diff --git a/2019/01/07/example-post-1.html b/2019/01/07/example-post-1.html
index fe5a4fb..99b1e7f 100644
--- a/2019/01/07/example-post-1.html
+++ b/2019/01/07/example-post-1.html
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   <meta property="og:type" content="article">
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+  <meta property="article:modified_time" content="2024-01-02T18:32:59+00:00">
+  <meta name="revised" content="2024-01-02T18:32:59+00:00">
 
 
 <script type="application/ld+json">
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     "name": "Example post 1",
     "description": "This is the website for the Dashnow Lab. We do computational genomics in the Department of Biomedical Informatics at the University of Colorado Anschutz Medical Campus.",
diff --git a/2021/09/30/example-post-2.html b/2021/09/30/example-post-2.html
index 03110bd..1b8c4bb 100644
--- a/2021/09/30/example-post-2.html
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@@ -62,10 +62,10 @@
 
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   <meta property="og:type" content="article">
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 <script type="application/ld+json">
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-      "dateModified": "2024-01-02T18:13:33+00:00",
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     "name": "Example post 2",
     "description": "This is the website for the Dashnow Lab. We do computational genomics in the Department of Biomedical Informatics at the University of Colorado Anschutz Medical Campus.",
diff --git a/2023/02/23/example-post-3.html b/2023/02/23/example-post-3.html
index 743690a..1c9cc99 100644
--- a/2023/02/23/example-post-3.html
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@@ -62,10 +62,10 @@
 
   <meta name="author" content="john-doe">
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-  <meta property="og:updated_time" content="2024-01-02T18:13:33+00:00">
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 <script type="application/ld+json">
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-      "dateModified": "2024-01-02T18:13:33+00:00",
+      "dateModified": "2024-01-02T18:32:59+00:00",
     
     "name": "Example post 3",
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diff --git a/feed.xml b/feed.xml
index 4e21d1a..afecdc9 100644
--- a/feed.xml
+++ b/feed.xml
@@ -1 +1 @@
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\ No newline at end of file
+<?xml version="1.0" encoding="utf-8"?><feed xmlns="http://www.w3.org/2005/Atom" ><generator uri="https://jekyllrb.com/" version="4.3.2">Jekyll</generator><link href="/feed.xml" rel="self" type="application/atom+xml" /><link href="/" rel="alternate" type="text/html" /><updated>2024-01-02T18:34:43+00:00</updated><id>/feed.xml</id><title type="html">Dashnow Lab</title><subtitle>This is the website for the Dashnow Lab. We do computational genomics in the Department of Biomedical Informatics at the University of Colorado Anschutz Medical Campus.</subtitle><entry><title type="html">Example post 3</title><link href="/2023/02/23/example-post-3.html" rel="alternate" type="text/html" title="Example post 3" /><published>2023-02-23T00:00:00+00:00</published><updated>2024-01-02T18:32:59+00:00</updated><id>/2023/02/23/example-post-3</id><content type="html" xml:base="/2023/02/23/example-post-3.html"><![CDATA[<p>Lorem ipsum dolor sit amet, consectetur adipiscing elit, sed do eiusmod tempor incididunt ut labore et dolore magna aliqua.</p>]]></content><author><name>john-doe</name></author><category term="biology," /><category term="medicine" /><summary type="html"><![CDATA[Lorem ipsum dolor sit amet, consectetur adipiscing elit, sed do eiusmod tempor incididunt ut labore et dolore magna aliqua.]]></summary></entry><entry><title type="html">Example post 2</title><link href="/2021/09/30/example-post-2.html" rel="alternate" type="text/html" title="Example post 2" /><published>2021-09-30T00:00:00+00:00</published><updated>2024-01-02T18:32:59+00:00</updated><id>/2021/09/30/example-post-2</id><content type="html" xml:base="/2021/09/30/example-post-2.html"><![CDATA[<p>Lorem ipsum dolor sit amet, consectetur adipiscing elit, sed do eiusmod tempor incididunt ut labore et dolore magna aliqua.</p>]]></content><author><name>jane-smith</name></author><summary type="html"><![CDATA[Lorem ipsum dolor sit amet, consectetur adipiscing elit, sed do eiusmod tempor incididunt ut labore et dolore magna aliqua.]]></summary></entry><entry><title type="html">Example post 1</title><link href="/2019/01/07/example-post-1.html" rel="alternate" type="text/html" title="Example post 1" /><published>2019-01-07T00:00:00+00:00</published><updated>2024-01-02T18:32:59+00:00</updated><id>/2019/01/07/example-post-1</id><content type="html" xml:base="/2019/01/07/example-post-1.html"><![CDATA[<p>Lorem ipsum dolor sit amet, consectetur adipiscing elit, sed do eiusmod tempor incididunt ut labore et dolore magna aliqua.</p>]]></content><author><name>sarah-johnson</name></author><category term="biology" /><category term="medicine" /><category term="big data" /><summary type="html"><![CDATA[Lorem ipsum dolor sit amet, consectetur adipiscing elit, sed do eiusmod tempor incididunt ut labore et dolore magna aliqua.]]></summary></entry></feed>
\ No newline at end of file
diff --git a/research/index.html b/research/index.html
index 0178c41..1e15dcf 100644
--- a/research/index.html
+++ b/research/index.html
@@ -525,12 +525,12 @@ <h2 id="all">All</h2>
 
 <div class="search-info"></div>
 
-<h3 id="2023">2023</h3>
+<h3 id="2024">2024</h3>
 
 <div class="citation">
   
-    <a href="https://doi.org/gr5hb5" class="citation-image" aria-label="MyGeneset.info: an interactive and programmatic platform for community-curated and user-created collections of genes">
-      <img src="" alt="MyGeneset.info: an interactive and programmatic platform for community-curated and user-created collections of genes" loading="lazy" onerror="this.src = '/images/fallback.svg'; this.onerror = null;">
+    <a href="https://github.com/elegant-scipy/elegant-scipy" class="citation-image" aria-label="Elegant SciPy">
+      <img src="" alt="Elegant SciPy" loading="lazy" onerror="this.src = '/images/fallback.svg'; this.onerror = null;">
     </a>
   
 
@@ -538,20 +538,20 @@ <h3 id="2023">2023</h3>
     
     
 
-    <a href="https://doi.org/gr5hb5" class="citation-title">
-      MyGeneset.info: an interactive and programmatic platform for community-curated and user-created collections of genes
+    <a href="https://github.com/elegant-scipy/elegant-scipy" class="citation-title">
+      Elegant SciPy
     </a>
 
     <div class="citation-authors" tabindex="0">
-      Ricardo Avila, Vincent Rubinetti, Xinghua Zhou, Dongbo Hu, Zhongchao Qian, Marco Alvarado Cano, Everaldo Rodolpho, Ginger Tsueng, Casey Greene, Chunlei Wu
+      Juan Nunez-Iglesias, Stéfan Van der Walt, Harriet Dashnow
     </div>
 
     <div class="citation-details">
-      Nucleic Acids Research
+      O'Reilly Media, Inc.
         ·  
-      18 Apr 2023
+      02 Jan 2024
         ·  
-      doi:10.1093/nar/gkad289
+      isbn:9781491922941
     </div>
 
     
@@ -566,8 +566,8 @@ <h3 id="2023">2023</h3>
 
 <div class="citation">
   
-    <a href="https://doi.org/grmcb9" class="citation-image" aria-label="Hetnet connectivity search provides rapid insights into how two biomedical entities are related">
-      <img src="" alt="Hetnet connectivity search provides rapid insights into how two biomedical entities are related" loading="lazy" onerror="this.src = '/images/fallback.svg'; this.onerror = null;">
+    <a href="https://doi.org/gtbst8" class="citation-image" aria-label="Characterization and visualization of tandem repeats at genome scale">
+      <img src="" alt="Characterization and visualization of tandem repeats at genome scale" loading="lazy" onerror="this.src = '/images/fallback.svg'; this.onerror = null;">
     </a>
   
 
@@ -575,20 +575,20 @@ <h3 id="2023">2023</h3>
     
     
 
-    <a href="https://doi.org/grmcb9" class="citation-title">
-      Hetnet connectivity search provides rapid insights into how two biomedical entities are related
+    <a href="https://doi.org/gtbst8" class="citation-title">
+      Characterization and visualization of tandem repeats at genome scale
     </a>
 
-    <div class="citation-authors" data-tooltip="Daniel S. Himmelstein, Michael Zietz, Vincent Rubinetti, Kyle Kloster, Benjamin J. Heil, Faisal Alquaddoomi, Dongbo Hu, David N. Nicholson, Yun Hao, Blair D. Sullivan, Michael W. Nagle, Casey S. Greene " tabindex="0">
-      Daniel S. Himmelstein, Michael Zietz, Vincent Rubinetti, Kyle Kloster, Benjamin J. Heil, ..., David N. Nicholson, Yun Hao, Blair D. Sullivan, Michael W. Nagle, Casey S. Greene
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+      Egor Dolzhenko, Adam English, Harriet Dashnow, Guilherme De Sena Brandine, Tom Mokveld, ..., Stephan Zuchner, Tomi Pastinen, Aaron R. Quinlan, Fritz J. Sedlazeck, Michael A. Eberle
     </div>
 
     <div class="citation-details">
-      Cold Spring Harbor Laboratory
+      Nature Biotechnology
         ·  
-      07 Jan 2023
+      02 Jan 2024
         ·  
-      doi:10.1101/2023.01.05.522941
+      doi:10.1038/s41587-023-02057-3
     </div>
 
     
@@ -605,8 +605,8 @@ <h3 id="2022">2022</h3>
 
 <div class="citation">
   
-    <a href="https://doi.org/gsd85n" class="citation-image" aria-label="Hetnet connectivity search provides rapid insights into how biomedical entities are related">
-      <img src="" alt="Hetnet connectivity search provides rapid insights into how biomedical entities are related" loading="lazy" onerror="this.src = '/images/fallback.svg'; this.onerror = null;">
+    <a href="https://doi.org/gsrsm2" class="citation-image" aria-label="STRling: a k-mer counting approach that detects short tandem repeat expansions at known and novel loci">
+      <img src="" alt="STRling: a k-mer counting approach that detects short tandem repeat expansions at known and novel loci" loading="lazy" onerror="this.src = '/images/fallback.svg'; this.onerror = null;">
     </a>
   
 
@@ -614,20 +614,20 @@ <h3 id="2022">2022</h3>
     
     
 
-    <a href="https://doi.org/gsd85n" class="citation-title">
-      Hetnet connectivity search provides rapid insights into how biomedical entities are related
+    <a href="https://doi.org/gsrsm2" class="citation-title">
+      STRling: a k-mer counting approach that detects short tandem repeat expansions at known and novel loci
     </a>
 
-    <div class="citation-authors" data-tooltip="Daniel S Himmelstein, Michael Zietz, Vincent Rubinetti, Kyle Kloster, Benjamin J Heil, Faisal Alquaddoomi, Dongbo Hu, David N Nicholson, Yun Hao, Blair D Sullivan, Michael W Nagle, Casey S Greene " tabindex="0">
-      Daniel S Himmelstein, Michael Zietz, Vincent Rubinetti, Kyle Kloster, Benjamin J Heil, ..., David N Nicholson, Yun Hao, Blair D Sullivan, Michael W Nagle, Casey S Greene
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+      Harriet Dashnow, Brent S. Pedersen, Laurel Hiatt, Joe Brown, Sarah J. Beecroft, ..., Miriam J. Rodrigues, Mark Davis, Heather C. Mefford, Nigel G. Laing, Aaron R. Quinlan
     </div>
 
     <div class="citation-details">
-      GigaScience
+      Genome Biology
         ·  
-      28 Dec 2022
+      14 Dec 2022
         ·  
-      doi:10.1093/gigascience/giad047
+      doi:10.1186/s13059-022-02826-4
     </div>
 
     
@@ -640,120 +640,283 @@ <h3 id="2022">2022</h3>
   </div>
 </div>
 
-<h3 id="2020">2020</h3>
+<h3 id="2021">2021</h3>
 
 <div class="citation">
   
-    <a href="https://doi.org/c7np" class="citation-image" aria-label="Open collaborative writing with Manubot">
-      <img src="https://journals.plos.org/ploscompbiol/article/figure/image?size=inline&id=info:doi/10.1371/journal.pcbi.1007128.g001&amp;rev=2" alt="Open collaborative writing with Manubot" loading="lazy" onerror="this.src = '/images/fallback.svg'; this.onerror = null;">
+    <a href="https://doi.org/gsrsm3" class="citation-image" aria-label="Effective variant filtering and expected candidate variant yield in studies of rare human disease">
+      <img src="" alt="Effective variant filtering and expected candidate variant yield in studies of rare human disease" loading="lazy" onerror="this.src = '/images/fallback.svg'; this.onerror = null;">
     </a>
   
 
   <div class="citation-text">
     
-    <i class="icon fa-solid fa-scroll"></i>
+    
 
-    <a href="https://doi.org/c7np" class="citation-title">
-      Open collaborative writing with Manubot
+    <a href="https://doi.org/gsrsm3" class="citation-title">
+      Effective variant filtering and expected candidate variant yield in studies of rare human disease
     </a>
 
-    <div class="citation-authors" tabindex="0">
-      Daniel S. Himmelstein, Vincent Rubinetti, David R. Slochower, Dongbo Hu, Venkat S. Malladi, Casey S. Greene, Anthony Gitter
+    <div class="citation-authors" data-tooltip="Brent S. Pedersen, Joe M. Brown, Harriet Dashnow, Amelia D. Wallace, Matt Velinder, Martin Tristani-Firouzi, Joshua D. Schiffman, Tatiana Tvrdik, Rong Mao, D. Hunter Best, Pinar Bayrak-Toydemir, Aaron R. Quinlan " tabindex="0">
+      Brent S. Pedersen, Joe M. Brown, Harriet Dashnow, Amelia D. Wallace, Matt Velinder, ..., Tatiana Tvrdik, Rong Mao, D. Hunter Best, Pinar Bayrak-Toydemir, Aaron R. Quinlan
     </div>
 
     <div class="citation-details">
-      PLOS Computational Biology
+      npj Genomic Medicine
         ·  
-      04 Dec 2020
+      15 Jul 2021
         ·  
-      doi:10.1371/journal.pcbi.1007128
+      doi:10.1038/s41525-021-00227-3
     </div>
 
     
       
-        <div class="citation-description">
-          Lorem ipsum <em>dolor</em> <strong>sit amet</strong>, consectetur adipiscing elit, sed do eiusmod tempor incididunt ut labore et dolore magna aliqua.
 
-        </div>
       
 
       
-        <div class="citation-buttons">
-          
-            
+    
+  </div>
+</div>
 
+<h3 id="2019">2019</h3>
 
+<div class="citation">
+  
+    <a href="https://doi.org/ggh6r4" class="citation-image" aria-label="Bionitio: demonstrating and facilitating best practices for bioinformatics command-line software">
+      <img src="" alt="Bionitio: demonstrating and facilitating best practices for bioinformatics command-line software" loading="lazy" onerror="this.src = '/images/fallback.svg'; this.onerror = null;">
+    </a>
+  
 
-  <div class="button-wrapper">
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+  <div class="citation-text">
+    
+    
+
+    <a href="https://doi.org/ggh6r4" class="citation-title">
+      Bionitio: demonstrating and facilitating best practices for bioinformatics command-line software
+    </a>
+
+    <div class="citation-authors" tabindex="0">
+      Peter Georgeson, Anna Syme, Clare Sloggett, Jessica Chung, Harriet Dashnow, Michael Milton, Andrew Lonsdale, David Powell, Torsten Seemann, Bernard Pope
+    </div>
+
+    <div class="citation-details">
+      GigaScience
+        ·  
+      01 Sep 2019
+        ·  
+      doi:10.1093/gigascience/giz109
+    </div>
+
+    
       
-        <span>Manubot</span>
+
       
-    </a>
+
+      
+    
   </div>
+</div>
 
+<div class="citation">
+  
+    <a href="https://doi.org/gkvmjw" class="citation-image" aria-label="Pooled-parent exome sequencing to prioritise &lt;i&gt;de novo&lt;/i&gt; variants in genetic disease">
+      <img src="" alt="Pooled-parent exome sequencing to prioritise &lt;i&gt;de novo&lt;/i&gt; variants in genetic disease" loading="lazy" onerror="this.src = '/images/fallback.svg'; this.onerror = null;">
+    </a>
+  
 
-          
-            
+  <div class="citation-text">
+    
+    
 
+    <a href="https://doi.org/gkvmjw" class="citation-title">
+      Pooled-parent exome sequencing to prioritise <i>de novo</i> variants in genetic disease
+    </a>
 
+    <div class="citation-authors" tabindex="0">
+      Harriet Dashnow, Katrina M. Bell, Zornitza Stark, Tiong Y. Tan, Susan M. White, Alicia Oshlack
+    </div>
 
-  <div class="button-wrapper">
-    <a class="button" href="https://github.com/greenelab/meta-review" data-tooltip="Source code" data-style="bare" aria-label="Source code">
-      <i class="icon fa-solid fa-code"></i>
+    <div class="citation-details">
+      Cold Spring Harbor Laboratory
+        ·  
+      07 Apr 2019
+        ·  
+      doi:10.1101/601740
+    </div>
+
+    
       
-        <span>Manuscript Source</span>
+
       
-    </a>
+
+      
+    
   </div>
+</div>
 
+<h3 id="2018">2018</h3>
 
-          
-            
+<div class="citation">
+  
+    <a href="https://doi.org/gd49p5" class="citation-image" aria-label="STRetch: detecting and discovering pathogenic short tandem repeat expansions">
+      <img src="" alt="STRetch: detecting and discovering pathogenic short tandem repeat expansions" loading="lazy" onerror="this.src = '/images/fallback.svg'; this.onerror = null;">
+    </a>
+  
+
+  <div class="citation-text">
+    
+    
 
+    <a href="https://doi.org/gd49p5" class="citation-title">
+      STRetch: detecting and discovering pathogenic short tandem repeat expansions
+    </a>
 
+    <div class="citation-authors" data-tooltip="Harriet Dashnow, Monkol Lek, Belinda Phipson, Andreas Halman, Simon Sadedin, Andrew Lonsdale, Mark Davis, Phillipa Lamont, Joshua S. Clayton, Nigel G. Laing, Daniel G. MacArthur, Alicia Oshlack " tabindex="0">
+      Harriet Dashnow, Monkol Lek, Belinda Phipson, Andreas Halman, Simon Sadedin, ..., Phillipa Lamont, Joshua S. Clayton, Nigel G. Laing, Daniel G. MacArthur, Alicia Oshlack
+    </div>
 
-  <div class="button-wrapper">
-    <a class="button" href="http://manubot.org/" data-tooltip="Website" data-style="bare" aria-label="Website">
-      <i class="icon fa-solid fa-globe"></i>
+    <div class="citation-details">
+      Genome Biology
+        ·  
+      21 Aug 2018
+        ·  
+      doi:10.1186/s13059-018-1505-2
+    </div>
+
+    
       
-        <span>Website</span>
+
       
-    </a>
+
+      
+    
   </div>
+</div>
 
+<h3 id="2017">2017</h3>
+
+<div class="citation">
+  
+    <a href="https://doi.org/gbr77c" class="citation-image" aria-label="A clinically driven variant prioritization framework outperforms purely computational approaches for the diagnostic analysis of singleton WES data">
+      <img src="" alt="A clinically driven variant prioritization framework outperforms purely computational approaches for the diagnostic analysis of singleton WES data" loading="lazy" onerror="this.src = '/images/fallback.svg'; this.onerror = null;">
+    </a>
+  
+
+  <div class="citation-text">
+    
+    
+
+    <a href="https://doi.org/gbr77c" class="citation-title">
+      A clinically driven variant prioritization framework outperforms purely computational approaches for the diagnostic analysis of singleton WES data
+    </a>
+
+    <div class="citation-authors" data-tooltip="Zornitza Stark, Harriet Dashnow, Sebastian Lunke, Tiong Y Tan, Alison Yeung, Simon Sadedin, Natalie Thorne, Ivan Macciocca, Clara Gaff, Alicia Oshlack, Susan M White, Paul A James " tabindex="0">
+      Zornitza Stark, Harriet Dashnow, Sebastian Lunke, Tiong Y Tan, Alison Yeung, ..., Ivan Macciocca, Clara Gaff, Alicia Oshlack, Susan M White, Paul A James
+    </div>
+
+    <div class="citation-details">
+      European Journal of Human Genetics
+        ·  
+      23 Aug 2017
+        ·  
+      doi:10.1038/ejhg.2017.123
+    </div>
 
-          
-        </div>
+    
       
 
       
-        
 
+      
+    
+  </div>
+</div>
+
+<h3 id="2016">2016</h3>
+
+<div class="citation">
+  
+    <a href="https://doi.org/ghcwtj" class="citation-image" aria-label="Ten Simple Rules for a Bioinformatics Journal Club">
+      <img src="" alt="Ten Simple Rules for a Bioinformatics Journal Club" loading="lazy" onerror="this.src = '/images/fallback.svg'; this.onerror = null;">
+    </a>
+  
 
-  <div class="tags" data-repo="greenelab/meta-review" data-link="/research/">
+  <div class="citation-text">
     
-      <a href="/research/?search=%22tag:%20open%20science%22" class="tag" data-tooltip='Show items with the tag "open science"'>
-        open science
-      </a>
     
-      <a href="/research/?search=%22tag:%20collaboration%22" class="tag" data-tooltip='Show items with the tag "collaboration"'>
-        collaboration
-      </a>
+
+    <a href="https://doi.org/ghcwtj" class="citation-title">
+      Ten Simple Rules for a Bioinformatics Journal Club
+    </a>
+
+    <div class="citation-authors" tabindex="0">
+      Andrew Lonsdale, Jocelyn Sietsma Penington, Timothy Rice, Michael Walker, Harriet Dashnow
+    </div>
+
+    <div class="citation-details">
+      PLOS Computational Biology
+        ·  
+      28 Jan 2016
+        ·  
+      doi:10.1371/journal.pcbi.1004526
+    </div>
+
+    
+      
+
+      
+
+      
     
   </div>
+</div>
+
+<h3 id="2015">2015</h3>
+
+<div class="citation">
+  
+    <a href="https://doi.org/gsrsm4" class="citation-image" aria-label="Cpipe: a shared variant detection pipeline designed for diagnostic settings">
+      <img src="" alt="Cpipe: a shared variant detection pipeline designed for diagnostic settings" loading="lazy" onerror="this.src = '/images/fallback.svg'; this.onerror = null;">
+    </a>
+  
 
+  <div class="citation-text">
+    
+    
+
+    <a href="https://doi.org/gsrsm4" class="citation-title">
+      Cpipe: a shared variant detection pipeline designed for diagnostic settings
+    </a>
+
+    <div class="citation-authors" data-tooltip="Simon P. Sadedin, Harriet Dashnow, Paul A. James, Melanie Bahlo, Denis C. Bauer, Andrew Lonie, Sebastian Lunke, Ivan Macciocca, Jason P. Ross, Kirby R. Siemering, Zornitza Stark, Susan M. White, Graham Taylor, Clara Gaff, Alicia Oshlack, Natalie P. Thorne " tabindex="0">
+      Simon P. Sadedin, Harriet Dashnow, Paul A. James, Melanie Bahlo, Denis C. Bauer, ..., Susan M. White, Graham Taylor, Clara Gaff, Alicia Oshlack, Natalie P. Thorne
+    </div>
+
+    <div class="citation-details">
+      Genome Medicine
+        ·  
+      10 Jul 2015
+        ·  
+      doi:10.1186/s13073-015-0191-x
+    </div>
+
+    
+      
+
+      
 
       
     
   </div>
 </div>
 
+<h3 id="2014">2014</h3>
+
 <div class="citation">
   
-    <a href="https://doi.org/gg2mjh" class="citation-image" aria-label="Compressing gene expression data using multiple latent space dimensionalities learns complementary biological representations">
-      <img src="" alt="Compressing gene expression data using multiple latent space dimensionalities learns complementary biological representations" loading="lazy" onerror="this.src = '/images/fallback.svg'; this.onerror = null;">
+    <a href="https://doi.org/gsrsm5" class="citation-image" aria-label="Data Interlocking: Coupling Analytics to the Data">
+      <img src="" alt="Data Interlocking: Coupling Analytics to the Data" loading="lazy" onerror="this.src = '/images/fallback.svg'; this.onerror = null;">
     </a>
   
 
@@ -761,20 +924,20 @@ <h3 id="2020">2020</h3>
     
     
 
-    <a href="https://doi.org/gg2mjh" class="citation-title">
-      Compressing gene expression data using multiple latent space dimensionalities learns complementary biological representations
+    <a href="https://doi.org/gsrsm5" class="citation-title">
+      Data Interlocking: Coupling Analytics to the Data
     </a>
 
     <div class="citation-authors" tabindex="0">
-      Gregory P. Way, Michael Zietz, Vincent Rubinetti, Daniel S. Himmelstein, Casey S. Greene
+      Yousef Kowsar, Harriet Dashnow, Andrew Lonie
     </div>
 
     <div class="citation-details">
-      Genome Biology
+      2014 IEEE/ACM 7th International Conference on Utility and Cloud Computing
         ·  
-      11 May 2020
+      01 Dec 2014
         ·  
-      doi:10.1186/s13059-020-02021-3
+      doi:10.1109/ucc.2014.113
     </div>
 
     
@@ -789,8 +952,8 @@ <h3 id="2020">2020</h3>
 
 <div class="citation">
   
-    <a href="https://doi.org/gg7m48" class="citation-image" aria-label="Constructing knowledge graphs and their biomedical applications">
-      <img src="https://ars.els-cdn.com/content/image/1-s2.0-S2001037020302804-gr1.jpg" alt="Constructing knowledge graphs and their biomedical applications" loading="lazy" onerror="this.src = '/images/fallback.svg'; this.onerror = null;">
+    <a href="https://doi.org/gf9sd9" class="citation-image" aria-label="SRST2: Rapid genomic surveillance for public health and hospital microbiology labs">
+      <img src="" alt="SRST2: Rapid genomic surveillance for public health and hospital microbiology labs" loading="lazy" onerror="this.src = '/images/fallback.svg'; this.onerror = null;">
     </a>
   
 
@@ -798,20 +961,20 @@ <h3 id="2020">2020</h3>
     
     
 
-    <a href="https://doi.org/gg7m48" class="citation-title">
-      Constructing knowledge graphs and their biomedical applications
+    <a href="https://doi.org/gf9sd9" class="citation-title">
+      SRST2: Rapid genomic surveillance for public health and hospital microbiology labs
     </a>
 
