign - deldir - delete.na - delete.response - deletion - delimMatch - deltat - demangle - demo - demo_spinners - dendrapply - dendrogramGrob - densCols - density - density.default - densityplot - densplot - denumerate - dep_auto - dep_prev - deparse - deparseLatex - dependsOnPkgs - depth - deriv - deriv3 - derive - desaturate - desc - descentDetails - describe - description - design - design.ab - design.alpha - design.bib - design.crd - design.cyclic - design.dau - design.graeco - design.lattice - design.lsd - design.rcbd - design.split - design.strip - design.youden - det - detach - detail - detectCores - determinant - determinant.matrix - dev.capabilities - dev.capture - dev.control - dev.copy - dev.copy2eps - dev.copy2pdf - dev.cur - dev.flush - dev.hold - dev.interactive - dev.list - dev.new - dev.next - dev.off - dev.prev - dev.print - dev.set - dev.size - dev2bitmap - devAskNewPage - deviance - deviance.gmsar - deviance.sarlm - deviance.spautolm - deviance.stsls - deviceIsInteractive - dexp - df - df.kernel - df.residual - df2sn - dfbeta - dfbetas - dffits - dgamma - dgebal - dgeom - dget - dhyper - diag - diag.panel.splom - diagN2U - diagU2N - diamonds - diana - dichromat - dichromat_pal - diff - diff.AtomicList - diff.Date - diff.POSIXt - diff.Rle - diff.default - diff.difftime - diff2 - diffinv - diffnb - diffograph - difftime - digamma - digest - digits - dim - dim.data.frame - dimLabels - dim_desc - dimensions - dimnames - dimnames.data.frame - dims - dinucleotideFrequency - dinucleotideFrequencyTest - dir - dir.create - dir.exists - direction - dirname - disaggregate - disassemble - discard - discint - discoveries - discrete.bayes - discrete.bayes.2 - discrete_scale - disease - disjoin - disjointBins - dispTable - display - display.brewer.all - display.brewer.pal - display.coda.options - dist - distance - distanceToNearest - distributeNegation - div - div_gradient_pal - divchain - divchain.default - divchain.deldir - diverge_hcl - diverge_hsv - divide_by - divide_by_int - dkernel - dlnorm - dlogis - dlply - dmnom - dmnorm - dmt - dmultinom - dnbinom - dnearneigh - dnorm - do.breaks - do.call - doPrimitiveMethod - doRenderTags - do_ldet - docName - docall - documentSave - documentSaveAll - document_position - document_range - dogs - dollar - dollar_format - donner - dontCheck - dose.p - dotchart - dotplot - dots_capture - dots_definitions - dots_list - dots_n - dots_splice - dots_values - double - doubleYScale - double_quote - downViewport - download.file - download.packages - download_ssl_cert - downs.bc - dpih - dpik - dpill - dpois - dput - draw.colorkey - draw.details - draw.key - drawDetails - drawLayer - draw_key_abline - draw_key_blank - draw_key_boxplot - draw_key_crossbar - draw_key_dotplot - draw_key_label - draw_key_path - draw_key_point - draw_key_pointrange - draw_key_polygon - draw_key_rect - draw_key_smooth - draw_key_text - draw_key_vline - draw_key_vpath - drawparti - drivers - drop - drop.levels - drop.scope - drop.terms - drop0 - drop1 - dropSeqlevels - drop_style - droplevels - droplevels.List - droplevels.Rle - droplevels.data.frame - droplevels.factor - droplinks - dropterm - dsa_keygen - dscale - dsigmoid - dsignrank - dsurvreg - dt - dtdElement - dtdElementValidEntry - dtdEntity - dtdIsAttribute - dtdValidElement - ducks - dummy.coef - dummy.coef.lm - dump - dump.frames - dumpGXL - dumpMethod - dumpMethods - dumpPackTxt - dumpts - duncan.test - dunif - dupCurlHandle - dup_axis - duplicate - duplicated - duplicated.DataTable - duplicated.GenomicRanges - duplicated.POSIXlt - duplicated.Vector - duplicated.XRawList - duplicated.array - duplicated.data.frame - duplicated.default - duplicated.matrix - duplicated.numeric_version - duplicated.warnings - duplicated2 - duplicatedEdges - duplicatedIntegerPairs - duplicatedIntegerQuads - duplicatedxy - durbin.test - dweibull - dwilcox - dyn.load - dyn.unload - dynCurlReader - dynGet - dynamicClusterApply - e.scal - e1071 - eWV - each - eagles - eapply - ec_dh - ec_keygen - ecdf - ecdfplot - economics - economics_long - edgeData - edgeDataDefaults - edgeL - edgeMatrix - edgeNames - edgeRenderInfo - edgeSetIntersect0 - edgeSetUnion0 - edgeSets - edgeWeights - edgemode - edges - edit - edit.nb - editDetails - editGrob - eff.aovlist - effectiveSize - effects - efficient.rounding - eigen - eigen_pre_setup - eigen_setup - eigenw - el - elNamed - elect80 - election - election.2008 - elem - element - elementMetadata - elementNROWS - elementType - element_blank - element_grob - element_line - element_rect - element_text - elev - ellipseGrob - ellipsoidPoints - ellipsoidhull - em - emacs - embed - embedFonts - empinf - empty - empty.dump - emptyMethodsList - empty_env - emptyenv - enableJIT - enc2native - enc2utf8 - encodeString - encoded_text_to_latex - encoding - encrypt_envelope - end - endElement.SAX - endIndex - endoapply - endsWith - enexpr - enexprs - enframe - engine.display.list - engine_output - enlist - enquo - enquos - enquote - ensureNamespace - ensym - ensyms - entityDeclaration.SAX - env - env.profile - env_bind - env_bind_exprs - env_bind_fns - env_bury - env_clone - env_depth - env_get - env_get_list - env_has - env_inherits - env_names - env_parent - env_parents - env_poke - env_poke_parent - env_tail - env_unbind - envelope - environment - environmentIsLocked - environmentName - environmental - epil - eqscplot - equal.count - equals - erase.screen - ergoStool - errorSubstitutionMatrices - error_cnd - errormatrix - errorsarlm - esApply - esetsFemale - esetsMale - esoph - estVar - estimable - estimateDispersions - estimateSizeFactors - ethanol - euro - eurodist - eval - eval.blockdesign - eval.design - eval.parent - eval.quoted - evalCpp - evalOnLoad - evalSeparately - evalSource - eval_bare - eval_tidy - eval_tidy_ - evalq - evalqOnLoad - evaluate - even - eweights - example - exclude.too.far - exists - existsFunction - existsMethod - exiting - exp - exp.tilt - expAtv - exp_trans - expand - expand.formula - expand.grid - expand.model.frame - expandRows - expand_limits - expand_range - expcov - expect_known_display - experimentData - expinfo - explode - expm - expm.Higham08 - expm1 - expmCond - expmFrechet - exportFASTA - exposeClass - expr - expr_deparse - expr_env - expr_find - expr_interp - expr_label - expr_name - expr_print - expr_text - expression - exprs - exprs_auto_name - extSoftVersion - extended - extended.figures - extended_breaks - extendrange - extends - externalRefMethod - extra_cols - extract - extract.lme.cov - extract.lme.cov2 - extract2 - extractAIC - extractAllMatches - extractAt - extractFromTo - extractGraphAM - extractGraphBAM - extractList - extractPath - extractPreserveChunks - extractROWS - extractSeqlevels - extractSeqlevelsByGroup - extract_raw_output - fData - f_capture - f_env - f_eval - f_eval_lhs - f_eval_rhs - f_interp - f_label - f_lhs - f_list - f_name - f_new - f_rhs - f_text - f_unwrap - fac2Sparse - fac2sparse - facet_grid - facet_null - facet_wrap - facmul - fact - factanal - factor - factor.scope - factorial - failwith - faithful - faithfuld - family - fanny - farms - fast.prcomp - fast.svd - fasta - fasta.index - fasta.seqlengths - fastq - fastq.geometry - fbeta - fclustIndex - fdHess - feature - featureData - featureNames - fetch - fetchExtendedChromInfoFromUCSC - fft - fgl - field - fifo - fig_chunk - fig_path - file - file.access - file.append - file.choose - file.copy - file.create - file.edit - file.exists - file.info - file.link - file.mode - file.mtime - file.path - file.remove - file.rename - file.show - file.size - file.symlink - fileName - fileSnapshot - fileUpload - file_ext - file_path_as_absolute - file_path_sans_ext - file_test - filled.contour - filter - filterOptions - filterRules - filterSeeds - filterType - finalDefaultMethod - find - find.package - findClass - findDependencies - findFun - findFuncLocals - findFunction - findGlobals - findHTMLlinks - findHTTPHeaderEncoding - findInterval - findLineNum - findLocals - findLocalsList - findMatches - findMethod - findMethodSignatures - findMethods - findOverlapPairs - findOverlaps - findPackageEnv - findPalindromes - findRange - findRecvOneTag - findRestart - findRun - findUnique - findXInclude - find_data - find_gs_cmd - find_panel - finegray - fingerprint - finish - fintersect - fir - first - fisher.test - fit.contrast - fitdistr - fitted - fitted.ME_res - fitted.SFResult - fitted.gmsar - fitted.sarlm - fitted.spautolm - fitted.values - fivenum - fix - fix.family.link - fix.family.ls - fix.family.qf - fix.family.rd - fix.family.var - fixDependence - fixInNamespace - fixPre1.8 - fix_mnsl - fixed - fixed.effects - fixef - flank - flatten - flattenAssignment - flattenPanel - flatten_chr - flatten_cpl - flatten_dbl - flatten_if - flatten_int - flatten_lgl - flatten_raw - flchain - flea - fligner.test - flipHorizontal - flipVertical - floor - flower - flush - flush.connection - flush.console - flush_console - fmtdate - fn_body - fn_env - fn_fmls - fn_fmls_names - fn_fmls_syms - fn_switch - fold - foldchange - foldchange2logratio - follow - footballscores - forbes - force - forceAndCall - forceGrob - forceSymmetric - foreign - forget - formXtViX - form_data - form_file - formalArgs - formals - format - format.AsIs - format.Date - format.POSIXct - format.POSIXlt - format.Surv - format.data.frame - format.default - format.difftime - format.factor - format.hexmode - format.info - format.libraryIQR - format.numeric_version - format.octmode - format.packageInfo - format.pval - format.summaryDefault - formatC - formatDL - formatOL - formatSpMatrix - formatSparseM - formatUL - format_format - formula - formula.gam - fortify - forwardsolve - fourfoldplot - foverlaps - fractions - frailty - frailty.gamma - frailty.gaussian - frailty.t - frame - frameApply - frameGrob - frame_data - frame_matrix - frame_position - frank - frankv - fread - freduce - free - freeny - french_fries - freq.array - frequency - frequency.polygon - frets - friedman - friedman.data - friedman.test - friendly_type - frijol - from - fromGXL - fromJSON - fruit - fs.boundary - fs.test - fsetdiff - fsetequal - fsort - ftM2adjM - ftM2graphNEL - ftM2int - ftable - ftpUpload - full.score - fullgrid - fullseq - functionBody - functionGrob - function_new - functions - funion - futile.options - fvarLabels - fvarMetadata - fwrite - gEdit - gEditList - gList - gPath - gTree - gabrielneigh - galaxies - gam - gam.check - gam.control - gam.fit - gam.fit3 - gam.fit5.post.proc - gam.outer - gam.reparam - gam.side - gam.vcomp - gam2derivative - gam2objective - gamSim - gamlss.etamu - gamlss.gH - gamm - gamma - gamma.dispersion - gamma.shape - gapply - gaps - gaucov - gaulss - gaussian - gc - gc.time - gcinfo - gctorture - gctorture2 - gdata - geary - geary.mc - geary.test - gehan - gelman.diag - gelman.plot - gen.factorial - gen.mixture - geneCov - geneCovariate - geneData - geneRangeMapper - genemark - generic.skeleton - genericSAXHandlers - genfan - genome - genomeBuilds - genomeStyles - genotype - genxenv - geom_abline - geom_area - geom_bar - geom_bin2d - geom_blank - geom_boxplot - geom_col - geom_contour - geom_count - geom_crossbar - geom_curve - geom_density - geom_density2d - geom_density_2d - geom_dotplot - geom_errorbar - geom_errorbarh - geom_freqpoly - geom_hex - geom_histogram - geom_hline - geom_jitter - geom_label - geom_label_repel - geom_line - geom_linerange - geom_map - geom_path - geom_point - geom_pointrange - geom_polygon - geom_qq - geom_quantile - geom_raster - geom_rect - geom_ribbon - geom_rug - geom_segment - geom_smooth - geom_spoke - geom_step - geom_text - geom_text_repel - geom_tile - geom_violin - geom_vline - geometry - get - get.ClusterOption - get.VerboseOption - get.ZeroPolicyOption - get.cnrind - get.coresOption - get.gpar - get.mcOption - get.spChkOption - get.var - get0 - getAccess - getActiveDocumentContext - getActiveProject - getAllConnections - getAllMethods - getAllSuperClasses - getAnywhere - getAssignedVar - getBM - getBMlist - getBibstyle - getBimapFilters - getBinaryURL - getBitIndicators - getCRANmirrors - getCall - getCallingDLL - getCallingDLLe - getChildrenStrings - getClass - getClassDef - getClassName - getClassPackage - getClasses - getClusterOption - getCol - getCompilerOption - getConnection - getConsoleEditorContext - getCovariate - getCovariateFormula - getCurlErrorClassNames - getCurlHandle - getCurlInfo - getCurlInfoConstants - getCurlMultiHandle - getCurlOptionTypes - getCurlOptionsConstants - getDLLRegisteredRoutines - getDLLRegisteredRoutines.DLLInfo - getDLLRegisteredRoutines.character - getDTthreads - getData - getDataPart - getDay - getDefaultNamespace - getDepList - getDependencies - getDependency - getElement - getEncoding - getExportedValue - getExtends - getForm - getFormParams - getFromNamespace - getFunction - getGOFrameData - getGene - getGeneric - getGenerics - getGeneticCode - getGraphicsEvent - getGraphicsEventEnv - getGridIndex - getGridTopology - getGrob - getGroup - getGroupMembers - getGroups - getGroupsFormula - getHTMLExternalFiles - getHTMLLinks - getHook - getHour - getInitial - getKEGGFrameData - getLDS - getLineNumber - getLinesIDSlot - getLinesLinesSlot - getListElement - getLoadActions - getLoadedDLLs - getMPIcluster - getMethod - getMethods - getMethodsForDispatch - getMethodsMetaData - getMin - getMonth - getNames - getNamespace - getNamespaceExports - getNamespaceImports - getNamespaceInfo - getNamespaceName - getNamespaceUsers - getNamespaceVersion - getNativeSymbolInfo - getNodeLocation - getNodePosition - getNodeSet - getNumericRounding - getObjectSlots - getOption - getOrgPkgForSchema - getPackageName - getParseData - getParseText - getPersistentValue - getPkgVigs - getPlot - getPolygonAreaSlot - getPolygonCoordsSlot - getPolygonHoleSlot - getPolygonLabptSlot - getPolygonsIDSlot - getPolygonsLabptSlot - getPolygonsPolygonsSlot - getPolygonsplotOrderSlot - getProperties - getPrototype - getRealizationBackend - getRefClass - getRelativeURL - getResponse - getResponseFormula - getRversion - getS3method - getSLLinesIDSlots - getSLlinesSlot - getSec - getSeq - getSequence - getSibling - getSlots - getSourceEditorContext - getSpPPolygonsIDSlots - getSpPPolygonsLabptSlots - getSpPnHoles - getSpPnParts - getSpPplotOrderSlot - getSpPpolygonsSlot - getSpatialLinesMidPoints - getSpatialPolygonsLabelPoints - getSrcDirectory - getSrcFilename - getSrcLines - getSrcLocation - getSrcref - getSubclasses - getTaskCallbackNames - getThemeInfo - getTkProgressBar - getTxtProgressBar - getURI - getURIAsynchronous - getURL - getURLAsynchronous - getURLContent - getValidity - getVarCov - getVersion - getVignetteInfo - getVirtual - getXIncludes - getXML - getXMLErrors - getYear - get_Polypath - get_PolypathRule - get_ReplCRS_warn - get_all_vars - get_callback - get_col_regions - get_config - get_env - get_expr - get_extent - get_ll_TOL - get_ll_warn - get_max_extent - get_seqtype_conversion_lookup - get_showHeadLines - get_showTailLines - get_spinner - getanID - geterrmessage - gettext - gettextf - getwd - gevlss - geweke.diag - geweke.plot - geyser - gffread - gg_dep - ggally_barDiag - ggally_blank - ggally_blankDiag - ggally_box - ggally_box_no_facet - ggally_cor - ggally_density - ggally_densityDiag - ggally_denstrip - ggally_diagAxis - ggally_dot - ggally_dot_and_box - ggally_dot_no_facet - ggally_facetbar - ggally_facetdensity - ggally_facetdensitystrip - ggally_facethist - ggally_na - ggally_naDiag - ggally_nostic_cooksd - ggally_nostic_hat - ggally_nostic_resid - ggally_nostic_se_fit - ggally_nostic_sigma - ggally_nostic_std_resid - ggally_points - ggally_ratio - ggally_smooth - ggally_smooth_lm - ggally_smooth_loess - ggally_text - ggcoef - ggcorr - ggduo - ggfacet - gglegend - ggmatrix - ggmatrix_gtable - ggnet - ggnet2 - ggnetworkmap - ggnostic - ggpairs - ggparcoord - ggplot - ggplot2 - ggplot2like - ggplot2like.opts - ggplotGrob - ggplot_build - ggplot_gtable - ggproto - ggproto_parent - ggrepel - ggsave - ggscatmat - ggsurv - ggtitle - ggts - gibbs - gilgais - ginv - gl - glayer - glayer_ - glh.test - glimpse - glm - glm.control - glm.convert - glm.diag - glm.diag.plots - glm.fit - glm.nb - glmmPQL - glob2rx - globalG.test - globalVariables - global_env - global_frame - globalenv - gls - glsApVar - glsControl - glsEstimate - glsStruct - glue - glue_data - glue_data_sql - glue_sql - glyphplot - glyphs - gmodels - gnls - gnlsControl - gnlsStruct - gnuplot - gpar - gplots - grDevices - grSoftVersion - grab_legend - gradient_n_pal - grain - granges - graph - graph.freq - graph.par - graph.par.get - graph2SparseM - graph2T - graph2nb - graphAM - graphBAM - graphExamples - graphIntersect - graphNEL - graphRenderInfo - graphUnion - graphics - graphics.off - grass - grav - gravity - gray - gray.colors - grconvertX - grconvertY - greedy.wilks - green - greenhouse - greenred - gregexpr - gregexpr2 - grep - grepRaw - grepl - grey - grey.colors - grey_pal - grglist - grid - grid.DLapply - grid.abline - grid.add - grid.arrange - grid.arrows - grid.bezier - grid.cap - grid.circle - grid.clip - grid.collection - grid.convert - grid.convertHeight - grid.convertWidth - grid.convertX - grid.convertY - grid.copy - grid.curve - grid.delay - grid.display.list - grid.draw - grid.edit - grid.ellipse - grid.force - grid.frame - grid.function - grid.gedit - grid.get - grid.gget - grid.grab - grid.grabExpr - grid.gremove - grid.grep - grid.grill - grid.grob - grid.layout - grid.legend - grid.line.to - grid.lines - grid.locator - grid.ls - grid.move.to - grid.multipanel - grid.newpage - grid.ngon - grid.null - grid.pack - grid.panel - grid.path - grid.place - grid.plot.and.legend - grid.points - grid.polygon - grid.polyline - grid.pretty - grid.raster - grid.record - grid.rect - grid.refresh - grid.remove - grid.reorder - grid.revert - grid.roundrect - grid.segments - grid.set - grid.show.layout - grid.show.viewport - grid.strip - grid.table - grid.text - grid.xaxis - grid.xspline - grid.yaxis - gridExtra - gridIndex2nb - gridat - gridded - gridlines - gridparameters - griffith_sone - grob - grobAscent - grobDescent - grobHeight - grobName - grobPathListing - grobTree - grobWidth - grobX - grobY - groupedData - groupeddatapost - grouping - grouplengths - grouprank - growth - gstsls - gsub - gsummary - gtable - gtable_add_col_space - gtable_add_cols - gtable_add_grob - gtable_add_padding - gtable_add_row_space - gtable_add_rows - gtable_cbind - gtable_col - gtable_col_spacer - gtable_combine - gtable_filter - gtable_height - gtable_matrix - gtable_rbind - gtable_row - gtable_row_spacer - gtable_show_layout - gtable_trim - gtable_width - gtools - guessMIMEType - guess_media - guess_type - guide_colorbar - guide_colourbar - guide_legend - guides - gvhd10 - gxlTreeNEL - gzcon - gzfile - h1 - h2 - h3 - h4 - h5 - h6 - hamming.distance - hamming.window - handle - handle_cookies - handle_data - handle_find - handle_reset - handle_setform - handle_setheaders - handle_setopt - hanning.window - happy - hasAllFlinks - hasArg - hasColorConsole - hasFun - hasLetterAt - hasLoadAction - hasMethod - hasMethods - hasMultiProbes - hasName - hasOnlyBaseLetters - hasSingleProbes - hasTsp - has_args - has_attr - has_cache - has_color - has_content - has_extension - has_internet - has_length - has_name - has_rownames - has_style - haskey - hat - hatvalues - have_name - hawaii - haynes - hcl - hclust - hclust.bclust - hclwizard - hcube - hcut - head - head.DataTable - head.LLint - head.Vector - head.matrix - headers - heart - hearttransplants - heat.colors - heat_hcl - heatmap - heatmap.2 - heckbert - heidel.diag - heightDetails - help - help.request - help.search - help.start - here - heterosis - hex - hex2RGB - hgroups - hi_andre - hi_html - hi_latex - hidden - hiergibbs - high2low - highr - hilight - hills - hirose - hist - hist.FD - hist.default - hist.scott - hist2d - histogram - history - histprior - hmac - hmac_sha1 - hmm.sop - hms_trans - hook_ffmpeg_html - hook_movecode - hook_optipng - hook_pdfcrop - hook_plot_asciidoc - hook_plot_custom - hook_plot_html - hook_plot_md - hook_plot_rst - hook_plot_tex - hook_plot_textile - hook_pngquant - hook_purl - hook_r2swf - hook_scianimator - hopkins - horizonplot - hour - house - housing - howardprior - hr - hsearch_db - hsearch_db_concepts - hsearch_db_keywords - hsv - hsv_palette - htmlDependencies - htmlDependency - htmlEscape - htmlParse - htmlPreserve - htmlTable - htmlTableWidget - htmlTableWidgetOutput - htmlTemplate - htmlTreeParse - html_print - htmltools - htmlwidgets - httpDELETE - httpGET - httpHEAD - httpOPTIONS - httpPOST - httpPUT - http_condition - http_date - http_error - http_status - http_type - httr - httr_dr - httr_options - huasahuasi - huber - hubers - huddersfield - hue_pal - hue_slice - humanReadable - hvc2mnsl - hybridizations - ica - iconv - iconvlist - icuGetCollate - icuSetCollate - id - idConverter - idata.frame - iden - identical - identicalCRS - identify - identity - identity_pal - identity_trans - ie_get_proxy_for_url - ie_proxy_info - ifelse - ifelse2 - image - image.default - image2Grid - imageScale - image_uri - img - imgur_upload - immer - imp.moments - imp.prob - imp.quantile - imp.weights - impacts - implicitGeneric - import - importIntoEnv - impsampling - impute - in.out - inEdges - inSide - in_gamut - include.self - includeCSS - includeHTML - includeMarkdown - includeScript - includeText - include_app - include_graphics - include_url - incongruent - indel - indepmetrop - index.AMMI - index.bio - index.smith - indexByRow - indices - inferno - infert - influence - influence.gam - influence.measures - inform - inheritedSlotNames - inherits - inherits_all - inherits_any - inherits_only - initDefaultClusterOptions - initExtension - initFieldArgs - initRNGstreamNode - initRefFields - init_oauth1.0 - init_oauth2.0 - initfun - initial.sp - initialize - initializeProject - injectHardMask - inject_funs - inline_expr - inpIDMapper - inplace - inrange - insensitive - insertClassMethods - insertMethod - insertSource - insertText - insertion - inset - inset2 - install.packages - installFoundDepends - installXLSXsupport - installed.packages - int - int2ftM - intImpacts - intToBits - intToUtf8 - int_along - int_len - integer - integrate - intensity - interaction - interaction.plot - interactive - interactiveTable - interleave - interp - interpSpline - interpolate - interpret.gam - intersect - intersect.Vector - intersect.nb - intersection - intersection2 - intervals - intervals.freq - intisasc - intisdesc - intraIDMapper - intrle - inv.logit - invIrM - invIrW - invPerm - invalid - inverse - inverse.gaussian - inverse.rle - invertStrand - invert_match - invisible - invoke - invokeRestart - invokeRestartInteractively - ions - iowagpa - iqr - iqrDiff - iris - iris3 - is - is.Coord - is.Formula - is.LLint - is.R - is.R6 - is.R6Class - is.Surv - is.array - is.atomic - is.bit - is.bitwhich - is.browsable - is.call - is.character - is.complex - is.count - is.data.frame - is.data.table - is.date - is.debug - is.dir - is.discrete - is.document_position - is.document_range - is.double - is.element - is.empty.model - is.environment - is.error - is.expression - is.facet - is.factor - is.finite - is.flag - is.formula - is.fractions - is.function - is.ggplot - is.ggproto - is.glyphplot - is.grob - is.gtable - is.infinite - is.integer - is.language - is.leaf - is.levelsMap - is.list - is.listLevelsMap - is.loaded - is.logical - is.matrix - is.mcmc - is.mcmc.list - is.memoised - is.memoized - is.message - is.mts - is.na - is.na.POSIXlt - is.na.Surv - is.na.data.frame - is.na.numeric_version - is.name - is.nan - is.null - is.null.DN - is.number - is.numeric - is.numeric.Date - is.numeric.POSIXt - is.numeric.difftime - is.numeric_version - is.object - is.object_sizes - is.ordered - is.package_version - is.pairlist - is.primitive - is.projected - is.qr - is.quoted - is.raster - is.ratetable - is.raw - is.readable - is.recordedplot - is.recursive - is.relistable - is.ri - is.scalar - is.shingle - is.single - is.singleton - is.sorted - is.source - is.stepfun - is.string - is.symbol - is.symmetric.glist - is.symmetric.nb - is.table - is.tclObj - is.theme - is.tibble - is.time - is.tkwin - is.trans - is.ts - is.tskernel - is.unit - is.unsorted - is.value - is.vector - is.warning - is.what - is.writeable - isAdjacent - isAvailable - isBalanced - isBaseNamespace - isCentroided - isCircular - isClass - isClassDef - isClassUnion - isConnected - isConstant - isConstantValue - isCurrent - isDevel - isDiagonal - isDirected - isDisjoint - isEmpty - isFALSE - isGeneric - isGrammarSymbol - isGroup - isIdCurrent - isIncomplete - isInitialized - isLDL - isLinear - isMatchingAt - isMatchingEndingAt - isMatchingStartingAt - isNA - isNamespace - isNamespaceLoaded - isNormal - isOpen - isRedundantHit - isRematched - isRestart - isS3method - isS3stdGeneric - isS4 - isSQLKeyword - isSQLKeyword.default - isSealedClass - isSealedMethod - isSeekable - isSelfHit - isSingleInteger - isSingleNumber - isSingleNumberOrNA - isSingleString - isSingleStringOrNA - isSmallGenome - isSorted - isStrictlySorted - isSymmetric - isSymmetric.matrix - isTRUE - isTRUEorFALSE - isTriangular - isUnique - isUnknown - isVersioned - isVirtualClass - isXMLString - isXS3Class - is_atomic - is_bare_atomic - is_bare_bytes - is_bare_character - is_bare_double - is_bare_env - is_bare_formula - is_bare_integer - is_bare_integerish - is_bare_list - is_bare_logical - is_bare_numeric - is_bare_raw - is_bare_string - is_bare_vector - is_binary_lang - is_box - is_bytes - is_call - is_call_stack - is_callable - is_character - is_chr_na - is_closure - is_condition - is_copyable - is_cpl_na - is_dbl_na - is_definition - is_dictionary - is_dictionaryish - is_double - is_empty - is_env - is_eval_stack - is_expr - is_expression - is_false - is_formula - is_formulaish - is_frame - is_function - is_greater_than - is_html_output - is_in - is_installed - is_int_na - is_integer - is_integerish - is_lang - is_latex_output - is_less_than - is_lgl_na - is_list - is_logical - is_missing - is_na - is_name - is_named - is_namespace - is_node - is_node_list - is_null - is_pairlist - is_primitive - is_primitive_eager - is_primitive_lazy - is_quosure - is_quosureish - is_quosures - is_raw - is_reference - is_scalar_atomic - is_scalar_bytes - is_scalar_character - is_scalar_double - is_scalar_integer - is_scalar_integerish - is_scalar_list - is_scalar_logical - is_scalar_raw - is_scalar_vector - is_scoped - is_spliced - is_spliced_bare - is_stack - is_string - is_symbol - is_symbolic - is_syntactic_literal - is_tibble - is_true - is_unary_lang - is_vector - is_vector_s3 - is_weakly_greater_than - is_weakly_less_than - isatty - isdebugged - islands - islay - isoMDS - isoreg - isoweek - isplit2 - italic - jack.after.boot - jacobianSetup - jagam - jenks71 - jeter2004 - jitter - join - join.freq - join.keys - join_all - joincount.mc - joincount.multi - joincount.test - jpeg - jsonlite - julian - julian.Date - julian.POSIXt - k3.linear - kable - kappa - kappa.default - kappa.lm - kappa.qr - kde2d - keep - keepSeqlevels - keepStandardChromosomes - kendall - kernapply - kernel - key - key2 - keyname - keyorder - keys - keysort - keysortorder - keytypes - keywords - kidney - kitten - klaR - kmeans - kmodes - knearneigh - knit - knit2html - knit2pandoc - knit2pdf - knit2wp - knit_child - knit_engines - knit_exit - knit_expand - knit_filter - knit_global - knit_hooks - knit_meta - knit_meta_add - knit_params - knit_params_yaml - knit_patterns - knit_print - knit_print.html - knit_print.shiny.tag - knit_print.shiny.tag.list - knit_print.trunc_mat - knit_rd - knit_rd_all - knit_theme - knit_watch - knitr - knn - knn.cv - knn1 - knn2nb - knots - kronecker - kruskal - kruskal.test - ks.test - ksmooth - kurtosis - kyphosis - l10n_info - l_max - l_ply - label - label_both - label_bquote - label_context - label_parsed - label_value - label_wrap_gen - labeling - labeller - labels - labels.default - labels.survreg - labs - lag - lag.listw - lag.plot - lagmess - lagsarlm - lambda.r - lang - langElts - lang_args - lang_args_names - lang_fn - lang_head - lang_modify - lang_name - lang_standardise - lang_tail - lang_type_of - languageEl - laplace - laply - lapply - larrows - last - lastAdd - lastC - last_plot - lateblight - latexToUtf8 - lattice - lattice.getOption - lattice.options - latticeExtra - latticeParseFormula - layer - layer_ - layer_data - layer_grob - layer_scales - layout - layout.heights - layout.north.arrow - layout.scale.bar - layout.show - layout.torture - layout.widths - layoutRegion - lazy - lazyLoad - lazyLoadDBexec - lazyLoadDBfetch - lazy_ - lazy_dots - lazy_eval - lazyeval - lbeta - lbinorm - lcPrefix - lcPrefixC - lcSuffix - lca - lchoose - lcm - lcprefix - lcsubstr - lcsuffix - ldTweedie - lda - ldahist - ldetS - ldply - leaves - lee - lee.mc - lee.test - left - legend - legendGrob - length - length.POSIXlt - length.bit - length.bitwhich - length.ri - lengths - letter - letterFrequency - letterFrequencyInSlidingView - letters - leuk - leukemia - level.colors - level_shardsplot - levelplot - levels - levels.Rle - levels.default - lextrB - lextrS - lextrW - lfactorial - lgamma - lgl - lgl_along - lgl_len - lh - libcurlVersion - library - library.dynam - library.dynam.unload - libxmlFeatures - libxmlVersion - licence - license - lighter - lik.CI - like - limitedLabels - lims - line - lineToGrob - lineXtester - linear.approx - linearizeMlist - lines - lines.default - linesGrob - linetype_pal - links - liply - list - list.dirs - list.files - list2 - list2env - listAttributes - listCol_l - listCol_w - listCurlOptions - listDatasets - listEdges - listEnsembl - listEnsemblArchives - listFilters - listFromMethods - listFromMlist - listLen - listMarts - listOrganisms - list_along - list_border_styles - list_files_with_exts - list_files_with_type - list_len - list_spinners - listw2U - listw2WB - listw2lines - listw2mat - listw2sn - listw2star - littler - ll - llines - llply - lm - lm.LMtests - lm.fit - lm.gls - lm.influence - lm.morantest - lm.morantest.exact - lm.morantest.sad - lm.ridge - lm.wfit - lmList - lmList.formula - lmSLX - lme - lme.formula - lme.lmList - lmeControl - lmeStruct - lmplot2 - lmsreg - lmwork - lnd - load - loadDb - loadHDF5SummarizedExperiment - loadMethod - loadMeuse - loadModule - loadNamespace - loadPkgRdMacros - loadRcppClass - loadRcppModules - loadRdMacros - load_cache - loadcmp - loadedNamespaces - loadedPackages - loadhistory - loadingNamespaceInfo - loadings - local - localAple - localG - localeToCharset - locally - localmoran - localmoran.exact - localmoran.exact.alt - localmoran.sad - locator - lockBinding - lockEnvironment - locked - loclda - locpoly - locpvs - loess - loess.control - loess.smooth - log - log10 - log10_trans - log1p - log1p_trans - log2 - log2_trans - logDet - logLik - logLik.gam - logLik.sarlm - logLik.spautolm - logSumExp - log_breaks - log_trans - logan - logb - logctablepost - logfact - logicOp - logical - logisticpost - logit - logit_trans - loglin - loglm - loglm1 - logm - logpoissgamma - logpoissnormal - logratio2foldchange - logtrans - longestConsecutive - longlat.scales - longley - lookup.xport - low2high - lower.to.upper.tri.inds - lower.tri - lowerTriangle - lowertriangle - lowess - lplot.xy - lpoints - lpolygon - lqs - lqs.formula - lrect - ls - ls.diag - ls.funs - ls.print - ls.size - ls.str - lsegments - lsf.str - lsfit - lst - lst_ - ltext - ltransform3dMatrix - ltransform3dto3d - ltsreg - lu - lung - luv_colours - lvq1 - lvq2 - lvq3 - lvqinit - lvqtest - lynx - m_ply - mad - madDiff - magenta - magic - magic.post.proc - magma - magrittr - mahalanobis - maintainer - make.contrasts - make.db.names - make.db.names.default - make.groups - make.link - make.names - make.packages.html - make.rgb - make.socket - make.sym.nb - make.unique - makeARIMA - makeActiveBinding - makeClassRepresentation - makeClassTemplate - makeCluster - makeCodeWalker - makeConstantFolder - makeContent - makeContext - makeDataPackage - makeDependencyRelative - makeExtends - makeForkCluster - makeGOGraph - makeGRangesFromDataFrame - makeGRangesListFromDataFrame - makeGRangesListFromFeatureFragments - makeGeneric - makeLocalsCollector - makeMPIcluster - makeMPImaster - makeMethodsList - makeNWScluster - makeNWSmaster - makeNindexFromArrayViewport - makePSOCKcluster - makePrototypeFromClassDef - makeRaw - makeRweaveLatexCodeRunner - makeSOCKcluster - makeSOCKmaster - makeStandardGeneric - makeSummarizedExperimentFromDataFrame - makeSummarizedExperimentFromExpressionSet - makeUsageCollector - make_call - make_eg_to_go_map - make_go_to_eg_map - make_style - make_translations_pkg - makegrid - makepredictcall - makevars_site - makevars_user - mammals - manaus - manova - mantelhaen.test - manual_pal - mapGenomeBuilds - mapIds - mapIds_base - mapLegendGrob - mapLevels - mapOrder - mapSeqlevels - map_data - mapasp - maply - mappedLkeys - mappedRkeys - mappedkeys - mapping_color_to_fill - mapplot - mapply - mapvalues - marathontimes - margin - margin.table - marginal.plot - markdown - markdownExtensions - markdownHTMLOptions - markdownToHTML - markers - marrangeGrob - mask - maskGaps - maskMotif - maskeddim - maskedncol - maskednrow - maskedratio - maskedwidth - masks - mass - mat.or.vec - mat2listw - matStig - match - match.arg - match.call - match.fun - match.ratetable - matchClasses - matchControls - matchIntegerPairs - matchIntegerQuads - matchLRPatterns - matchNamespaces - matchPDict - matchPWM - matchPattern - matchProbePair - matchSignature - match_df - matchcols - matchprobes - matchpt - math_format - matlines - matplot - matplotlib - matpoints - matrix - matrixClass - matrixStats - mauchly.test - max - max.bit - max.bitwhich - max.col - max.ri - max1 - maxSE - maxScore - maxWeights - max_height - max_width - maybe_missing - mc.reset.stream - mcMap - mca - mcaffinity - mccollect - mcdet_setup - mclapply - mcmapply - mcmc - mcmc.list - mcmcUpgrade - mcnemar.test - mcolAsRleList - mcols - mcpar - mcparallel - mcycle - md4 - md5 - md5sum - mday - mdply - mean - mean.Date - mean.DelayedArray - mean.POSIXct - mean.POSIXlt - mean.Rle - mean.default - mean.difftime - mean0 - mean2 - meanOver - mean_cl_boot - mean_cl_normal - mean_sdl - mean_se - meanabsdev - meanvar - meclight - median - median.Rle - median.default - median_hilow - medpolish - melanoma - melon - melt - melt.data.table - mem.limits - memCompress - memDecompress - members - memoise - memoize - memory.limit - memory.profile - memory.size - menarche - mendoapply - menu - merge - merge.data.frame - merge.default - merge.list - mergeByOverlaps - mergeIUPACLetters - mergeMethods - mergeToNamespaceAndExport - merged.stack - mergedTrellisLegendGrob - mergeorder - mergesort - mergesortorder - message - message_cnd - message_for_status - metaNameUndo - metadata - method.skeleton - methodSignatureMatrix - methods - methodsPackageMetaName - meuse - meuse.area - meuse.grid - meuse.grid_ll - meuse.riv - mgEdgeData - mgEdgeDataDefaults - mgcv - mget - mgus - mgus2 - michelson - mid - mid.in - midwest - mime - mimeTypeExtensions - mimemap - min - min.bit - min.bitwhich - min.ri - min0 - minScore - minWeights - mini.roots - minify - minn38 - minute - mirror2html - mismatch - mismatchSummary - mismatchTable - missing - missingArg - missing_arg - mixcolor - mixedorder - mixedsort - mkAllStrings - mkScalar - mle - mlistMetaName - mlply - mnndR - mnormt.onesided - mnormt.twosided - mnsl - mnsl2hex - mnsl2hvc - mnsl_hues - mod - mode - model.extract - model.frame - model.frame.default - model.matrix - model.matrix.default - model.matrix.gam - model.matrix.lm - model.offset - model.part - model.response - model.tables - model.weights - model_beta_label - model_beta_variables - model_response_variables - modifications - modify - modifyList - modifyRange - modify_url - mom_calc - mom_calc_int2 - moment - moments_setup - mona - mono.con - monograph_group - montecarlo - month - month.abb - month.name - monthplot - months - months.Date - months.POSIXt - mood.test - moran - moran.mc - moran.plot - moran.test - morley - mosaicplot - mostEdges - motor - motors - moveToGrob - mpg - mrc2vi - mroot - msfit - msleep - msplot - mstack - mstree - mtcars - mtext - multi.menu - multiTextGatherer - multi_add - multi_cancel - multi_fdset - multi_list - multi_run - multi_set - multiassign - multiedit - multinom - multipleClasses - multiply_by - multiply_by_matrix - multisplit - munsell - muscle - mut_attrs - mut_latin1_locale - mut_mbcs_locale - mut_node_caar - mut_node_cadr - mut_node_car - mut_node_cdar - mut_node_cddr - mut_node_cdr - mut_node_tag - mut_utf8_locale - mutate - muted - mv - mvfft - mvn - mvrnorm - my_key - my_pubkey - mycontour - myeloid - mz - n.comp.nb - n2mfrow - nCm - nLnode - nPairs - nRnode - na.action - na.contiguous - na.count - na.exclude - na.fail - na.omit - na.pass - na.replace - na.rpart - na_chr - na_cpl - na_dbl - na_int - na_lgl - naiveBayes - naiveRangeMapper - name_rows - names - names.POSIXlt - names.XMLNode - names2 - namespaceExport - namespaceImport - namespaceImportClasses - namespaceImportFrom - namespaceImportMethods - napredict - naprint - naresid - nargs - narrow - nasa - natives - navigateToFile - nb - nb2INLA - nb2WB - nb2blocknb - nb2lines - nb2listw - nb2mat - nbcost - nbcosts - nbdists - nblag - nblag_cumul - nc.sids - nchain - nchar - nclass.FD - nclass.Sturges - nclass.freq - nclass.scott - ncol - nearPD - neardate - nearest - nedit - neditAt - neditEndingAt - neditStartingAt - needUpdate - needwunsQS - neg.bin - negative.binomial - negbin - negexp.SSival - nelder - nested.corr - nestedListing - neuro - new - new.env - new.name - new.packages - new2 - newBasic - newClassRepresentation - newEmptyObject - newHTMLDoc - newMPInode - newNWSnode - newSOCKnode - newXMLCDataNode - newXMLCommentNode - newXMLDTDNode - newXMLDoc - newXMLNamespace - newXMLNode - newXMLPINode - newXMLTextNode - new_blob - new_box - new_call - new_character - new_character_along - new_cnd - new_complex - new_complex_along - new_data_mask - new_definition - new_double - new_double_along - new_environment - new_formula - new_function - new_handle - new_integer - new_integer_along - new_language - new_list - new_list_along - new_logical - new_logical_along - new_node - new_ornament - new_output_handler - new_overscope - new_pillar_shaft - new_pillar_shaft_simple - new_pool - new_quosure - new_raw - new_raw_along - new_tibble - newcomb - news - next - nextRNGStream - nextRNGSubStream - nextn - nfGroupedData - ngettext - ngonGrob - nhit - nhtemp - nindel - nir_list - niter - nitrofen - nlevels - nlm - nlme - nlme.formula - nlme.nlsList - nlmeControl - nlmeStruct - nlminb - nls - nls.control - nlsList - nlsList.formula - nlschools - nm - nmGroupedData - nmatch - nmismatch - nnet - nnet.default - nnet.formula - nnetHess - nnode - nnodes - nnzero - noNA - nobj - nobs - nodal - node - nodeData - nodeDataDefaults - nodeRenderInfo - node_caar - node_cadr - node_car - node_cdar - node_cddr - node_cdr - node_poke_caar - node_poke_cadr - node_poke_car - node_poke_cdar - node_poke_cddr - node_poke_cdr - node_poke_tag - node_tag - nodes - nonS3methods - nonadditivity - noquote - norm - norm.ci - normControls - normal.freq - normal.normal.mix - normal.select - normal_print - normalize - normalizeDoubleBracketSubscript - normalizePath - normalizeSingleBracketReplacementValue - normalizeSingleBracketSubscript - normarea - normchi2post - normnormexch - normpostpred - normpostsim - not - notExp - notExp2 - notLog - notLog2 - not_empty - note - notes - nottem - npk - npr1 - nrow - nrun - ns - ns_env - ns_env_name - ns_imports_env - nsimplex - nsize - nsl - nslookup - ntester - nties - nuclear - nucleotideFrequencyAt - nucleotideSubstitutionMatrix - null.space.dimension - nullGrob - numEdges - numNoEdges - numNodes - num_colors - numcolwise - numeric - numericDeriv - numeric_version - nunique - nvalid - nvar - nwtco - nydata - nz - nz_height - nzchar - oats - oauth1.0_token - oauth2.0_access_token - oauth2.0_authorize_url - oauth2.0_token - oauth_app - oauth_callback - oauth_endpoint - oauth_endpoints - oauth_exchanger - oauth_header - oauth_listener - oauth_service_token - oauth_signature - obj_sum - object.size - objects - ocat - occupationalStatus - odd - offset - ogive.freq - old.make.sym.nb - old.packages - oldClass - oligonucleotideFrequency - oligonucleotideTransitions - olvq1 - on.exit - onRender - onStaticRenderComplete - on_failure - onenormest - oneway - oneway.test - ooplot - open - open.connection - open.srcfile - open.srcfilealias - open.srcfilecopy - openPDF - openProject - openVignette - openssl - openssl_config - optBlock - optFederov - optMonteCarlo - optim - optimHess - optimise - optimize - options - options.manager - opts_chunk - opts_current - opts_hooks - opts_knit - opts_template - or - order - order.dendrogram - order.group - orderIntegerPairs - orderIntegerQuads - orderPvalue - orderSeqlevels - ordered - ordergibbs - ordinal - ordinal_format - orgPackageName - organism - otherInfo - outer - outputInt - output_ansi - output_utf8 - ovarian - over - overDF_for_rgeos - overlapsAny - overlapsRanges - overplot - overscope_clean - overscope_eval_next - ozone - p - p.adjust - p.adjust.methods - p.adjustSP - pData - pacf - pack - packBits - packGrob - package.dependencies - package.skeleton - package.version - packageDescription - packageEvent - packageHasNamespace - packageName - packageSlot - packageStartupMessage - packageStatus - packageVersion - package_dependencies - package_native_routine_registration_skeleton - package_version - packet.number - packet.panel.default - padAndClip - page - painters - pairlist - pairs - pairs.default - pairwise.prop.test - pairwise.t.test - pairwise.table - pairwise.wilcox.test - pairwiseAlignment - palette - palindromeArmLength - palindromeLeftArm - palindromeRightArm - pam - pamCIP - pancrCaIni - pandoc - panel.2dsmoother - panel.3dbars - panel.3dpolygon - panel.3dscatter - panel.3dtext - panel.3dwire - panel.RgoogleMaps - panel.abline - panel.ablineq - panel.arrows - panel.average - panel.axis - panel.barchart - panel.brush.splom - panel.bwplot - panel.cloud - panel.contourplot - panel.curve - panel.densityplot - panel.dotplot - panel.ecdfplot - panel.ellipse - panel.error - panel.fill - panel.ggmap - panel.grid - panel.gridplot - panel.histogram - panel.horizonplot - panel.identify - panel.identify.cloud - panel.identify.qqmath - panel.key - panel.levelplot - panel.levelplot.points - panel.levelplot.raster - panel.linejoin - panel.lines - panel.link.splom - panel.lmline - panel.lmlineq - panel.loess - panel.mapplot - panel.mathdensity - panel.number - panel.overplot - panel.pairs - panel.parallel - panel.points - panel.pointsplot - panel.polygon - panel.polygonsplot - panel.qq - panel.qqmath - panel.qqmath.tails - panel.qqmath.xyarea - panel.qqmathline - panel.quantile - panel.rect - panel.refline - panel.rootogram - panel.rug - panel.scaleArrow - panel.segments - panel.segplot - panel.smooth - panel.smoothScatter - panel.smoother - panel.spline - panel.splom - panel.stripplot - panel.superpose - panel.superpose.2 - panel.superpose.plain - panel.text - panel.tmd.default - panel.tmd.qqmath - panel.tskernel - panel.violin - panel.voronoi - panel.wireframe - panel.xblocks - panel.xyarea - panel.xyplot - panel_cols - panel_rows - par - parApply - parCapply - parLapply - parLapplyLB - parMM - parPvclust - parRapply - parRenderInfo - parSapply - parSapplyLB - paracsho - parallel - parallelSlotNames - parallelVectorNames - parallelplot - params - parcoord - parent.env - parent.frame - parse - parseDTD - parseHTTPHeader - parseLatex - parseNamespaceFile - parseURI - parseXMLAndAdd - parse_Rd - parse_all - parse_date - parse_expr - parse_exprs - parse_format - parse_headers - parse_headers_list - parse_http_date - parse_media - parse_multipart - parse_quo - parse_quos - parse_quosure - parse_quosures - parse_url - parsed_content - partimat - paste - paste0 - pat_asciidoc - pat_brew - pat_html - pat_md - pat_rnw - pat_rst - pat_tex - pat_textile - path.analysis - path.expand - path.package - path.rpart - pathGrob - pathListing - pathWeights - pattern - patternFrequency - paulsen - pbc - pbeta - pbetap - pbetat - pbgyr - pbinom - pbirthday - pc - pcauchy - pchisq - pcls - pcompare - pcompareRecursively - pcramer - pcre_config - pdBlocked - pdCompSymm - pdConstruct - pdDiag - pdFactor - pdIdent - pdIdnot - pdLogChol - pdMat - pdMatrix - pdNatural - pdSymm - pdTens - pdf - pdf.options - pdfFonts - pdisc - pdiscp - pdiscrete - peaks - peek_option - peek_options - pen.edf - peptides - percent - percent_format - periodicSpline - permn - permutations - permute - person - personList - persp - petrol - pexp - pf - pgamma - pgap - pgeom - phead - phenoData - phenoModel - phiX174Phage - phicoef - phones - phyper - physical - physical.default - pi - pico - pictex - pid - pie - pigs - pillar - pillar_shaft - pintersect - pipe - pkgDepends - pkgKitten - pkgVignettes - pkg_env - pkg_env_name - pkgconfig - place.knots - placeGrob - plantTraits - plasma - playWithPerPackageHelpPage - plclust - plineplot - plnorm - plogis - plogr - plot - plot.AMMI - plot.Gabriel - plot.bayes - plot.bayes2 - plot.default - plot.deldir - plot.design - plot.divchain - plot.ecdf - plot.function - plot.gam - plot.graph.freq - plot.group - plot.listw - plot.lm2 - plot.lme - plot.mc.sim - plot.mst - plot.nb - plot.new - plot.relative - plot.skater - plot.snowTimingData - plot.spcor - plot.spec.coherency - plot.spec.phase - plot.stepfun - plot.tile.list - plot.triang.list - plot.trls - plot.ts - plot.venn - plot.window - plot.xy - plotCI - plotDispEsts - plotLowess - plotMA - plotPCA - plotViewport - plot_closest - plot_crop - plot_hex - plot_mnsl - plotcp - plotmeans - plots - plrv - pltree - pluton - plyr - pmatch - pmatchPattern - pmax - pmax.int - pmax2 - pmin - pmin.int - pmin2 - pnbinom - png - pnorm - point.in.polygon - points - points.default - points2grid - pointsGrob - poisons - poissgamexch - poisson - poisson.gamma.mix - poisson.test - polar - polarLAB - polarLUV - polr - poly - poly2nb - polySpline - polygon - polygon.freq - polygonGrob - polygon_regular - polygons - polylineGrob - polym - polypath - polyroot - polys.plot - pooledSD - pop - pop.viewport - popViewport - populate - populate_env - pos - pos.to.env - position_dodge - position_fill - position_identity - position_jitter - position_jitterdodge - position_nudge - position_stack - possibleExtends - post - postDrawDetails - postForm - postNode - postdoc - postscript - postscriptFonts - potato - poverlaps - power - power.anova.test - power.prop.test - power.t.test - powerWeights - ppgetregion - ppinit - pplik - ppoints - ppois - ppr - ppregion - prcomp - pre - preDrawDetails - precede - precip - predict - predict.LogitBoost - predict.SLX - predict.bam - predict.ellipsoid - predict.gam - predict.glm - predict.lm - predict.sarlm - predict.trls - predplot - prelimtlist - prepanel.default.bwplot - prepanel.default.cloud - prepanel.default.densityplot - prepanel.default.histogram - prepanel.default.levelplot - prepanel.default.parallel - prepanel.default.qq - prepanel.default.qqmath - prepanel.default.splom - prepanel.default.xyplot - prepanel.ecdfplot - prepanel.horizonplot - prepanel.lmline - prepanel.loess - prepanel.mapplot - prepanel.qqmathline - prepanel.rootogram - prepanel.segplot - prepanel.spline - prepanel.tmd.default - prepanel.tmd.qqmath - prepend - prependContent - preplot - preproc - presidential - presidents - pressure - prettify - pretty - pretty.default - prettyNum - pretty_breaks - pretty_bytes - pretty_dt - pretty_ms - pretty_sec - prettyunits - previewRd - prim_name - primary_selection - princomp - print - print.AsIs - print.DLLInfo - print.DLLInfoList - print.DLLRegisteredRoutines - print.DMS - print.Date - print.Dlist - print.LMtestlist - print.ME_res - print.NativeRoutineList - print.POSIXct - print.POSIXlt - print.SFResult - print.anova.gam - print.bayes - print.bit - print.bitwhich - print.by - print.condition - print.connection - print.data.frame - print.default - print.difftime - print.eigen - print.factor - print.function - print.gam - print.glh.test - print.gmsar - print.hexmode - print.jclist - print.jcmulti - print.libraryIQR - print.list.pairs - print.listof - print.listw - print.localmoranex - print.localmoransad - print.moranex - print.moransad - print.nb - print.noquote - print.numeric_version - print.octmode - print.packageInfo - print.physical - print.proc_time - print.restart - print.ri - print.rle - print.sarlm - print.sarlm.pred - print.simple.list - print.snowTimingData - print.spautolm - print.spcor - print.srcfile - print.srcref - print.stsls - print.summary.gam - print.summary.gmsar - print.summary.localmoransad - print.summary.moransad - print.summary.sarlm - print.summary.spautolm - print.summary.stsls - print.summary.table - print.summaryDefault - print.table - print.tileInfo - print.virtual - print.warnings - print.xtable - print.xtableFtable - print.xtableList - print.xtableMatharray - printAtomicVectorInAGrid - printCoefmat - printSpMatrix - printSpMatrix2 - print_if_interactive - printcp - prior.two.parameters - prmat - prmatrix - probability_trans - probeRangeMapper - probit_trans - probmap - probplot - proc.time - process.events - processXInclude - processingInstruction.SAX - prod - product - profile - progress - progress_bar - progress_none - progress_text - progress_time - progress_tk - progress_win - prohibitGeneric - proj - proj4string - promax - promoters - prompt - promptClass - promptData - promptImport - promptMethods - promptPackage - prop.table - prop.test - prop.trend.test - proteins - protocolData - prototype - provideDimnames - provider - providerVersion - prune - prune.rpart - prunecost - prunemst - ps.options - psetdiff - psi.bisquare - psi.hampel - psi.huber - psigamma - psignrank - pskill - psms - psnice - pspline - psurvreg - psychademic - pt - ptail - ptukey - pubMedIds - puffin - punif - punion - purl - push - push.viewport - pushBack - pushBackLength - pushViewport - push_options - putPlot - pvalueFormatter - pvclust - pvec - pvpick - pvrect - pvs - pweibull - pwilcox - pyears - q - qbeta - qbinom - qbirthday - qcauchy - qchisq - qda - qdiscrete - qexp - qf - qgamma - qgeom - qhyper - qlnorm - qlogis - qnbinom - qnorm - qplot - qpois - qq - qq.gam - qq_show - qqline - qqmath - qqnorm - qqnorm.aov - qqplot - qr - qr.Q - qr.R - qr.X - qr.coef - qr.default - qr.fitted - qr.qty - qr.qy - qr.resid - qr.solve - qrR - qsignrank - qsurvreg - qt - qtukey - quade.test - quadlines - quadplot - quadpoints - quadtrafo - quakes - quality - qualitySubstitutionMatrices - quantcut - quantile - quantile.Rle - quarter - quarters - quarters.Date - quarters.POSIXt - quartz - quartz.options - quartz.save - quartzFont - quartzFonts - quasi - quasibinomial - quasipoisson - queencell - queryHits - queryLength - quickdf - quickorder - quickplot - quicksort - quicksortorder - quinModel - quine - quit - qunif - quo - quo_expr - quo_get_env - quo_get_expr - quo_is_call - quo_is_lang - quo_is_missing - quo_is_null - quo_is_symbol - quo_is_symbolic - quo_label - quo_name - quo_set_env - quo_set_expr - quo_squash - quo_text - quos - quos_auto_name - quote - qweibull - qwilcox - r - r2dtable - rBind - rTweedie - rWishart - r_ply - radixorder - radixsort - radixsortorder - raftery.diag - rainbow - rainbow_hcl - raise_to_power - ralstonia - ramorder - ramsort - ramsortorder - rand_bytes - rand_num - rand_seed - random.effects - randomEGraph - randomGraph - randomNodeGraph - randu - ranef - range - range.bit - range.bitwhich - range.default - range.ri - range01 - rangeComparisonCodeToLetter - ranges - rank - rankMatrix - rankSeqlevels - raply - rapply - rasterGrob - rasterImage - ratetable - ratetableDate - rational - rats - raw - rawConnection - rawConnectionValue - rawShift - rawToBits - rawToChar - raw_along - raw_len - raw_output - rbeta - rbind - rbind.DataFrame - rbind.SpatialLines - rbind.SpatialLinesDataFrame - rbind.SpatialMultiPoints - rbind.SpatialMultiPointsDataFrame - rbind.SpatialPixels - rbind.SpatialPixelsDataFrame - rbind.SpatialPoints - rbind.SpatialPointsDataFrame - rbind.SpatialPolygons - rbind.SpatialPolygonsDataFrame - rbind.data.frame - rbind.fill - rbind.fill.matrix - rbind.pages - rbind2 - rbind_pages - rbindlist - rbinom - rbridge - rc.getOption - rc.options - rc.settings - rc.status - rcauchy - rchisq - rcond - rda - rdaPath - rdirichlet - rdiscrete - rdply - reStruct - read - read.00Index - read.AnnotatedDataFrame - read.DIF - read.ENVI - read.MIAME - read.S - read.agpMask - read.and.check - read.arff - read.asciigrid - read.coda - read.coda.interactive - read.csv - read.csv2 - read.dat2listw - read.dbf - read.dcf - read.delim - read.delim2 - read.dta - read.epiinfo - read.fortran - read.ftable - read.fwf - read.gal - read.gapMask - read.geoda - read.gif - read.gwt2nb - read.jags - read.liftMask - read.matrix.csr - read.mtp - read.octave - read.openbugs - read.rmMask - read.socket - read.spss - read.ssd - read.systat - read.table - read.trfMask - read.xls - read.xport - readAAMultipleAlignment - readAAStringSet - readBStringSet - readBin - readChar - readCitationFile - readDNAMultipleAlignment - readDNAStringSet - readExpressionSet - readHB - readHTMLList - readHTMLTable - readKallisto - readKallistoBootstrap - readKeyValueDB - readLines - readMM - readNEWS - readPreference - readRDS - readRGB - readRNAMultipleAlignment - readRNAStringSet - readRenviron - readSolrDoc - read_bytes - read_cert - read_cert_bundle - read_chunk - read_demo - read_json - read_key - read_lines - read_lines_bytes - read_p12 - read_p7b - read_pem - read_pubkey - read_rforge - read_yaml - readhex - readline - realize - recalc - recast - recenter - reciprocal_trans - reconcilePropertiesAndPrototype - recordGraphics - recordPlot - recover - rect - rect.hclust - rectGrob - rectangle.window - recvData - recvData.MPInode - recvData.NWSnode - recvData.SOCKnode - recvOneData - recvOneData.MPIcluster - recvOneData.NWScluster - recvOneData.SOCKcluster - recvOneResult - recvResult - recycleArg - recycleCharacterArg - recycleIntegerArg - recycleLogicalArg - recycleNumericArg - red - redblue - redgreen - reduce - reduce.nn - refdim - reflect - reformulate - reg.finalizer - reg.gprior.post - reg.homog - regex - regexec - regexpr - registerImplicitGenerics - registerPlugin - registerS3method - registerS3methods - registeredRenderers - regmatches - regroup - regtest.bit - regular_minor_breaks - rejectionRate - rejectsampling - rel - relativeRanges - relativeneigh - releaseDate - releaseName - relevel - relist - relistToClass - remapHits - rematchDefinition - remission - remove - remove.duplicates - remove.packages - remove.vars - removeAttributes - removeChildren - removeClass - removeEdge - removeEdgesByWeight - removeGeneric - removeGrob - removeMethod - removeMethods - removeMethodsObject - removeNode - removeNodes - removeSource - removeTaskCallback - removeXMLNamespaces - remove_missing - remove_rownames - rename - rename.vars - renameSeqlevels - renderDependencies - renderDocument - renderHtmlTableWidget - renderMarkdown - renderTags - render_asciidoc - render_axes - render_html - render_jekyll - render_latex - render_listings - render_markdown - render_rst - render_strips - render_sweave - render_textile - rendererExists - rendererOutputType - renumerate - reorder - reorder.factor - reorderGrob - rep - rep.Date - rep.POSIXct - rep.POSIXlt - rep.factor - rep.int - rep.numeric_version - rep2abI - rep_along - rep_len - repair_names - repeat.time - repfromto - replace - replaceAt - replaceLetterAt - replaceNodes - replaceROWS - replay - replayPlot - replicate - replications - reporter - representation - require - requireMethods - requireNamespace - rerequest - resample - resampling.cv - resampling.model - resaveRdaFiles - rescale - rescale01 - rescale11 - rescale_max - rescale_mid - rescale_none - rescale_pal - reset - reset.options - resetClass - resetGeneric - resetOptions - resetOptions.character - resetOptions.default - reset_config - reshape - reshape2 - resid - residplot - residuals - residuals.gam - residuals.glm - residuals.gmsar - residuals.lm - residuals.sarlm - residuals.spautolm - residuals.stsls - resize - resizePanels - resolution - resolveDependencies - resolveHJust - resolveRasterSize - resolveVJust - resort_base - restartDescription - restartFormals - restartSession - restarting - restorePreserveChunks - restoreSeqlevels - restore_raw_output - restrict - retinopathy - retracemem - return - returnValue - return_from - return_to - rev - rev.Rle - rev.default - rev.rlepack - revElements - revalue - reverse - reverseComplement - reverseEdgeDirections - reverseSplit - reverse_trans - revmap - revoke_all - rexp - rf - rfs - rgamma - rgb - rgb2hsv - rgb2mnsl - rgeom - rglist - rhDNase - rhyper - ri - rice - rich.colors - ridge - rig - rigamma - right - ripemd160 - rivers - rlang - rle - rleid - rleidv - rlepack - rleunpack - rlm - rlnorm - rlogis - rlply - rm - rmnorm - rms.curv - rmt - rmultinom - rmultinomial - rmultz2 - rmvn - rnbinom - rnegbin - rnorm - road - robustt - rocco - rock - roman2int - rookcell - rootogram - rotifer - round - round.Date - round.POSIXt - round_any - roundrectGrob - row - row.names - row.names.data.frame - row.names.default - rowAlls - rowAnyMissings - rowAnyNAs - rowAnys - rowAvgsPerColSet - rowCollapse - rowCounts - rowCummaxs - rowCummins - rowCumprods - rowCumsums - rowData - rowDiffs - rowIQRDiffs - rowIQRs - rowLogSumExps - rowMadDiffs - rowMads - rowMax - rowMaxs - rowMeans - rowMeans2 - rowMedians - rowMin - rowMins - rowOrderStats - rowProds - rowQ - rowQuantiles - rowRanges - rowRanks - rowSdDiffs - rowSds - rowSums - rowSums2 - rowTabulates - rowVarDiffs - rowVars - rowWeightedMads - rowWeightedMeans - rowWeightedMedians - rowWeightedSds - rowWeightedVars - rowid - rowid_to_column - rowidv - rowmask - rownames - rownames_to_column - rowsum - rowsum.data.frame - rowsum.default - rpart - rpart.control - rpart.exp - rpois - rpretty - rpubsUpload - rsa_decrypt - rsa_encrypt - rsa_keygen - rsignrank - rsparsematrix - rsq.rpart - rsqliteVersion - rst2pdf - rst_abort - rst_exists - rst_jump - rst_list - rst_maybe_jump - rst_muffle - rstandard - rstudent - rstudioapi - rsurvreg - rt - rtPCR - rtags - rtime - rtruncated - rug - rule - runLength - runMPIslave - runValue - runif - runmad - runmax - runmean - runmed - runmin - running - runq - runquantile - runsd - runsum - runwtsum - ruspini - rweibull - rwiener - rwilcox - rwmetrop - rygbp - s - sQuote - sRGB - sacsarlm - saddle - saddle.distn - safeExplode - salinity - sammon - sample - sample.ExpressionSet - sample.MultiSet - sample.int - sample.split - sampleNames - samples - sanitize - sanitize.final - sanitize.numbers - sapply - saturate - save - save.image - saveDb - saveHDF5SummarizedExperiment - savePlot - savePlotAsImage - saveRDS - saveWidget - saveXML - saveXStringSet - save_html - savehistory - scaffoldWidget - scale - scale.default - scale_alpha - scale_alpha_continuous - scale_alpha_discrete - scale_alpha_identity - scale_alpha_manual - scale_color_brewer - scale_color_continuous - scale_color_discrete - scale_color_distiller - scale_color_gradient - scale_color_gradient2 - scale_color_gradientn - scale_color_grey - scale_color_hue - scale_color_identity - scale_color_manual - scale_colour_brewer - scale_colour_continuous - scale_colour_date - scale_colour_datetime - scale_colour_discrete - scale_colour_distiller - scale_colour_gradient - scale_colour_gradient2 - scale_colour_gradientn - scale_colour_grey - scale_colour_hue - scale_colour_identity - scale_colour_manual - scale_fill_brewer - scale_fill_continuous - scale_fill_date - scale_fill_datetime - scale_fill_discrete - scale_fill_distiller - scale_fill_gradient - scale_fill_gradient2 - scale_fill_gradientn - scale_fill_grey - scale_fill_hue - scale_fill_identity - scale_fill_manual - scale_linetype - scale_linetype_continuous - scale_linetype_discrete - scale_linetype_identity - scale_linetype_manual - scale_radius - scale_shape - scale_shape_continuous - scale_shape_discrete - scale_shape_identity - scale_shape_manual - scale_size - scale_size_area - scale_size_continuous - scale_size_date - scale_size_datetime - scale_size_discrete - scale_size_identity - scale_size_manual - scale_x_continuous - scale_x_date - scale_x_datetime - scale_x_discrete - scale_x_log10 - scale_x_reverse - scale_x_sqrt - scale_x_time - scale_y_continuous - scale_y_date - scale_y_datetime - scale_y_discrete - scale_y_log10 - scale_y_reverse - scale_y_sqrt - scale_y_time - scales - scan - scans - scat - scatmat - scatter.smooth - scheffe.test - schemaValidationErrorHandler - schmidt - scientific - scientific_format - scoped_bindings - scoped_env - scoped_envs - scoped_names - scoped_options - score - scp - screen - screeplot - sd - sdDiff - sdiag - se.contrast - se.exprs - seD - seal - sealClass - seals - search - searchpaths - seaweed - sec_axis - second - see_if - seed - seek - seek.connection - seekViewport - seemsS4Object - segments - segmentsGrob - segplot - seine - select - select.list - select.spatial - selectChannels - selectDirectory - selectFile - selectHits - selectMethod - selectNearest - selectSome - selectSuperClasses - selfStart - selfmatch - selfmatchIntegerPairs - selfmatchIntegerQuads - semat - sendCall - sendData - sendData.MPInode - sendData.NWSnode - sendData.SOCKnode - sendToConsole - sentences - seplot - seq - seq.Date - seq.POSIXt - seq.default - seq.int - seq2 - seq2_along - seq_along - seq_gradient_pal - seq_len - seq_mnsl - seqinfo - seqlengths - seqlevels - seqlevels0 - seqlevelsInGroup - seqlevelsInUse - seqlevelsStyle - seqnames - seqtype - sequence - sequential_hcl - serialize - serializeJSON - sessionInfo - set - set.ClusterOption - set.VerboseOption - set.ZeroPolicyOption - set.coresOption - set.mcOption - set.seed - set.spChkOption - set2key - set2keyv - setAs - setBitIndicators - setBreakpoint - setChildren - setClass - setClassUnion - setCompilerOptions - setCursorPosition - setDF - setDT - setDTthreads - setDataPart - setDefaultCluster - setDefaultClusterOptions - setDocumentContents - setEPS - setGeneric - setGenericImplicit - setGraphicsEventEnv - setGraphicsEventHandlers - setGrob - setGroupGeneric - setHook - setInpBimapFilter - setIs - setListElement - setLoadAction - setLoadActions - setMPIcluster - setMethod - setMethods - setNames - setNamespaceInfo - setNumericRounding - setOldClass - setPS - setPackageName - setPersistentValue - setPrimitiveMethods - setRcppClass - setRealizationBackend - setRefClass - setReplaceMethod - setRepositories - setSelectionRanges - setSessionTimeLimit - setTCPNoDelay - setTimeLimit - setTkProgressBar - setTxtProgressBar - setValidity - setValidity2 - setWidgetIdSeed - setXMLNamespace - set_Polypath - set_PolypathRule - set_ReplCRS_warn - set_alias - set_attrs - set_callback - set_chr_encoding - set_col_regions - set_colnames - set_config - set_config_in - set_cookies - set_env - set_expr - set_header - set_hooks - set_ll_TOL - set_ll_warn - set_names - set_parent - set_rownames - set_str_encoding - set_tidy_names - setattr - setattributes - setcolorder - setdiff - setdiff.Vector - setdiff.nb - setequal - setequal.Vector - setindex - setindexv - setkey - setkeyv - setnames - setorder - setorderv - setwd - shQuote - shQuoteIfNeeded - sha1 - sha1_hash - sha2 - sha224 - sha256 - sha384 - sha512 - shape_pal - shapiro.test - shardsplot - sheetCount - sheetNames - shellorder - shellsort - shellsortorder - shift - shiftApply - shingle - shinyRenderWidget - shinyWidgetOutput - ships - shoes - shouldPrint - should_stop - show - show.settings - showAsCell - showClass - showConnections - showDefault - showDialog - showExtends - showGrob - showMethods - showMlist - showNonASCII - showNonASCIIfile - showPrompt - showQCData - showQuestion - showTree - showViewport - show_ansi_colors - show_col - shrimp - shuttle - sigToEnv - sigma - sigmoid - sign - signTabulate - sign_oauth1.0 - sign_oauth2.0 - signalCondition - signature - signature_create - signature_verify - signif - silhouette - silver - sim2jam - simcontour - similar.listw - similarity - simpleCondition - simpleError - simpleKey - simpleMessage - simpleSmoothTs - simpleTheme - simpleWarning - simplex - simplify2array - simulate - simulate.lme - simulation.model - sin - sinRepAmmi - singer - single - single_quote - singleton - sinh - sink - sink.number - sinkWorkerOutput - sinkplot - sinpi - sir - sizeDiss - sizeFactors - sizeof - sizingPolicy - skater - skewness - skewpart - sknn - slanczos - slaveLoop - sleep - slice - slice.index - slidingIRanges - slidingViews - slidingWindows - slot - slotNames - slotsFromS3 - sluggerdata - smartbind - smartlegend - smartypants - smiths - smooth - smooth.construct - smooth.construct.ad.smooth.spec - smooth.construct.bs.smooth.spec - smooth.construct.cc.smooth.spec - smooth.construct.cp.smooth.spec - smooth.construct.cr.smooth.spec - smooth.construct.cs.smooth.spec - smooth.construct.ds.smooth.spec - smooth.construct.gp.smooth.spec - smooth.construct.mrf.smooth.spec - smooth.construct.ps.smooth.spec - smooth.construct.re.smooth.spec - smooth.construct.sf.smooth.spec - smooth.construct.so.smooth.spec - smooth.construct.sos.smooth.spec - smooth.construct.sw.smooth.spec - smooth.construct.t2.smooth.spec - smooth.construct.tensor.smooth.spec - smooth.construct.tp.smooth.spec - smooth.construct.ts.smooth.spec - smooth.construct2 - smooth.f - smooth.spline - smooth2random - smoothCon - smoothEnds - smoothScatter - sn2listw - snails - snip.rpart - snow - snow.time - snpCall - snpCallProbability - soccergoals - socketConnection - socketSelect - soi.graph - soil - solder - solve - solve.default - solve.qr - solveUserSEW - solveUserSEW0 - somgrid - sort - sort.GenomicRanges - sort.POSIXlt - sort.Vector - sort.default - sort.int - sort.list - sortSeqlevels - sortSilhouette - sortedXyData - source - sourceCpp - sourceMarkers - sourcetools - sp - sp.correlogram - sp.grid - sp.lines - sp.mantel.mc - sp.panel.layout - sp.plot - sp.points - sp.polygons - sp.text - sp.theme - sp.vcov - spBreg_lag - spChFIDs - spData - spDists - spDistsN1 - spMatrix - spNamedVec - spTransform - space - spam_setup - spam_update_setup - span - sparks - sparse.model.matrix - sparseM2Graph - sparseMatrix - sparseVector - spasm.construct - spasm.smooth - spasm.sp - spatial - spautolm - spdep - spec.ar - spec.pgram - spec.taper - specData - species - speciesMap - specplot - spectra - spectrum - spectrum0 - spectrum0.ar - sphercov - spin - spin_child - spineplot - splat - splice - spline - spline.des - splineDesign - splineKnots - splineOrder - splinefun - splinefunH - splines - split - split.Date - split.DelayedArray - split.POSIXct - split.data.frame - split.default - split.screen - splitAsList - splitCols - splitFormula - splitIndices - splitLines4Table - splitList - splitRanges - splitRows - split_indices - split_labels - splitstackshape - splom - spmap.to.lev - sppanel - spplot - spplot.key - spplot.locator - sprint - sprintf - spsample - spweights.constants - sqlAppendTable - sqlAppendTableTemplate - sqlColumnToRownames - sqlCommentSpec - sqlCreateTable - sqlData - sqlInterpolate - sqlParseVariables - sqlParseVariablesImpl - sqlQuoteSpec - sqlRownamesToColumn - sqliteBuildTableDefinition - sqliteCopyDatabase - sqliteQuickColumn - sqrt - sqrt_trans - sqrtm - squash - squash_chr - squash_cpl - squash_dbl - squash_if - squash_int - squash_lgl - squash_raw - squeeze - squish - squish_infinite - srPhiX174 - srcfile - srcfilealias - srcfilecopy - srcref - ssp.plot - ssw - stability.nonpar - stability.par - stack - stackStrings - stack_trim - stackloss - stagec - standard.theme - standardChromosomes - standardGeneric - stanford2 - stanfordheart - stars - stars.pval - start - startDynamicHelp - startElement.SAX - startIndex - startsWith - stat.anova - stat.freq - stat_bin - stat_bin2d - stat_bin_2d - stat_bin_hex - stat_binhex - stat_boxplot - stat_contour - stat_count - stat_density - stat_density2d - stat_density_2d - stat_ecdf - stat_ellipse - stat_function - stat_identity - stat_qq - stat_quantile - stat_smooth - stat_spoke - stat_sum - stat_summary - stat_summary2d - stat_summary_2d - stat_summary_bin - stat_summary_hex - stat_unique - stat_ydensity - state.vbm - statefig - staticClusterApply - stats - stats4 - status_code - stderr - stdin - stdout - stdres - steam - stem - step - stepAIC - stepclass - stepfun - stft - still.identical - stitch - stitch_rhtml - stitch_rmd - stl - stop - stopCluster - stopCluster.MPIcluster - stopCluster.NWScluster - stopCluster.default - stopCluster.spawnedMPIcluster - stopNode - stop_for_status - stopifnot - storage.mode - storageMode - stormer - str - strOptions - str_c - str_conv - str_count - str_detect - str_dup - str_encoding - str_extract - str_extract_all - str_flatten - str_glue - str_glue_data - str_interp - str_length - str_locate - str_locate_all - str_match - str_match_all - str_order - str_pad - str_remove - str_remove_all - str_replace - str_replace_all - str_replace_na - str_sort - str_split - str_split_fixed - str_squish - str_sub - str_subset - str_to_lower - str_to_title - str_to_upper - str_trim - str_trunc - str_view - str_view_all - str_which - str_wrap - strand - strata - stratified - strbreak - strcapture - stream_in - stream_out - strftime - strheight - stri_c - stri_c_list - stri_cmp - stri_cmp_eq - stri_cmp_equiv - stri_cmp_ge - stri_cmp_gt - stri_cmp_le - stri_cmp_lt - stri_cmp_neq - stri_cmp_nequiv - stri_compare - stri_conv - stri_count - stri_count_boundaries - stri_count_charclass - stri_count_coll - stri_count_fixed - stri_count_regex - stri_count_words - stri_datetime_add - stri_datetime_create - stri_datetime_fields - stri_datetime_format - stri_datetime_fstr - stri_datetime_now - stri_datetime_parse - stri_datetime_symbols - stri_detect - stri_detect_charclass - stri_detect_coll - stri_detect_fixed - stri_detect_regex - stri_dup - stri_duplicated - stri_duplicated_any - stri_enc_detect - stri_enc_detect2 - stri_enc_fromutf32 - stri_enc_get - stri_enc_info - stri_enc_isascii - stri_enc_isutf16be - stri_enc_isutf16le - stri_enc_isutf32be - stri_enc_isutf32le - stri_enc_isutf8 - stri_enc_list - stri_enc_mark - stri_enc_set - stri_enc_toascii - stri_enc_tonative - stri_enc_toutf32 - stri_enc_toutf8 - stri_encode - stri_endswith - stri_endswith_charclass - stri_endswith_coll - stri_endswith_fixed - stri_escape_unicode - stri_extract - stri_extract_all - stri_extract_all_boundaries - stri_extract_all_charclass - stri_extract_all_coll - stri_extract_all_fixed - stri_extract_all_regex - stri_extract_all_words - stri_extract_first - stri_extract_first_boundaries - stri_extract_first_charclass - stri_extract_first_coll - stri_extract_first_fixed - stri_extract_first_regex - stri_extract_first_words - stri_extract_last - stri_extract_last_boundaries - stri_extract_last_charclass - stri_extract_last_coll - stri_extract_last_fixed - stri_extract_last_regex - stri_extract_last_words - stri_flatten - stri_info - stri_isempty - stri_join - stri_join_list - stri_length - stri_list2matrix - stri_locale_get - stri_locale_info - stri_locale_list - stri_locale_set - stri_locate - stri_locate_all - stri_locate_all_boundaries - stri_locate_all_charclass - stri_locate_all_coll - stri_locate_all_fixed - stri_locate_all_regex - stri_locate_all_words - stri_locate_first - stri_locate_first_boundaries - stri_locate_first_charclass - stri_locate_first_coll - stri_locate_first_fixed - stri_locate_first_regex - stri_locate_first_words - stri_locate_last - stri_locate_last_boundaries - stri_locate_last_charclass - stri_locate_last_coll - stri_locate_last_fixed - stri_locate_last_regex - stri_locate_last_words - stri_match - stri_match_all - stri_match_all_regex - stri_match_first - stri_match_first_regex - stri_match_last - stri_match_last_regex - stri_numbytes - stri_opts_brkiter - stri_opts_collator - stri_opts_fixed - stri_opts_regex - stri_order - stri_pad - stri_pad_both - stri_pad_left - stri_pad_right - stri_paste - stri_paste_list - stri_rand_lipsum - stri_rand_shuffle - stri_rand_strings - stri_read_lines - stri_read_raw - stri_replace - stri_replace_all - stri_replace_all_charclass - stri_replace_all_coll - stri_replace_all_fixed - stri_replace_all_regex - stri_replace_first - stri_replace_first_charclass - stri_replace_first_coll - stri_replace_first_fixed - stri_replace_first_regex - stri_replace_last - stri_replace_last_charclass - stri_replace_last_coll - stri_replace_last_fixed - stri_replace_last_regex - stri_replace_na - stri_reverse - stri_sort - stri_split - stri_split_boundaries - stri_split_charclass - stri_split_coll - stri_split_fixed - stri_split_lines - stri_split_lines1 - stri_split_regex - stri_startswith - stri_startswith_charclass - stri_startswith_coll - stri_startswith_fixed - stri_stats_general - stri_stats_latex - stri_sub - stri_subset - stri_subset_charclass - stri_subset_coll - stri_subset_fixed - stri_subset_regex - stri_timezone_get - stri_timezone_info - stri_timezone_list - stri_timezone_set - stri_trans_char - stri_trans_general - stri_trans_isnfc - stri_trans_isnfd - stri_trans_isnfkc - stri_trans_isnfkc_casefold - stri_trans_isnfkd - stri_trans_list - stri_trans_nfc - stri_trans_nfd - stri_trans_nfkc - stri_trans_nfkc_casefold - stri_trans_nfkd - stri_trans_tolower - stri_trans_totitle - stri_trans_toupper - stri_trim - stri_trim_both - stri_trim_left - stri_trim_right - stri_unescape_unicode - stri_unique - stri_width - stri_wrap - stri_write_lines - strikeout - strikethrough - string - stringAscent - stringDescent - stringDist - stringHeight - stringWidth - stringi - stringr - strip.custom - strip.default - strip.plot - strip_splits - strip_style - stripchart - stripplot - strmacro - strong - strptime - strrep - strsplit - strsplitAsListOfIntegerVectors - strtoi - strtrim - structure - strwidth - strwrap - stsls - studentdata - studres - sturges.freq - style - style_bold - style_na - style_neg - style_num - style_subtle - styles - sub - subGraph - subListExtract - subgraph_eigenw - subject - subjectHits - subjectLength - subpatterns - subseq - subset - subset.data.frame - subset.default - subset.listw - subset.matrix - subset.nb - subsetByFilter - subsetByOverlaps - subsetEdgeSets - subset_seed_as_array - substitute - substituteDirect - substituteFunctionArgs - substr - substring - subtract - subtractDependencies - subviews - successiveIRanges - successiveViews - sum - sum.bit - sum.bitwhich - sum.ri - sum2 - sumOver - sumexact - summarise - summarize - summarize_CRAN_check_status - summarize_check_packages_in_dir_depends - summarize_check_packages_in_dir_results - summarize_check_packages_in_dir_timings - summary - summary.Date - summary.GenomicRanges - summary.POSIXct - summary.POSIXlt - summary.Rle - summary.Seqinfo - summary.aov - summary.bayes - summary.bit - summary.bitwhich - summary.connection - summary.data.frame - summary.default - summary.factor - summary.gam - summary.glh.test - summary.glm - summary.gmsar - summary.graph.freq - summary.listw - summary.lm - summary.localmoransad - summary.manova - summary.matrix - summary.moransad - summary.nb - summary.proc_time - summary.ri - summary.sarlm - summary.spautolm - summary.srcfile - summary.srcref - summary.stepfun - summary.stsls - summary.table - summaryRprof - sunflowerplot - sunspot.month - sunspot.year - sunspots - superClassDepth - supportedFilters - supportedRealizationBackends - supportsExpat - supportsLibxml - suppressDependencies - suppressForeignCheck - suppressMessages - suppressPackageStartupMessages - suppressWarnings - supsmu - surf.gls - surf.ls - surfaceArea - surroundSingletons - survConcordance - survConcordance.fit - survSplit - survdiff - survexp - survey - survfit - survfit.formula - survfitCI - survfitKM - survfitcoxph.fit - survival - survobrien - survpenal.fit - survreg - survreg.control - survreg.distributions - survreg.fit - survregDtest - svd - svg - svm - svmlight - svn.time - sweep - sweetpotato - swiss - switch - switch_class - switch_lang - switch_type - sym - sym.attr.nb - symbol - symbols - symmpart - symnum - syms - synth.te - synth.tr - sys.call - sys.calls - sys.frame - sys.frames - sys.function - sys.load.image - sys.nframe - sys.on.exit - sys.parent - sys.parents - sys.save.image - sys.source - sys.status - system - system.file - system.time - system2 - t - t.Hits - t.HitsList - t.data.frame - t.default - t.test - t2 - t_tx_OP_y - table - table.freq - tableGrob - tables - tabulate - tag - tagAppendAttributes - tagAppendChild - tagAppendChildren - tagGetAttribute - tagHasAttribute - tagList - tagSetChildren - tagname - tags - tail - tail.DataTable - tail.LLint - tail.Vector - tail.matrix - take - takeSingletons - tan - tanh - tanpi - tapply - tapply.stat - tar - taskCallbackManager - tau - taxonomyId - tb - tb.width - tblNoLast - tblNoNext - tbl_sum - tcl - tclArray - tclObj - tclRequire - tclServiceMode - tclVar - tclVersion - tclclose - tclfile.dir - tclfile.tail - tclopen - tclputs - tclread - tcltk - tclvalue - tclvar - tcrossprod - tcut - te - tempdir - tempfile - tensor.prod.model.matrix - tensor.prod.penalties - terminalActivate - terminalBuffer - terminalBusy - terminalClear - terminalContext - terminalCreate - terminalExecute - terminalExitCode - terminalKill - terminalList - terminalRunning - terminalSend - terminalVisible - termplot - terms - terms.formula - terrain.colors - terrain_hcl - test.data.table - testBioCConnection - testForValidKeytype - testInheritedMethods - testInstalledBasic - testInstalledPackage - testInstalledPackages - testPlatformEquivalence - testSelectArgs - testVirtual - texi2dvi - texi2pdf - text - text.SAX - text.default - textConnection - textConnectionValue - textGrob - text_colour - text_content - textplot - thayer - theEconomist.axis - theEconomist.opts - theEconomist.theme - theme - theme_bw - theme_classic - theme_dark - theme_get - theme_gray - theme_grey - theme_light - theme_linedraw - theme_minimal - theme_replace - theme_set - theme_update - theme_void - theta.md - theta.ml - theta.mm - thin - threebands - threshold - ti - tibble - tibble_ - tic - tidyHtmlTable - tidy_names - tiff - tile - tile.centroids - tile.list - tileGenome - tileInfo - tilePerim - tilePerim0 - tileplot - tilt.boot - time - time_ago - time_trans - timeout - timestamp - timetaken - tips - title - tkProgressBar - tkStartGUI - tkXselection.clear - tkXselection.get - tkXselection.handle - tkXselection.own - tk_choose.dir - tk_choose.files - tk_messageBox - tk_select.list - tkactivate - tkadd - tkaddtag - tkbbox - tkbell - tkbind - tkbindtags - tkbutton - tkcanvas - tkcanvasx - tkcanvasy - tkcget - tkcheckbutton - tkchooseDirectory - tkclipboard.append - tkclipboard.clear - tkcompare - tkconfigure - tkcoords - tkcreate - tkcurselection - tkdchars - tkdebug - tkdelete - tkdelta - tkdeselect - tkdestroy - tkdialog - tkdlineinfo - tkdtag - tkdump - tkentry - tkentrycget - tkentryconfigure - tkevent.add - tkevent.delete - tkevent.generate - tkevent.info - tkfind - tkflash - tkfocus - tkfont.actual - tkfont.configure - tkfont.create - tkfont.delete - tkfont.families - tkfont.measure - tkfont.metrics - tkfont.names - tkfraction - tkframe - tkget - tkgetOpenFile - tkgetSaveFile - tkgettags - tkgrab - tkgrab.current - tkgrab.release - tkgrab.set - tkgrab.status - tkgrid - tkgrid.bbox - tkgrid.columnconfigure - tkgrid.configure - tkgrid.forget - tkgrid.info - tkgrid.location - tkgrid.propagate - tkgrid.remove - tkgrid.rowconfigure - tkgrid.size - tkgrid.slaves - tkicursor - tkidentify - tkimage.create - tkimage.delete - tkimage.height - tkimage.inuse - tkimage.names - tkimage.type - tkimage.types - tkimage.width - tkindex - tkinsert - tkinvoke - tkitembind - tkitemcget - tkitemconfigure - tkitemfocus - tkitemlower - tkitemraise - tkitemscale - tklabel - tklistbox - tklower - tkmark.gravity - tkmark.names - tkmark.next - tkmark.previous - tkmark.set - tkmark.unset - tkmenu - tkmenubutton - tkmessage - tkmessageBox - tkmove - tknearest - tkpack - tkpack.configure - tkpack.forget - tkpack.info - tkpack.propagate - tkpack.slaves - tkpager - tkplace - tkplace.configure - tkplace.forget - tkplace.info - tkplace.slaves - tkpopup - tkpost - tkpostcascade - tkpostscript - tkradiobutton - tkraise - tkscale - tkscan.dragto - tkscan.mark - tkscrollbar - tksearch - tksee - tkselect - tkselection.adjust - tkselection.anchor - tkselection.clear - tkselection.from - tkselection.includes - tkselection.present - tkselection.range - tkselection.set - tkselection.to - tkset - tksize - tktag.add - tktag.bind - tktag.cget - tktag.configure - tktag.delete - tktag.lower - tktag.names - tktag.nextrange - tktag.prevrange - tktag.raise - tktag.ranges - tktag.remove - tktext - tktitle - tktoggle - tktoplevel - tktype - tkunpost - tkwait.variable - tkwait.visibility - tkwait.window - tkwidget - tkwindow.cget - tkwindow.configure - tkwindow.create - tkwindow.names - tkwinfo - tkwm.aspect - tkwm.client - tkwm.colormapwindows - tkwm.command - tkwm.deiconify - tkwm.focusmodel - tkwm.frame - tkwm.geometry - tkwm.grid - tkwm.group - tkwm.iconbitmap - tkwm.iconify - tkwm.iconmask - tkwm.iconname - tkwm.iconposition - tkwm.iconwindow - tkwm.maxsize - tkwm.minsize - tkwm.overrideredirect - tkwm.positionfrom - tkwm.protocol - tkwm.resizable - tkwm.sizefrom - tkwm.state - tkwm.title - tkwm.transient - tkwm.withdraw - tkxview - tkxview.moveto - tkxview.scroll - tkyposition - tkyview - tkyview.moveto - tkyview.scroll - tli - tmd - tmerge - to - toBibtex - toComplex - toDotR - toDotWithRI - toGXL - toHTML - toJSON - toLatex - toLatex.xtable - toRd - toSQLStringSet - toString - toString.XMLNode - toString.default - toTable - toTitleCase - tobin - toeplitz - toggleProbes - togroup - togrouplength - togrouprank - tokenize - tokenize_file - tokenize_string - tolerance.nb - tolower - tools - topenv - topo - topo.colors - totalPenaltySpace - toupper - trW - trace - traceOff - traceOn - traceback - tracemem - traceplot - tracingState - train_continuous - train_discrete - trans3d - trans_breaks - trans_format - trans_new - trans_range - transform - transform.data.frame - transform.default - transform_position - translate - transplant - transplantpost - transpose - trapz - tree - treering - trees - trellis.currentLayout - trellis.device - trellis.focus - trellis.grobname - trellis.last.object - trellis.panelArgs - trellis.par.get - trellis.par.set - trellis.switchFocus - trellis.unfocus - trellis.vpname - tri2nb - triMat - triang.list - tribble - trichol - triframe - trigamma - trigrid - tril - trilines - trim - trimLRPatterns - trimSum - trimws - trind.generator - trinucleotideFrequency - triperplines - triplot - tripoints - tritrafo - triu - trls.influence - trmat - true - truehist - truelength - trunc - trunc.Date - trunc.POSIXt - trunc_mat - truncate - truncate.connection - try - tryCatch - tryNULL - tryNew - try_capture_stack - try_default - tryapply - ts - ts.intersect - ts.plot - ts.union - tsSmooth - tsboot - tsdiag - tsp - tstrsplit - tsum.test - ttheme_default - ttheme_minimal - ttkbutton - ttkcheckbutton - ttkcombobox - ttkentry - ttkframe - ttklabel - ttklabelframe - ttkmenubutton - ttknotebook - ttkpanedwindow - ttkprogressbar - ttkradiobutton - ttkscale - ttkscrollbar - ttkseparator - ttksizegrip - ttkspinbox - ttktreeview - tuna - tune - tune.control - tune.knn - tune.nnet - tune.randomForest - tune.rpart - tune.svm - tw - twitter_spambots - twoWayAlphabetFrequency - txhousing - txtInt - txtMergeLines - txtProgressBar - txtPval - txtRound - type - type.convert - type_of - type_sum - typeof - ucpm - ucv - ugraph - ugraphOld - unByteCode - unByteCodeAssign - unRematchDefinition - unaligned - unattr - unbox - unclass - undebug - undebug.all - undebug.lr - undebug_fseq - undebugcall - underline - undoc - union - union.Vector - union.nb - uniqTsparse - unique - unique.DataTable - unique.POSIXlt - unique.Vector - unique.array - unique.data.frame - unique.default - unique.matrix - unique.numeric_version - unique.rlepack - unique.warnings - uniqueLetters - uniqueN - uniquecombs - uniroot - unit - unit.c - unit.length - unit.pmax - unit.pmin - unit.rep - unitScale - unit_format - unitigs - units - units.difftime - universe - unix.time - unknownToNA - unlink - unlist - unlist2 - unlist_list_of_XVectorList - unloadNamespace - unlockBinding - unmasked - unmatrix - unname - unpack - unrowname - unserialize - unserializeJSON - unsplit - unsplit_list_of_XVectorList - unstack - unstrand - unstrsplit - untangle.specials - untar - untrace - untracemem - unz - unzip - upViewport - update - update.default - update.formula - update.list - update.packageStatus - update.packages - updateDialog - updateGraph - updateObject - updateObjectFromSlots - updateObjectTo - updateOldESet - updateOptions - updateOptions.character - updateOptions.default - update_geom_defaults - update_labels - update_pkg_po - update_stat_defaults - updown - upgrade - upload_file - upper.to.lower.tri.inds - upper.tri - upperTriangle - uppertriangle - uq - uqf - uqs - urban_agglomerations - urine - url - url.exists - url.show - urlEncodePath - url_ok - url_success - us_states - us_states_df - useDataset - useDevel - useEnsembl - useMart - useOuterStrips - use_proxy - use_series - used.cars - userQuery - user_agent - uspop - uspop2 - utf8 - utf8ToInt - utf8_encode - utf8_format - utf8_normalize - utf8_print - utf8_valid - utf8_width - utils - v1_ggmatrix_theme - vaggregate - vague_dt - valid.just - validDetails - validEnc - validGraph - validMsg - validObject - validSlotNames - validTaxIds - validUTF8 - validate - validateCssUnit - validateGXL - validateIndices - validate_that - value - value_slice - values - vapply - var - var.linear - var.test - varComb - varConstPower - varDiff - varExp - varFixed - varFunc - varIdent - varLabels - varMetadata - varPower - varWeights - variable.names - varimax - variogram - vark - varnames - vcountPDict - vcountPattern - vcov - vcov.gam - vcov.sarlm - vec_poke_n - vec_poke_range - vecseq - vector - venn - verbose - verifyAvailable - version - versionInfo - veteran - vi - vi2mrc - viewApply - viewMaxs - viewMeans - viewMins - viewRangeMaxs - viewRangeMins - viewSums - viewWhichMaxs - viewWhichMins - viewer - viewport - viewport.layout - viewport.transform - vignette - vignetteDepends - vignetteEngine - viridis - viridis.map - viridisLite - viridis_pal - virtual - virtual.default - vis.gam - vmatchPDict - vmatchPattern - vmembers - volcano - volume - votes.repub - vpList - vpPath - vpStack - vpTree - vwhichPDict - waders - waerden.test - waiver - walkCode - waller - waller.test - wapply - warn - warn_for_status - warning - warning_cnd - warnings - warpbreaks - wday - weatherSeverity - week - weekdays - weekdays.Date - weekdays.POSIXt - weibullregpost - weighted.mean - weighted.residuals - weightedMad - weightedMean - weightedMedian - weightedSd - weightedVar - weights - wheat - which - which.debug - which.is.max - which.isMatchingAt - which.isMatchingEndingAt - which.isMatchingStartingAt - which.max - which.min - which.packet - which.tile - whichAsIRanges - whichFirstNotNormal - whichPDict - white - whiteside - wideByFactor - width - width.SJ - width0 - widthDetails - wilcox.test - wilkinson - wilt - window - window.LLint - window.Vector - wireframe - with - with.default - withAutoprint - withCallingHandlers - withRestarts - withTags - withVisible - with_bindings - with_config - with_env - with_handlers - with_options - with_restarts - with_verbose - within - within.data.frame - within.list - wmsg - woe - women - wool - word - words - world - worldbank_df - wrap - wrap_dims - wrap_fn_with_param_arg - wrap_fn_with_params - wrap_format - wrap_rmd - wrapp - write - write.AnnotatedDataFrame - write.ENVI - write.arff - write.asciigrid - write.csv - write.csv2 - write.dbf - write.dcf - write.dta - write.exprs - write.foreign - write.ftable - write.fwf - write.gif - write.matrix - write.matrix.csr - write.nb.gal - write.phylip - write.sn2dat - write.sn2gwt - write.socket - write.svm - write.table - writeBin - writeChar - writeLines - writeMM - writeMSData - writePairwiseAlignments - writePreference - writeXStringSet - write_PACKAGES - write_array_to_sink - write_bib - write_block_to_sink - write_der - write_disk - write_function - write_json - write_memory - write_p12 - write_p7b - write_pem - write_pkcs1 - write_ssh - write_stream - write_yaml - writehex - wtloss - x11 - x2u - xDetails - x_OP_y - xalign - xaxisGrob - xclara - xdigits - xdisplay - xedit - xemacs - xfig - xgettext - xgettext2pot - xinch - xlab - xlim - xls2csv - xls2sep - xls2tab - xls2tsv - xlsFormats - xml - xmlAncestors - xmlApply - xmlAttributeType - xmlAttrs - xmlCDataNode - xmlChildren - xmlCleanNamespaces - xmlClone - xmlCodeFile - xmlCommentNode - xmlContainsElement - xmlContainsEntity - xmlDOMApply - xmlDeserializeHook - xmlDoc - xmlElementSummary - xmlElementsByTagName - xmlErrorCumulator - xmlEventHandler - xmlEventParse - xmlGetAttr - xmlHandler - xmlHashTree - xmlInternalTreeParse - xmlName - xmlNamespace - xmlNamespaceDefinitions - xmlNamespaces - xmlNativeTreeParse - xmlNode - xmlOutputBuffer - xmlOutputDOM - xmlPINode - xmlParent - xmlParse - xmlParseDoc - xmlParseString - xmlParserContextFunction - xmlRoot - xmlSApply - xmlSchemaParse - xmlSchemaValidate - xmlSearchNs - xmlSerializeHook - xmlSize - xmlSize.default - xmlSource - xmlSourceFunctions - xmlSourceSection - xmlStopParser - xmlStructuredStop - xmlTextNode - xmlToDataFrame - xmlToList - xmlToS4 - xmlTree - xmlTreeParse - xmlValue - xmlXIncludes - xngettext - xor - xor.bit - xor.bitwhich - xor.default - xor.hexmode - xor.octmode - xpathApply - xpathSApply - xpdrows.data.frame - xpred.rpart - xscale.components.default - xscale.components.fractions - xscale.components.log - xscale.components.log10.3 - xscale.components.log10ticks - xscale.components.logpower - xscale.components.subticks - xscat - xsimplex - xspline - xsplineGrob - xsplinePoints - xtable - xtableFtable - xtableLSMeans - xtableList - xtableMatharray - xtabs - xtfrm - xtfrm.AsIs - xtfrm.Date - xtfrm.POSIXct - xtfrm.POSIXlt - xtfrm.Surv - xtfrm.default - xtfrm.difftime - xtfrm.factor - xtfrm.numeric_version - xvcopy - xy.coords - xyTable - xyVector - xyinch - xyplot - xyplot.list - xyplot.ts - xyz.coords - xzfile - yDetails - yacon - yaml - yaml.load - yaml.load_file - yaxisGrob - yday - year - yeastSEQCHR1 - yellow - yinch - ylab - ylim - yscale.components.default - yscale.components.fractions - yscale.components.log - yscale.components.log10.3 - yscale.components.log10ticks - yscale.components.logpower - yscale.components.subticks - z.test - zapsmall - zeroGrob - zero_range - zerodist - zerodist2 - ziP - zigzag - zip - zipdown - ziplss - zipup - zlibbioc - zsum.test - - - \ No newline at end of file diff --git a/.idea/libraries/R_User_Library.xml b/.idea/libraries/R_User_Library.xml deleted file mode 100644 index 71f5ff74..00000000 --- a/.idea/libraries/R_User_Library.xml +++ /dev/null @@ -1,6 +0,0 @@ - - - - - - \ No newline at end of file diff --git a/.idea/misc.xml b/.idea/misc.xml deleted file mode 100644 index 4260ce87..00000000 --- a/.idea/misc.xml +++ /dev/null @@ -1,4 +0,0 @@ - - - - \ No newline at end of file diff --git a/.idea/modules.xml b/.idea/modules.xml deleted file mode 100644 index 25dd3219..00000000 --- a/.idea/modules.xml +++ /dev/null @@ -1,8 +0,0 @@ - - - - - - - - \ No newline at end of file diff --git a/.idea/vcs.xml b/.idea/vcs.xml deleted file mode 100644 index 94a25f7f..00000000 --- a/.idea/vcs.xml +++ /dev/null @@ -1,6 +0,0 @@ - - - - - - \ No newline at end of file diff --git a/.idea/workspace.xml b/.idea/workspace.xml deleted file mode 100644 index 7d4a47b4..00000000 --- a/.idea/workspace.xml +++ /dev/null @@ -1,943 +0,0 @@ - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - catT - transform_name - exon_cds_count - evm_ - cattw - uniq_ - gt_gff3 - GT_GFF3 - uniq - uniq_id - genename - final_output - GT_RETAINID - samto - final_files.append - genename_last - appen - mapping.change_chr - output_dir - final_output_dir - hmm - braker - out_filename - long_fasta - exon - transform_cds - exone - gmap - temp - minima - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -