LDMS: fixing lib include #133
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| name: End-to-end Testing (pytest) | |
| on: | |
| push: | |
| branches: | |
| - main | |
| pull_request: | |
| branches: | |
| - main | |
| jobs: | |
| end_to_end_pytest: | |
| strategy: | |
| matrix: | |
| platform: [ubuntu-latest] | |
| python-version: ["3.10"] | |
| runs-on: ${{ matrix.platform }} | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - name: Set up Python ${{ matrix.python-version }} | |
| uses: actions/setup-python@v3 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - name: Install dependencies | |
| run: | | |
| sudo apt-get update -y | |
| sudo apt-get install -y hdf5-tools libhdf5-openmpi-dev openmpi-bin | |
| python -m pip install --upgrade pip | |
| python -m pip install --upgrade pytest mpi4py "cython<3.0.0" numpy wheel pkgconfig "setuptools<62.0.0" | |
| # we need to build h5py with the system HDF5 lib backend | |
| export HDF5_MPI="ON" | |
| # Install h5py https://github.com/h5py/h5py/issues/2222 | |
| CC=mpicc python -m pip install --no-cache-dir --no-binary=h5py h5py --no-build-isolation | |
| - name: Install Darshan | |
| run: | | |
| git submodule update --init | |
| export C_INCLUDE_PATH=$C_INCLUDE_PATH:/usr/include/hdf5/openmpi/ | |
| export DARSHAN_INSTALL_PREFIX=$PWD/darshan_install | |
| export DARSHAN_RUNTIME_CONFIG_ARGS="--with-jobid-env=NONE --enable-hdf5-mod --with-log-path-by-env=DARSHAN_LOGPATH" | |
| darshan-test/automated/build-darshan.sh | |
| - name: Install Darshan (non-MPI) | |
| run: | | |
| export DARSHAN_INSTALL_PREFIX=$PWD/darshan_nonmpi_install | |
| export DARSHAN_RUNTIME_CONFIG_ARGS="--without-mpi --with-jobid-env=NONE --with-log-path-by-env=DARSHAN_LOGPATH" | |
| darshan-test/automated/build-darshan.sh | |
| - name: Install pydarshan | |
| run: | | |
| cd darshan-util/pydarshan | |
| python -m pip install . | |
| - name: Test with pytest | |
| run: | | |
| export LD_LIBRARY_PATH=$LD_LIBRARY_PATH:$PWD/darshan_install/lib | |
| export DARSHAN_INSTALL_PATH=$PWD/darshan_install | |
| export DARSHAN_NONMPI_INSTALL_PATH=$PWD/darshan_nonmpi_install | |
| export DARSHAN_ROOT_PATH=$PWD | |
| export HDF5_LIB=/usr/lib/x86_64-linux-gnu/hdf5/openmpi/libhdf5.so | |
| python -m pytest darshan-test/python_runtime_tests.py |