From 8780b0c75ff4d579e50fe048f3f74df1cd180a1d Mon Sep 17 00:00:00 2001 From: Simon Branford Date: Sun, 24 Nov 2024 16:14:05 +0000 Subject: [PATCH 1/5] adding easyconfigs: R-4.4.2-gfbf-2024a.eb, R-bundle-CRAN-2024.11-foss-2024a.eb --- .../R-bundle-CRAN-2024.11-foss-2024a.eb | 3508 +++++++++++++++++ .../easyconfigs/r/R/R-4.4.2-gfbf-2024a.eb | 368 ++ 2 files changed, 3876 insertions(+) create mode 100644 easybuild/easyconfigs/r/R-bundle-CRAN/R-bundle-CRAN-2024.11-foss-2024a.eb create mode 100644 easybuild/easyconfigs/r/R/R-4.4.2-gfbf-2024a.eb diff --git a/easybuild/easyconfigs/r/R-bundle-CRAN/R-bundle-CRAN-2024.11-foss-2024a.eb b/easybuild/easyconfigs/r/R-bundle-CRAN/R-bundle-CRAN-2024.11-foss-2024a.eb new file mode 100644 index 00000000000..7c36a151d4a --- /dev/null +++ b/easybuild/easyconfigs/r/R-bundle-CRAN/R-bundle-CRAN-2024.11-foss-2024a.eb @@ -0,0 +1,3508 @@ +easyblock = 'Bundle' + +name = 'R-bundle-CRAN' +version = '2024.11' + +homepage = 'https://www.r-project.org/' +description = "Bundle of R packages from CRAN" + +toolchain = {'name': 'foss', 'version': '2024a'} + +builddependencies = [ + ('pkgconf', '2.2.0'), + ('Xvfb', '21.1.14'), + ('Autotools', '20231222'), + ('CMake', '3.29.3'), +] + +dependencies = [ + ('R', '4.4.2'), + ('libxml2', '2.12.7'), # for XML + ('GMP', '6.3.0'), # for igraph + ('NLopt', '2.7.1'), # for nlopt + ('FFTW', '3.3.10'), # for fftw + ('libsndfile', '1.2.2'), # for seewave + ('ICU', '75.1'), # for rJava & gdsfmt + ('HDF5', '1.14.5'), # for hdf5r + ('UDUNITS', '2.2.28'), # for units + ('GSL', '2.8'), # for RcppGSL + ('ImageMagick', '7.1.1-38'), + ('GLPK', '5.0'), # for Rglpk + ('nodejs', '20.13.1'), # for V8 (required by rstan) + ('GDAL', '3.10.0'), # for sf + ('MPFR', '4.2.1'), # for Rmpfr + ('PostgreSQL', '16.4'), # for RPostgreSQL +] + +# Some R extensions (mclust, quantreg, waveslim for example) require the math library (-lm) to avoid undefined symbols. +# Adding it to FLIBS makes sure it is present when needed. +preconfigopts = 'export FLIBS="$FLIBS -lm" && ' + +configopts = "--with-pic --enable-threads --enable-R-shlib" +# some recommended packages may fail in a parallel build (e.g. Matrix), and +# we're installing them anyway below +configopts += " --with-recommended-packages=no" + +exts_defaultclass = 'RPackage' + +exts_default_options = { + 'source_urls': [ + 'https://cran.r-project.org/src/contrib/Archive/%(name)s', # package archive + 'https://cran.r-project.org/src/contrib/', # current version of packages + 'https://cran.freestatistics.org/src/contrib', # mirror alternative for current packages + ], + 'source_tmpl': '%(name)s_%(version)s.tar.gz', +} + +# check whether correct version is installed in extension filter +# (some versions in this bundle may be newer than the ones provided by R) +local_ext_version_check = "pkgver = packageVersion('%(ext_name)s'); if (pkgver != '%(ext_version)s') " +local_stop_msg = "stop('%(ext_name)s %(ext_version)s not installed, found ', pkgver, ' instead')" +exts_filter = ("R -q --no-save", "%s { %s }" % (local_ext_version_check, local_stop_msg)) + +# the dbarts extension needs an additional compiler flag on Arm systems to prevent "incompatible types" errors +# cfr. https://github.com/vdorie/dbarts/issues/66 +if ARCH == 'aarch64': + local_dbarts_preinstallopts = 'sed -i "s|-c partition_neon.c|-flax-vector-conversions -c partition_neon.c|"' + local_dbarts_preinstallopts += ' src/misc/Makefile && ' +else: + local_dbarts_preinstallopts = '' + +# !! order of packages is important !! +# packages updated on 24 November 2024 +exts_list = [ + ('abind', '1.4-8', { + 'checksums': ['264a051b523ceae1795a0879e7768949ea55c586ac8db0adf1f5ebeddd2623e1'], + }), + ('magic', '1.6-1', { + 'checksums': ['ca79ec7ae92b736cb128556c081abf547f49956c326e053a76579889cbcb7976'], + }), + ('RcppProgress', '0.4.2', { + 'checksums': ['b1624b21b7aeb1dafb30f092b2a4bef4c3504efd2d6b00b2cdf55dc9df194b48'], + }), + ('lpSolve', '5.6.22', { + 'checksums': ['2a64dc46d6764f890704c186d0af0c3ead335e8604320bfe71a70872a14e745f'], + }), + ('linprog', '0.9-4', { + 'checksums': ['81a6aa2fdc075f12dc912794d0554f87705a8b872b99c89a90a69ee9ada864b4'], + }), + ('geometry', '0.5.0', { + 'checksums': ['b5f7554d6304e7bd0cda730e743b54634296391c1051663889980ebd7aaf9e61'], + }), + ('bit', '4.5.0', { + 'checksums': ['89ddc5e38c2d61718d117a0288828ab61dee93269ca61c609d3e173a85e7cbed'], + }), + ('filehash', '2.4-6', { + 'checksums': ['558b446ba354c6fa88f694e8d6d068f999d1e7b626164eb2aeacccbb0dee81b1'], + }), + ('ff', '4.5.0', { + 'checksums': ['2aed9052a93ca81af4c8cc7defce0f7aa0206b442b4795b6219f6e56b341188e'], + }), + ('bnlearn', '5.0.1', { + 'checksums': ['2452bd9523dbb4d6a44553cd67096523ba4d18800deef7b376e694d7c60af99e'], + }), + ('bootstrap', '2019.6', { + 'checksums': ['5252fdfeb944cf1fae35016d35f9333b1bd1fc8c6d4a14e33901160e21968694'], + }), + ('combinat', '0.0-8', { + 'checksums': ['1513cf6b6ed74865bfdd9f8ca58feae12b62f38965d1a32c6130bef810ca30c1'], + }), + ('deal', '1.2-42', { + 'checksums': ['a17f452a94fc3964c939c5b147ad6d4f326a0990493519d376d6700cf733a134'], + }), + ('fdrtool', '1.2.18', { + 'checksums': ['649966996bfaa71932eddfb8ab371187377d8b0212548305dd7b18664ae6baef'], + }), + ('formatR', '1.14', { + 'checksums': ['4ebaab2c3f8527871655246b62abd060bc75dae1cec7f962ca4752b8080f474c'], + }), + ('gtools', '3.9.5', { + 'checksums': ['dee9b6c1152db1a5dc427d074b32bbbb738708683f17a95e0e95e4d79fdf174b'], + }), + ('gdata', '3.0.1', { + 'checksums': ['db3a96dd2ba3c0ef6fc6b5176eba7b4d3eaa06b96fba3d8d0b13450c66763862'], + }), + ('GSA', '1.03.3', { + 'checksums': ['5459786190f40339addc45e7bb58c6a983548aa8feac7277ea7ec0662c5a282c'], + }), + ('infotheo', '1.2.0.1', { + 'checksums': ['c0fb8ec97ad3a49f231c4c993b5eee70c6a61c8c30dc4a46197867e4763a29d4'], + }), + ('lars', '1.3', { + 'checksums': ['c69e6a8da6a3344c0915dd1fd4c78fec5cdf50c62cf6297476e9bb7dc10b549d'], + }), + ('lazy', '1.2-18', { + 'checksums': 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['2f26353d8fcc989ac698c4e45bb683801b1a7bb60b14903d05a4d73c629c590f'], + }), + ('RcppTOML', '0.2.2', { + 'checksums': ['371391f9ca82221e76a424082ea9ebc5ea2c50f14e8408469b09d7dc3e6f63aa'], + }), + ('here', '1.0.1', { + 'checksums': ['08ed908033420d3d665c87248b3a14d1b6e2b37844bf736be620578c20ca346b'], + }), + ('reticulate', '1.40.0', { + 'checksums': ['cdfd7b966480008e097141c271a826f25906117d7adb3e168a302450342a28d8'], + }), + ('umap', '0.2.10.0', { + 'checksums': ['8d4786929345e8980bb8be8bb4b6300a679bba03a5984eed59e5e00c626b6ea9'], + }), + ('KODAMA', '2.4.1', { + 'checksums': ['5f2b1bf7684f78d636a7b81b9e07ff641ffd9369de0e3de135fcf619e3239627'], + }), + ('locfdr', '1.1-8', { + 'checksums': ['42d6e12593ae6d541e6813a140b92591dabeb1df94432a515507fc2eee9a54b9'], + }), + ('ica', '1.0-3', { + 'checksums': ['474d3530b16b76a1bf1a1114d24092678ea7215fa57c6fdcee6333f1e768b865'], + }), + ('dtw', '1.23-1', { + 'checksums': ['6ed6a3b52be673ce2617b8d48723c7c488c95aab88fe2912d7e00507838e826d'], + }), + ('SDMTools', '1.1-221.2', { + 'checksums': ['f0dd8c5f98d2f2c012536fa56d8f7a58aaf0c11cbe3527e66d4ee3194f6a6cf7'], + }), + ('ggridges', '0.5.6', { + 'checksums': ['efccaa309a150d11c6b402b912e618ea041f25cca3101f32cd821a6f41684e35'], + }), + ('TFisher', '0.2.0', { + 'checksums': ['bd9b7484d6fba0165841596275b446f85ba446d40e92f3b9cb37381a3827e76f'], + }), + ('lsei', '1.3-0', { + 'checksums': ['6289058f652989ca8a5ad6fa324ce1762cc9e36c42559c00929b70f762066ab6'], + }), + ('npsurv', '0.5-0', { + 'checksums': ['bc87db76e7017e178c2832a684fcd49c42e20054644b21b586413d26c8821dc6'], + }), + ('fitdistrplus', '1.2-1', { + 'checksums': ['68b4215a9dfff65880a3ba6f7febe4929b197611344932b79af05d91dc584558'], + }), + ('hdf5r', '1.3.11', { + 'installopts': '--configure-args="--with-hdf5=$EBROOTHDF5/bin/h5pcc"', + 'preinstallopts': "unset LIBS && ", + 'checksums': ['9795d667bc72acfabece1e3ece1aa4e60e8194cb4eb8b46985efccd19a55a8c4'], + }), + ('DTRreg', '2.2', { + 'checksums': ['9c8954d5c342af85611d13dab5be64c4a7a5904644a6e04ff21d5494559e2fc7'], + }), + ('pulsar', '0.3.11', { + 'checksums': ['ee82ef25b2be4bbac713c34bca85d8ea1fa0e32eb8c800dad7256e145fc79393'], + }), + ('bayesm', '3.1-6', { + 'checksums': ['17d72b9cdc090845f98e7a04640380d0baef8bc23d1487c8f64dc192fdb93cb5'], + }), + ('gsl', '2.1-8', { + 'checksums': ['f33609bf485abd190e65ff5d0fdab438b759294c47b921d983d89d6f053a2d95'], + }), + ('energy', '1.7-12', { + 'checksums': ['ac2224befa4c6ab62f99816ff670b1ee35288cabb7db362257e9af21c87e6f72'], + }), + ('compositions', '2.0-8', { + 'checksums': ['c5063488f456992b5821458b3237322addffd3451ae91f9474707886971ef290'], + }), + ('clustree', '0.5.1', { + 'checksums': ['b5f2496e596e3fd140ace69c4837085e13f3abb850f5eb57d496380691fdd117'], + }), + ('tweedie', '2.3.5', { + 'checksums': ['983c745fee5a780d46e8dd04c2eb1c10cb2e222d3679654f0d6934d3db7b1c3e'], + }), + ('RcppGSL', '0.3.13', { + 'checksums': ['fe5e73bc119c6424e1a40b6fea17417a7bba93e81dbe9b7cf86dde9b8e8d93e7'], + }), + ('mvabund', '4.2.1', { + 'checksums': ['ed6946c95609443584081100cd38624d2309f7f5d210fd4b8ec12ad25bd27a06'], + }), + ('fishMod', '0.29.2', { + 'checksums': ['6cd0feedebbaa68f841a4e5ee82cc7f2a048c30e5632184921acb06824a72f5a'], + }), + ('alabama', '2023.1.0', { + 'checksums': ['925f67c72d9cdb677105377777bd09e9b56a61573bea7e3f69e0a49595c7bf1c'], + }), + ('gllvm', '1.4.3', { + 'checksums': ['63b77040e9cf2694882d1d80a3bc3030b3a348819ea38e6728417e4c5de07ecc'], + }), + ('grpreg', '3.5.0', { + 'checksums': ['160b321aee0bb911cc9cdf50f1a9b3884ecfab2b77e200aef38b18df0f98840c'], + }), + ('trust', '0.1-8', { + 'checksums': ['952e348b62aec35988b103fd152329662cb6a451538f184549252fbf49d7dcac'], + }), + ('lpSolveAPI', '5.5.2.0-17.12', { + 'checksums': ['4f00a9d27055ddf3e2a4b0a529b720861b9f916f2ceb1fe0b71e4c52da5b70ef'], + }), + ('ergm', '4.7.5', { + 'checksums': ['f4f768df44f9594f74faf82cdcfcb4d6eeeafffb9785e3687586234c6a612c96'], + }), + ('networkLite', '1.0.5', { + 'checksums': ['aaab55d4f8f0b330fe7c1ecbab3c44746c52c2fda99c53c6b46042bb8775718b'], + }), + ('networkDynamic', '0.11.5', { + 'checksums': ['a33ff40ca8d7f923915219793eb6b5acfa9a2c888e3dacc031210f414bf2a5c0'], + }), + ('ergm.multi', '0.2.1.1', { + 'checksums': ['b661d8ccc2d7fa1959bcb93db15cb448bd39d21d192aa62fe0cdad4c9ea15e88'], + }), + ('tergm', '4.2.1', { + 'checksums': ['8a1cc04350e6d46bf510558ca47fe51a3b81d26214ecfc2d73ba35d3600e60d7'], + }), + ('ergm.count', '4.1.2', { + 'checksums': ['9bce70b64a2f60b242603b771370b40d7f7aeed37ed426670131fd966c13b020'], + }), + ('tsna', '0.3.5', { + 'checksums': ['4ee2f773d573f0f4bd93131156fdccf01d7f1a3f725eff3e885021098c6bff65'], + }), + ('statnet', '2019.6', { + 'checksums': ['0903e1a81ed1b6289359cefd12da1424c92456d19e062c3f74197b69e536b29d'], + }), + ('aggregation', '1.0.1', { + 'checksums': ['86f88a02479ddc8506bafb154117ebc3b1a4a44fa308e0193c8c315109302f49'], + }), + ('ComICS', '1.0.4', { + 'checksums': ['0af7901215876f95f309d7da6e633c38e4d7faf04112dd6fd343bc15fc593a2f'], + }), + ('dtangle', '2.0.9', { + 'checksums': ['c375068c1877c2e8cdc5601cfd5a9c821645c3dff90ddef64817f788f372e179'], + }), + ('mcmc', '0.9-8', { + 'checksums': ['6a06440d4b58e8a7f122747d92046ff40da4bb58a20bf642228a648a0c826ea7'], + }), + ('MCMCpack', '1.7-1', { + 'checksums': ['3b0b46746324197c38826cde06729f031311c3520d9d42815b7b356d29b58529'], + }), + ('shinythemes', '1.2.0', { + 'checksums': ['37d68569ce838c7da9f0ea7e2b162ecf38fba2ae448a4888b6dd29c4bb5b2963'], + }), + ('csSAM', '1.2.4', { + 'checksums': ['3d6442ad8c41fa84633cbbc275cd67e88490a160927a5c55d29da55a36e148d7'], + }), + ('bridgedist', '0.1.3', { + 'checksums': ['62b4e24e82e702537c907522e73b3f7381a6aa274e97ac7d1ab01d513d61c41b'], + }), + ('asnipe', '1.1.17', { + 'checksums': ['e7b4010fa1adf27534420db2971dae3c63190920a4323c86fd586842e22d9b07'], + }), + ('liquidSVM', '1.2.4', { + 'patches': ['liquidSVM-1.2.4-fix_ppc_and_aarch64_build.patch'], + # Don't add optimization flags by liquidSVM which may not be known e.g. on PPC + 'preinstallopts': 'LIQUIDSVM_TARGET="empty"', + 'checksums': [ + {'liquidSVM_1.2.4.tar.gz': '15a9c7f2930e2ed3f4c5bcd9b042884ea580d2b2e52e1c68041600c196046aba'}, + {'liquidSVM-1.2.4-fix_ppc_and_aarch64_build.patch': + '46b09e441c3b59af535f20d8db0dee7f1d6a7ddd511175d252115b53cb8b86f8'}, + ], + }), + ('oddsratio', '2.0.1', { + 'checksums': ['2097e7a8bf623379d55652de5dce4946d05163e85d30df50dc19055962bf60b5'], + }), + ('mltools', '0.3.5', { + 'checksums': ['7093ffceccdf5d4c3f045d8c8143deaa8ab79935cc6d5463973ffc7d3812bb10'], + }), + ('h2o', '3.44.0.3', { + 'checksums': ['61a85f6c2f15e8e96839f8a4fd3a45eaa6bca90517bb20a4dd36e951d6fd0c82'], + }), + ('mlegp', '3.1.9', { + 'checksums': ['63296d17a162fdce0958b10f45cb7d5dab4b3ee29340528d33cedcae08a040b3'], + }), + ('itertools', '0.1-3', { + 'checksums': ['b69b0781318e175532ad2d4f2840553bade9637e04de215b581704b5635c45d3'], + }), + ('missForest', '1.5', { + 'checksums': ['417055a03b02ad8359cf1bdc8f89d49531a3a8ee2c98edf90c8a01432f44838d'], + }), + ('bartMachineJARs', '1.2.1', { + 'checksums': ['9f7a20acf4aec249e16f83d81f5ec796aa718deb1b8bc24393fc0421eb8ce1c0'], + }), + ('bartMachine', '1.3.4.1', { + 'checksums': ['3b0a5250f5425a8efe460adcb58ea1342f1d845ae3a8db29dbf4806653884b89'], + }), + ('lqa', '1.0-3', { + 'checksums': ['3889675dc4c8cbafeefe118f4f20c3bd3789d4875bb725933571f9991a133990'], + }), + ('PresenceAbsence', '1.1.11', { + 'checksums': ['c63a6453783865b7c69c580a09a769e99390dd8b2e0f63e48fbfc86da3bee4b7'], + }), + ('GUTS', '1.2.5', { + 'checksums': ['9d983a566daa07d3e0036fe7011efe94f29e31a611493ba16bd316b61730a7b7'], + }), + ('GenSA', '1.1.14.1', { + 'checksums': ['2fdd54cbd670c9eaba304547d8c44fc51578cb317adb9788a0fc82f58ace377f'], + }), + ('parsedate', '1.3.1', { + 'checksums': ['1fc31ab9813b61680abf4f4c2705b8f484d56d1d3ef256df84b342b628b6d1b1'], + }), + ('circular', '0.5-1', { + 'checksums': ['fb59fc9119d777fbc77fe054db83abce84c470ac3269c2aa42b5f5df7683f3d9'], + }), + ('cobs', '1.3-8', { + 'checksums': ['2c2049c7cb868a2e4e1a530fe7218fac56e6157ef64ad57b91c5bb457dbc9821'], + }), + ('resample', '0.6', { + 'checksums': ['1b958009b18c92a47971847c782af76952ea4e85d5f1e3e1e70fa35c67b95265'], + }), + ('MIIVsem', '0.5.8', { + 'checksums': ['a908f51e1598290d25864c358d57201bd50c1c40775d4d0405cbc8077bee61e1'], + }), + ('medflex', '0.6-10', { + 'checksums': ['bd89a8fe939f3becd71a9dab30fe27fa43c96572d8309d2c1a70633117d4cb33'], + }), + ('Rserve', '1.8-13', { + 'checksums': ['7e5d312fca8029d746f60e7d9e701129561942f97dfc33b036b123f159d69a4c'], + }), + ('spls', '2.2-3', { + 'checksums': ['bbd693da80487eef2939c37aba199f6d811ec289828c763d9416a05fa202ab2e'], + }), + ('Boruta', '8.0.0', { + 'checksums': ['38e75b1ebc8b2d1c54b3373a42529b819c7b4773fd4932f57bc9701d1e3e3dc7'], + }), + ('dr', '3.0.10', { + 'checksums': ['ce523c1bdb62a9dda30afc12b1dd96975cc34695c61913012236f3b80e24bf36'], + }), + ('CovSel', '1.2.1', { + 'checksums': ['b375d00cc567e125ff106b4357654f43bba3abcadeed2238b6dea4b7a68fda09'], + }), + ('tmle', '2.0.1.1', { + 'checksums': ['8c2448f176ed94201affb8a9c42a5d0f56f26e88131ff2c1f4a9d14c5a0d87f6'], + }), + ('ctmle', '0.1.2', { + 'checksums': ['e3fa0722cd87aa0e0b209c2dddf3fc44c6d09993f1e66a6c43285fe950948161'], + }), + ('BayesPen', '1.0', { + 'checksums': ['772df9ae12cd8a3da1d5b7d1f1629602c7693f0eb03945784df2809e2bb061b0'], + }), + ('inline', '0.3.20', { + 'checksums': ['72c4af5d872fe2689444d74d5722e732d7a4b896aca73aad0b3f200268570204'], + }), + ('BMA', '3.18.19', { + 'checksums': ['09ead6ec3dc0bcc1de4d47b18b705fd2a7637cd888eec220cbc5b175e8ca8d42'], + }), + ('BCEE', '1.3.2', { + 'checksums': ['f0e0a6a4eb11213073aa2f0cd6c76d87e8b3965124d8ca509538eb3c128533a0'], + }), + ('bacr', '1.0.1', { + 'checksums': ['c847272e2c03fd08ed79b3b739f57fe881af77404b6fd087caa0c398c90ef993'], + }), + ('clue', '0.3-66', { + 'checksums': ['aa86dd58c05635eb394c9ede0dd15a4f24af4815f299451bbc7895c0f737c2fb'], + }), + ('bdsmatrix', '1.3-7', { + 'checksums': ['c3505e5ac06d5e01b3a6bad94177f8375cd9867bb0146cc9c63d92424ecb7922'], + }), + ('fftwtools', '0.9-11', { + 'checksums': ['f1f0c9a9086c7b2f72c5fb0334717cc917213a004eaef8448eab4940c9852c7f'], + }), + ('imagerExtra', '1.3.2', { + 'checksums': ['0ebfa1eabb89459d774630ab73c7a97a93b9481ea5afc55482975475acebd5b8'], + }), + ('MALDIquant', '1.22.3', { + 'checksums': ['fd094f0ea1a163ad1bd290e789ad827a76075d82ae5ce8a8e53a7095a7479383'], + }), + ('threejs', '0.3.3', { + 'checksums': ['76c759c8b20fb34f4f7a01cbd1b961296e1f19f4df6dded69aae7f1bca80219c'], + }), + ('LaplacesDemon', '16.1.6', { + 'checksums': ['57b53882fd7a195b38bbdbbf0b17745405eb3159b1b42f7f11ce80c78ab94eb7'], + }), + ('rda', '1.2-1', { + 'checksums': ['37038a9131c9133519f5e64fa1a86dbe28b21f519cf6528503234648a139ae9a'], + }), + ('sampling', '2.10', { + 'checksums': ['fdec976ec0abfb5c690049d76f89ebcb8ab3650e2eb28a5b54c3984d17372775'], + }), + ('lda', '1.5.2', { + 'checksums': ['95d354786e002352a973052df993b9d3acfc9f9598a053afb95ac27c7e150fd4'], + }), + ('jiebaRD', '0.1', { + 'checksums': ['045ee670f5378fe325a45b40fd55136b355cbb225e088cb229f512c51abb4df1'], + }), + ('jiebaR', '0.11', { + 'checksums': ['adde8b0b21c01ec344735d49cd33929511086719c99f8e10dce4ca9479276623'], + }), + ('hdm', '0.3.2', { + 'checksums': ['3354b22752f0aa0c0d9c8c12b38810202b6380f2587e539be11d9a358412fe6a'], + }), + ('abe', '3.0.1', { + 'checksums': ['66d2e9ac78ba64b7d27b22b647fc00378ea832f868e51c18df50d6fffb8029b8'], + }), + ('SignifReg', '4.3', { + 'checksums': ['f755808fcb618582acb862729b20e267d9c2214f22e6e7a0c8d29073d8faa7b8'], + }), + ('bbmle', '1.0.25.1', { + 'checksums': ['d92a0cf819fe4c08b8eb17f5e03275c8accde7f3b54f990cbba5ab926575b60b'], + }), + ('emdbook', '1.3.13', { + 'checksums': ['26044b7ea1b42304b4dfde48afa94dd487acf979da4db2bf670ba41222083c19'], + }), + ('SOAR', '0.99-11', { + 'checksums': ['d5a0fba3664087308ce5295a1d57d10bad149eb9771b4fe67478deae4b7f68d8'], + }), + ('rasterVis', '0.51.6', { + 'checksums': ['61bd0d19d045b50c6764f3a7c95ce1e734af9e5f964449825d002afe02109489'], + }), + ('tictoc', '1.2.1', { + 'checksums': ['8fcdb7c9a1e4b4817bcab654effd64dea6ec749a7901d4060d5b5c625fc88833'], + }), + ('ISOcodes', '2024.02.12', { + 'checksums': ['02cb7b918034085dffcba0d329a2bc52514873f898a3a716560ebf17b57ae2e6'], + }), + ('stopwords', '2.3', { + 'checksums': ['c5ec1c6ab1bad1786d87d7823d4b63abc94d2fd84ed7d8e985906e96fb6321b2'], + }), + ('janeaustenr', '1.0.0', { + 'checksums': ['b4c32ee1395ee4a8efe714c535c0fe578b0dbf5f3bb85b41fa5cc87569b8e8aa'], + }), + ('SnowballC', '0.7.1', { + 'checksums': ['753cf13f3206751662c03b1cf39bce9e680024f6d9f8503b836a83797181c034'], + }), + ('tokenizers', '0.3.0', { + 'checksums': ['24571e4642a1a2d9f4f4c7a363b514eece74788d59c09012a5190ee718a91c29'], + }), + ('hunspell', '3.0.5', { + 'checksums': ['bcceadda94f5c87ffe1c8695f9d4cc561c2618b4ac7432aa56b833567d90fc3a'], + }), + ('topicmodels', '0.2-17', { + 'checksums': ['3867e15ff5d318307695c1aa196b8fe405ee4cbd4f7574e298d78ef778d5168d'], + }), + ('tidytext', '0.4.2', { + 'checksums': ['0cf4180c2ab9fdb158337a7bfb6ba32f15fb61aae28abce425deaa5933ed2d54'], + }), + ('splitstackshape', '1.4.8', { + 'checksums': ['656032c3f1e3dd5b8a3ee19ffcae617e07104c0e342fc3da4d863637a770fe56'], + }), + ('grImport2', '0.3-3', { + 'checksums': ['f612289f8da9894aaaee843125c2d491390bbcb527a7d8462f4398137df8f485'], + }), + ('preseqR', '4.0.0', { + 'checksums': ['0143db473fb9a811f9cf582a348226a5763e62d9857ce3ef4ec41412abb559bc'], + }), + ('idr', '1.3', { + 'checksums': ['6b3910dc48495439cd01828f8999823864a6712f73560ee3e6c903065c67d1e4'], + }), + ('entropy', '1.3.1', { + 'checksums': ['6f5a89f5ce0e90cbed1695b81259326c976e7a8f538157e223ee5f63b54412b8'], + }), + ('kedd', '1.0.4', { + 'checksums': ['bb944389a61cff22bb3bdde938a0ff6c16700a1ca725ef36b391b97812c45b26'], + }), + ('HiddenMarkov', '1.8-13', { + 'checksums': ['7186d23e561818f3e1f01376a4fb2af9ccee775ce5afc1e3175f3b07a81db515'], + }), + ('lmerTest', '3.1-3', { + 'checksums': ['35aa75e9f5f2871398ff56a482b013e6828135ef04916ced7d1d7e35257ea8fd'], + }), + ('distributional', '0.5.0', { + 'checksums': ['345cde8a5479b4783a7bee47196b360303901a03e2e72e36ca4c5e49df2e71ac'], + }), + ('posterior', '1.6.0', { + 'checksums': ['34612a39fb15a8e3ba6ef5c32a041a4b5f77554216dd774563f46db1150bf40c'], + }), + ('loo', '2.8.0', { + 'checksums': ['aab727a95a2e1c0e5005188e7daa6eba52455fa0c5869130d53cee5a8963244c'], + }), + ('RcppParallel', '5.1.9', { + 'checksums': ['fd0861f3f0f7be4e0ef29c021e75beb351ae2eb18ce5d79e21f2725da4da114f'], + }), + ('StanHeaders', '2.32.10', { + 'checksums': ['c3125b8d7dc4c6b7082258b2fa6c9530c2e4714c89ffd08b8e72f4c9f4108582'], + }), + ('V8', '6.0.0', { + 'installopts': '--configure-vars="INCLUDE_DIR=$CPATH LIB_DIR=$LIBRARY_PATH"', + 'preinstallopts': "export CPATH=$EBROOTNODEJS/include/node:$CPATH && ", + 'checksums': ['7f222be9c42474414227c35eed9ce8c4c026728f14c29de33108ddc3885a7df3'], + }), + ('QuickJSR', '1.4.0', { + 'checksums': ['345dda48e2bd055a67234ebc5ad3270563f5e80300a69069c414ff119a7b54ba'], + }), + ('rstan', '2.32.6', { + 'checksums': ['3390d00191bbd3b0739dd19fe437b99a041a6b04be208877b48419d1348a1a70'], + }), + ('Rborist', '0.3-7', { + 'checksums': ['011efef9e6f304f752bd5013627dc8482f0e9d4cf1ec49503e97d3718f542596'], + }), + ('VSURF', '1.2.0', { + 'checksums': ['c027b1e19762f1eaf4a559c2592f3530210fefd21ee3d7c787c73b776c683393'], + }), + ('mRMRe', '2.1.2.2', { + 'checksums': ['1d2c3b53a6ecfa61f4891e08114d6951ebb7a9830c934515406e180277339209'], + }), + ('dHSIC', '2.1', { + 'checksums': ['94c86473790cf69f11c68ed8ba9d6ae98218c7c69b7a9a093f235d175cf83db0'], + }), + ('ggsci', '3.2.0', { + 'checksums': ['41d8ed4c01c3740028bdf2ba9c5550f1142061e4a40c93b1d2160719c59c3c4a'], + }), + ('ggsignif', '0.6.4', { + 'checksums': ['112051af425a0c0f2998ce187dacad066bc16f55af01e3e7b76d62ff6954b20a'], + }), + ('corrplot', '0.95', { + 'checksums': ['84a31f675041e589201b4d640753302abc10ccc2c0ca0a409b5153861989d776'], + }), + ('rstatix', '0.7.2', { + 'checksums': ['e0c6f5ab1d9c5d84713defabc5d149aad3d55944cffdb903cc128b694e5221a1'], + }), + ('ggfan', '0.1.3', { + 'checksums': ['5c888b203ecf5e3dc7a317a790ca059c733002fbca4b4bc1a4f62b7ded5f70dc'], + }), + ('ggpubr', '0.6.0', { + 'checksums': ['2e6ec5d8151991d17ef8832259cf545fa0d1a50b326ba8c1c4657700171df774'], + }), + ('yaImpute', '1.0-34.1', { + 'checksums': ['679919d887682ddcdb89f8fda8828c88f67fed47afb5f497cc62b73bc46308de'], + }), + ('intrinsicDimension', '1.2.0', { + 'checksums': ['6cc9180a83aa0d123f1e420136bb959c0d5877867fa170b79536f5ee22106a32'], + }), + ('leiden', '0.4.3.1', { + 'checksums': ['a9ecbbcfa2724d8fdd0133af569278e036b25b6e2cbb23d453092cc6b3fc30e2'], + }), + ('sctransform', '0.4.1', { + 'checksums': ['5f6be7f8be543e4c32c8007207b603a750881459370b7bb5afd63e8c8fabf171'], + }), + ('packrat', '0.9.2', { + 'checksums': ['69df5943257e6c4d06f3d907241b668b53dedece72158ca935260b8b8e1672d7'], + }), + ('colourpicker', '1.3.0', { + 'checksums': ['c7f2618cd1ae1f7ac15aee072c648e6494dfff6714e13dc7cd1da993d1102510'], + }), + ('ggExtra', '0.10.1', { + 'checksums': ['6879edfe8e3905a2c299cbd18777422223ad30042bc6e20614ca5109a75de82c'], + }), + ('findpython', '1.0.9', { + 'checksums': ['b6a15e0cdfcdd4b1cfc76f7e4eaad0125d4d52889711200075280e9b2a2cb7cb'], + }), + ('argparse', '2.2.4', { + 'checksums': ['1d4efd137b8c3760f5beea2e0ba71293ce26a9d5533223adef0ffc5b816a1e47'], + }), + ('intergraph', '2.0-4', { + 'checksums': ['585f2f9fa92aa52022dfdcbe597a3654099ca63c1d4110a0f8e895fa32fc59c9'], + }), + ('ggnetwork', '0.5.13', { + 'checksums': ['6c297ead19dbd89de3278f3705410b757f2d9744bc466d8175105833a4e1fd46'], + }), + ('qqman', '0.1.9', { + 'checksums': ['3f6a931771d375174b78f220471ddd601def9b5c69631931b0992ebbc8c5bc13'], + }), + ('rstantools', '2.4.0', { + 'checksums': ['bff72ca2f0352c6c5d2868823e286fdb73a6ead74508a4124cbcb222c83b4faa'], + }), + ('bayesplot', '1.11.1', { + 'checksums': ['4f71e67391e0135acd3e890989b87025f3f8160242f532a8e1a0ed74ed0f3830'], + }), + ('dygraphs', '1.1.1.6', { + 'checksums': ['c3d331f30012e721a048e04639f60ea738cd7e54e4f930ac9849b95f0f005208'], + }), + ('renv', '1.0.11', { + 'checksums': ['57f126d1f80e72894d3ada17dec46462c899f7de7e064cc304a42035d7c8be25'], + }), + ('PKI', '0.1-14', { + 'checksums': ['c024e81977b978b705460df96639e3369420bd7e8f4f3242ec796255dc1b7966'], + }), + ('rsconnect', '1.3.3', { + 'checksums': ['48b5a5830b8c4e424332ffd35fe6f37d66b4801671e16f88c7705c689918851d'], + }), + ('shinystan', '2.6.0', { + 'checksums': ['a084856a2d66d8744f2c72e3e19ca35e600a508ed7ef1f7ebed8c7fc0738d529'], + }), + ('optimx', '2023-10.21', { + 'checksums': ['0d732d5604c26af59cfb95b80ed4e226c9c10422e2d82a6cc06b92f9ba6a44b5'], + }), + ('gamm4', '0.2-6', { + 'checksums': ['57c5b66582b2adc32f6a3bb6a259f5b95198e283a96d966a6007e8e48b380c89'], + }), + ('memisc', '0.99.31.8.1', { + 'checksums': ['529d57dfe3778caa04f20823422401c76a039217dd1ec3ab517aeb3ed220130f'], + }), + ('mclogit', '0.9.6', { + 'checksums': ['9adc5f6d8649960abe009c30d9b4c448ff7d174c455a594cbf104a33d5a36f69'], + }), + ('projpred', '2.8.0', { + 'checksums': ['b383ddc5eca275737b96e4e3e14256b4f4abc4b29d292b5cebf3828d0921a1f6'], + }), + ('brms', '2.22.0', { + 'checksums': ['1721ad13e1f851ff4593ab1c3b7f1f70a88351c7d904945c76d594a16cbb81be'], + }), + ('drgee', '1.1.10', { + 'checksums': ['e684f07f7dfec922380d4202922c11094f859721f77b31ff38b0d35d0f42c743'], + }), + ('stdReg', '3.4.1', { + 'checksums': ['285335dbe29b6898641e1151ab2f06acf76c6f4d6fbeadd66d151c25d7e38a74'], + }), + ('mcmcse', '1.5-0', { + 'checksums': ['4a820dc22c48efd32b7f9d1e1b897b4b3f165cd64b2ff85ba7029621cf9e7463'], + }), + ('copCAR', '2.0-4', { + 'checksums': ['8b4ed53c58a665f70e48bdca689a992a81d5ecb5a6051ca7361d3870e13c77f3'], + }), + ('batchmeans', '1.0-4', { + 'checksums': ['8694573009d9070a76007281407d3314da78902e122a9d8aec1f819d3bbe562c'], + }), + ('ngspatial', '1.2-2', { + 'checksums': ['3fa79e45d3a502a58c1454593ec83dfc73144e92b34c14f617a6126557dd0d26'], + }), + ('BIGL', '1.9.3', { + 'checksums': ['5224d3691f96ce6254253aa55acb4b4172aa734d4d471bf174cc1b370077539f'], + }), + ('drugCombo', '1.2.1', { + 'checksums': ['9a605c655c159604033558d757711e6d83d33dfc286c1280f722d4cb7d130f80'], + }), + ('betareg', '3.2-1', { + 'checksums': ['bb26368297f396766ca4b6f4d723713b64223d7f6bb20110ea3c7e9da33df7c7'], + }), + ('unmarked', '1.4.3', { + 'checksums': ['21af910d35c17d9103224a2f75e56083c14f93f3c63ec0e630a2940322ddda88'], + }), + ('maxlike', '0.1-11', { + 'checksums': ['6dde7bb4a46d5509a1fee024c2fd1d13c82e14a80806969ec89359103ade01e9'], + }), + ('coxme', '2.2-22', { + 'checksums': ['1bb492ea8cd5273a0361a0ec5525e799f33d9aa09e6dfd2a365a38a4673ae126'], + }), + ('AICcmodavg', '2.3-3', { + 'checksums': ['4055b5f1fc12917b9f812c056e6a2dbf23bbd0169e468f567306ddf29d699f7a'], + }), + ('pacman', '0.5.1', { + 'checksums': ['9ec9a72a15eda5b8f727adc877a07c4b36f8372fe7ed80a1bc6c2068dab3ef7c'], + }), + ('spaa', '0.2.2', { + 'checksums': ['a5a54454d4a7af473ce797875f849bd893005cb04325bf3e0dbddb19fe8d7198'], + }), + ('maxnet', '0.1.4', { + 'checksums': ['fd21e5ecf3c1ac00ef1bbe79fab4cdd62789e0c4c45f126f1b64bda667238216'], + }), + ('oai', '0.4.0', { + 'checksums': ['f540de066de5538e303cd535cbd2e771b40474bc2c6e8d08a4894a868543ee33'], + }), + ('wellknown', '0.7.4', { + 'checksums': ['483e6fc43edf09ed583e74ce5ca7e2d7838ef8a32291e06d774c37546eed1a34'], + }), + ('rgbif', '3.8.1', { + 'checksums': ['0cde28cf607887a5cf8f9024bbe93a6b01928d3f33e954d820a0b5e13963b66e'], + }), + ('rgdal', '1.6-7', { + 'checksums': ['555cedfdadb05db90b061d4b056f96d8b7010c00ea54bc6c1bbcc7684fadae33'], + }), + ('rgeos', '0.6-4', { + 'checksums': ['9d03c4de96fd3fad55ff8d1ff8113dcaaa00f15d9d0588e54c9f91751bcede11'], + }), + ('mapproj', '1.2.11', { + 'checksums': ['db2d201cc939de26717566066bf44225a967ccde6fc34731af845f03c086347d'], + }), + ('rbison', '1.0.0', { + 'checksums': ['9957e5f85ce68f5dd0ddc3c4b2b3c9d2f52d6f37587e1022ab8a44863534a83c'], + }), + ('rebird', '1.3.0', { + 'checksums': ['b238d3f246aa0249145894e1f3a90f46902f6615fc2f23b24c99bb5feecc55d3'], + }), + ('rvertnet', '0.8.4', { + 'checksums': ['b1826899f33640541752f2b68ed4d23530fe62744ac4714adf79ff748fc6701a'], + }), + ('leaflet.providers', '2.0.0', { + 'checksums': ['c5ceeadc8088c9840a8249f0347501cdba0119be97219a01ea2050d1dd4a8666'], + }), + ('leaflet', '2.2.2', { + 'checksums': ['d2877b8d394116cc648456a828c5b825728be6a7afbbb3d55cc142c91a1ab8eb'], + }), + ('svglite', '2.1.3', { + 'checksums': ['f0a8564e6f9127f4d1e05cf5a5f36b4e244aee0008e27473e504c63873ef0a54'], + }), + ('kableExtra', '1.4.0', { + 'checksums': ['8fe2cc9fc2e8991685c4dc9e4904459e6f572c945319befde36d76f3ab527409'], + }), + ('ridigbio', '0.4.1', { + 'checksums': ['ef1e4d9c842875150cb28f3199a658abab56d9e9d11c774be34d7e45dd883d73'], + }), + ('spocc', '1.2.3', { + 'checksums': ['ee14de78a9a91bf4220b3317d724f9e4953fda8b5478b2083690c984903db951'], + }), + ('spThin', '0.2.0', { + 'checksums': ['2e997afb79a2a990eded34c71afaac83986669cfa9ac51b15ae3f2b558902048'], + }), + ('RPostgreSQL', '0.7-7', { + 'checksums': ['f0593aa325cbabe7d7f984869e87cd86d350aeb9b9bf589191c9ebbb986c7d1c'], + }), + ('fasterize', '1.1.0', { + 'checksums': ['231aa04f505ec08162edfc3f3a410205a2bfde6c3261415ef7258f1ddab2375f'], + }), + ('BIEN', '1.2.6', { + 'checksums': ['fa7a25d89f26c10686fb4ab4d0aa704beb50dc44b173ff56abe4ab3e5991f99f'], + }), + ('rangeModelMetadata', '0.1.5', { + 'checksums': ['289620500522d489aafbb03c85f68182ef0a6701fed5f9d09b55fae337e2647b'], + }), + ('ENMeval', '2.0.4', { + 'checksums': ['6d9f3c460fa7ab3131cede904fcb9280cf69f4fdd43f67115a3abcb8ed5b64d1'], + }), + ('plotmo', '3.6.4', { + 'checksums': ['c8b23f608307917619d09df6c1fc7d8ac69872b3bfe0502d2999acd822ed8272'], + }), + ('earth', '5.3.4', { + 'checksums': ['3af94f925598fa2be7d320ad5365e285c008933cc0198a33b8149fdbaae6debc'], + }), + ('mda', '0.5-5', { + 'checksums': ['3351047bc55e678ba3cfb4590d1c253885c8cbcd4e3411582b9bde0a8a4062ce'], + }), + ('xgboost', '1.7.8.1', { + 'checksums': ['394d6fd00b2fe97549c7a7e6598df86448cdfbd7c0af45b0c17f7b9e81bc1be9'], + }), + ('biomod2', '4.2-5-2', { + 'checksums': ['1c4ca427b8d6af54de548023dcbe25c7e9cbea7afb684c58b66f4210af9eb4e5'], + }), + ('poLCA', '1.6.0.1', { + 'checksums': ['ed8c60a42bff0402c9ba2f9ce1422dd171e711c1a64498c4d96010ddb29f6b16'], + }), + ('PermAlgo', '1.2', { + 'checksums': ['aa2c774d6c6dcfeec882c1936e8723ef49bd36030fb10c17ca60bb9d4a519443'], + }), + ('coxed', '0.3.3', { + 'checksums': ['d0d6cb8fea9516b3c63b34d0d81f3804c18a07f97a83e51555575c8ed4c75626'], + }), + ('testit', '0.13', { + 'checksums': ['90d47168ab6bdbd1274b600b457626ac07697ce09792c92b2043be5f5b678d80'], + }), + ('NISTunits', '1.0.1', { + 'checksums': ['eaccd68db5c73d6a089ce5b323cdd51bc6a6a58ce467987158ba8c9be6a0a94e'], + }), + ('celestial', '1.4.6', { + 'checksums': ['9f647f41465ac65b254717698f1978871c378ad8e6ccaa693abf579437069abe'], + }), + ('RPMM', '1.25', { + 'checksums': ['f04a524b13918062616beda50c4e759ce2719ce14150a0e677d07132086c88c8'], + }), + ('RefFreeEWAS', '2.2', { + 'checksums': ['de2812f166caabf6ea01c0533402e5cd9d8a525a2a7583e4757decf22319caab'], + }), + ('wordcloud', '2.6', { + 'checksums': ['53716954430acd4f164bfd8eacd7068a908ee3358293ded6cd992d53b7f72649'], + }), + ('JADE', '2.0-4', { + 'checksums': ['d4b3d65a33cae454d3ab13343bceabfb3f6b8004ac64ae7bd86dee92a1cd2055'], + }), + ('awsMethods', '1.1-1', { + 'checksums': ['50934dc20cf4e015f1304a89de6703fed27e7bd54c6b9fc9fb253cdf2ecb7541'], + }), + ('aws', '2.5-6', { + 'checksums': ['9ab2c58290be25dbe00e5edc32406f92cc1663745ea5f12224c33a32678f392c'], + }), + ('ruv', '0.9.7.1', { + 'checksums': ['a0c54e56ba3d8f6ae178ae4d0e417a79295abf5dcb68bbae26c4b874734d98d8'], + }), + ('mhsmm', '0.4.21', { + 'checksums': ['293544afb194934b1d58cf88c6f8c372f537745514b6e428cf83ae62e87d2bba'], + }), + ('dbarts', '0.9-28', { + 'preinstallopts': local_dbarts_preinstallopts, + 'checksums': ['d2e4b4ee1c191e7c506be3fec5a5e877c1b36754cba558bd75eaac9cc6ac0138'], + }), + ('proftools', '0.99-3', { + 'checksums': ['e034eb1531af54013143da3e15229e1d4c2260f8eb79c93846014db3bdefb724'], + }), + ('NCmisc', '1.2.0', { + 'checksums': ['26fcfbc79810f23a28389a5ce5519e6ddc2470c5e924ba8cf4dd19a1b0fd9f83'], + }), + ('reader', '1.0.6', { + 'checksums': ['905c7c5a1b035ac8213fc533fa26e511abfeea40bd22e3edfde42a49074e88f4'], + }), + ('gnumeric', '0.7-10', { + 'checksums': ['f6fcd9012f2fa777127c86ba520d8dc834f4ea746a6e29623edd072479191c75'], + }), + ('tcltk2', '1.2-11', { + 'checksums': ['ad183ae3b7190501504a0589e0b3be480f04267303e3384fef00987446a37dc5'], + }), + ('minty', '0.0.4', { + 'checksums': ['96222703655deb365dc4199ff54daa17e7030949e4d921d6e9c039861ef60742'], + }), + ('readODS', '2.3.1', { + 'checksums': ['95ee571fc22ec3fb5db1de973f9eabdf4f73577972d3fe3283b5012614bbaf22'], + }), + ('nortest', '1.0-4', { + 'checksums': ['a3850a048181d5d059c1e74903437569873b430c915b709808237d71fee5209f'], + }), + ('EnvStats', '3.0.0', { + 'checksums': ['0413ec3d44b3251549a254b4afd76f520aaacd5374b463a5813e23e1fa8cd248'], + }), + ('outliers', '0.15', { + 'checksums': ['cc31d7f2faefd2c3a27f8ce78c7e67d3b321dcd6690292fad2468125e5e635fb'], + }), + ('gWidgets2', '1.0-9', { + 'checksums': ['d4d9ef7b2788efeb8209aa8dd610af4cd86286392fbdf9ea70bcfeafda95d4c5'], + }), + ('gWidgets2tcltk', '1.0-8', { + # need to run installation via xvfb-run to avoid problems on headless systems: + # no DISPLAY variable so Tk is not available + # [tcl] invalid command name "font" + 'preinstallopts': "xvfb-run ", + # skip 'import' check with library(gWidgets2tcltk), since it also fails on headless systems... + 'modulename': False, + 'checksums': ['10399cc636eeeb5484c3379970c37c56df10d979bf866a35b66d0c75b7222c0a'], + }), + ('mgsub', '1.7.3', { + 'checksums': ['c9ae2560fe2690bedc5248af3fc89e7ef2bc6c147d46ced28f9824584c3791d5'], + }), + ('ie2misc', '0.9.1', { + 'checksums': ['f1db0c66c8fa05e99c4059c1799abc3eb7effd7113baf03f38d26853ac05c425'], + }), + ('assertive.base', '0.0-9', { + 'checksums': ['4bf0910b0eaa507e0e11c3c43c316b524500c548d307eb045d6f89047e6ba01e'], + }), + ('assertive.properties', '0.0-5', { + 'checksums': ['b68954f53082561f0242682611bf3373e0bf30d8ac2256d82474edc5f992f4dd'], + }), + ('assertive.types', '0.0-3', { + 'checksums': ['ab6db2eb926e7bc885f2043fab679330aa336d07755375282d89bf9f9d0cb87f'], + }), + ('assertive.numbers', '0.0-2', { + 'checksums': ['bae18c0b9e5b960a20636e127eb738ecd8a266e5fc29d8bc5ca712498cd68349'], + }), + ('assertive.strings', '0.0-3', { + 'checksums': ['d541d608a01640347d661cc9a67af8202904142031a20caa270f1c83d0ccd258'], + }), + ('assertive.datetimes', '0.0-3', { + 'checksums': ['014e2162f5a8d95138ed8330f7477e71c908a29341697c09a1b7198b7e012d94'], + }), + ('assertive.files', '0.0-2', { + 'checksums': ['be6adda6f18a0427449249e44c2deff4444a123244b16fe82c92f15d24faee0a'], + }), + ('assertive.sets', '0.0-3', { + 'checksums': ['876975a16ed911ea1ad12da284111c6eada6abfc0118585033abc0edb5801bb3'], + }), + ('assertive.matrices', '0.0-2', { + 'checksums': ['3462a7a7e11d7cc24180330d48cc3067cf92eab1699b3e4813deec66d99f5e9b'], + }), + ('assertive.models', '0.0-2', { + 'checksums': ['b9a6d8786f352d53371dbe8c5f2f2a62a7866e30313f268e69626d5c3691c42e'], + }), + ('assertive.data', '0.0-3', { + 'checksums': ['5a00fb48ad870d9b3c872ce3d6aa20a7948687a980f49fe945b455339e789b01'], + }), + ('assertive.data.uk', '0.0-2', { + 'checksums': ['ab48dab6977e8f43d6fffb33228d158865f68dde7026d123c693d77339dcf2bb'], + }), + ('assertive.data.us', '0.0-2', { + 'checksums': ['180e64dfe6339d25dd27d7fe9e77619ef697ef6e5bb6a3cf4fb732a681bdfaad'], + }), + ('assertive.reflection', '0.0-5', { + 'checksums': ['c2ca9b27cdddb9b9876351afd2ebfaf0fbe72c636cd12aa2af5d64e33fbf34bd'], + }), + ('assertive.code', '0.0-4', { + 'checksums': ['2f820474ed20e06f65b284962c87cd1e85220a11cc7fcde09716f0eee5821387'], + }), + ('assertive', '0.3-6', { + 'checksums': ['c403169e83c433b65e911f7fd640b378e2a4a4765a36063584b8458168a4ea0a'], + }), + ('rdrop2', '0.8.2.1', { + 'checksums': ['b9add765fe8e7c966f0d36eef939a9e38f253958bd2a3c656b890cbb0366300b'], + }), + ('Exact', '3.3', { + 'checksums': ['fbd0d09ba1a28265f3c6c5043ebcded1f33c89fb46766374e79eae141cfa3342'], + }), + ('lmom', '3.2', { + 'checksums': ['da3c7bedb0f1b70423f0deba03cb936632d615fa509791ce998a8fedd1c7ad98'], + }), + ('gld', '2.6.6', { + 'checksums': ['ea23e9781207b5d47ed04e4d5758d9652cab5d1eedcf9fbc9c2ee4d3babffdc4'], + }), + ('DescTools', '0.99.58', { + 'checksums': ['62907753c4d3efe4ef6990f0e381dcac24c00956531f3d52b337896cf827e8b4'], + }), + ('orthopolynom', '1.0-6.1', { + 'checksums': ['ec4a6ed266532f2f6d37a4ca6bd1b74c1df28a8c2caeab60e5d6af15bdbfe2c5'], + }), + ('gaussquad', '1.0-3', { + 'checksums': ['a3337ce52bc53435cb4565a38bf48b72b384be397d2e86bb66f62973004dc810'], + }), + ('nlsem', '0.8-1', { + 'checksums': ['0674ec2a1ae7e50b08ee1b156674c2f2100258b14d6a9068f7dd6ad1ee128377'], + }), + ('tableone', '0.13.2', { + 'checksums': ['b1cf15579abd4240e24435d2d9aad255c839d2a0293e28cb2eef0c808c4727af'], + }), + ('jstable', '1.3.6', { + 'checksums': ['dbc7b6bba9c845948c7546910ff0f8d9b73549ed9f4fc4cd3890752df201c48d'], + }), + ('RCAL', '2.0', { + 'checksums': ['10f5f938a8322d8737159e1e49ce9d12419a5130699b8a19c6ca53d6508da8cc'], + }), + ('stargazer', '5.2.3', { + 'checksums': ['208e9b48a11cf56ce142731c204f3d2bcb5b68719f84309a36362cd925414265'], + }), + ('sensemakr', '0.1.6', { + 'checksums': ['bf27b92781f4746cdc7b2401d592c674baf0b05286573a936a2b24ccf3ad9be4'], + }), + ('CompQuadForm', '1.4.3', { + 'checksums': ['042fc56c800dd8f5f47a017e2efa832caf74f0602824abf7099898d9708660c4'], + }), + ('nonnest2', '0.5-8', { + 'checksums': ['19a5acd430a5b24e4ef72624ef065d0395b7fbedfeee4d09e3eb5e86c142dc82'], + }), + ('blavaan', '0.5-6', { + 'checksums': ['1e1f3c9debdc14b39a9ae98ef4269457cac19b9015aa6f7b0196a865d4d37b51'], + }), + ('mathjaxr', '1.6-0', { + 'checksums': ['ecc47607111b788d84789459af7f4f9102719f98640b7a23bd5a4eb1a6d3c179'], + }), + ('metadat', '1.2-0', { + 'checksums': ['f0cce5e30c3d256eaf5a41e4f52ffc7108e195016a4b99409e0ab4c2ef58f5b8'], + }), + ('metafor', '4.6-0', { + 'checksums': ['07344cc3bd87b8bd25ef998e9a6ce322ae8e448ef5af06ec3e79631724e18666'], + }), + ('RNifti', '1.7.0', { + 'checksums': ['e58cf73a0f5fbf5d6a2c845bfdeea193eb5262c73d0f329beae17d68f40e18e8'], + }), + ('oro.nifti', '0.11.4', { + 'checksums': ['efe4f5d2c2e37ff6c3e9250f54ef775e4d452c1334f781f22f219ed53148b606'], + }), + ('fmri', '1.9.12.1', { + 'checksums': ['4497b5a29d936552e1d2c07e2ea71d3b446f2e35dc8a21527bbc289a06b3db3b'], + }), + ('linkcomm', '1.0-14', { + 'checksums': ['36f1557c65d862fc87635eedfad77f18a5deb66da00895e50e2d5eac0f23b597'], + }), + ('rnetcarto', '0.2.6', { + 'checksums': ['4f28ae62748654cb6f90e1ffa17b05bb8b89eb6a20262d9c5d39cb862f71dc91'], + }), + ('optextras', '2019-12.4', { + 'checksums': ['59006383860826be502ea8757e39ed94338f04d246c4fc398a088e004d8b13eb'], + }), + ('setRNG', '2024.2-1', { + 'checksums': ['e3b21b08b7db3c2c06543a21718e1c18a2b2d2ddf4c92f0e44841d10f55d5c40'], + }), + ('Rvmmin', '2018-4.17.1', { + 'checksums': ['55000ac4ff57d42f172c46c7d6b0a603da3b65866d6440d6b32bac4d2b81814e'], + }), + ('Rcgmin', '2022-4.30', { + 'checksums': ['2684b8e7fb970da2afbc00e482031cf4447416249d04c4c1740400ad112fb911'], + }), + ('optimr', '2019-12.16', { + 'checksums': ['73b1ed560ffd74599517e8baa4c5b293aa062e9c8d50219a3a24b63e72fa7c00'], + }), + ('DMCfun', '4.0.1', { + 'checksums': ['e648bb8d364847448ef54e953d9c089c4aedb638aed9e2394723b0e85157c864'], + }), + ('miceadds', '3.17-44', { + 'checksums': ['6ef69dd1ac3b547a1450ca54c719c5d1f983a585207cb09ae3ad6b42a8cc2165'], + }), + ('visdat', '0.6.0', { + 'checksums': ['104acdbb9d41167b861ab24de0e1e1e14f61c1b476bac112fcbc6e47c157e598'], + }), + ('UpSetR', '1.4.0', { + 'checksums': ['351e5fee64204cf77fd378cf2a2c0456cc19d4d98a2fd5f3dac74b69a505f100'], + }), + ('norm', '1.0-11.1', { + 'checksums': ['c2ffe6c30fc203337bde49ef630a740141604d8e648c558e58c20116c47963bc'], + }), + ('naniar', '1.1.0', { + 'checksums': ['a94c46c3a78893bd935a0a51adb6a523915afb35427a56ce650b1e1ab28c6f44'], + }), + ('stringdist', '0.9.12', { + 'checksums': ['e1843452ff4184b8d3bc5168732c0c65d3fce11f0df9fcf92173a22ef92e66c4'], + }), + ('image.binarization', '0.1.3', { + 'checksums': ['ecc844bdd9bf15b88ce1e1afc8321c177bdc8ec32618c22102b1e8b02b36e00e'], + }), + ('lassosum', '0.4.5', { + 'source_urls': ['https://github.com/tshmak/%(name)s/releases/download/v%(version)s/'], + 'sources': ['%(name)s_%(version)s.tar.gz'], + 'checksums': ['18c0d0b5022bcf81a9bf1b3b6647da3e080f221828b473ea2a45a9bf98474fbc'], + }), + ('lslx', '0.6.11', { + 'checksums': ['373cfb1e79174b568dac254fab02d99bf79b830218bf18f0cc592af6fef853d6'], + }), + ('truncnorm', '1.0-9', { + 'checksums': ['5156acc4d63243bf95326d6285b0ba3cdf710697d67c233a12ae56f3d87ec708'], + }), + ('Rsolnp', '1.16', { + 'checksums': ['3142776062beb8e2b45cdbc4fe6e5446b6d33505253d79f2890fe4178d9cf670'], + }), + ('regsem', '1.9.5', { + 'checksums': ['7392bd644efe82f96da0df470a962de398f1d0162273cba1ff31c2ecd7f17a53'], + }), + ('semPLS', '1.0-10', { + 'checksums': ['cb587ccfdaf970f426dc7146035c7e010b1c51c17bf4fc089fd796eda58db460'], + }), + ('GxEScanR', '2.0.2', { + 'checksums': ['6d42fd15d83dd1491405b282d26fa472f9f9902a9dc68836d6a48b459ada6a4c'], + }), + ('admisc', '0.36', { + 'checksums': ['8fda4804c1674b9df545bf232ea05a214be9d102d21a6fd067d91ea757e86f6a'], + }), + ('polycor', '0.8-1', { + 'checksums': ['f05f53e0b5c992de0e5b4c6b2e998148cf83310358821e1bba180d81face0509'], + }), + ('multipol', '1.0-9', { + 'checksums': ['4ec305565c214872705f7d5ea4928c8761750663d664a77f1676d81a1ca0c632'], + }), + ('symmoments', '1.2.1', { + 'checksums': ['9a6be1f8fe44f6ab5a1790e870fd8b18de1686a48a14a9fca2d035bfb5458672'], + }), + ('rngWELL', '0.10-10', { + 'checksums': ['844499ce38622955a1d428a0ef62abe192bb2151a928c5bd933f34c062fd576f'], + }), + ('randtoolbox', '2.0.5', { + 'checksums': ['ab6eb953feb928e205a1d21dd577bef2b71d2108a61c4ce5e3879d7b53fed61f'], + }), + ('qrng', '0.0-10', { + 'checksums': ['51ee4eb9bf66fd125db8e5ed750edbc09e41a220994d06c3111f2ae73bcd8648'], + }), + ('spacefillr', '0.3.3', { + 'checksums': ['6cdaeaa7f617d5a94e90f0d6c32e16be8e86702d41e1ea7d08891452fdb9f021'], + }), + ('TruncatedNormal', '2.3', { + 'checksums': ['efb77996e2d263cc239d74658ce6cfb89822b7143b16fd5d0598ccc36ca08064'], + }), + ('cSEM', '0.5.0', { + 'checksums': ['25ae115520aab7d916da9ded1f87b8519c4e15101c4adef2284c51eb03d81728'], + }), + ('cubelyr', '1.0.2', { + 'checksums': ['18b10f1fe561305a1e115a438460264b88b301b3e8c086b931500a798be39b94'], + }), + ('furrr', '0.3.1', { + 'checksums': ['0d91735e2e9be759b1ab148d115c2c7429b79740514778828e5dab631dc0e48b'], + }), + ('broom.mixed', '0.2.9.6', { + 'checksums': ['f06bfd7ddec2db64ef53cfb02bcb2c0dc90ec3c27e41236c2930820a79e3988c'], + }), + ('DiceKriging', '1.6.0', { + 'checksums': ['ab5d1332809f2bb16d156ed234b102eb9fbd6de792e4291f9f6ea4652215cb49'], + }), + ('grf', '2.4.0', { + 'checksums': ['b53fb9b27a9d2e0e4f9da46e787c317118ace9e45e659d128af2ed8ca9176bc5'], + }), + ('twang', '2.6.1', { + 'checksums': ['0bb87dcd8f9b0628d96c50b565e9aa6222dfeb446165e12f52e4ee9b2e4e9179'], + }), + ('neuralnet', '1.44.2', { + 'checksums': ['5f66cd255db633322c0bd158b9320cac5ceff2d56f93e4864a0540f936028826'], + }), + ('PCAmatchR', '0.3.3', { + 'checksums': ['5dc9d8bb4c0020b5e51a53a4fa71afa9adc6b907ea618b231f5cfc2877a49779'], + }), + ('origami', '1.0.7', { + 'checksums': ['b44034541ac358e0686682684c40e9a1de8d78c7913e56e4d3dbe41a2a55c62c'], + }), + ('hal9001', '0.4.6', { + 'checksums': ['1123288b603f97de98b42178ab5b4809536f64d7884a46b829795245eacd08dd'], + }), + ('cobalt', '4.5.5', { + 'checksums': ['076c1956e1a24d3ded5ac6227bf05cb294e103dc0d02d825e65b72d2c5f62ec0'], + }), + ('CBPS', '0.23', { + 'checksums': ['ed8fe09b642db459a516bdeb03a49e718a7d5ad915cbf82400029508efe9b32d'], + }), + ('SBdecomp', '1.2', { + 'checksums': ['0be4e1c9e8bed87fd1712e62346a97148a1a295ff56981e832921cc390006e5c'], + }), + ('naturalsort', '0.1.3', { + 'checksums': ['cd38a9c5f323f61459e6096cdbf4493851d40497baf671af4f8dfe9a7c00e857'], + }), + ('lwgeom', '0.2-14', { + 'checksums': ['26db6cf7dbc8cf43a70e5e2a34941a1c4b65e182f86f58d64ff9f614b3be929c'], + }), + ('finalfit', '1.0.8', { + 'checksums': ['a42e8e02c8345f5665820b3e582e2b40ebbd76065601a8010ea93890dbcf1b3c'], + }), + ('bigD', '0.3.0', { + 'checksums': ['78cd83ad7e39ec6c899d6e56828ddf35d2739cccf83cc44e3df3c0a3eaa807a0'], + }), + ('juicyjuice', '0.1.0', { + 'checksums': ['64f5418b2a4794b47f0525baaf101beb4f1374ea22f38d7d604f5118bdb6e12a'], + }), + ('reactR', '0.6.1', { + 'checksums': ['9b690d7d4de54cbecca16deea9684f1d4aba91b2b280b38ea13c63eb5e57d892'], + }), + ('reactable', '0.4.4', { + 'checksums': ['b4aae6be2dd85aaa5226067415e501abc139e99499bc62c539630eeafdaf6af2'], + }), + ('gt', '0.11.1', { + 'checksums': ['e0c553a5a2a7dd5df543c614d15600df86fa6a9060dda5e5896b3b758abc5f5a'], + }), + ('gtsummary', '2.0.3', { + 'checksums': ['cd1c8278da3419935a5da36f48283bf0f2d074e6870602d03b3609505f810bc6'], + }), + ('ncdf4', '1.23', { + 'checksums': 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['c5a8248708e4803b28cd33189963eb5dd1624df10ecf90f4c8ef7895cc022c0b'], + }), +] + +modextrapaths = {'R_LIBS_SITE': ''} + +sanity_check_paths = { + 'files': [], + 'dirs': ['abind', 'base64', 'calibrate'], +} + +moduleclass = 'lang' diff --git a/easybuild/easyconfigs/r/R/R-4.4.2-gfbf-2024a.eb b/easybuild/easyconfigs/r/R/R-4.4.2-gfbf-2024a.eb new file mode 100644 index 00000000000..f6f0344f84b --- /dev/null +++ b/easybuild/easyconfigs/r/R/R-4.4.2-gfbf-2024a.eb @@ -0,0 +1,368 @@ +name = 'R' +version = '4.4.2' + +homepage = 'https://www.r-project.org/' +description = """R is a free software environment for statistical computing + and graphics.""" + +toolchain = {'name': 'gfbf', 'version': '2024a'} + +source_urls = ['https://cloud.r-project.org/src/base/R-%(version_major)s'] +sources = [SOURCE_TAR_GZ] +checksums = ['1578cd603e8d866b58743e49d8bf99c569e81079b6a60cf33cdf7bdffeb817ec'] + +builddependencies = [ + ('pkgconf', '2.2.0'), + ('Autotools', '20231222'), +] +dependencies = [ + ('X11', '2024060'), + ('Mesa', '24.1.3'), + ('libGLU', '9.0.3'), + ('cairo', '1.18.0'), + ('libreadline', '8.2'), + ('ncurses', '6.5'), + ('bzip2', '1.0.8'), + ('XZ', '5.4.5'), + ('zlib', '1.3.1'), + ('SQLite', '3.45.3'), + ('PCRE2', '10.43'), + ('libpng', '1.6.43'), # for plotting in R + ('libjpeg-turbo', '3.0.1'), # for plottting in R + ('LibTIFF', '4.6.0'), + ('Java', '11', '', SYSTEM), + ('libgit2', '1.8.1'), + ('OpenSSL', '1.1', '', SYSTEM), + ('cURL', '8.7.1'), + ('Tk', '8.6.14'), # for tcltk + ('HarfBuzz', '9.0.0'), # for textshaping + ('FriBidi', '1.0.15'), # for textshaping + +] + +# Some R extensions (mclust, quantreg, waveslim for example) require the math library (-lm) to avoid undefined symbols. +# Adding it to FLIBS makes sure it is present when needed. +preconfigopts = 'export FLIBS="$FLIBS -lm" && ' + +configopts = "--with-pic --enable-threads --enable-R-shlib" +# some recommended packages may fail in a parallel build (e.g. Matrix), and +# we're installing them anyway below +configopts += " --with-recommended-packages=no" + +exts_default_options = { + 'source_urls': [ + 'https://cran.r-project.org/src/contrib/Archive/%(name)s', # package archive + 'https://cran.r-project.org/src/contrib/', # current version of packages + 'https://cran.freestatistics.org/src/contrib', # mirror alternative for current packages + ], + 'source_tmpl': '%(name)s_%(version)s.tar.gz', +} + +# !! order of packages is important !! +# packages updated on 24 November 2024 +exts_list = [ + 'base', + 'compiler', + 'datasets', + 'graphics', + 'grDevices', + 'grid', + 'methods', + 'parallel', + 'splines', + 'stats', + 'stats4', + 'tcltk', + 'tools', + 'utils', + ('rlang', '1.1.4', { + 'checksums': ['f2d74527508bf3287102470beb27de0d234c3cbba399c28d3312f2c83c64a6e1'], + }), + ('Rcpp', '1.0.13-1', { + 'checksums': ['1d1fc623d27082b5749f9584a9204de410134b6412a192157a3e42e2ba43969a'], + }), + ('R6', '2.5.1', { + 'checksums': 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('lifecycle', '1.0.4', { + 'checksums': ['ada4d3c7e84b0c93105e888647c5754219a8334f6e1f82d5afaf83d4855b91cc'], + }), + ('pkgload', '1.4.0', { + 'checksums': ['09e4885e9cc25af29063a525da0b2ac9dd66fc7a95ea085bf5060312e3a67549'], + }), + ('fastmap', '1.2.0', { + 'checksums': ['b1da04a2915d1d057f3c2525e295ef15016a64e6667eac83a14641bbd83b9246'], + }), + ('htmltools', '0.5.8.1', { + 'checksums': ['f9f62293ec06c353c4584db6ccedb06a2da12e485208bd26b856f17dd013f176'], + }), + ('yaml', '2.3.10', { + 'checksums': ['e236d42d366e361d4855aa4f520260debd53a31e4786442b94770b045da02a6d'], + }), + ('knitr', '1.49', { + 'checksums': ['2952c579654649387e0020f4033a70ea838e55ab04a188e0baf592f09e98a2d3'], + }), + ('mime', '0.12', { + 'checksums': ['a9001051d6c1e556e881910b1816b42872a1ee41ab76d0040ce66a27135e3849'], + }), + ('praise', '1.0.0', { + 'checksums': ['5c035e74fd05dfa59b03afe0d5f4c53fbf34144e175e90c53d09c6baedf5debd'], + }), + ('brio', '1.1.5', { + 'checksums': 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+ ('testthat', '3.2.1.1', { + 'checksums': ['d785ce3975939e28b61048b0e28d881c80904534ff21e5b1a79a0a934124e9f7'], + }), + ('xml2', '1.3.6', { + 'checksums': ['e81991ff99bff3616dde8683c1327194e3ea64fa3b8062f52d8ce32673dd308f'], + }), + ('curl', '6.0.1', { + 'checksums': ['841c90bed7745f972ab524e542b1f5c3632767e3d521c163d483e436f3d42362'], + }), + ('sys', '3.4.3', { + 'checksums': ['051e7332e3074db826efef9059067721864f9d70adc55bbcae3a72e5ae83913a'], + }), + ('askpass', '1.2.1', { + 'checksums': ['6c2106a74c44a748f2cea795d9686e27a0058a90debcfd8558b62b06aec0c7dd'], + }), + ('openssl', '2.2.2', { + 'checksums': ['0cb45f413e8ce4664f79a20768fd7853c538ddb87f33819b5e7a6527ae828c96'], + }), + ('httr', '1.4.7', { + 'checksums': ['1555e6c2fb67bd38ff11b479f74aa287b2d93f4add487aec53b836ff07de3a3a'], + }), + ('jquerylib', '0.1.4', { + 'checksums': ['f0bcc11dcde3a6ff180277e45c24642d3da3c8690900e38f44495efbc9064411'], + }), + ('rappdirs', '0.3.3', { + 'checksums': ['49959f65b45b0b189a2792d6c1339bef59674ecae92f8c2ed9f26ff9e488c184'], + }), + ('sass', '0.4.9', { + 'checksums': ['e133049aad7964e0f6150257e1470b3748f36029322265ee797b8caf7517d4d2'], + }), + ('purrr', '1.0.2', { + 'checksums': ['2c1bc6bb88433dff0892b41136f2f5c23573b335ff35a4775c72aa57b48bbb63'], + }), + ('cachem', '1.1.0', { + 'checksums': ['550839fc2ae5d865db475ba2c1714144f07fa0c052c72135b0e4a70287492e21'], + }), + ('memoise', '2.0.1', { + 'checksums': ['f85034ee98c8ca07fb3cd826142c1cd1e1e5747075a94c75a45783bbc4fe2deb'], + }), + ('bslib', '0.8.0', { + 'checksums': ['fd182ddb1b128691d2b0c12882361732a23d451dbf4052ba70b11257e8d44b03'], + }), + ('fontawesome', '0.5.3', { + 'checksums': ['1b1909d0fad5ec4c658f5c628a195b9bd93d544afa957e68e897224cfb81fb4f'], + }), + ('tinytex', '0.54', { + 'checksums': ['fa5148e2a3813be5e174df3bae0401d282d7f7eb9fd3b173bc196fb9be90fffa'], + }), + ('rmarkdown', '2.29', { + 'checksums': ['6662ac85316c869caad6e3b95468cad97f6eef106d47b066db8d40c05a490928'], + }), + ('downlit', '0.4.4', { + 'checksums': ['55c377dcee4adc48c1060e14079f3d1832453d066a2cf070530caa210c48f828'], + }), + ('cpp11', '0.5.0', { + 'checksums': ['75dd64b7a5bfd92471cb71e0c22e24a7d7484fe0580d067cecadf288cc4334a3'], + }), + ('systemfonts', '1.1.0', { + 