     <div class="citation-authors" tabindex="0">
-      David N. Nicholson, Casey S. Greene
+      Michael Inouye, Harriet Dashnow, Lesley-Ann Raven, Mark B Schultz, Bernard J Pope, Takehiro Tomita, Justin Zobel, Kathryn E Holt
     </div>
 
     <div class="citation-details">
-      Computational and Structural Biotechnology Journal
+      Genome Medicine
         ·  
-      01 Jan 2020
+      20 Nov 2014
         ·  
-      doi:10.1016/j.csbj.2020.05.017
+      doi:10.1186/s13073-014-0090-6
     </div>
 
     
@@ -824,12 +987,10 @@ <h3 id="2020">2020</h3>
   </div>
 </div>
 
-<h3 id="2019">2019</h3>
-
 <div class="citation">
   
-    <a href="https://doi.org/gfxjxf" class="citation-image" aria-label="Sequential compression of gene expression across dimensionalities and methods reveals no single best method or dimensionality">
-      <img src="" alt="Sequential compression of gene expression across dimensionalities and methods reveals no single best method or dimensionality" loading="lazy" onerror="this.src = '/images/fallback.svg'; this.onerror = null;">
+    <a href="https://doi.org/gfrj9s" class="citation-image" aria-label="Ten Simple Rules for Writing a PLOS Ten Simple Rules Article">
+      <img src="" alt="Ten Simple Rules for Writing a PLOS Ten Simple Rules Article" loading="lazy" onerror="this.src = '/images/fallback.svg'; this.onerror = null;">
     </a>
   
 
@@ -837,20 +998,20 @@ <h3 id="2019">2019</h3>
     
     
 
-    <a href="https://doi.org/gfxjxf" class="citation-title">
-      Sequential compression of gene expression across dimensionalities and methods reveals no single best method or dimensionality
+    <a href="https://doi.org/gfrj9s" class="citation-title">
+      Ten Simple Rules for Writing a PLOS Ten Simple Rules Article
     </a>
 
     <div class="citation-authors" tabindex="0">
-      Gregory P. Way, Michael Zietz, Vincent Rubinetti, Daniel S. Himmelstein, Casey S. Greene
+      Harriet Dashnow, Andrew Lonsdale, Philip E. Bourne
     </div>
 
     <div class="citation-details">
-      Cold Spring Harbor Laboratory
+      PLoS Computational Biology
         ·  
-      11 Mar 2019
+      23 Oct 2014
         ·  
-      doi:10.1101/573782
+      doi:10.1371/journal.pcbi.1003858
     </div>
 
     
@@ -863,12 +1024,12 @@ <h3 id="2019">2019</h3>
   </div>
 </div>
 
-<h3 id="2018">2018</h3>
+<h3 id="2012">2012</h3>
 
 <div class="citation">
   
-    <a href="https://doi.org/ckcj" class="citation-image" aria-label="Sci-Hub provides access to nearly all scholarly literature">
-      <img src="https://iiif.elifesciences.org/lax:32822%2Felife-32822-fig8-v3.tif/full/863,/0/default.webp" alt="Sci-Hub provides access to nearly all scholarly literature" loading="lazy" onerror="this.src = '/images/fallback.svg'; this.onerror = null;">
+    <a href="https://doi.org/gsrsm6" class="citation-image" aria-label="Development of Transgenic Mice Containing an Introduced Stop Codon on the Human Methylmalonyl-CoA Mutase Locus">
+      <img src="" alt="Development of Transgenic Mice Containing an Introduced Stop Codon on the Human Methylmalonyl-CoA Mutase Locus" loading="lazy" onerror="this.src = '/images/fallback.svg'; this.onerror = null;">
     </a>
   
 
@@ -876,20 +1037,20 @@ <h3 id="2018">2018</h3>
     
     
 
-    <a href="https://doi.org/ckcj" class="citation-title">
-      Sci-Hub provides access to nearly all scholarly literature
+    <a href="https://doi.org/gsrsm6" class="citation-title">
+      Development of Transgenic Mice Containing an Introduced Stop Codon on the Human Methylmalonyl-CoA Mutase Locus
     </a>
 
     <div class="citation-authors" tabindex="0">
-      Daniel S Himmelstein, Ariel Rodriguez Romero, Jacob G Levernier, Thomas Anthony Munro, Stephen Reid McLaughlin, Bastian Greshake Tzovaras, Casey S Greene
+      Nicole E. Buck, Harriet Dashnow, James J. Pitt, Leonie R. Wood, Heidi L. Peters
     </div>
 
     <div class="citation-details">
-      eLife
+      PLoS ONE
         ·  
-      01 Mar 2018
+      14 Sep 2012
         ·  
-      doi:10.7554/eLife.32822
+      doi:10.1371/journal.pone.0044974
     </div>
 
     
diff --git a/sitemap.xml b/sitemap.xml
index f32134d..d6de076 100644
--- a/sitemap.xml
+++ b/sitemap.xml
@@ -2,62 +2,62 @@
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 <url>
 <loc>/members/harriet-dashnow.html</loc>
-<lastmod>2024-01-02T18:13:33+00:00</lastmod>
+<lastmod>2024-01-02T18:32:59+00:00</lastmod>
 </url>
 <url>
 <loc>/members/jane-smith.html</loc>
-<lastmod>2024-01-02T18:13:33+00:00</lastmod>
+<lastmod>2024-01-02T18:32:59+00:00</lastmod>
 </url>
 <url>
 <loc>/members/john-doe.html</loc>
-<lastmod>2024-01-02T18:13:33+00:00</lastmod>
+<lastmod>2024-01-02T18:32:59+00:00</lastmod>
 </url>
 <url>
 <loc>/members/laurel-hiatt.html</loc>
-<lastmod>2024-01-02T18:13:33+00:00</lastmod>
+<lastmod>2024-01-02T18:32:59+00:00</lastmod>
 </url>
 <url>
 <loc>/members/sarah-johnson.html</loc>
-<lastmod>2024-01-02T18:13:33+00:00</lastmod>
+<lastmod>2024-01-02T18:32:59+00:00</lastmod>
 </url>
 <url>
 <loc>/2019/01/07/example-post-1.html</loc>
-<lastmod>2024-01-02T18:13:33+00:00</lastmod>
+<lastmod>2024-01-02T18:32:59+00:00</lastmod>
 </url>
 <url>
 <loc>/2021/09/30/example-post-2.html</loc>
-<lastmod>2024-01-02T18:13:33+00:00</lastmod>
+<lastmod>2024-01-02T18:32:59+00:00</lastmod>
 </url>
 <url>
 <loc>/2023/02/23/example-post-3.html</loc>
-<lastmod>2024-01-02T18:13:33+00:00</lastmod>
+<lastmod>2024-01-02T18:32:59+00:00</lastmod>
 </url>
 <url>
 <loc>/research/</loc>
-<lastmod>2024-01-02T18:13:33+00:00</lastmod>
+<lastmod>2024-01-02T18:32:59+00:00</lastmod>
 </url>
 <url>
 <loc>/blog/</loc>
-<lastmod>2024-01-02T18:13:33+00:00</lastmod>
+<lastmod>2024-01-02T18:32:59+00:00</lastmod>
 </url>
 <url>
 <loc>/contact/</loc>
-<lastmod>2024-01-02T18:13:33+00:00</lastmod>
+<lastmod>2024-01-02T18:32:59+00:00</lastmod>
 </url>
 <url>
 <loc>/projects/</loc>
-<lastmod>2024-01-02T18:13:33+00:00</lastmod>
+<lastmod>2024-01-02T18:32:59+00:00</lastmod>
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 <url>
 <loc>/team/</loc>
-<lastmod>2024-01-02T18:13:33+00:00</lastmod>
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 <url>
 <loc>/</loc>
-<lastmod>2024-01-02T18:13:33+00:00</lastmod>
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 </url>
 <url>
 <loc>/testbed.html</loc>
-<lastmod>2024-01-02T18:13:33+00:00</lastmod>
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 </url>
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diff --git a/testbed.html b/testbed.html
index 6b6d1b8..4e18eee 100644
--- a/testbed.html
+++ b/testbed.html
@@ -1046,7 +1046,7 @@ <h2 id="list">List</h2>
 
 <h3 id="list-citations">List citations</h3>
 
-<h3 id="2023">2023</h3>
+<h3 id="2024">2024</h3>
 
 <div class="citation">
   
@@ -1055,20 +1055,20 @@ <h3 id="2023">2023</h3>
     
     
 
-    <a href="https://doi.org/gr5hb5" class="citation-title">
-      MyGeneset.info: an interactive and programmatic platform for community-curated and user-created collections of genes
+    <a href="https://github.com/elegant-scipy/elegant-scipy" class="citation-title">
+      Elegant SciPy
     </a>
 
