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+ + + + + + + + + + \ No newline at end of file diff --git a/agenda/agenda.md b/agenda/agenda.md new file mode 100644 index 0000000..945c733 --- /dev/null +++ b/agenda/agenda.md @@ -0,0 +1,91 @@ +# Workshop Agenda + +September 19-20, 2023 + +08:00 AM - 13:00 PM Pacific Daylight Time (PDT) + +#### Instructors(s): + +- [Michele Cosi](https://cosimichele.github.io/){target=_blank} [![](https://orcid.org/sites/default/files/images/orcid_16x16.png)](https://orcid.org/0000-0001-7609-1939){target=_blank} + +- [Jeffrey K. Gillan PhD](https://www.gillanscience.com/){target=_blank} [![](https://orcid.org/sites/default/files/images/orcid_16x16.png)](https://orcid.org/0000-0002-0731-3048){target=_blank} + +- [Carlos Lizárraga-Celaya PhD](https://carloslizarragac.github.io/){target=_blank} [![](https://orcid.org/sites/default/files/images/orcid_16x16.png)](https://orcid.org/0000-0002-0893-4268){target=_blank} + +- [Tyson Lee Swetnam PhD](https://tysonswetnam.com/){target=_blank} [![](https://orcid.org/sites/default/files/images/orcid_16x16.png)](http://orcid.org/0000-0002-6639-7181){target=_blank} + + +## Agenda Tuesday 9/19 + +| :fontawesome-solid-hourglass-half: | Lessons | Instructor | Link | +|------------------------------------|---------|------------|------| +| 09:00 | Introduction | Tyson | [Presentation: CyVerse](https://tinyurl.com/usfs-cyverse){target=_blank} | +| 09:30 | [Session 1: Account Creation & User Portal](https://learning.cyverse.org/account/){target=_blank} | Tyson |[Workshop sign-up](https://user.cyverse.org/workshops/130){target=_blank} | +| 10:00 | Break | | +| 10:05 | [Session 2: Discovery Environment (DE) UI](step3.md) | Tyson | [DE User Manual](https://learning.cyverse.org/de/){target=_blank} | +| 10:30 | [Session 3: Data Store I](step4.md) | Michele | +| 11:00 | Break | | | +| 11:05 | [Session 4: Data Store II](step5.md) | Michele | +| 12:00 | Break | | | +| 12:05 | [Session 5: DE Interactive Analyses](step8.md) | Tyson | | +| 12:45 | Wrap-up / Q&A | | + + +## Agenda Wednesday 9/20 + +| :fontawesome-solid-hourglass-half: | Lessons | Instructor | Link | +|------------------------------------|---------|------------|------| +| 08:00 | Review Day 1 Q&A | Tyson | | +| 08:15 | [Session 6: Data Store III (Metadata)](step6.md) | Tyson | +| 09:00 | Break | | +| 09:05 | [Session 7: Exploring VICE Apps ](step8.md) | Jeff +| 10:00 | Break | | +| 10:05 | [Session 8: Create Tools & Apps](https://learning.cyverse.org/de/create_apps/) | Tyson | +| 10:30 | [Session 9: Teams & Communities](https://learning.cyverse.org/ds/teams/) | Michele | | +| 11:00 | Break | | | +| 11:05 | [Session 10: Cloud-Native Services]() | Edwin | | +| 11:45 | Wrap-up / Q&A | + +## Code of Conduct + +This Code of Conduct applies to all Event participants, instructors, and activities during the workshop. + +Data Science Institute (DSI) is dedicated to providing professional computational research +and educational experiences for all of our users, regardless of domain +focus, academic status, educational level, gender/gender +identity/expression, age, sexual orientation, mental or physical +ability, physical appearance, body size, race, ethnicity, religion (or +lack thereof), technology choices, dietary preferences, or any other +personal characteristic. + +While participating at an Event, we expect you to: + +- Interact with others and use ChatGPT professionally and ethically by + complying with our Policies. +- Constructively criticize ideas and processes, not people. +- Follow the Golden Rule (treat others as you want to be treated) when + interacting online or in-person with collaborators, trainers, and + support staff. +- Comply with this Code in spirit as much as the letter, as it is + neither exhaustive nor complete in identifying any and all possible + unacceptable conduct. + +We do not tolerate harassment of other users or staff in any form +(including, but not limited to, violent threats or language, derogatory +language or jokes, doxing, insults, advocating for or encouraging any of +these behaviors). Sexual language and imagery are not appropriate at any +time (excludes Protected Health Information in compliance with HIPAA). +Any user violating this Code may be expelled from the platform and the +workshop at DSI's sole discretion without warning. + +To report a violation of this Code, directly speak to a trainer. If you are not comfortable +speaking to a trainer, or the trainer is who you are reporting, email with the following information: + +- Your contact information +- Names (real, username, pseudonyms) of any individuals involved, and + or witness(es) if any. +- Your account of what occurred and if the incident is ongoing. If + there is a publicly available record (a tweet, public chat log, + etc.), please include a link or attachment. +- Any additional information that may be helpful in resolving the + issue. diff --git a/agenda/index.html b/agenda/index.html new file mode 100644 index 0000000..0b23f9c --- /dev/null +++ b/agenda/index.html @@ -0,0 +1,1271 @@ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + Agenda - Cary Institute CyVerse Self-Guided Course + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +
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Workshop Agenda

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September 19-20, 2023

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08:00 AM - 13:00 PM Pacific Daylight Time (PDT)

+

Instructors(s):

+ +

Agenda Tuesday 9/19

+ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +
LessonsInstructorLink
09:00IntroductionTysonPresentation: CyVerse
09:30Session 1: Account Creation & User PortalTysonWorkshop sign-up
10:00Break
10:05Session 2: Discovery Environment (DE) UITysonDE User Manual
10:30Session 3: Data Store IMichele
11:00Break
11:05Session 4: Data Store IIMichele
12:00Break
12:05Session 5: DE Interactive AnalysesTyson
12:45Wrap-up / Q&A
+

Agenda Wednesday 9/20

+ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +
LessonsInstructorLink
08:00Review Day 1 Q&ATyson
08:15Session 6: Data Store III (Metadata)Tyson
09:00Break
09:05Session 7: Exploring VICE Apps Jeff
10:00Break
10:05Session 8: Create Tools & AppsTyson
10:30Session 9: Teams & CommunitiesMichele
11:00Break
11:05Session 10: Cloud-Native ServicesEdwin
11:45Wrap-up / Q&A
+

Code of Conduct

+

This Code of Conduct applies to all Event participants, instructors, and activities during the workshop.

+

Data Science Institute (DSI) is dedicated to providing professional computational research +and educational experiences for all of our users, regardless of domain +focus, academic status, educational level, gender/gender +identity/expression, age, sexual orientation, mental or physical +ability, physical appearance, body size, race, ethnicity, religion (or +lack thereof), technology choices, dietary preferences, or any other +personal characteristic.

+

While participating at an Event, we expect you to:

+
    +
  • Interact with others and use ChatGPT professionally and ethically by + complying with our Policies.
  • +
  • Constructively criticize ideas and processes, not people.
  • +
  • Follow the Golden Rule (treat others as you want to be treated) when + interacting online or in-person with collaborators, trainers, and + support staff.
  • +
  • Comply with this Code in spirit as much as the letter, as it is + neither exhaustive nor complete in identifying any and all possible + unacceptable conduct.
  • +
+

We do not tolerate harassment of other users or staff in any form +(including, but not limited to, violent threats or language, derogatory +language or jokes, doxing, insults, advocating for or encouraging any of +these behaviors). Sexual language and imagery are not appropriate at any +time (excludes Protected Health Information in compliance with HIPAA). +Any user violating this Code may be expelled from the platform and the +workshop at DSI's sole discretion without warning.