'checksums': ['1941069bd20320284ec026a38c53cb736be60bda431303ceaf8fd27ae13fb644'], + }), + ('textshaping', '0.4.0', { + 'checksums': ['35e940786bb278560de61bb55d4f46f8c86c878d0461613ceb8c98ba9b239d7a'], + }), + ('ragg', '1.3.3', { + 'checksums': ['42db845ff18d67cae6d291833c76a136c1ef02b5b246d4d90c1f1ae8cc1bb2af'], + }), + ('whisker', '0.4.1', { + 'checksums': ['bf5151494508032f68ac41e211bda80da9087c65c7068ffdd12f16669bf1f2bc'], + }), + ('httr2', '1.0.6', { + 'checksums': ['f00db6a68f1ba692dee39e702a30b28805e51e176299f5daf2e57c201151b6c5'], + }), + ('pkgdown', '2.1.1', { + 'checksums': ['c7e1c374f8c4684da630cbb471793ae36396beb92318620230159da0026c0cde'], + }), + ('htmlwidgets', '1.6.4', { + 'checksums': ['7cb08f0b30485dac26f72e4056ec4ed8825d1398e8b9f25ed63db228fe3a0ed0'], + }), + ('profvis', '0.4.0', { + 'checksums': ['d2fdeb0e6021f4dfc7c0634bec818cd82a6baf8042b80a1818aae0caa6bf4cf4'], + }), + ('urlchecker', '1.0.1', { + 'checksums': ['62165ddbe1b748b58c71a50c8f07fdde6f3d19a7b39787b9fa2b4f9216250318'], + }), + ('later', '1.3.2', { + 'checksums': ['52f5073d33cd0d3c12e56526c9c53c323ebafcc79b22cc6e51fb0c41ee2b561e'], + }), + ('promises', '1.3.0', { + 'checksums': ['f8209df3bab33340c1bc8c0d26caee2890fafb93129ff1423302abae5931fad3'], + }), + ('xtable', '1.8-4', { + 'checksums': ['5abec0e8c27865ef0880f1d19c9f9ca7cc0fd24eadaa72bcd270c3fb4075fd1c'], + }), + ('httpuv', '1.6.15', { + 'checksums': ['5e6ded3623a39df3e1db6cb7e7292b4c03c80b3c6c5faaac3b78b711cb205ed0'], + }), + ('sourcetools', '0.1.7-1', { + 'checksums': ['96812bdb7a0dd99690d84e4b0a3def91389e4290f53f01919ef28a50554e31d1'], + }), + ('shiny', '1.9.1', { + 'checksums': ['854b6a214f127d652de2e0e02d675fd53209b058c11911f56f8d41382ba654e3'], + }), + ('miniUI', '0.1.1.1', { + 'checksums': ['452b41133289f630d8026507263744e385908ca025e9a7976925c1539816b0c0'], + }), + ('brew', '1.0-10', { + 'checksums': ['4181f7334e032ae0775c5dec49d6137eb25d5430ca3792d321793307b3dda38f'], + }), + ('roxygen2', '7.3.2', { + 'checksums': ['b788879f9132b7e2e656f442a6c592314676a9bf32d6a0a56e156cfa1ada011c'], + }), + ('rversions', '2.1.2', { + 'checksums': ['de5818233e8271132fe8ea70145618950b35786e0d2f270e39bf3338f3b8b160'], + }), + ('sessioninfo', '1.2.2', { + 'checksums': ['f56283857c53ac8691e3747ed48fe03e893d8ff348235bff7364658bcfb0c7cb'], + }), + ('xopen', '1.0.1', { + 'checksums': ['e3b278b8c324a1aa2650141dd89d01253eea5c2555007422c797915689b29aec'], + }), + ('rcmdcheck', '1.4.0', { + 'checksums': ['bbd4ef7d514b8c2076196a7c4a6041d34623d55fbe73f2771758ce61fd32c9d0'], + }), + ('remotes', '2.5.0', { + 'checksums': ['4d663f1426cd88d42f4070f23d969305c575e0499ed1397be6607b0770d2850c'], + }), + ('clipr', '0.8.0', { + 'checksums': ['32c2931992fbec9c31b71de3e27059f1cbb45b4b1f45fd42e0e8dbcec6de3be9'], + }), + ('ini', '0.3.1', { + 'checksums': ['7b191a54019c8c52d6c2211c14878c95564154ec4865f57007953742868cd813'], + }), + ('gitcreds', '0.1.2', { + 'checksums': ['41c6abcca5635062b123ffb5af2794770eca5ebd97b05c5a64b24fa1c803c75d'], + }), + ('gh', '1.4.1', { + 'checksums': ['76bd3f2a31eeaf76a633362899a20b0f7e8fb6159d4777baf3da2a47854292af'], + }), + ('credentials', '2.0.2', { + 'checksums': ['496bd78832b93cd3ee4aef3719aa3cd4ce337e82a74084f22022466e4d5b5d0a'], + }), + ('zip', '2.3.1', { + 'checksums': ['83754408781c525917f36535865d28214893de0778b5f337e050cb543cacc28f'], + }), + ('gert', '2.1.4', { + 'checksums': ['2d982a3246c838fa98a15be94233a13091ef8f2bfe3728f57afebf623bf3776d'], + }), + ('usethis', '3.0.0', { + 'checksums': ['98f850f9ceaae37eb16ccd1232275b4e8f818c115c67151fa99096c477f7ccb5'], + }), + ('devtools', '2.4.5', { + 'checksums': ['38160ebd839acdec7ebf0699a085b4ab1ebd5500d3c57a9fa7ae484f1909904b'], + }), +] + +moduleclass = 'lang' From 81d5a54e58b0e80c5bf711ff487cbe9d612d59a8 Mon Sep 17 00:00:00 2001 From: Simon Branford <4967+branfosj@users.noreply.github.com> Date: Sun, 24 Nov 2024 16:44:24 +0000 Subject: [PATCH 2/5] typo in X11 version --- easybuild/easyconfigs/r/R/R-4.4.2-gfbf-2024a.eb | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/easybuild/easyconfigs/r/R/R-4.4.2-gfbf-2024a.eb b/easybuild/easyconfigs/r/R/R-4.4.2-gfbf-2024a.eb index f6f0344f84b..e8bba353a0c 100644 --- a/easybuild/easyconfigs/r/R/R-4.4.2-gfbf-2024a.eb +++ b/easybuild/easyconfigs/r/R/R-4.4.2-gfbf-2024a.eb @@ -16,7 +16,7 @@ builddependencies = [ ('Autotools', '20231222'), ] dependencies = [ - ('X11', '2024060'), + ('X11', '20240607'), ('Mesa', '24.1.3'), ('libGLU', '9.0.3'), ('cairo', '1.18.0'), From 6d5afcebdde3c92b36bf082ead5709d4e0e3dd74 Mon Sep 17 00:00:00 2001 From: Simon Branford <4967+branfosj@users.noreply.github.com> Date: Sun, 24 Nov 2024 17:57:34 +0000 Subject: [PATCH 3/5] consistent OpenSSL version --- easybuild/easyconfigs/r/R/R-4.4.2-gfbf-2024a.eb | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/easybuild/easyconfigs/r/R/R-4.4.2-gfbf-2024a.eb b/easybuild/easyconfigs/r/R/R-4.4.2-gfbf-2024a.eb index e8bba353a0c..1f9e2348866 100644 --- a/easybuild/easyconfigs/r/R/R-4.4.2-gfbf-2024a.eb +++ b/easybuild/easyconfigs/r/R/R-4.4.2-gfbf-2024a.eb @@ -32,7 +32,7 @@ dependencies = [ ('LibTIFF', '4.6.0'), ('Java', '11', '', SYSTEM), ('libgit2', '1.8.1'), - ('OpenSSL', '1.1', '', SYSTEM), + ('OpenSSL', '3', '', SYSTEM), ('cURL', '8.7.1'), ('Tk', '8.6.14'), # for tcltk ('HarfBuzz', '9.0.0'), # for textshaping From 96d90e92d50345e74c6c9f1a621d68960612caa7 Mon Sep 17 00:00:00 2001 From: Simon Branford <4967+branfosj@users.noreply.github.com> Date: Thu, 19 Dec 2024 14:30:14 +0000 Subject: [PATCH 4/5] use Java/17 --- easybuild/easyconfigs/r/R/R-4.4.2-gfbf-2024a.eb | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/easybuild/easyconfigs/r/R/R-4.4.2-gfbf-2024a.eb b/easybuild/easyconfigs/r/R/R-4.4.2-gfbf-2024a.eb index 1f9e2348866..b0294d69ae3 100644 --- a/easybuild/easyconfigs/r/R/R-4.4.2-gfbf-2024a.eb +++ b/easybuild/easyconfigs/r/R/R-4.4.2-gfbf-2024a.eb @@ -30,7 +30,7 @@ dependencies = [ ('libpng', '1.6.43'), # for plotting in R ('libjpeg-turbo', '3.0.1'), # for plottting in R ('LibTIFF', '4.6.0'), - ('Java', '11', '', SYSTEM), + ('Java', '17', '', SYSTEM), ('libgit2', '1.8.1'), ('OpenSSL', '3', '', SYSTEM), ('cURL', '8.7.1'), From dc9ca979e8c07743f8b6e5e3b96324d5395e531f Mon Sep 17 00:00:00 2001 From: Simon Branford <4967+branfosj@users.noreply.github.com> Date: Thu, 19 Dec 2024 14:51:21 +0000 Subject: [PATCH 5/5] sync in updates to R-bundle-CRAN-2024.06-foss-2023b.eb --- .../r/R-bundle-CRAN/R-bundle-CRAN-2024.11-foss-2024a.eb | 6 ++++++ 1 file changed, 6 insertions(+) diff --git a/easybuild/easyconfigs/r/R-bundle-CRAN/R-bundle-CRAN-2024.11-foss-2024a.eb b/easybuild/easyconfigs/r/R-bundle-CRAN/R-bundle-CRAN-2024.11-foss-2024a.eb index 7c36a151d4a..7ca98e9d621 100644 --- a/easybuild/easyconfigs/r/R-bundle-CRAN/R-bundle-CRAN-2024.11-foss-2024a.eb +++ b/easybuild/easyconfigs/r/R-bundle-CRAN/R-bundle-CRAN-2024.11-foss-2024a.eb @@ -3496,6 +3496,12 @@ exts_list = [ ('gsDesign', '3.6.5', { 'checksums': ['c5a8248708e4803b28cd33189963eb5dd1624df10ecf90f4c8ef7895cc022c0b'], }), + ('gcmr', '1.0.3', { + 'checksums': ['75773d5119179f186467d33608e9ce1c030d0755dfd6ff196546884078e89754'], + }), + ('frbs', '3.2-0', { + 'checksums': ['48505d415e3687afcb837e162b63b74173b3cd5df5f96140240e441c86343b2e'], + }), ] modextrapaths = {'R_LIBS_SITE': ''}