     <div class="citation-authors" tabindex="0">
-      Ricardo Avila, Vincent Rubinetti, Xinghua Zhou, Dongbo Hu, Zhongchao Qian, Marco Alvarado Cano, Everaldo Rodolpho, Ginger Tsueng, Casey Greene, Chunlei Wu
+      Juan Nunez-Iglesias, Stéfan Van der Walt, Harriet Dashnow
     </div>
 
     <div class="citation-details">
-      Nucleic Acids Research
+      O'Reilly Media, Inc.
         ·  
-      18 Apr 2023
+      02 Jan 2024
         ·  
-      doi:10.1093/nar/gkad289
+      isbn:9781491922941
     </div>
 
     
@@ -1082,20 +1082,20 @@ <h3 id="2023">2023</h3>
     
     
 
-    <a href="https://doi.org/grmcb9" class="citation-title">
-      Hetnet connectivity search provides rapid insights into how two biomedical entities are related
+    <a href="https://doi.org/gtbst8" class="citation-title">
+      Characterization and visualization of tandem repeats at genome scale
     </a>
 
-    <div class="citation-authors" data-tooltip="Daniel S. Himmelstein, Michael Zietz, Vincent Rubinetti, Kyle Kloster, Benjamin J. Heil, Faisal Alquaddoomi, Dongbo Hu, David N. Nicholson, Yun Hao, Blair D. Sullivan, Michael W. Nagle, Casey S. Greene " tabindex="0">
-      Daniel S. Himmelstein, Michael Zietz, Vincent Rubinetti, Kyle Kloster, Benjamin J. Heil, ..., David N. Nicholson, Yun Hao, Blair D. Sullivan, Michael W. Nagle, Casey S. Greene
+    <div class="citation-authors" data-tooltip="Egor Dolzhenko, Adam English, Harriet Dashnow, Guilherme De Sena Brandine, Tom Mokveld, William J. Rowell, Caitlin Karniski, Zev Kronenberg, Matt C. Danzi, Warren A. Cheung, Chengpeng Bi, Emily Farrow, Aaron Wenger, Khi Pin Chua, Verónica Martínez-Cerdeño, Trevor D. Bartley, Peng Jin, David L. Nelson, Stephan Zuchner, Tomi Pastinen, Aaron R. Quinlan, Fritz J. Sedlazeck, Michael A. Eberle " tabindex="0">
+      Egor Dolzhenko, Adam English, Harriet Dashnow, Guilherme De Sena Brandine, Tom Mokveld, ..., Stephan Zuchner, Tomi Pastinen, Aaron R. Quinlan, Fritz J. Sedlazeck, Michael A. Eberle
     </div>
 
     <div class="citation-details">
-      Cold Spring Harbor Laboratory
+      Nature Biotechnology
         ·  
-      07 Jan 2023
+      02 Jan 2024
         ·  
-      doi:10.1101/2023.01.05.522941
+      doi:10.1038/s41587-023-02057-3
     </div>
 
     
@@ -1111,49 +1111,78 @@ <h3 id="2022">2022</h3>
     
     
 
-    <a href="https://doi.org/gsd85n" class="citation-title">
-      Hetnet connectivity search provides rapid insights into how biomedical entities are related
+    <a href="https://doi.org/gsrsm2" class="citation-title">
+      STRling: a k-mer counting approach that detects short tandem repeat expansions at known and novel loci
     </a>
 
-    <div class="citation-authors" data-tooltip="Daniel S Himmelstein, Michael Zietz, Vincent Rubinetti, Kyle Kloster, Benjamin J Heil, Faisal Alquaddoomi, Dongbo Hu, David N Nicholson, Yun Hao, Blair D Sullivan, Michael W Nagle, Casey S Greene " tabindex="0">
-      Daniel S Himmelstein, Michael Zietz, Vincent Rubinetti, Kyle Kloster, Benjamin J Heil, ..., David N Nicholson, Yun Hao, Blair D Sullivan, Michael W Nagle, Casey S Greene
+    <div class="citation-authors" data-tooltip="Harriet Dashnow, Brent S. Pedersen, Laurel Hiatt, Joe Brown, Sarah J. Beecroft, Gianina Ravenscroft, Amy J. LaCroix, Phillipa Lamont, Richard H. Roxburgh, Miriam J. Rodrigues, Mark Davis, Heather C. Mefford, Nigel G. Laing, Aaron R. Quinlan " tabindex="0">
+      Harriet Dashnow, Brent S. Pedersen, Laurel Hiatt, Joe Brown, Sarah J. Beecroft, ..., Miriam J. Rodrigues, Mark Davis, Heather C. Mefford, Nigel G. Laing, Aaron R. Quinlan
     </div>
 
     <div class="citation-details">
-      GigaScience
+      Genome Biology
         ·  
-      28 Dec 2022
+      14 Dec 2022
         ·  
-      doi:10.1093/gigascience/giad047
+      doi:10.1186/s13059-022-02826-4
     </div>
 
     
   </div>
 </div>
 
-<h3 id="2020">2020</h3>
+<h3 id="2021">2021</h3>
 
 <div class="citation">
   
 
   <div class="citation-text">
     
-    <i class="icon fa-solid fa-scroll"></i>
+    
 
-    <a href="https://doi.org/c7np" class="citation-title">
-      Open collaborative writing with Manubot
+    <a href="https://doi.org/gsrsm3" class="citation-title">
+      Effective variant filtering and expected candidate variant yield in studies of rare human disease
+    </a>
+
+    <div class="citation-authors" data-tooltip="Brent S. Pedersen, Joe M. Brown, Harriet Dashnow, Amelia D. Wallace, Matt Velinder, Martin Tristani-Firouzi, Joshua D. Schiffman, Tatiana Tvrdik, Rong Mao, D. Hunter Best, Pinar Bayrak-Toydemir, Aaron R. Quinlan " tabindex="0">
+      Brent S. Pedersen, Joe M. Brown, Harriet Dashnow, Amelia D. Wallace, Matt Velinder, ..., Tatiana Tvrdik, Rong Mao, D. Hunter Best, Pinar Bayrak-Toydemir, Aaron R. Quinlan
+    </div>
+
+    <div class="citation-details">
+      npj Genomic Medicine
+        ·  
+      15 Jul 2021
+        ·  
+      doi:10.1038/s41525-021-00227-3
+    </div>
+
+    
+  </div>
+</div>
+
+<h3 id="2019">2019</h3>
+
+<div class="citation">
+  
+
+  <div class="citation-text">
+    
+    
+
+    <a href="https://doi.org/ggh6r4" class="citation-title">
+      Bionitio: demonstrating and facilitating best practices for bioinformatics command-line software
     </a>
 
     <div class="citation-authors" tabindex="0">
-      Daniel S. Himmelstein, Vincent Rubinetti, David R. Slochower, Dongbo Hu, Venkat S. Malladi, Casey S. Greene, Anthony Gitter
+      Peter Georgeson, Anna Syme, Clare Sloggett, Jessica Chung, Harriet Dashnow, Michael Milton, Andrew Lonsdale, David Powell, Torsten Seemann, Bernard Pope
     </div>
 
     <div class="citation-details">
-      PLOS Computational Biology
+      GigaScience
         ·  
-      04 Dec 2020
+      01 Sep 2019
         ·  
-      doi:10.1371/journal.pcbi.1007128
+      doi:10.1093/gigascience/giz109
     </div>
 
     
@@ -1167,26 +1196,57 @@ <h3 id="2020">2020</h3>
     
     
 
-    <a href="https://doi.org/gg2mjh" class="citation-title">
-      Compressing gene expression data using multiple latent space dimensionalities learns complementary biological representations
+    <a href="https://doi.org/gkvmjw" class="citation-title">
+      Pooled-parent exome sequencing to prioritise <i>de novo</i> variants in genetic disease
     </a>
 
     <div class="citation-authors" tabindex="0">
-      Gregory P. Way, Michael Zietz, Vincent Rubinetti, Daniel S. Himmelstein, Casey S. Greene
+      Harriet Dashnow, Katrina M. Bell, Zornitza Stark, Tiong Y. Tan, Susan M. White, Alicia Oshlack
+    </div>
+
+    <div class="citation-details">
+      Cold Spring Harbor Laboratory
+        ·  
+      07 Apr 2019
+        ·  
+      doi:10.1101/601740
+    </div>
+
+    
+  </div>
+</div>
+
+<h3 id="2018">2018</h3>
+
+<div class="citation">
+  
+
+  <div class="citation-text">
+    
+    
+
+    <a href="https://doi.org/gd49p5" class="citation-title">
+      STRetch: detecting and discovering pathogenic short tandem repeat expansions
+    </a>
+
+    <div class="citation-authors" data-tooltip="Harriet Dashnow, Monkol Lek, Belinda Phipson, Andreas Halman, Simon Sadedin, Andrew Lonsdale, Mark Davis, Phillipa Lamont, Joshua S. Clayton, Nigel G. Laing, Daniel G. MacArthur, Alicia Oshlack " tabindex="0">
+      Harriet Dashnow, Monkol Lek, Belinda Phipson, Andreas Halman, Simon Sadedin, ..., Phillipa Lamont, Joshua S. Clayton, Nigel G. Laing, Daniel G. MacArthur, Alicia Oshlack
     </div>
 