+

To report a violation of this Code, directly speak to a trainer. If you are not comfortable +speaking to a trainer, or the trainer is who you are reporting, email info@cyverse.org with the following information:

+
    +
  • Your contact information
  • +
  • Names (real, username, pseudonyms) of any individuals involved, and + or witness(es) if any.
  • +
  • Your account of what occurred and if the incident is ongoing. If + there is a publicly available record (a tweet, public chat log, + etc.), please include a link or attachment.
  • +
  • Any additional information that may be helpful in resolving the + issue.
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I(...e).pipe(oe(o=>d(o,"change").pipe(m(()=>o))),Q(e[r]),m(o=>({index:e.indexOf(o),color:{media:o.getAttribute("data-md-color-media"),scheme:o.getAttribute("data-md-color-scheme"),primary:o.getAttribute("data-md-color-primary"),accent:o.getAttribute("data-md-color-accent")}})),G(1))}function Kn(e){let t=$("input",e),r=x("meta",{name:"theme-color"});document.head.appendChild(r);let o=x("meta",{name:"color-scheme"});document.head.appendChild(o);let n=$t("(prefers-color-scheme: light)");return C(()=>{let i=new g;return i.subscribe(a=>{if(document.body.setAttribute("data-md-color-switching",""),a.color.media==="(prefers-color-scheme)"){let s=matchMedia("(prefers-color-scheme: light)"),p=document.querySelector(s.matches?"[data-md-color-media='(prefers-color-scheme: light)']":"[data-md-color-media='(prefers-color-scheme: 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Gr=Vt(Yr());function Ga(e){e.setAttribute("data-md-copying","");let t=e.closest("[data-copy]"),r=t?t.getAttribute("data-copy"):e.innerText;return e.removeAttribute("data-md-copying"),r.trimEnd()}function Bn({alert$:e}){Gr.default.isSupported()&&new F(t=>{new Gr.default("[data-clipboard-target], [data-clipboard-text]",{text:r=>r.getAttribute("data-clipboard-text")||Ga(P(r.getAttribute("data-clipboard-target")))}).on("success",r=>t.next(r))}).pipe(E(t=>{t.trigger.focus()}),m(()=>Ee("clipboard.copied"))).subscribe(e)}function Gn(e,t){return e.protocol=t.protocol,e.hostname=t.hostname,e}function Ja(e,t){let r=new Map;for(let o of $("url",e)){let n=P("loc",o),i=[Gn(new URL(n.textContent),t)];r.set(`${i[0]}`,i);for(let a of $("[rel=alternate]",o)){let s=a.getAttribute("href");s!=null&&i.push(Gn(new URL(s),t))}}return r}function ur(e){return mn(new URL("sitemap.xml",e)).pipe(m(t=>Ja(t,new URL(e))),ve(()=>I(new Map)))}function Xa(e,t){if(!(e.target instanceof Element))return O;let 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g,o=r.pipe(X(),ne(!0));z([t.pipe(Ae(It)),r],(i,a)=>a).pipe(Z("value")).subscribe(({value:i})=>t.next({type:2,data:i})),r.pipe(Z("focus")).subscribe(({focus:i})=>{i&&Je("search",i)}),d(e.form,"reset").pipe(U(o)).subscribe(()=>e.focus());let n=P("header [for=__search]");return d(n,"click").subscribe(()=>e.focus()),ns(e,{worker$:t}).pipe(E(i=>r.next(i)),L(()=>r.complete()),m(i=>R({ref:e},i)),G(1))}function si(e,{worker$:t,query$:r}){let o=new g,n=tn(e.parentElement).pipe(b(Boolean)),i=e.parentElement,a=P(":scope > :first-child",e),s=P(":scope > :last-child",e);Ve("search").subscribe(l=>s.setAttribute("role",l?"list":"presentation")),o.pipe(ee(r),Ur(t.pipe(Ae(It)))).subscribe(([{items:l},{value:f}])=>{switch(l.length){case 0:a.textContent=f.length?Ee("search.result.none"):Ee("search.result.placeholder");break;case 1:a.textContent=Ee("search.result.one");break;default:let u=sr(l.length);a.textContent=Ee("search.result.other",u)}});let p=o.pipe(E(()=>s.innerHTML=""),v(({items:l})=>S(I(...l.slice(0,10)),I(...l.slice(10)).pipe(Ye(4),Vr(n),v(([f])=>f)))),m(Tn),pe());return p.subscribe(l=>s.appendChild(l)),p.pipe(oe(l=>{let f=fe("details",l);return typeof f=="undefined"?O:d(f,"toggle").pipe(U(o),m(()=>f))})).subscribe(l=>{l.open===!1&&l.offsetTop<=i.scrollTop&&i.scrollTo({top:l.offsetTop})}),t.pipe(b(dr),m(({data:l})=>l)).pipe(E(l=>o.next(l)),L(()=>o.complete()),m(l=>R({ref:e},l)))}function is(e,{query$:t}){return t.pipe(m(({value:r})=>{let o=xe();return o.hash="",r=r.replace(/\s+/g,"+").replace(/&/g,"%26").replace(/=/g,"%3D"),o.search=`q=${r}`,{url:o}}))}function ci(e,t){let r=new g,o=r.pipe(X(),ne(!0));return r.subscribe(({url:n})=>{e.setAttribute("data-clipboard-text",e.href),e.href=`${n}`}),d(e,"click").pipe(U(o)).subscribe(n=>n.preventDefault()),is(e,t).pipe(E(n=>r.next(n)),L(()=>r.complete()),m(n=>R({ref:e},n)))}function pi(e,{worker$:t,keyboard$:r}){let o=new g,n=Se("search-query"),i=S(d(n,"keydown"),d(n,"focus")).pipe(be(se),m(()=>n.value),K());return o.pipe(We(i),m(([{suggest:s},p])=>{let c=p.split(/([\s-]+)/);if(s!=null&&s.length&&c[c.length-1]){let l=s[s.length-1];l.startsWith(c[c.length-1])&&(c[c.length-1]=l)}else c.length=0;return c})).subscribe(s=>e.innerHTML=s.join("").replace(/\s/g," ")),r.pipe(b(({mode:s})=>s==="search")).subscribe(s=>{switch(s.type){case"ArrowRight":e.innerText.length&&n.selectionStart===n.value.length&&(n.value=e.innerText);break}}),t.pipe(b(dr),m(({data:s})=>s)).pipe(E(s=>o.next(s)),L(()=>o.complete()),m(()=>({ref:e})))}function li(e,{index$:t,keyboard$:r}){let o=ye();try{let n=ni(o.search,t),i=Se("search-query",e),a=Se("search-result",e);d(e,"click").pipe(b(({target:p})=>p instanceof Element&&!!p.closest("a"))).subscribe(()=>Je("search",!1)),r.pipe(b(({mode:p})=>p==="search")).subscribe(p=>{let c=Re();switch(p.type){case"Enter":if(c===i){let l=new Map;for(let f of $(":first-child [href]",a)){let u=f.firstElementChild;l.set(f,parseFloat(u.getAttribute("data-md-score")))}if(l.size){let[[f]]=[...l].sort(([,u],[,h])=>h-u);f.click()}p.claim()}break;case"Escape":case"Tab":Je("search",!1),i.blur();break;case"ArrowUp":case"ArrowDown":if(typeof c=="undefined")i.focus();else{let l=[i,...$(":not(details) > [href], summary, details[open] [href]",a)],f=Math.max(0,(Math.max(0,l.indexOf(c))+l.length+(p.type==="ArrowUp"?-1:1))%l.length);l[f].focus()}p.claim();break;default:i!==Re()&&i.focus()}}),r.pipe(b(({mode:p})=>p==="global")).subscribe(p=>{switch(p.type){case"f":case"s":case"/":i.focus(),i.select(),p.claim();break}});let s=ai(i,{worker$:n});return S(s,si(a,{worker$:n,query$:s})).pipe(Pe(...ae("search-share",e).map(p=>ci(p,{query$:s})),...ae("search-suggest",e).map(p=>pi(p,{worker$:n,keyboard$:r}))))}catch(n){return e.hidden=!0,Ke}}function mi(e,{index$:t,location$:r}){return z([t,r.pipe(Q(xe()),b(o=>!!o.searchParams.get("h")))]).pipe(m(([o,n])=>oi(o.config)(n.searchParams.get("h"))),m(o=>{var a;let n=new Map,i=document.createNodeIterator(e,NodeFilter.SHOW_TEXT);for(let s=i.nextNode();s;s=i.nextNode())if((a=s.parentElement)!=null&&a.offsetHeight){let p=s.textContent,c=o(p);c.length>p.length&&n.set(s,c)}for(let[s,p]of n){let{childNodes:c}=x("span",null,p);s.replaceWith(...Array.from(c))}return{ref:e,nodes:n}}))}function as(e,{viewport$:t,main$:r}){let o=e.closest(".md-grid"),n=o.offsetTop-o.parentElement.offsetTop;return z([r,t]).pipe(m(([{offset:i,height:a},{offset:{y:s}}])=>(a=a+Math.min(n,Math.max(0,s-i))-n,{height:a,locked:s>=i+n})),K((i,a)=>i.height===a.height&&i.locked===a.locked))}function Jr(e,o){var n=o,{header$:t}=n,r=io(n,["header$"]);let i=P(".md-sidebar__scrollwrap",e),{y:a}=Ue(i);return C(()=>{let s=new g,p=s.pipe(X(),ne(!0)),c=s.pipe(Le(0,me));return c.pipe(ee(t)).subscribe({next([{height:l},{height:f}]){i.style.height=`${l-2*a}px`,e.style.top=`${f}px`},complete(){i.style.height="",e.style.top=""}}),c.pipe(Ae()).subscribe(()=>{for(let l of $(".md-nav__link--active[href]",e)){if(!l.clientHeight)continue;let f=l.closest(".md-sidebar__scrollwrap");if(typeof f!="undefined"){let u=l.offsetTop-f.offsetTop,{height:h}=ce(f);f.scrollTo({top:u-h/2})}}}),ue($("label[tabindex]",e)).pipe(oe(l=>d(l,"click").pipe(be(se),m(()=>l),U(p)))).subscribe(l=>{let f=P(`[id="${l.htmlFor}"]`);P(`[aria-labelledby="${l.id}"]`).setAttribute("aria-expanded",`${f.checked}`)}),as(e,r).pipe(E(l=>s.next(l)),L(()=>s.complete()),m(l=>R({ref:e},l)))})}function fi(e,t){if(typeof t!="undefined"){let r=`https://api.github.com/repos/${e}/${t}`;return Ct(Ne(`${r}/releases/latest`).pipe(ve(()=>O),m(o=>({version:o.tag_name})),Be({})),Ne(r).pipe(ve(()=>O),m(o=>({stars:o.stargazers_count,forks:o.forks_count})),Be({}))).pipe(m(([o,n])=>R(R({},o),n)))}else{let r=`https://api.github.com/users/${e}`;return Ne(r).pipe(m(o=>({repositories:o.public_repos})),Be({}))}}function ui(e,t){let r=`https://${e}/api/v4/projects/${encodeURIComponent(t)}`;return Ne(r).pipe(ve(()=>O),m(({star_count:o,forks_count:n})=>({stars:o,forks:n})),Be({}))}function di(e){let t=e.match(/^.+github\.com\/([^/]+)\/?([^/]+)?/i);if(t){let[,r,o]=t;return fi(r,o)}if(t=e.match(/^.+?([^/]*gitlab[^/]+)\/(.+?)\/?$/i),t){let[,r,o]=t;return ui(r,o)}return O}var ss;function cs(e){return ss||(ss=C(()=>{let t=__md_get("__source",sessionStorage);if(t)return I(t);if(ae("consent").length){let o=__md_get("__consent");if(!(o&&o.github))return O}return di(e.href).pipe(E(o=>__md_set("__source",o,sessionStorage)))}).pipe(ve(()=>O),b(t=>Object.keys(t).length>0),m(t=>({facts:t})),G(1)))}function hi(e){let t=P(":scope > :last-child",e);return C(()=>{let r=new g;return r.subscribe(({facts:o})=>{t.appendChild(Sn(o)),t.classList.add("md-source__repository--active")}),cs(e).pipe(E(o=>r.next(o)),L(()=>r.complete()),m(o=>R({ref:e},o)))})}function ps(e,{viewport$:t,header$:r}){return ge(document.body).pipe(v(()=>mr(e,{header$:r,viewport$:t})),m(({offset:{y:o}})=>({hidden:o>=10})),Z("hidden"))}function bi(e,t){return C(()=>{let r=new g;return r.subscribe({next({hidden:o}){e.hidden=o},complete(){e.hidden=!1}}),(B("navigation.tabs.sticky")?I({hidden:!1}):ps(e,t)).pipe(E(o=>r.next(o)),L(()=>r.complete()),m(o=>R({ref:e},o)))})}function ls(e,{viewport$:t,header$:r}){let o=new Map,n=$(".md-nav__link",e);for(let s of n){let p=decodeURIComponent(s.hash.substring(1)),c=fe(`[id="${p}"]`);typeof c!="undefined"&&o.set(s,c)}let i=r.pipe(Z("height"),m(({height:s})=>{let p=Se("main"),c=P(":scope > :first-child",p);return s+.8*(c.offsetTop-p.offsetTop)}),pe());return ge(document.body).pipe(Z("height"),v(s=>C(()=>{let p=[];return 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s.entries())l.classList.add("md-nav__link--passed"),l.classList.toggle("md-nav__link--active",c===s.length-1)}),B("toc.follow")){let s=S(t.pipe(_e(1),m(()=>{})),t.pipe(_e(250),m(()=>"smooth")));i.pipe(b(({prev:p})=>p.length>0),We(o.pipe(be(se))),ee(s)).subscribe(([[{prev:p}],c])=>{let[l]=p[p.length-1];if(l.offsetHeight){let f=cr(l);if(typeof f!="undefined"){let u=l.offsetTop-f.offsetTop,{height:h}=ce(f);f.scrollTo({top:u-h/2,behavior:c})}}})}return B("navigation.tracking")&&t.pipe(U(a),Z("offset"),_e(250),Ce(1),U(n.pipe(Ce(1))),st({delay:250}),ee(i)).subscribe(([,{prev:s}])=>{let p=xe(),c=s[s.length-1];if(c&&c.length){let[l]=c,{hash:f}=new URL(l.href);p.hash!==f&&(p.hash=f,history.replaceState({},"",`${p}`))}else p.hash="",history.replaceState({},"",`${p}`)}),ls(e,{viewport$:t,header$:r}).pipe(E(s=>i.next(s)),L(()=>i.complete()),m(s=>R({ref:e},s)))})}function ms(e,{viewport$:t,main$:r,target$:o}){let 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wi({viewport$:e,tablet$:t}){z([Ve("search"),t]).pipe(m(([r,o])=>r&&!o),v(r=>I(r).pipe(Ge(r?400:100))),ee(e)).subscribe(([r,{offset:{y:o}}])=>{if(r)document.body.setAttribute("data-md-scrolllock",""),document.body.style.top=`-${o}px`;else{let n=-1*parseInt(document.body.style.top,10);document.body.removeAttribute("data-md-scrolllock"),document.body.style.top="",n&&window.scrollTo(0,n)}})}Object.entries||(Object.entries=function(e){let t=[];for(let r of Object.keys(e))t.push([r,e[r]]);return t});Object.values||(Object.values=function(e){let t=[];for(let r of Object.keys(e))t.push(e[r]);return t});typeof Element!="undefined"&&(Element.prototype.scrollTo||(Element.prototype.scrollTo=function(e,t){typeof e=="object"?(this.scrollLeft=e.left,this.scrollTop=e.top):(this.scrollLeft=e,this.scrollTop=t)}),Element.prototype.replaceWith||(Element.prototype.replaceWith=function(...e){let t=this.parentNode;if(t){e.length===0&&t.removeChild(this);for(let r=e.length-1;r>=0;r--){let o=e[r];typeof o=="string"?o=document.createTextNode(o):o.parentNode&&o.parentNode.removeChild(o),r?t.insertBefore(this.previousSibling,o):t.replaceChild(o,this)}}}));function us(){return location.protocol==="file:"?wt(`${new URL("search/search_index.js",Xr.base)}`).pipe(m(()=>__index),G(1)):Ne(new URL("search/search_index.json",Xr.base))}document.documentElement.classList.remove("no-js");document.documentElement.classList.add("js");var ot=Yo(),jt=nn(),Ot=cn(jt),Zr=on(),Oe=bn(),hr=$t("(min-width: 960px)"),Si=$t("(min-width: 1220px)"),Oi=pn(),Xr=ye(),Mi=document.forms.namedItem("search")?us():Ke,eo=new g;Bn({alert$:eo});var to=new g;B("navigation.instant")&&Zn({location$:jt,viewport$:Oe,progress$:to}).subscribe(ot);var Ti;((Ti=Xr.version)==null?void 0:Ti.provider)==="mike"&&ii({document$:ot});S(jt,Ot).pipe(Ge(125)).subscribe(()=>{Je("drawer",!1),Je("search",!1)});Zr.pipe(b(({mode:e})=>e==="global")).subscribe(e=>{switch(e.type){case"p":case",":let t=fe("link[rel=prev]");typeof t!="undefined"&&pt(t);break;case"n":case".":let r=fe("link[rel=next]");typeof r!="undefined"&&pt(r);break;case"Enter":let o=Re();o instanceof HTMLLabelElement&&o.click()}});xi({viewport$:Oe,document$:ot});yi({document$:ot,tablet$:hr});Ei({document$:ot});wi({viewport$:Oe,tablet$:hr});var rt=Nn(Se("header"),{viewport$:Oe}),Ft=ot.pipe(m(()=>Se("main")),v(e=>Qn(e,{viewport$:Oe,header$:rt})),G(1)),ds=S(...ae("consent").map(e=>xn(e,{target$:Ot})),...ae("dialog").map(e=>Dn(e,{alert$:eo})),...ae("header").map(e=>zn(e,{viewport$:Oe,header$:rt,main$:Ft})),...ae("palette").map(e=>Kn(e)),...ae("progress").map(e=>Yn(e,{progress$:to})),...ae("search").map(e=>li(e,{index$:Mi,keyboard$:Zr})),...ae("source").map(e=>hi(e))),hs=C(()=>S(...ae("announce").map(e=>gn(e)),...ae("content").map(e=>Un(e,{viewport$:Oe,target$:Ot,print$:Oi})),...ae("content").map(e=>B("search.highlight")?mi(e,{index$:Mi,location$:jt}):O),...ae("header-title").map(e=>qn(e,{viewport$:Oe,header$:rt})),...ae("sidebar").map(e=>e.getAttribute("data-md-type")==="navigation"?Nr(Si,()=>Jr(e,{viewport$:Oe,header$:rt,main$:Ft})):Nr(hr,()=>Jr(e,{viewport$:Oe,header$:rt,main$:Ft}))),...ae("tabs").map(e=>bi(e,{viewport$:Oe,header$:rt})),...ae("toc").map(e=>vi(e,{viewport$:Oe,header$:rt,main$:Ft,target$:Ot})),...ae("top").map(e=>gi(e,{viewport$:Oe,header$:rt,main$:Ft,target$:Ot})))),Li=ot.pipe(v(()=>hs),Pe(ds),G(1));Li.subscribe();window.document$=ot;window.location$=jt;window.target$=Ot;window.keyboard$=Zr;window.viewport$=Oe;window.tablet$=hr;window.screen$=Si;window.print$=Oi;window.alert$=eo;window.progress$=to;window.component$=Li;})(); +//# sourceMappingURL=bundle.fe8b6f2b.min.js.map + diff --git a/assets/javascripts/bundle.fe8b6f2b.min.js.map b/assets/javascripts/bundle.fe8b6f2b.min.js.map new file mode 100644 index 0000000..8263585 --- /dev/null +++ b/assets/javascripts/bundle.fe8b6f2b.min.js.map @@ -0,0 +1,7 @@ +{ + "version": 3, + "sources": ["node_modules/focus-visible/dist/focus-visible.js", "node_modules/clipboard/dist/clipboard.js", "node_modules/escape-html/index.js", "src/templates/assets/javascripts/bundle.ts", "node_modules/rxjs/node_modules/tslib/tslib.es6.js", "node_modules/rxjs/src/internal/util/isFunction.ts", "node_modules/rxjs/src/internal/util/createErrorClass.ts", "node_modules/rxjs/src/internal/util/UnsubscriptionError.ts", "node_modules/rxjs/src/internal/util/arrRemove.ts", "node_modules/rxjs/src/internal/Subscription.ts", "node_modules/rxjs/src/internal/config.ts", "node_modules/rxjs/src/internal/scheduler/timeoutProvider.ts", "node_modules/rxjs/src/internal/util/reportUnhandledError.ts", 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"node_modules/rxjs/src/internal/util/throwUnobservableError.ts", "node_modules/rxjs/src/internal/symbol/iterator.ts", "node_modules/rxjs/src/internal/util/isIterable.ts", "node_modules/rxjs/src/internal/util/isReadableStreamLike.ts", "node_modules/rxjs/src/internal/observable/innerFrom.ts", "node_modules/rxjs/src/internal/util/executeSchedule.ts", "node_modules/rxjs/src/internal/operators/observeOn.ts", "node_modules/rxjs/src/internal/operators/subscribeOn.ts", "node_modules/rxjs/src/internal/scheduled/scheduleObservable.ts", "node_modules/rxjs/src/internal/scheduled/schedulePromise.ts", "node_modules/rxjs/src/internal/scheduled/scheduleArray.ts", "node_modules/rxjs/src/internal/scheduled/scheduleIterable.ts", "node_modules/rxjs/src/internal/scheduled/scheduleAsyncIterable.ts", "node_modules/rxjs/src/internal/scheduled/scheduleReadableStreamLike.ts", "node_modules/rxjs/src/internal/scheduled/scheduled.ts", "node_modules/rxjs/src/internal/observable/from.ts", "node_modules/rxjs/src/internal/observable/of.ts", "node_modules/rxjs/src/internal/observable/throwError.ts", "node_modules/rxjs/src/internal/util/EmptyError.ts", "node_modules/rxjs/src/internal/util/isDate.ts", "node_modules/rxjs/src/internal/operators/map.ts", "node_modules/rxjs/src/internal/util/mapOneOrManyArgs.ts", "node_modules/rxjs/src/internal/util/argsArgArrayOrObject.ts", "node_modules/rxjs/src/internal/util/createObject.ts", "node_modules/rxjs/src/internal/observable/combineLatest.ts", "node_modules/rxjs/src/internal/operators/mergeInternals.ts", "node_modules/rxjs/src/internal/operators/mergeMap.ts", "node_modules/rxjs/src/internal/operators/mergeAll.ts", "node_modules/rxjs/src/internal/operators/concatAll.ts", "node_modules/rxjs/src/internal/observable/concat.ts", "node_modules/rxjs/src/internal/observable/defer.ts", "node_modules/rxjs/src/internal/observable/fromEvent.ts", "node_modules/rxjs/src/internal/observable/fromEventPattern.ts", "node_modules/rxjs/src/internal/observable/timer.ts", "node_modules/rxjs/src/internal/observable/merge.ts", "node_modules/rxjs/src/internal/observable/never.ts", "node_modules/rxjs/src/internal/util/argsOrArgArray.ts", "node_modules/rxjs/src/internal/operators/filter.ts", "node_modules/rxjs/src/internal/observable/zip.ts", "node_modules/rxjs/src/internal/operators/audit.ts", "node_modules/rxjs/src/internal/operators/auditTime.ts", "node_modules/rxjs/src/internal/operators/bufferCount.ts", "node_modules/rxjs/src/internal/operators/catchError.ts", "node_modules/rxjs/src/internal/operators/scanInternals.ts", "node_modules/rxjs/src/internal/operators/combineLatest.ts", "node_modules/rxjs/src/internal/operators/combineLatestWith.ts", "node_modules/rxjs/src/internal/operators/debounce.ts", "node_modules/rxjs/src/internal/operators/debounceTime.ts", "node_modules/rxjs/src/internal/operators/defaultIfEmpty.ts", "node_modules/rxjs/src/internal/operators/take.ts", 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"sourcesContent": ["(function (global, factory) {\n typeof exports === 'object' && typeof module !== 'undefined' ? factory() :\n typeof define === 'function' && define.amd ? define(factory) :\n (factory());\n}(this, (function () { 'use strict';\n\n /**\n * Applies the :focus-visible polyfill at the given scope.\n * A scope in this case is either the top-level Document or a Shadow Root.\n *\n * @param {(Document|ShadowRoot)} scope\n * @see https://github.com/WICG/focus-visible\n */\n function applyFocusVisiblePolyfill(scope) {\n var hadKeyboardEvent = true;\n var hadFocusVisibleRecently = false;\n var hadFocusVisibleRecentlyTimeout = null;\n\n var inputTypesAllowlist = {\n text: true,\n search: true,\n url: true,\n tel: true,\n email: true,\n password: true,\n number: true,\n date: true,\n month: true,\n week: true,\n time: true,\n datetime: true,\n 'datetime-local': true\n };\n\n /**\n * Helper function for legacy browsers and iframes which sometimes focus\n * elements like document, body, and non-interactive SVG.\n * @param {Element} el\n */\n function isValidFocusTarget(el) {\n if (\n el &&\n el !== document &&\n el.nodeName !== 'HTML' &&\n el.nodeName !== 'BODY' &&\n 'classList' in el &&\n 'contains' in el.classList\n ) {\n return true;\n }\n return false;\n }\n\n /**\n * Computes whether the given element should automatically trigger the\n * `focus-visible` class being added, i.e. whether it should always match\n * `:focus-visible` when focused.\n * @param {Element} el\n * @return {boolean}\n */\n function focusTriggersKeyboardModality(el) {\n var type = el.type;\n var tagName = el.tagName;\n\n if (tagName === 'INPUT' && inputTypesAllowlist[type] && !el.readOnly) {\n return true;\n }\n\n if (tagName === 'TEXTAREA' && !el.readOnly) {\n return true;\n }\n\n if (el.isContentEditable) {\n return true;\n }\n\n return false;\n }\n\n /**\n * Add the `focus-visible` class to the given element if it was not added by\n * the author.\n * @param {Element} el\n */\n function addFocusVisibleClass(el) {\n if (el.classList.contains('focus-visible')) {\n return;\n }\n el.classList.add('focus-visible');\n el.setAttribute('data-focus-visible-added', '');\n }\n\n /**\n * Remove the `focus-visible` class from the given element if it was not\n * originally added by the author.\n * @param {Element} el\n */\n function removeFocusVisibleClass(el) {\n if (!el.hasAttribute('data-focus-visible-added')) {\n return;\n }\n el.classList.remove('focus-visible');\n el.removeAttribute('data-focus-visible-added');\n }\n\n /**\n * If the most recent user interaction was via the keyboard;\n * and the key press did not include a meta, alt/option, or control key;\n * then the modality is keyboard. Otherwise, the modality is not keyboard.\n * Apply `focus-visible` to any current active element and keep track\n * of our keyboard modality state with `hadKeyboardEvent`.\n * @param {KeyboardEvent} e\n */\n function onKeyDown(e) {\n if (e.metaKey || e.altKey || e.ctrlKey) {\n return;\n }\n\n if (isValidFocusTarget(scope.activeElement)) {\n addFocusVisibleClass(scope.activeElement);\n }\n\n hadKeyboardEvent = true;\n }\n\n /**\n * If at any point a user clicks with a pointing device, ensure that we change\n * the modality away from keyboard.\n * This avoids the situation where a user presses a key on an already focused\n * element, and then clicks on a different element, focusing it with a\n * pointing device, while we still think we're in keyboard modality.\n * @param {Event} e\n */\n function onPointerDown(e) {\n hadKeyboardEvent = false;\n }\n\n /**\n * On `focus`, add the `focus-visible` class to the target if:\n * - the target received focus as a result of keyboard navigation, or\n * - the event target is an element that will likely require interaction\n * via the keyboard (e.g. a text box)\n * @param {Event} e\n */\n function onFocus(e) {\n // Prevent IE from focusing the document or HTML element.\n if (!isValidFocusTarget(e.target)) {\n return;\n }\n\n if (hadKeyboardEvent || focusTriggersKeyboardModality(e.target)) {\n addFocusVisibleClass(e.target);\n }\n }\n\n /**\n * On `blur`, remove the `focus-visible` class from the target.\n * @param {Event} e\n */\n function onBlur(e) {\n if (!isValidFocusTarget(e.target)) {\n return;\n }\n\n if (\n e.target.classList.contains('focus-visible') ||\n e.target.hasAttribute('data-focus-visible-added')\n ) {\n // To detect a tab/window switch, we look for a blur event followed\n // rapidly by a visibility change.\n // If we don't see a visibility change within 100ms, it's probably a\n // regular focus change.\n hadFocusVisibleRecently = true;\n window.clearTimeout(hadFocusVisibleRecentlyTimeout);\n hadFocusVisibleRecentlyTimeout = window.setTimeout(function() {\n hadFocusVisibleRecently = false;\n }, 100);\n removeFocusVisibleClass(e.target);\n }\n }\n\n /**\n * If the user changes tabs, keep track of whether or not the previously\n * focused element had .focus-visible.\n * @param {Event} e\n */\n function onVisibilityChange(e) {\n if (document.visibilityState === 'hidden') {\n // If the tab becomes active again, the browser will handle calling focus\n // on the element (Safari actually calls it twice).\n // If this tab change caused a blur on an element with focus-visible,\n // re-apply the class when the user switches back to the tab.\n if (hadFocusVisibleRecently) {\n hadKeyboardEvent = true;\n }\n addInitialPointerMoveListeners();\n }\n }\n\n /**\n * Add a group of listeners to detect usage of any pointing devices.