From 1e01859a12c5065c3689eebc8bb5c01e93dbac3c Mon Sep 17 00:00:00 2001 From: diana chJ <122611454+dianichj@users.noreply.github.com> Date: Fri, 15 Nov 2024 22:05:06 +0100 Subject: [PATCH] Update workflows/scRNAseq/pseudobulk-worflow-decoupler-edger/pseudo-bulk_edgeR.ga Co-authored-by: Marius van den Beek --- .../pseudobulk-worflow-decoupler-edger/pseudo-bulk_edgeR.ga | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/workflows/scRNAseq/pseudobulk-worflow-decoupler-edger/pseudo-bulk_edgeR.ga b/workflows/scRNAseq/pseudobulk-worflow-decoupler-edger/pseudo-bulk_edgeR.ga index a7ff28d0a..6eefe3f6b 100644 --- a/workflows/scRNAseq/pseudobulk-worflow-decoupler-edger/pseudo-bulk_edgeR.ga +++ b/workflows/scRNAseq/pseudobulk-worflow-decoupler-edger/pseudo-bulk_edgeR.ga @@ -1,6 +1,6 @@ { "a_galaxy_workflow": "true", - "annotation": "Pseudobulk", + "annotation": "This workflow uses the decoupler tool in Galaxy to generate pseudobulk counts from an annotated AnnData file obtained from scRNA-seq analysis. Following the pseudobulk step, differential expression genes (DEG) are calculated using the edgeR tool. The workflow also includes data sanitation steps to ensure smooth operation of edgeR and minimizing potential issues. Additionally, a Volcano plot tool is used to visualize the results after the DEG analysis.", "comments": [], "creator": [ {