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New script: sample-reads-randomly.py which does a single pass random
subsample using reservoir sampling.
the version number is now only stored in one place
Makefile: new dist, cppcheck, pep8, and autopep8 targets for developers.
VERSION is now set by versioneer and exported to C/C++ code.
README switched from MarkDown to ReStructuredText format to clean up PyPI
listing. Install count badge added.
doc/: updates to how the scripts are called. Sphinx now pulls version
number from versioneer. C/Python integration is now partially documented.
Reference to bleeding-edge has been removed. Release instructions have been
clarified and simplified.
all python code in khmer/, scripts/, and tests/ should be PEP8 compliant now.
khmer/_khmermodule.cc has gotten a once-over with cpychecker. Type errors
were eliminated and the error checking has improved.
Several fixes motivated by the results of a Coverity C/C++ scan.
Tests that require greater than 0.5 gigabytes of memory are now annotated as
being 'highmem' and be skipped by changing two lines in setup.cfg
warnings about -Wstrict-prototypes will no longer appear
contributors to this release are: @ctb, @mr-c and @cswelcher.