\n * These listeners will be added when the polyfill first loads, and anytime\n * the window is blurred, so that they are active when the window regains\n * focus.\n */\n function addInitialPointerMoveListeners() {\n document.addEventListener('mousemove', onInitialPointerMove);\n document.addEventListener('mousedown', onInitialPointerMove);\n document.addEventListener('mouseup', onInitialPointerMove);\n document.addEventListener('pointermove', onInitialPointerMove);\n document.addEventListener('pointerdown', onInitialPointerMove);\n document.addEventListener('pointerup', onInitialPointerMove);\n document.addEventListener('touchmove', onInitialPointerMove);\n document.addEventListener('touchstart', onInitialPointerMove);\n document.addEventListener('touchend', onInitialPointerMove);\n }\n\n function removeInitialPointerMoveListeners() {\n document.removeEventListener('mousemove', onInitialPointerMove);\n document.removeEventListener('mousedown', onInitialPointerMove);\n document.removeEventListener('mouseup', onInitialPointerMove);\n document.removeEventListener('pointermove', onInitialPointerMove);\n document.removeEventListener('pointerdown', onInitialPointerMove);\n document.removeEventListener('pointerup', onInitialPointerMove);\n document.removeEventListener('touchmove', onInitialPointerMove);\n document.removeEventListener('touchstart', onInitialPointerMove);\n document.removeEventListener('touchend', onInitialPointerMove);\n }\n\n /**\n * When the polfyill first loads, assume the user is in keyboard modality.\n * If any event is received from a pointing device (e.g. mouse, pointer,\n * touch), turn off keyboard modality.\n * This accounts for situations where focus enters the page from the URL bar.\n * @param {Event} e\n */\n function onInitialPointerMove(e) {\n // Work around a Safari quirk that fires a mousemove on whenever the\n // window blurs, even if you're tabbing out of the page. \u00AF\\_(\u30C4)_/\u00AF\n if (e.target.nodeName && e.target.nodeName.toLowerCase() === 'html') {\n return;\n }\n\n hadKeyboardEvent = false;\n removeInitialPointerMoveListeners();\n }\n\n // For some kinds of state, we are interested in changes at the global scope\n // only. For example, global pointer input, global key presses and global\n // visibility change should affect the state at every scope:\n document.addEventListener('keydown', onKeyDown, true);\n document.addEventListener('mousedown', onPointerDown, true);\n document.addEventListener('pointerdown', onPointerDown, true);\n document.addEventListener('touchstart', onPointerDown, true);\n document.addEventListener('visibilitychange', onVisibilityChange, true);\n\n addInitialPointerMoveListeners();\n\n // For focus and blur, we specifically care about state changes in the local\n // scope. This is because focus / blur events that originate from within a\n // shadow root are not re-dispatched from the host element if it was already\n // the active element in its own scope:\n scope.addEventListener('focus', onFocus, true);\n scope.addEventListener('blur', onBlur, true);\n\n // We detect that a node is a ShadowRoot by ensuring that it is a\n // DocumentFragment and also has a host property. This check covers native\n // implementation and polyfill implementation transparently. If we only cared\n // about the native implementation, we could just check if the scope was\n // an instance of a ShadowRoot.\n if (scope.nodeType === Node.DOCUMENT_FRAGMENT_NODE && scope.host) {\n // Since a ShadowRoot is a special kind of DocumentFragment, it does not\n // have a root element to add a class to. So, we add this attribute to the\n // host element instead:\n scope.host.setAttribute('data-js-focus-visible', '');\n } else if (scope.nodeType === Node.DOCUMENT_NODE) {\n document.documentElement.classList.add('js-focus-visible');\n document.documentElement.setAttribute('data-js-focus-visible', '');\n }\n }\n\n // It is important to wrap all references to global window and document in\n // these checks to support server-side rendering use cases\n // @see https://github.com/WICG/focus-visible/issues/199\n if (typeof window !== 'undefined' && typeof document !== 'undefined') {\n // Make the polyfill helper globally available. This can be used as a signal\n // to interested libraries that wish to coordinate with the polyfill for e.g.,\n // applying the polyfill to a shadow root:\n window.applyFocusVisiblePolyfill = applyFocusVisiblePolyfill;\n\n // Notify interested libraries of the polyfill's presence, in case the\n // polyfill was loaded lazily:\n var event;\n\n try {\n event = new CustomEvent('focus-visible-polyfill-ready');\n } catch (error) {\n // IE11 does not support using CustomEvent as a constructor directly:\n event = document.createEvent('CustomEvent');\n event.initCustomEvent('focus-visible-polyfill-ready', false, false, {});\n }\n\n window.dispatchEvent(event);\n }\n\n if (typeof document !== 'undefined') {\n // Apply the polyfill to the global document, so that no JavaScript\n // coordination is required to use the polyfill in the top-level document:\n applyFocusVisiblePolyfill(document);\n }\n\n})));\n", "/*!\n * clipboard.js v2.0.11\n * https://clipboardjs.com/\n *\n * Licensed MIT \u00A9 Zeno Rocha\n */\n(function webpackUniversalModuleDefinition(root, factory) {\n\tif(typeof exports === 'object' && typeof module === 'object')\n\t\tmodule.exports = factory();\n\telse if(typeof define === 'function' && define.amd)\n\t\tdefine([], factory);\n\telse if(typeof exports === 'object')\n\t\texports[\"ClipboardJS\"] = factory();\n\telse\n\t\troot[\"ClipboardJS\"] = factory();\n})(this, function() {\nreturn /******/ (function() { // webpackBootstrap\n/******/ \tvar __webpack_modules__ = ({\n\n/***/ 686:\n/***/ (function(__unused_webpack_module, __webpack_exports__, __webpack_require__) {\n\n\"use strict\";\n\n// EXPORTS\n__webpack_require__.d(__webpack_exports__, {\n \"default\": function() { return /* binding */ clipboard; }\n});\n\n// EXTERNAL MODULE: ./node_modules/tiny-emitter/index.js\nvar tiny_emitter = __webpack_require__(279);\nvar tiny_emitter_default = /*#__PURE__*/__webpack_require__.n(tiny_emitter);\n// EXTERNAL MODULE: ./node_modules/good-listener/src/listen.js\nvar listen = __webpack_require__(370);\nvar listen_default = /*#__PURE__*/__webpack_require__.n(listen);\n// EXTERNAL MODULE: ./node_modules/select/src/select.js\nvar src_select = __webpack_require__(817);\nvar select_default = /*#__PURE__*/__webpack_require__.n(src_select);\n;// CONCATENATED MODULE: ./src/common/command.js\n/**\n * Executes a given operation type.\n * @param {String} type\n * @return {Boolean}\n */\nfunction command(type) {\n try {\n return document.execCommand(type);\n } catch (err) {\n return false;\n }\n}\n;// CONCATENATED MODULE: ./src/actions/cut.js\n\n\n/**\n * Cut action wrapper.\n * @param {String|HTMLElement} target\n * @return {String}\n */\n\nvar ClipboardActionCut = function ClipboardActionCut(target) {\n var selectedText = select_default()(target);\n command('cut');\n return selectedText;\n};\n\n/* harmony default export */ var actions_cut = (ClipboardActionCut);\n;// CONCATENATED MODULE: ./src/common/create-fake-element.js\n/**\n * Creates a fake textarea element with a value.\n * @param {String} value\n * @return {HTMLElement}\n */\nfunction createFakeElement(value) {\n var isRTL = document.documentElement.getAttribute('dir') === 'rtl';\n var fakeElement = document.createElement('textarea'); // Prevent zooming on iOS\n\n fakeElement.style.fontSize = '12pt'; // Reset box model\n\n fakeElement.style.border = '0';\n fakeElement.style.padding = '0';\n fakeElement.style.margin = '0'; // Move element out of screen horizontally\n\n fakeElement.style.position = 'absolute';\n fakeElement.style[isRTL ? 'right' : 'left'] = '-9999px'; // Move element to the same position vertically\n\n var yPosition = window.pageYOffset || document.documentElement.scrollTop;\n fakeElement.style.top = \"\".concat(yPosition, \"px\");\n fakeElement.setAttribute('readonly', '');\n fakeElement.value = value;\n return fakeElement;\n}\n;// CONCATENATED MODULE: ./src/actions/copy.js\n\n\n\n/**\n * Create fake copy action wrapper using a fake element.