     <div class="citation-details">
       Genome Biology
         ·  
-      11 May 2020
+      21 Aug 2018
         ·  
-      doi:10.1186/s13059-020-02021-3
+      doi:10.1186/s13059-018-1505-2
     </div>
 
     
   </div>
 </div>
 
+<h3 id="2017">2017</h3>
+
 <div class="citation">
   
 
@@ -1194,27 +1254,56 @@ <h3 id="2020">2020</h3>
     
     
 
-    <a href="https://doi.org/gg7m48" class="citation-title">
-      Constructing knowledge graphs and their biomedical applications
+    <a href="https://doi.org/gbr77c" class="citation-title">
+      A clinically driven variant prioritization framework outperforms purely computational approaches for the diagnostic analysis of singleton WES data
+    </a>
+
+    <div class="citation-authors" data-tooltip="Zornitza Stark, Harriet Dashnow, Sebastian Lunke, Tiong Y Tan, Alison Yeung, Simon Sadedin, Natalie Thorne, Ivan Macciocca, Clara Gaff, Alicia Oshlack, Susan M White, Paul A James " tabindex="0">
+      Zornitza Stark, Harriet Dashnow, Sebastian Lunke, Tiong Y Tan, Alison Yeung, ..., Ivan Macciocca, Clara Gaff, Alicia Oshlack, Susan M White, Paul A James
+    </div>
+
+    <div class="citation-details">
+      European Journal of Human Genetics
+        ·  
+      23 Aug 2017
+        ·  
+      doi:10.1038/ejhg.2017.123
+    </div>
+
+    
+  </div>
+</div>
+
+<h3 id="2016">2016</h3>
+
+<div class="citation">
+  
+
+  <div class="citation-text">
+    
+    
+
+    <a href="https://doi.org/ghcwtj" class="citation-title">
+      Ten Simple Rules for a Bioinformatics Journal Club
     </a>
 
     <div class="citation-authors" tabindex="0">
-      David N. Nicholson, Casey S. Greene
+      Andrew Lonsdale, Jocelyn Sietsma Penington, Timothy Rice, Michael Walker, Harriet Dashnow
     </div>
 
     <div class="citation-details">
-      Computational and Structural Biotechnology Journal
+      PLOS Computational Biology
         ·  
-      01 Jan 2020
+      28 Jan 2016
         ·  
-      doi:10.1016/j.csbj.2020.05.017
+      doi:10.1371/journal.pcbi.1004526
     </div>
 
     
   </div>
 </div>
 
-<h3 id="2019">2019</h3>
+<h3 id="2015">2015</h3>
 
 <div class="citation">
   
@@ -1223,27 +1312,81 @@ <h3 id="2019">2019</h3>
     
     
 
-    <a href="https://doi.org/gfxjxf" class="citation-title">
-      Sequential compression of gene expression across dimensionalities and methods reveals no single best method or dimensionality
+    <a href="https://doi.org/gsrsm4" class="citation-title">
+      Cpipe: a shared variant detection pipeline designed for diagnostic settings
+    </a>
+
+    <div class="citation-authors" data-tooltip="Simon P. Sadedin, Harriet Dashnow, Paul A. James, Melanie Bahlo, Denis C. Bauer, Andrew Lonie, Sebastian Lunke, Ivan Macciocca, Jason P. Ross, Kirby R. Siemering, Zornitza Stark, Susan M. White, Graham Taylor, Clara Gaff, Alicia Oshlack, Natalie P. Thorne " tabindex="0">
+      Simon P. Sadedin, Harriet Dashnow, Paul A. James, Melanie Bahlo, Denis C. Bauer, ..., Susan M. White, Graham Taylor, Clara Gaff, Alicia Oshlack, Natalie P. Thorne
+    </div>
+
+    <div class="citation-details">
+      Genome Medicine
+        ·  
+      10 Jul 2015
+        ·  
+      doi:10.1186/s13073-015-0191-x
+    </div>
+
+    
+  </div>
+</div>
+
+<h3 id="2014">2014</h3>
+
+<div class="citation">
+  
+
+  <div class="citation-text">
+    
+    
+
+    <a href="https://doi.org/gsrsm5" class="citation-title">
+      Data Interlocking: Coupling Analytics to the Data
     </a>
 
     <div class="citation-authors" tabindex="0">
-      Gregory P. Way, Michael Zietz, Vincent Rubinetti, Daniel S. Himmelstein, Casey S. Greene
+      Yousef Kowsar, Harriet Dashnow, Andrew Lonie
     </div>
 
     <div class="citation-details">
-      Cold Spring Harbor Laboratory
+      2014 IEEE/ACM 7th International Conference on Utility and Cloud Computing
         ·  
-      11 Mar 2019
+      01 Dec 2014
         ·  
-      doi:10.1101/573782
+      doi:10.1109/ucc.2014.113
     </div>
 
     
   </div>
 </div>
 
-<h3 id="2018">2018</h3>
+<div class="citation">
+  
+
+  <div class="citation-text">
+    
+    
+
+    <a href="https://doi.org/gf9sd9" class="citation-title">
+      SRST2: Rapid genomic surveillance for public health and hospital microbiology labs
+    </a>
+
+    <div class="citation-authors" tabindex="0">
+      Michael Inouye, Harriet Dashnow, Lesley-Ann Raven, Mark B Schultz, Bernard J Pope, Takehiro Tomita, Justin Zobel, Kathryn E Holt
+    </div>
+
+    <div class="citation-details">
+      Genome Medicine
+        ·  
+      20 Nov 2014
+        ·  
+      doi:10.1186/s13073-014-0090-6
+    </div>
+
+    
+  </div>
+</div>
 
 <div class="citation">
   
@@ -1252,20 +1395,49 @@ <h3 id="2018">2018</h3>
     
     
 
-    <a href="https://doi.org/ckcj" class="citation-title">
-      Sci-Hub provides access to nearly all scholarly literature
+    <a href="https://doi.org/gfrj9s" class="citation-title">
+      Ten Simple Rules for Writing a PLOS Ten Simple Rules Article
     </a>
 
     <div class="citation-authors" tabindex="0">
-      Daniel S Himmelstein, Ariel Rodriguez Romero, Jacob G Levernier, Thomas Anthony Munro, Stephen Reid McLaughlin, Bastian Greshake Tzovaras, Casey S Greene
+      Harriet Dashnow, Andrew Lonsdale, Philip E. Bourne
     </div>
 
     <div class="citation-details">
-      eLife
+      PLoS Computational Biology
         ·  
-      01 Mar 2018
+      23 Oct 2014
         ·  
-      doi:10.7554/eLife.32822
+      doi:10.1371/journal.pcbi.1003858
+    </div>
+
+    
+  </div>
+</div>
+
+<h3 id="2012">2012</h3>
+
+<div class="citation">
+  
+
+  <div class="citation-text">
+    
+    
+
+    <a href="https://doi.org/gsrsm6" class="citation-title">
+      Development of Transgenic Mice Containing an Introduced Stop Codon on the Human Methylmalonyl-CoA Mutase Locus
+    </a>
+
+    <div class="citation-authors" tabindex="0">
+      Nicole E. Buck, Harriet Dashnow, James J. Pitt, Leonie R. Wood, Heidi L. Peters
+    </div>
+
+    <div class="citation-details">
+      PLoS ONE
+        ·  
+      14 Sep 2012
+        ·  
+      doi:10.1371/journal.pone.0044974
     </div>
 
     
@@ -1843,20 +2015,20 @@ <h2 id="citation">Citation</h2>
     
     
 
-    <a href="https://doi.org/gg7m48" class="citation-title">
-      Constructing knowledge graphs and their biomedical applications
+    <a class="citation-title">
+      [no title info]
     </a>
 
     <div class="citation-authors" tabindex="0">
-      David N. Nicholson, Casey S. Greene
+      [no author info]
     </div>
 
     <div class="citation-details">
-      Computational and Structural Biotechnology Journal
+      [no publisher info]
         ·  
-      01 Jan 2020
+      [no date info]
         ·  
-      doi:10.1016/j.csbj.2020.05.017
+      [no id info]
     </div>
 
     
@@ -1865,108 +2037,37 @@ <h2 id="citation">Citation</h2>
 
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-      <img src="https://journals.plos.org/ploscompbiol/article/figure/image?size=inline&id=info:doi/10.1371/journal.pcbi.1007128.g001&amp;rev=2" alt="Open collaborative writing with Manubot" loading="lazy" onerror="this.src = '/images/fallback.svg'; this.onerror = null;">
+    <a class="citation-image" aria-label="citation link">
+      <img src="" alt="citation image" loading="lazy" onerror="this.src = '/images/fallback.svg'; this.onerror = null;">
     </a>
   
 
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-    <i class="icon fa-solid fa-scroll"></i>
+    
 
