Easyconfigs merge sprint 20150603

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Kenneth Hoste edited this page Jun 2, 2015 · 29 revisions

People

Name	Affiliation	Location	GitHub	IRC
Balazs	VUB	.be	@hajgato	vschajgato
Bart	VUB	.be	@Bart-CER	?
Fotis	freelance	.be/.uk	@fgeorgatos	fotis*
Kenneth	HPC-UGent	.be	@boegel	boegel
Lumír	VSB	.cz	@jas02	jas02
Markus	JSC	.de	@geimer	geimer
Pablo	SIB	.ch	@pescobar	pescobar
Robert	OHRI	.ca	@rjeschmi	rjeschmi
Thekla	CyI	.cy	@tloizou	?

Timetable

Slot (CET)	People
8am - 9am	Balazs
9am - 10am	Balazs, Kenneth, Lumír, Pablo
10am - 11am	Balazs, Kenneth, Lumír, Pablo, Thekla
11am - 12pm	Balazs, Kenneth, Lumír, Thekla
12pm - 1pm	Balazs, Kenneth, Lumír, Markus, Thekla
1pm - 2pm	Balazs, Fotis, Kenneth, Lumír, Markus, Thekla
2pm - 3pm	Balazs, Fotis, Kenneth, Lumír, Markus, Robert
3pm - 4pm	Balazs, Fotis, Kenneth, Lumír, Robert
4pm - 5pm	Balazs, Fotis, Kenneth, Lumír, Pablo, Robert
5pm - 6pm	Fotis, Kenneth, Pablo, Robert
6pm - 7pm	Fotis, (Kenneth)
7pm - 8pm	Fotis, ~~Kenneth~~
8pm - 9pm	Kenneth
9pm - 10pm	Kenneth
10pm - 11pm	Kenneth

Tasks

merging PRs: Kenneth
test reports: Balazs, Robert, (Kenneth)
reviewing: Balazs, Fotis, Robert
make own PRs eligible: Bart, Balazs, Markus, Lumir, Pablo, Robert, Thekla

PRs of interest

Balazs

https://github.com/hpcugent/easybuild-easyconfigs/pulls/hajgato

low-hanging fruit:

~~PostgreSQL (https://github.com/hpcugent/easybuild-easyconfigs/pull/1066)~~
CUDA (https://github.com/hpcugent/easybuild-easyconfigs/pull/1087)
Unison (https://github.com/hpcugent/easybuild-easyconfigs/pull/1128)
ncdf (https://github.com/hpcugent/easybuild-easyconfigs/pull/1185)
~~NWChem (https://github.com/hpcugent/easybuild-easyconfigs/pull/1188)~~
HTSeq (https://github.com/hpcugent/easybuild-easyconfigs/pull/1195)
DEXSeq R package (https://github.com/hpcugent/easybuild-easyconfigs/pull/1204)
Circuitscape (https://github.com/hpcugent/easybuild-easyconfigs/pull/1222)
netCDF (https://github.com/hpcugent/easybuild-easyconfigs/pull/1433)
GLPK (https://github.com/hpcugent/easybuild-easyconfigs/pull/1499)
~~HMMER (https://github.com/hpcugent/easybuild-easyconfigs/pull/1575)~~

difficult ones:

Chombo and BISICLES (https://github.com/hpcugent/easybuild-easyconfigs/pull/1053)
- requires https://github.com/hpcugent/easybuild-easyblocks/pull/464
OpenFOAM (https://github.com/hpcugent/easybuild-easyconfigs/pull/1166)
- requires https://github.com/hpcugent/easybuild-easyblocks/pull/494 and https://github.com/hpcugent/easybuild-easyblocks/pull/497
wxPython (https://github.com/hpcugent/easybuild-easyconfigs/pull/1223)
GATE, Geant4, ROOT, CLHEP (https://github.com/hpcugent/easybuild-easyconfigs/pull/1439)
Mesa (https://github.com/hpcugent/easybuild-easyconfigs/pull/1618)
requires eudev (https://github.com/hpcugent/easybuild-easyconfigs/pull/1578) and LLVM-core (https://github.com/hpcugent/easybuild-easyconfigs/pull/1620)
sort of related: https://github.com/hpcugent/easybuild-easyconfigs/pull/1226

Fotis

https://github.com/hpcugent/easybuild-easyconfigs/pulls/fgeorgatos

life sciences, bioinformatics; PRs by Thekla, Pablo

Kenneth

https://github.com/hpcugent/easybuild-easyconfigs/pulls/boegel

QIIME-related PRs

OCaml/pplacer: https://github.com/hpcugent/easybuild-easyconfigs/pull/1056
QIIME + deps: https://github.com/hpcugent/easybuild-easyconfigs/pull/1057

Markus

https://github.com/hpcugent/easybuild-easyconfigs/pulls/geimer

Vampir: https://github.com/hpcugent/easybuild-easyconfigs/pull/512
Score-P: https://github.com/hpcugent/easybuild-easyconfigs/pull/1026
Scalasca + deps: https://github.com/hpcugent/easybuild-easyconfigs/pull/1375
JUBE: https://github.com/hpcugent/easybuild-easyconfigs/pull/1396

Pablo

https://github.com/hpcugent/easybuild-easyconfigs/pulls/pescobar

MOSAIK (https://github.com/hpcugent/easybuild-easyconfigs/pull/880)
PBZIP2 (https://github.com/hpcugent/easybuild-easyconfigs/pull/1038)
Bioperl (https://github.com/hpcugent/easybuild-easyconfigs/pull/1075)
Pindel (https://github.com/hpcugent/easybuild-easyconfigs/pull/1126)
Rpy2 (https://github.com/hpcugent/easybuild-easyconfigs/pull/1149)
Trinity (https://github.com/hpcugent/easybuild-easyconfigs/pull/1427)
TopHat (https://github.com/hpcugent/easybuild-easyconfigs/pull/1476)
MuTect (https://github.com/hpcugent/easybuild-easyconfigs/pull/1483)
PyMOL/GLEW (https://github.com/hpcugent/easybuild-easyconfigs/pull/1405)

Robert

https://github.com/hpcugent/easybuild-easyconfigs/pulls/rjeschmi

Thekla

https://github.com/hpcugent/easybuild-easyconfigs/pulls/tloizou

~~pBWA (https://github.com/hpcugent/easybuild-easyconfigs/pull/1009)~~
MAT I/O (https://github.com/hpcugent/easybuild-easyconfigs/pull/1004)
DendroPy (https://github.com/hpcugent/easybuild-easyconfigs/pull/995)
ABINIT (https://github.com/hpcugent/easybuild-easyconfigs/pull/727, https://github.com/hpcugent/easybuild-easyconfigs/pull/989)
- note (@boegel): should be checked against https://github.com/hpcugent/easybuild-easyconfigs/pull/1551 (and https://github.com/hpcugent/easybuild-easyconfigs/pull/1650)
Bismark (https://github.com/hpcugent/easybuild-easyconfigs/pull/990)

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