\n * @param {String} target\n * @param {Object} options\n * @return {String}\n */\n\nvar fakeCopyAction = function fakeCopyAction(value, options) {\n var fakeElement = createFakeElement(value);\n options.container.appendChild(fakeElement);\n var selectedText = select_default()(fakeElement);\n command('copy');\n fakeElement.remove();\n return selectedText;\n};\n/**\n * Copy action wrapper.\n * @param {String|HTMLElement} target\n * @param {Object} options\n * @return {String}\n */\n\n\nvar ClipboardActionCopy = function ClipboardActionCopy(target) {\n var options = arguments.length > 1 && arguments[1] !== undefined ? arguments[1] : {\n container: document.body\n };\n var selectedText = '';\n\n if (typeof target === 'string') {\n selectedText = fakeCopyAction(target, options);\n } else if (target instanceof HTMLInputElement && !['text', 'search', 'url', 'tel', 'password'].includes(target === null || target === void 0 ? void 0 : target.type)) {\n // If input type doesn't support `setSelectionRange`. Simulate it. https://developer.mozilla.org/en-US/docs/Web/API/HTMLInputElement/setSelectionRange\n selectedText = fakeCopyAction(target.value, options);\n } else {\n selectedText = select_default()(target);\n command('copy');\n }\n\n return selectedText;\n};\n\n/* harmony default export */ var actions_copy = (ClipboardActionCopy);\n;// CONCATENATED MODULE: ./src/actions/default.js\nfunction _typeof(obj) { \"@babel/helpers - typeof\"; if (typeof Symbol === \"function\" && typeof Symbol.iterator === \"symbol\") { _typeof = function _typeof(obj) { return typeof obj; }; } else { _typeof = function _typeof(obj) { return obj && typeof Symbol === \"function\" && obj.constructor === Symbol && obj !== Symbol.prototype ? \"symbol\" : typeof obj; }; } return _typeof(obj); }\n\n\n\n/**\n * Inner function which performs selection from either `text` or `target`\n * properties and then executes copy or cut operations.\n * @param {Object} options\n */\n\nvar ClipboardActionDefault = function ClipboardActionDefault() {\n var options = arguments.length > 0 && arguments[0] !== undefined ? arguments[0] : {};\n // Defines base properties passed from constructor.\n var _options$action = options.action,\n action = _options$action === void 0 ? 'copy' : _options$action,\n container = options.container,\n target = options.target,\n text = options.text; // Sets the `action` to be performed which can be either 'copy' or 'cut'.\n\n if (action !== 'copy' && action !== 'cut') {\n throw new Error('Invalid \"action\" value, use either \"copy\" or \"cut\"');\n } // Sets the `target` property using an element that will be have its content copied.\n\n\n if (target !== undefined) {\n if (target && _typeof(target) === 'object' && target.nodeType === 1) {\n if (action === 'copy' && target.hasAttribute('disabled')) {\n throw new Error('Invalid \"target\" attribute. Please use \"readonly\" instead of \"disabled\" attribute');\n }\n\n if (action === 'cut' && (target.hasAttribute('readonly') || target.hasAttribute('disabled'))) {\n throw new Error('Invalid \"target\" attribute. You can\\'t cut text from elements with \"readonly\" or \"disabled\" attributes');\n }\n } else {\n throw new Error('Invalid \"target\" value, use a valid Element');\n }\n } // Define selection strategy based on `text` property.\n\n\n if (text) {\n return actions_copy(text, {\n container: container\n });\n } // Defines which selection strategy based on `target` property.\n\n\n if (target) {\n return action === 'cut' ? actions_cut(target) : actions_copy(target, {\n container: container\n });\n }\n};\n\n/* harmony default export */ var actions_default = (ClipboardActionDefault);\n;// CONCATENATED MODULE: ./src/clipboard.js\nfunction clipboard_typeof(obj) { \"@babel/helpers - typeof\"; if (typeof Symbol === \"function\" && typeof Symbol.iterator === \"symbol\") { clipboard_typeof = function _typeof(obj) { return typeof obj; }; } else { clipboard_typeof = function _typeof(obj) { return obj && typeof Symbol === \"function\" && obj.constructor === Symbol && obj !== Symbol.prototype ? \"symbol\" : typeof obj; }; } return clipboard_typeof(obj); }\n\nfunction _classCallCheck(instance, Constructor) { if (!(instance instanceof Constructor)) { throw new TypeError(\"Cannot call a class as a function\"); } }\n\nfunction _defineProperties(target, props) { for (var i = 0; i < props.length; i++) { var descriptor = props[i]; descriptor.enumerable = descriptor.enumerable || false; descriptor.configurable = true; if (\"value\" in descriptor) descriptor.writable = true; Object.defineProperty(target, descriptor.key, descriptor); } }\n\nfunction _createClass(Constructor, protoProps, staticProps) { if (protoProps) _defineProperties(Constructor.prototype, protoProps); if (staticProps) _defineProperties(Constructor, staticProps); return Constructor; }\n\nfunction _inherits(subClass, superClass) { if (typeof superClass !== \"function\" && superClass !== null) { throw new TypeError(\"Super expression must either be null or a function\"); } subClass.prototype = Object.create(superClass && superClass.prototype, { constructor: { value: subClass, writable: true, configurable: true } }); if (superClass) _setPrototypeOf(subClass, superClass); }\n\nfunction _setPrototypeOf(o, p) { _setPrototypeOf = Object.setPrototypeOf || function _setPrototypeOf(o, p) { o.__proto__ = p; return o; }; return _setPrototypeOf(o, p); }\n\nfunction _createSuper(Derived) { var hasNativeReflectConstruct = _isNativeReflectConstruct(); return function _createSuperInternal() { var Super = _getPrototypeOf(Derived), result; if (hasNativeReflectConstruct) { var NewTarget = _getPrototypeOf(this).constructor; result = Reflect.construct(Super, arguments, NewTarget); } else { result = Super.apply(this, arguments); } return _possibleConstructorReturn(this, result); }; }\n\nfunction _possibleConstructorReturn(self, call) { if (call && (clipboard_typeof(call) === \"object\" || typeof call === \"function\")) { return call; } return _assertThisInitialized(self); }\n\nfunction _assertThisInitialized(self) { if (self === void 0) { throw new ReferenceError(\"this hasn't been initialised - super() hasn't been called\"); } return self; }\n\nfunction _isNativeReflectConstruct() { if (typeof Reflect === \"undefined\" || !Reflect.construct) return false; if (Reflect.construct.sham) return false; if (typeof Proxy === \"function\") return true; try { Date.prototype.toString.call(Reflect.construct(Date, [], function () {})); return true; } catch (e) { return false; } }\n\nfunction _getPrototypeOf(o) { _getPrototypeOf = Object.setPrototypeOf ? Object.getPrototypeOf : function _getPrototypeOf(o) { return o.__proto__ || Object.getPrototypeOf(o); }; return _getPrototypeOf(o); }\n\n\n\n\n\n\n/**\n * Helper function to retrieve attribute value.\n * @param {String} suffix\n * @param {Element} element\n */\n\nfunction getAttributeValue(suffix, element) {\n var attribute = \"data-clipboard-\".concat(suffix);\n\n if (!element.hasAttribute(attribute)) {\n return;\n }\n\n return element.getAttribute(attribute);\n}\n/**\n * Base class which takes one or more elements, adds event listeners to them,\n * and instantiates a new `ClipboardAction` on each click.\n */\n\n\nvar Clipboard = /*#__PURE__*/function (_Emitter) {\n _inherits(Clipboard, _Emitter);\n\n var _super = _createSuper(Clipboard);\n\n /**\n * @param {String|HTMLElement|HTMLCollection|NodeList} trigger\n * @param {Object} options\n */\n function Clipboard(trigger, options) {\n var _this;\n\n _classCallCheck(this, Clipboard);\n\n _this = _super.call(this);\n\n _this.resolveOptions(options);\n\n _this.listenClick(trigger);\n\n return _this;\n }\n /**\n * Defines if attributes would be resolved using internal setter functions\n * or custom functions that were passed in the constructor.\n * @param {Object} options\n */\n\n\n _createClass(Clipboard, [{\n key: \"resolveOptions\",\n value: function resolveOptions() {\n var options = arguments.length > 0 && arguments[0] !== undefined ? arguments[0] : {};\n this.action = typeof options.action === 'function' ? options.action : this.defaultAction;\n this.target = typeof options.target === 'function' ? options.target : this.defaultTarget;\n this.text = typeof options.text === 'function' ? options.text : this.defaultText;\n this.container = clipboard_typeof(options.container) === 'object' ? options.container : document.body;\n }\n /**\n * Adds a click event listener to the passed trigger.\n * @param {String|HTMLElement|HTMLCollection|NodeList} trigger\n */\n\n }, {\n key: \"listenClick\",\n value: function listenClick(trigger) {\n var _this2 = this;\n\n this.listener = listen_default()(trigger, 'click', function (e) {\n return _this2.onClick(e);\n });\n }\n /**\n * Defines a new `ClipboardAction` on each click event.\n * @param {Event} e\n */\n\n }, {\n key: \"onClick\",\n value: function onClick(e) {\n var trigger = e.delegateTarget || e.currentTarget;\n var action = this.action(trigger) || 'copy';\n var text = actions_default({\n action: action,\n container: this.container,\n target: this.target(trigger),\n text: this.text(trigger)\n }); // Fires an event based on the copy operation result.\n\n this.emit(text ? 'success' : 'error', {\n action: action,\n text: text,\n trigger: trigger,\n clearSelection: function clearSelection() {\n if (trigger) {\n trigger.focus();\n }\n\n window.getSelection().removeAllRanges();\n }\n });\n }\n /**\n * Default `action` lookup function.\n * @param {Element} trigger\n */\n\n }, {\n key: \"defaultAction\",\n value: function defaultAction(trigger) {\n return getAttributeValue('action', trigger);\n }\n /**\n * Default `target` lookup function.\n * @param {Element} trigger\n */\n\n }, {\n key: \"defaultTarget\",\n value: function defaultTarget(trigger) {\n var selector = getAttributeValue('target', trigger);\n\n if (selector) {\n return document.querySelector(selector);\n }\n }\n /**\n * Allow fire programmatically a copy action\n * @param {String|HTMLElement} target\n * @param {Object} options\n * @returns Text copied.\n */\n\n }, {\n key: \"defaultText\",\n\n /**\n * Default `text` lookup function.\n * @param {Element} trigger\n */\n value: function defaultText(trigger) {\n return getAttributeValue('text', trigger);\n }\n /**\n * Destroy lifecycle.\n */\n\n }, {\n key: \"destroy\",\n value: function destroy() {\n this.listener.destroy();\n }\n }], [{\n key: \"copy\",\n value: function copy(target) {\n var options = arguments.length > 1 && arguments[1] !== undefined ? arguments[1] : {\n container: document.body\n };\n return actions_copy(target, options);\n }\n /**\n * Allow fire programmatically a cut action\n * @param {String|HTMLElement} target\n * @returns Text cutted.\n */\n\n }, {\n key: \"cut\",\n value: function cut(target) {\n return actions_cut(target);\n }\n /**\n * Returns the support of the given action, or all actions if no action is\n * given.\n * @param {String} [action]\n */\n\n }, {\n key: \"isSupported\",\n value: function isSupported() {\n var action = arguments.length > 0 && arguments[0] !== undefined ? arguments[0] : ['copy', 'cut'];\n var actions = typeof action === 'string' ? [action] : action;\n var support = !!document.queryCommandSupported;\n actions.forEach(function (action) {\n support = support && !!document.queryCommandSupported(action);\n });\n return support;\n }\n }]);\n\n return Clipboard;\n}((tiny_emitter_default()));\n\n/* harmony default export */ var clipboard = (Clipboard);\n\n/***/ }),\n\n/***/ 828:\n/***/ (function(module) {\n\nvar DOCUMENT_NODE_TYPE = 9;\n\n/**\n * A polyfill for Element.matches()\n */\nif (typeof Element !== 'undefined' && !Element.prototype.matches) {\n var proto = Element.prototype;\n\n proto.matches = proto.matchesSelector ||\n proto.mozMatchesSelector ||\n proto.msMatchesSelector ||\n proto.oMatchesSelector ||\n proto.webkitMatchesSelector;\n}\n\n/**\n * Finds the closest parent that matches a selector.\n *\n * @param {Element} element\n * @param {String} selector\n * @return {Function}\n */\nfunction closest (element, selector) {\n while (element && element.nodeType !== DOCUMENT_NODE_TYPE) {\n if (typeof element.matches === 'function' &&\n element.matches(selector)) {\n return element;\n }\n element = element.parentNode;\n }\n}\n\nmodule.exports = closest;\n\n\n/***/ }),\n\n/***/ 438:\n/***/ (function(module, __unused_webpack_exports, __webpack_require__) {\n\nvar closest = __webpack_require__(828);\n\n/**\n * Delegates event to a selector.\n *\n * @param {Element} element\n * @param {String} selector\n * @param {String} type\n * @param {Function} callback\n * @param {Boolean} useCapture\n * @return {Object}\n */\nfunction _delegate(element, selector, type, callback, useCapture) {\n var listenerFn = listener.apply(this, arguments);\n\n element.addEventListener(type, listenerFn, useCapture);\n\n return {\n destroy: function() {\n element.removeEventListener(type, listenerFn, useCapture);\n }\n }\n}\n\n/**\n * Delegates event to a selector.\n *\n * @param {Element|String|Array} [elements]\n * @param {String} selector\n * @param {String} type\n * @param {Function} callback\n * @param {Boolean} useCapture\n * @return {Object}\n */\nfunction delegate(elements, selector, type, callback, useCapture) {\n // Handle the regular Element usage\n if (typeof elements.addEventListener === 'function') {\n return _delegate.apply(null, arguments);\n }\n\n // Handle Element-less usage, it defaults to global delegation\n if (typeof type === 'function') {\n // Use `document` as the first parameter, then apply arguments\n // This is a short way to .unshift `arguments` without running into deoptimizations\n return _delegate.bind(null, document).apply(null, arguments);\n }\n\n // Handle Selector-based usage\n if (typeof elements === 'string') {\n elements = document.querySelectorAll(elements);\n }\n\n // Handle Array-like based usage\n return Array.prototype.map.call(elements, function (element) {\n return _delegate(element, selector, type, callback, useCapture);\n });\n}\n\n/**\n * Finds closest match and invokes callback.\n *\n * @param {Element} element\n * @param {String} selector\n * @param {String} type\n * @param {Function} callback\n * @return {Function}\n */\nfunction listener(element, selector, type, callback) {\n return function(e) {\n e.delegateTarget = closest(e.target, selector);\n\n if (e.delegateTarget) {\n callback.call(element, e);\n }\n }\n}\n\nmodule.exports = delegate;\n\n\n/***/ }),\n\n/***/ 879:\n/***/ (function(__unused_webpack_module, exports) {\n\n/**\n * Check if argument is a HTML element.\n *\n * @param {Object} value\n * @return {Boolean}\n */\nexports.node = function(value) {\n return value !== undefined\n && value instanceof HTMLElement\n && value.nodeType === 1;\n};\n\n/**\n * Check if argument is a list of HTML elements.\n *\n * @param {Object} value\n * @return {Boolean}\n */\nexports.nodeList = function(value) {\n var type = Object.prototype.toString.call(value);\n\n return value !== undefined\n && (type === '[object NodeList]' || type === '[object HTMLCollection]')\n && ('length' in value)\n && (value.length === 0 || exports.node(value[0]));\n};\n\n/**\n * Check if argument is a string.\n *\n * @param {Object} value\n * @return {Boolean}\n */\nexports.string = function(value) {\n return typeof value === 'string'\n || value instanceof String;\n};\n\n/**\n * Check if argument is a function.\n *\n * @param {Object} value\n * @return {Boolean}\n */\nexports.fn = function(value) {\n var type = Object.prototype.toString.call(value);\n\n return type === '[object Function]';\n};\n\n\n/***/ }),\n\n/***/ 370:\n/***/ (function(module, __unused_webpack_exports, __webpack_require__) {\n\nvar is = __webpack_require__(879);\nvar delegate = __webpack_require__(438);\n\n/**\n * Validates all params and calls the right\n * listener function based on its target type.