mkdocs.yml

site_name: Basic Tutorial for Polygenic Risk Score Analyses
repo_url: https://github.com/choishingwan/PRS-Tutorial
site_author: Shing Wan CHOI
nav:
    - index.md
    - 1. QC of Base Data: base.md
    - 2. QC of Target Data: target.md
    - 3. Calculating and analysing PRS: cal_prs.md
    - PLINK: plink.md
    - PRSice-2: prsice.md
    - LDpred-2: ldpred.md
    - lassosum: lassosum.md
    - 4. Visualizing PRS Results: plink_visual.md

theme: 
    name: readthedocs
    highlightjs: false

markdown_extensions:
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    - pymdownx.details
    - pymdownx.tabbed
    - pymdownx.superfences
    - pymdownx.highlight:
        use_pygments: true
        noclasses: true
    - toc:
        permalink: true
    - pymdownx.arithmatex:
        generic: true
    - pymdownx.betterem:
        smart_enable: all
    - pymdownx.caret


extra_css:
  - css/extra.css
  - css/details.css

google_analytics:
    - 'UA-145068952-1'
    - auto

extra_javascript:
  - 'https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.0/MathJax.js?config=TeX-MML-AM_CHTML'
  - javascripts/details.js