-    <a href="https://doi.org/c7np" class="citation-title">
-      Open collaborative writing with Manubot
+    <a class="citation-title">
+      [no title info]
     </a>
 
     <div class="citation-authors" tabindex="0">
-      Daniel S. Himmelstein, Vincent Rubinetti, David R. Slochower, Dongbo Hu, Venkat S. Malladi, Casey S. Greene, Anthony Gitter
+      [no author info]
     </div>
 
     <div class="citation-details">
-      PLOS Computational Biology
+      [no publisher info]
         ·  
-      04 Dec 2020
+      [no date info]
         ·  
-      doi:10.1371/journal.pcbi.1007128
+      [no id info]
     </div>
 
     
       
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-
 
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-
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 </div>
@@ -2562,7 +2663,7 @@ <h3 id="grid-of-citations">Grid of citations</h3>
 
 <div class="grid" data-style="">
   
-<h3 id="2023">2023</h3>
+<h3 id="2024">2024</h3>
 
 <div class="citation">
   
@@ -2571,20 +2672,20 @@ <h3 id="2023">2023</h3>
     
     
 
-    <a href="https://doi.org/gr5hb5" class="citation-title">
-      MyGeneset.info: an interactive and programmatic platform for community-curated and user-created collections of genes
+    <a href="https://github.com/elegant-scipy/elegant-scipy" class="citation-title">
+      Elegant SciPy
     </a>
 
     <div class="citation-authors" tabindex="0">
-      Ricardo Avila, Vincent Rubinetti, Xinghua Zhou, Dongbo Hu, Zhongchao Qian, Marco Alvarado Cano, Everaldo Rodolpho, Ginger Tsueng, Casey Greene, Chunlei Wu
+      Juan Nunez-Iglesias, Stéfan Van der Walt, Harriet Dashnow
     </div>
 
     <div class="citation-details">
-      Nucleic Acids Research
+      O'Reilly Media, Inc.
         ·  
-      18 Apr 2023
+      02 Jan 2024
         ·  
-      doi:10.1093/nar/gkad289
+      isbn:9781491922941
     </div>
 
     
@@ -2598,20 +2699,20 @@ <h3 id="2023">2023</h3>
     
     
 
-    <a href="https://doi.org/grmcb9" class="citation-title">
-      Hetnet connectivity search provides rapid insights into how two biomedical entities are related
+    <a href="https://doi.org/gtbst8" class="citation-title">
+      Characterization and visualization of tandem repeats at genome scale
     </a>
 
-    <div class="citation-authors" data-tooltip="Daniel S. Himmelstein, Michael Zietz, Vincent Rubinetti, Kyle Kloster, Benjamin J. Heil, Faisal Alquaddoomi, Dongbo Hu, David N. Nicholson, Yun Hao, Blair D. Sullivan, Michael W. Nagle, Casey S. Greene " tabindex="0">
-      Daniel S. Himmelstein, Michael Zietz, Vincent Rubinetti, Kyle Kloster, Benjamin J. Heil, ..., David N. Nicholson, Yun Hao, Blair D. Sullivan, Michael W. Nagle, Casey S. Greene
+    <div class="citation-authors" data-tooltip="Egor Dolzhenko, Adam English, Harriet Dashnow, Guilherme De Sena Brandine, Tom Mokveld, William J. Rowell, Caitlin Karniski, Zev Kronenberg, Matt C. Danzi, Warren A. Cheung, Chengpeng Bi, Emily Farrow, Aaron Wenger, Khi Pin Chua, Verónica Martínez-Cerdeño, Trevor D. Bartley, Peng Jin, David L. Nelson, Stephan Zuchner, Tomi Pastinen, Aaron R. Quinlan, Fritz J. Sedlazeck, Michael A. Eberle " tabindex="0">
+      Egor Dolzhenko, Adam English, Harriet Dashnow, Guilherme De Sena Brandine, Tom Mokveld, ..., Stephan Zuchner, Tomi Pastinen, Aaron R. Quinlan, Fritz J. Sedlazeck, Michael A. Eberle
     </div>
 
     <div class="citation-details">
-      Cold Spring Harbor Laboratory
+      Nature Biotechnology
         ·  
-      07 Jan 2023
+      02 Jan 2024
         ·  
-      doi:10.1101/2023.01.05.522941
+      doi:10.1038/s41587-023-02057-3
     </div>
 
     
@@ -2627,49 +2728,78 @@ <h3 id="2022">2022</h3>
     
     
 
-    <a href="https://doi.org/gsd85n" class="citation-title">
-      Hetnet connectivity search provides rapid insights into how biomedical entities are related
+    <a href="https://doi.org/gsrsm2" class="citation-title">
+      STRling: a k-mer counting approach that detects short tandem repeat expansions at known and novel loci
     </a>
 
-    <div class="citation-authors" data-tooltip="Daniel S Himmelstein, Michael Zietz, Vincent Rubinetti, Kyle Kloster, Benjamin J Heil, Faisal Alquaddoomi, Dongbo Hu, David N Nicholson, Yun Hao, Blair D Sullivan, Michael W Nagle, Casey S Greene " tabindex="0">
-      Daniel S Himmelstein, Michael Zietz, Vincent Rubinetti, Kyle Kloster, Benjamin J Heil, ..., David N Nicholson, Yun Hao, Blair D Sullivan, Michael W Nagle, Casey S Greene
+    <div class="citation-authors" data-tooltip="Harriet Dashnow, Brent S. Pedersen, Laurel Hiatt, Joe Brown, Sarah J. Beecroft, Gianina Ravenscroft, Amy J. LaCroix, Phillipa Lamont, Richard H. Roxburgh, Miriam J. Rodrigues, Mark Davis, Heather C. Mefford, Nigel G. Laing, Aaron R. Quinlan " tabindex="0">
+      Harriet Dashnow, Brent S. Pedersen, Laurel Hiatt, Joe Brown, Sarah J. Beecroft, ..., Miriam J. Rodrigues, Mark Davis, Heather C. Mefford, Nigel G. Laing, Aaron R. Quinlan
     </div>
 
     <div class="citation-details">
-      GigaScience
+      Genome Biology
+        ·  
+      14 Dec 2022
+        ·  
+      doi:10.1186/s13059-022-02826-4
+    </div>
+
+    
+  </div>
+</div>
+
+<h3 id="2021">2021</h3>
+
+<div class="citation">
+  
+
+  <div class="citation-text">
+    
+    
+
+    <a href="https://doi.org/gsrsm3" class="citation-title">
+      Effective variant filtering and expected candidate variant yield in studies of rare human disease
+    </a>
+
+    <div class="citation-authors" data-tooltip="Brent S. Pedersen, Joe M. Brown, Harriet Dashnow, Amelia D. Wallace, Matt Velinder, Martin Tristani-Firouzi, Joshua D. Schiffman, Tatiana Tvrdik, Rong Mao, D. Hunter Best, Pinar Bayrak-Toydemir, Aaron R. Quinlan " tabindex="0">
+      Brent S. Pedersen, Joe M. Brown, Harriet Dashnow, Amelia D. Wallace, Matt Velinder, ..., Tatiana Tvrdik, Rong Mao, D. Hunter Best, Pinar Bayrak-Toydemir, Aaron R. Quinlan
+    </div>
+
+    <div class="citation-details">
+      npj Genomic Medicine
         ·  
-      28 Dec 2022
+      15 Jul 2021
         ·  
-      doi:10.1093/gigascience/giad047
+      doi:10.1038/s41525-021-00227-3
     </div>
 
     
   </div>
 </div>
 
-<h3 id="2020">2020</h3>
+<h3 id="2019">2019</h3>
 
 <div class="citation">
   
 
   <div class="citation-text">
     
-    <i class="icon fa-solid fa-scroll"></i>
+    
 
-    <a href="https://doi.org/c7np" class="citation-title">
-      Open collaborative writing with Manubot
+    <a href="https://doi.org/ggh6r4" class="citation-title">
+      Bionitio: demonstrating and facilitating best practices for bioinformatics command-line software
     </a>
 
     <div class="citation-authors" tabindex="0">
-      Daniel S. Himmelstein, Vincent Rubinetti, David R. Slochower, Dongbo Hu, Venkat S. Malladi, Casey S. Greene, Anthony Gitter
+      Peter Georgeson, Anna Syme, Clare Sloggett, Jessica Chung, Harriet Dashnow, Michael Milton, Andrew Lonsdale, David Powell, Torsten Seemann, Bernard Pope
     </div>
 
     <div class="citation-details">
-      PLOS Computational Biology
+      GigaScience
         ·  
-      04 Dec 2020
+      01 Sep 2019
         ·  
-      doi:10.1371/journal.pcbi.1007128
+      doi:10.1093/gigascience/giz109
     </div>
 
     
@@ -2683,26 +2813,57 @@ <h3 id="2020">2020</h3>
     
     
 
-    <a href="https://doi.org/gg2mjh" class="citation-title">
-      Compressing gene expression data using multiple latent space dimensionalities learns complementary biological representations
+    <a href="https://doi.org/gkvmjw" class="citation-title">
+      Pooled-parent exome sequencing to prioritise <i>de novo</i> variants in genetic disease
     </a>
 
