DESCRIPTION

Package: xQTLbiolinks
Title: An R Package for Integrative Analysis of Quantitative Trait Locus Data of 'xQTL'
Version: 1.7.3
Authors@R: c(
    person(given = "Ruofan", family = "Ding",        email = "dingruofan1@foxmail.com",   role  = c("aut", "cre")),
    person(given = "Xudong", family = "Zou",        email = "zouxd@szbl.ac.cn",   role  = c("aut","ctb")),
    person(given = "Yangmei", family = "Qin",        email = "qinym@szbl.ac.cn",   role  = c("aut","ctb")),
    person(given = "Gao", family = "Wang",        email = "wang.gao@columbia.edu",   role  = c("aut","ctb")),
    person(given = "Lei", family = "Li",        email = "lei.li@szbl.ac.cn",   role  = c("aut","ctb", "cph"))
	)
Description: This package is a well-developed R package that enables users-customized data retrieval, pre-processing, analysis, and data visualization of molecular QTLs (eQTLs, sQTLs and 3'aQTLs) and gene expression data from public resources through the application programming interface <https://gtexportal.org/home/api-docs/index.html> of 'GTEx'. 
URL: https://github.com/dingruofan/xQTLbiolinks
BugReports: https://github.com/dingruofan/xQTLbiolinks/issues
License: GPL (>= 3)
Encoding: UTF-8
LazyData: true
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.2.3
Depends: 
    R (>= 4.2)
VignetteBuilder:
    knitr
Imports: 
    BiocGenerics,
    cowplot (>= 1.1.1),
    curl (>= 4.3.2),
    data.table (>= 1.14.2),
    DBI,
    SummarizedExperiment,
    GenomeInfoDb,
    GenomicFeatures,
    GenomicRanges,
    ggplot2 (>= 3.3.6),
    ggrepel,
    IRanges,
    jsonlite (>= 1.7.2),
    viridis,
    RMySQL,
    stringr (>= 1.4.0),
    utils (>= 4.0.3)
Suggests: 
    VariantAnnotation,
    TxDb.Hsapiens.UCSC.hg38.knownGene,
    PupillometryR,
    coloc,
    hyprcoloc,
    knitr,
    rtracklayer,
    usethis,
    ggridges,
    CMplot,
    R.utils,
	  ggforestplot