diff --git a/.circleci/config.yml b/.circleci/config.yml
index 1a12f497a..acbcf3fe4 100644
--- a/.circleci/config.yml
+++ b/.circleci/config.yml
@@ -52,7 +52,7 @@ common_jobs: &common_jobs
         - integration-tests:
             matrix:
               parameters:
-                testing_profile: [ "singularity-tests", "bitbucket-tests" ]
+                testing_profile: [ "singularity-tests", "bitbucket-tests", "toil-integration-tests" ]
             <<: *common_filters
             <<: *slack_context
             requires:
diff --git a/dockstore-client/src/main/java/io/dockstore/common/ToilOnlyTest.java b/dockstore-client/src/main/java/io/dockstore/common/ToilOnlyTest.java
new file mode 100644
index 000000000..495f5c07d
--- /dev/null
+++ b/dockstore-client/src/main/java/io/dockstore/common/ToilOnlyTest.java
@@ -0,0 +1,10 @@
+package io.dockstore.common;
+
+public interface ToilOnlyTest {
+
+    String NAME = "io.dockstore.common.ToilOnlyTest";
+
+    default String getName() {
+        return NAME;
+    }
+}
diff --git a/dockstore-client/src/main/java/io/github/collaboratory/cwl/cwlrunner/ToilWrapper.java b/dockstore-client/src/main/java/io/github/collaboratory/cwl/cwlrunner/ToilWrapper.java
index 3dc47b7e5..b993442ce 100644
--- a/dockstore-client/src/main/java/io/github/collaboratory/cwl/cwlrunner/ToilWrapper.java
+++ b/dockstore-client/src/main/java/io/github/collaboratory/cwl/cwlrunner/ToilWrapper.java
@@ -22,6 +22,8 @@
 import io.dockstore.client.cli.ArgumentUtility;
 import io.dockstore.client.cli.Client;
 import io.dockstore.openapi.client.api.MetadataApi;
+import java.nio.file.Path;
+import java.nio.file.Paths;
 import java.util.ArrayList;
 import java.util.Arrays;
 import java.util.List;
@@ -35,9 +37,9 @@ public void checkForCWLDependencies(MetadataApi metadataApi) {
         final ImmutablePair<String, String> pair1 = io.cwl.avro.Utilities
                 .executeCommand(Joiner.on(" ").join(Arrays.asList(s1)), false, com.google.common.base.Optional.absent(),
                         com.google.common.base.Optional.absent());
-        final String toilVersion = pair1.getValue().trim();
+        final String toilVersion = pair1.getKey().trim();
 
-        final String expectedToilVersion = "3.15.0";
+        final String expectedToilVersion = "7.0.0";
         if (!toilVersion.equals(expectedToilVersion)) {
             ArgumentUtility.errorMessage("toil version is " + toilVersion + " , Dockstore is tested with " + expectedToilVersion
                     + "\nOverride and run with `" + SCRIPT_FLAG + "`", Client.COMMAND_ERROR);
@@ -49,9 +51,15 @@ public List<String> getExecutionCommand(String outputDir, String tmpDir, String
         //TODO: this doesn't quite work yet, seeing "toil.batchSystems.abstractBatchSystem.InsufficientSystemResources: Requesting more disk
         // than either physically available, or enforced by --maxDisk. Requested: 537944653824, Available: 134853001216" on trivial
         // workflows like md5sum
+
+        //try normalizing paths
+        Path currentRelativePath = Path.of("");
+        Path tmpPath = Paths.get(currentRelativePath.toAbsolutePath().toString(), tmpDir);
+        tmpPath = tmpPath.normalize();
+
         ArrayList<String> command = new ArrayList<>(
-                Arrays.asList("toil-cwl-runner", "--logError", "--outdir", outputDir, "--tmpdir-prefix", tmpDir, "--tmp-outdir-prefix",
-                        workingDir, cwlFile));
+            Arrays.asList("toil-cwl-runner", "--bypass-file-store", "--logError", "--outdir", outputDir, "--tmpdir-prefix", tmpPath.toString(), "--tmp-outdir-prefix",
+                workingDir, cwlFile));
         jsonSettings.ifPresent(command::add);
         return command;
     }
diff --git a/dockstore-client/src/test/java/io/github/collaboratory/cwl/ToilLauncherIT.java b/dockstore-client/src/test/java/io/github/collaboratory/cwl/ToilLauncherIT.java
index 5f996f75e..7c28118b3 100644
--- a/dockstore-client/src/test/java/io/github/collaboratory/cwl/ToilLauncherIT.java
+++ b/dockstore-client/src/test/java/io/github/collaboratory/cwl/ToilLauncherIT.java
@@ -15,14 +15,16 @@
  */
 package io.github.collaboratory.cwl;
 
+import io.dockstore.common.ToilOnlyTest;
 import org.apache.commons.io.FileUtils;
-import org.junit.Ignore;
+import org.junit.experimental.categories.Category;
+import org.junit.jupiter.api.Tag;
 
 /**
  * @author dyuen
  */
-@Ignore
-// @Category(ToilOnlyTest.class)
+@Tag(ToilOnlyTest.NAME)
+@Category(ToilOnlyTest.class)
 public class ToilLauncherIT extends LauncherIT {
 
     public String getConfigFile() {
diff --git a/scripts/install-tests.sh b/scripts/install-tests.sh
index 579ee9307..589f22748 100755
--- a/scripts/install-tests.sh
+++ b/scripts/install-tests.sh
@@ -12,7 +12,7 @@ if [ "${TESTING_PROFILE}" = "unit-tests" ] || [ "${TESTING_PROFILE}" == "automat
 fi
 
 if [ "${TESTING_PROFILE}" = "toil-integration-tests" ]; then
-    pip3 install --user toil[cwl]==3.15.0
+    pip3 install --user toil[cwl]==7.0.0
 else
     pip3 install --user -r https://raw.githubusercontent.com/dockstore/dockstore/develop/dockstore-webservice/src/main/resources/requirements/1.15.0/requirements3.txt
 fi