     <div class="citation-authors" tabindex="0">
-      Gregory P. Way, Michael Zietz, Vincent Rubinetti, Daniel S. Himmelstein, Casey S. Greene
+      Harriet Dashnow, Katrina M. Bell, Zornitza Stark, Tiong Y. Tan, Susan M. White, Alicia Oshlack
+    </div>
+
+    <div class="citation-details">
+      Cold Spring Harbor Laboratory
+        ·  
+      07 Apr 2019
+        ·  
+      doi:10.1101/601740
+    </div>
+
+    
+  </div>
+</div>
+
+<h3 id="2018">2018</h3>
+
+<div class="citation">
+  
+
+  <div class="citation-text">
+    
+    
+
+    <a href="https://doi.org/gd49p5" class="citation-title">
+      STRetch: detecting and discovering pathogenic short tandem repeat expansions
+    </a>
+
+    <div class="citation-authors" data-tooltip="Harriet Dashnow, Monkol Lek, Belinda Phipson, Andreas Halman, Simon Sadedin, Andrew Lonsdale, Mark Davis, Phillipa Lamont, Joshua S. Clayton, Nigel G. Laing, Daniel G. MacArthur, Alicia Oshlack " tabindex="0">
+      Harriet Dashnow, Monkol Lek, Belinda Phipson, Andreas Halman, Simon Sadedin, ..., Phillipa Lamont, Joshua S. Clayton, Nigel G. Laing, Daniel G. MacArthur, Alicia Oshlack
     </div>
 
     <div class="citation-details">
       Genome Biology
         ·  
-      11 May 2020
+      21 Aug 2018
         ·  
-      doi:10.1186/s13059-020-02021-3
+      doi:10.1186/s13059-018-1505-2
     </div>
 
     
   </div>
 </div>
 
+<h3 id="2017">2017</h3>
+
 <div class="citation">
   
 
@@ -2710,27 +2871,56 @@ <h3 id="2020">2020</h3>
     
     
 
-    <a href="https://doi.org/gg7m48" class="citation-title">
-      Constructing knowledge graphs and their biomedical applications
+    <a href="https://doi.org/gbr77c" class="citation-title">
+      A clinically driven variant prioritization framework outperforms purely computational approaches for the diagnostic analysis of singleton WES data
+    </a>
+
+    <div class="citation-authors" data-tooltip="Zornitza Stark, Harriet Dashnow, Sebastian Lunke, Tiong Y Tan, Alison Yeung, Simon Sadedin, Natalie Thorne, Ivan Macciocca, Clara Gaff, Alicia Oshlack, Susan M White, Paul A James " tabindex="0">
+      Zornitza Stark, Harriet Dashnow, Sebastian Lunke, Tiong Y Tan, Alison Yeung, ..., Ivan Macciocca, Clara Gaff, Alicia Oshlack, Susan M White, Paul A James
+    </div>
+
+    <div class="citation-details">
+      European Journal of Human Genetics
+        ·  
+      23 Aug 2017
+        ·  
+      doi:10.1038/ejhg.2017.123
+    </div>
+
+    
+  </div>
+</div>
+
+<h3 id="2016">2016</h3>
+
+<div class="citation">
+  
+
+  <div class="citation-text">
+    
+    
+
+    <a href="https://doi.org/ghcwtj" class="citation-title">
+      Ten Simple Rules for a Bioinformatics Journal Club
     </a>
 
     <div class="citation-authors" tabindex="0">
-      David N. Nicholson, Casey S. Greene
+      Andrew Lonsdale, Jocelyn Sietsma Penington, Timothy Rice, Michael Walker, Harriet Dashnow
     </div>
 
     <div class="citation-details">
-      Computational and Structural Biotechnology Journal
+      PLOS Computational Biology
         ·  
-      01 Jan 2020
+      28 Jan 2016
         ·  
-      doi:10.1016/j.csbj.2020.05.017
+      doi:10.1371/journal.pcbi.1004526
     </div>
 
     
   </div>
 </div>
 
-<h3 id="2019">2019</h3>
+<h3 id="2015">2015</h3>
 
 <div class="citation">
   
@@ -2739,27 +2929,110 @@ <h3 id="2019">2019</h3>
     
     
 
-    <a href="https://doi.org/gfxjxf" class="citation-title">
-      Sequential compression of gene expression across dimensionalities and methods reveals no single best method or dimensionality
+    <a href="https://doi.org/gsrsm4" class="citation-title">
+      Cpipe: a shared variant detection pipeline designed for diagnostic settings
+    </a>
+
+    <div class="citation-authors" data-tooltip="Simon P. Sadedin, Harriet Dashnow, Paul A. James, Melanie Bahlo, Denis C. Bauer, Andrew Lonie, Sebastian Lunke, Ivan Macciocca, Jason P. Ross, Kirby R. Siemering, Zornitza Stark, Susan M. White, Graham Taylor, Clara Gaff, Alicia Oshlack, Natalie P. Thorne " tabindex="0">
+      Simon P. Sadedin, Harriet Dashnow, Paul A. James, Melanie Bahlo, Denis C. Bauer, ..., Susan M. White, Graham Taylor, Clara Gaff, Alicia Oshlack, Natalie P. Thorne
+    </div>
+
+    <div class="citation-details">
+      Genome Medicine
+        ·  
+      10 Jul 2015
+        ·  
+      doi:10.1186/s13073-015-0191-x
+    </div>
+
+    
+  </div>
+</div>
+
+<h3 id="2014">2014</h3>
+
+<div class="citation">
+  
+
+  <div class="citation-text">
+    
+    
+
+    <a href="https://doi.org/gsrsm5" class="citation-title">
+      Data Interlocking: Coupling Analytics to the Data
     </a>
 
     <div class="citation-authors" tabindex="0">
-      Gregory P. Way, Michael Zietz, Vincent Rubinetti, Daniel S. Himmelstein, Casey S. Greene
+      Yousef Kowsar, Harriet Dashnow, Andrew Lonie
     </div>
 
     <div class="citation-details">
-      Cold Spring Harbor Laboratory
+      2014 IEEE/ACM 7th International Conference on Utility and Cloud Computing
         ·  
-      11 Mar 2019
+      01 Dec 2014
         ·  
-      doi:10.1101/573782
+      doi:10.1109/ucc.2014.113
     </div>
 
     
   </div>
 </div>
 
-<h3 id="2018">2018</h3>
+<div class="citation">
+  
+
+  <div class="citation-text">
+    
+    
+
+    <a href="https://doi.org/gf9sd9" class="citation-title">
+      SRST2: Rapid genomic surveillance for public health and hospital microbiology labs
+    </a>
+
+    <div class="citation-authors" tabindex="0">
+      Michael Inouye, Harriet Dashnow, Lesley-Ann Raven, Mark B Schultz, Bernard J Pope, Takehiro Tomita, Justin Zobel, Kathryn E Holt
+    </div>
+
+    <div class="citation-details">
+      Genome Medicine
+        ·  
+      20 Nov 2014
+        ·  
+      doi:10.1186/s13073-014-0090-6
+    </div>
+
+    
+  </div>
+</div>
+
+<div class="citation">
+  
+
+  <div class="citation-text">
+    
+    
+
+    <a href="https://doi.org/gfrj9s" class="citation-title">
+      Ten Simple Rules for Writing a PLOS Ten Simple Rules Article
+    </a>
+
+    <div class="citation-authors" tabindex="0">
+      Harriet Dashnow, Andrew Lonsdale, Philip E. Bourne
+    </div>
+
+    <div class="citation-details">
+      PLoS Computational Biology
+        ·  
+      23 Oct 2014
+        ·  
+      doi:10.1371/journal.pcbi.1003858
+    </div>
+
+    
+  </div>
+</div>
+
+<h3 id="2012">2012</h3>
 
 <div class="citation">
   
@@ -2768,20 +3041,20 @@ <h3 id="2018">2018</h3>
     
     
 
-    <a href="https://doi.org/ckcj" class="citation-title">
-      Sci-Hub provides access to nearly all scholarly literature
+    <a href="https://doi.org/gsrsm6" class="citation-title">
+      Development of Transgenic Mice Containing an Introduced Stop Codon on the Human Methylmalonyl-CoA Mutase Locus
     </a>
 
     <div class="citation-authors" tabindex="0">
-      Daniel S Himmelstein, Ariel Rodriguez Romero, Jacob G Levernier, Thomas Anthony Munro, Stephen Reid McLaughlin, Bastian Greshake Tzovaras, Casey S Greene
+      Nicole E. Buck, Harriet Dashnow, James J. Pitt, Leonie R. Wood, Heidi L. Peters
     </div>
 
     <div class="citation-details">
-      eLife
+      PLoS ONE
         ·  
-      01 Mar 2018
+      14 Sep 2012
         ·  
-      doi:10.7554/eLife.32822
+      doi:10.1371/journal.pone.0044974
     </div>