\n *\n * @param {String|HTMLElement|HTMLCollection|NodeList} target\n * @param {String} type\n * @param {Function} callback\n * @return {Object}\n */\nfunction listen(target, type, callback) {\n if (!target && !type && !callback) {\n throw new Error('Missing required arguments');\n }\n\n if (!is.string(type)) {\n throw new TypeError('Second argument must be a String');\n }\n\n if (!is.fn(callback)) {\n throw new TypeError('Third argument must be a Function');\n }\n\n if (is.node(target)) {\n return listenNode(target, type, callback);\n }\n else if (is.nodeList(target)) {\n return listenNodeList(target, type, callback);\n }\n else if (is.string(target)) {\n return listenSelector(target, type, callback);\n }\n else {\n throw new TypeError('First argument must be a String, HTMLElement, HTMLCollection, or NodeList');\n }\n}\n\n/**\n * Adds an event listener to a HTML element\n * and returns a remove listener function.\n *\n * @param {HTMLElement} node\n * @param {String} type\n * @param {Function} callback\n * @return {Object}\n */\nfunction listenNode(node, type, callback) {\n node.addEventListener(type, callback);\n\n return {\n destroy: function() {\n node.removeEventListener(type, callback);\n }\n }\n}\n\n/**\n * Add an event listener to a list of HTML elements\n * and returns a remove listener function.\n *\n * @param {NodeList|HTMLCollection} nodeList\n * @param {String} type\n * @param {Function} callback\n * @return {Object}\n */\nfunction listenNodeList(nodeList, type, callback) {\n Array.prototype.forEach.call(nodeList, function(node) {\n node.addEventListener(type, callback);\n });\n\n return {\n destroy: function() {\n Array.prototype.forEach.call(nodeList, function(node) {\n node.removeEventListener(type, callback);\n });\n }\n }\n}\n\n/**\n * Add an event listener to a selector\n * and returns a remove listener function.\n *\n * @param {String} selector\n * @param {String} type\n * @param {Function} callback\n * @return {Object}\n */\nfunction listenSelector(selector, type, callback) {\n return delegate(document.body, selector, type, callback);\n}\n\nmodule.exports = listen;\n\n\n/***/ }),\n\n/***/ 817:\n/***/ (function(module) {\n\nfunction select(element) {\n var selectedText;\n\n if (element.nodeName === 'SELECT') {\n element.focus();\n\n selectedText = element.value;\n }\n else if (element.nodeName === 'INPUT' || element.nodeName === 'TEXTAREA') {\n var isReadOnly = element.hasAttribute('readonly');\n\n if (!isReadOnly) {\n element.setAttribute('readonly', '');\n }\n\n element.select();\n element.setSelectionRange(0, element.value.length);\n\n if (!isReadOnly) {\n element.removeAttribute('readonly');\n }\n\n selectedText = element.value;\n }\n else {\n if (element.hasAttribute('contenteditable')) {\n element.focus();\n }\n\n var selection = window.getSelection();\n var range = document.createRange();\n\n range.selectNodeContents(element);\n selection.removeAllRanges();\n selection.addRange(range);\n\n selectedText = selection.toString();\n }\n\n return selectedText;\n}\n\nmodule.exports = select;\n\n\n/***/ }),\n\n/***/ 279:\n/***/ (function(module) {\n\nfunction E () {\n // Keep this empty so it's easier to inherit from\n // (via https://github.com/lipsmack from https://github.com/scottcorgan/tiny-emitter/issues/3)\n}\n\nE.prototype = {\n on: function (name, callback, ctx) {\n var e = this.e || (this.e = {});\n\n (e[name] || (e[name] = [])).push({\n fn: callback,\n ctx: ctx\n });\n\n return this;\n },\n\n once: function (name, callback, ctx) {\n var self = this;\n function listener () {\n self.off(name, listener);\n callback.apply(ctx, arguments);\n };\n\n listener._ = callback\n return this.on(name, listener, ctx);\n },\n\n emit: function (name) {\n var data = [].slice.call(arguments, 1);\n var evtArr = ((this.e || (this.e = {}))[name] || []).slice();\n var i = 0;\n var len = evtArr.length;\n\n for (i; i < len; i++) {\n evtArr[i].fn.apply(evtArr[i].ctx, data);\n }\n\n return this;\n },\n\n off: function (name, callback) {\n var e = this.e || (this.e = {});\n var evts = e[name];\n var liveEvents = [];\n\n if (evts && callback) {\n for (var i = 0, len = evts.length; i < len; i++) {\n if (evts[i].fn !== callback && evts[i].fn._ !== callback)\n liveEvents.push(evts[i]);\n }\n }\n\n // Remove event from queue to prevent memory leak\n // Suggested by https://github.com/lazd\n // Ref: https://github.com/scottcorgan/tiny-emitter/commit/c6ebfaa9bc973b33d110a84a307742b7cf94c953#commitcomment-5024910\n\n (liveEvents.length)\n ? e[name] = liveEvents\n : delete e[name];\n\n return this;\n }\n};\n\nmodule.exports = E;\nmodule.exports.TinyEmitter = E;\n\n\n/***/ })\n\n/******/ \t});\n/************************************************************************/\n/******/ \t// The module cache\n/******/ \tvar __webpack_module_cache__ = {};\n/******/ \t\n/******/ \t// The require function\n/******/ \tfunction __webpack_require__(moduleId) {\n/******/ \t\t// Check if module is in cache\n/******/ \t\tif(__webpack_module_cache__[moduleId]) {\n/******/ \t\t\treturn __webpack_module_cache__[moduleId].exports;\n/******/ \t\t}\n/******/ \t\t// Create a new module (and put it into the cache)\n/******/ \t\tvar module = __webpack_module_cache__[moduleId] = {\n/******/ \t\t\t// no module.id needed\n/******/ \t\t\t// no module.loaded needed\n/******/ \t\t\texports: {}\n/******/ \t\t};\n/******/ \t\n/******/ \t\t// Execute the module function\n/******/ \t\t__webpack_modules__[moduleId](module, module.exports, __webpack_require__);\n/******/ \t\n/******/ \t\t// Return the exports of the module\n/******/ \t\treturn module.exports;\n/******/ \t}\n/******/ \t\n/************************************************************************/\n/******/ \t/* webpack/runtime/compat get default export */\n/******/ \t!function() {\n/******/ \t\t// getDefaultExport function for compatibility with non-harmony modules\n/******/ \t\t__webpack_require__.n = function(module) {\n/******/ \t\t\tvar getter = module && module.__esModule ?\n/******/ \t\t\t\tfunction() { return module['default']; } :\n/******/ \t\t\t\tfunction() { return module; };\n/******/ \t\t\t__webpack_require__.d(getter, { a: getter });\n/******/ \t\t\treturn getter;\n/******/ \t\t};\n/******/ \t}();\n/******/ \t\n/******/ \t/* webpack/runtime/define property getters */\n/******/ \t!function() {\n/******/ \t\t// define getter functions for harmony exports\n/******/ \t\t__webpack_require__.d = function(exports, definition) {\n/******/ \t\t\tfor(var key in definition) {\n/******/ \t\t\t\tif(__webpack_require__.o(definition, key) && !__webpack_require__.o(exports, key)) {\n/******/ \t\t\t\t\tObject.defineProperty(exports, key, { enumerable: true, get: definition[key] });\n/******/ \t\t\t\t}\n/******/ \t\t\t}\n/******/ \t\t};\n/******/ \t}();\n/******/ \t\n/******/ \t/* webpack/runtime/hasOwnProperty shorthand */\n/******/ \t!function() {\n/******/ \t\t__webpack_require__.o = function(obj, prop) { return Object.prototype.hasOwnProperty.call(obj, prop); }\n/******/ \t}();\n/******/ \t\n/************************************************************************/\n/******/ \t// module exports must be returned from runtime so entry inlining is disabled\n/******/ \t// startup\n/******/ \t// Load entry module and return exports\n/******/ \treturn __webpack_require__(686);\n/******/ })()\n.default;\n});", "/*!\n * escape-html\n * Copyright(c) 2012-2013 TJ Holowaychuk\n * Copyright(c) 2015 Andreas Lubbe\n * Copyright(c) 2015 Tiancheng \"Timothy\" Gu\n * MIT Licensed\n */\n\n'use strict';\n\n/**\n * Module variables.\n * @private\n */\n\nvar matchHtmlRegExp = /[\"'&<>]/;\n\n/**\n * Module exports.\n * @public\n */\n\nmodule.exports = escapeHtml;\n\n/**\n * Escape special characters in the given string of html.\n *\n * @param {string} string The string to escape for inserting into HTML\n * @return {string}\n * @public\n */\n\nfunction escapeHtml(string) {\n var str = '' + string;\n var match = matchHtmlRegExp.exec(str);\n\n if (!match) {\n return str;\n }\n\n var escape;\n var html = '';\n var index = 0;\n var lastIndex = 0;\n\n for (index = match.index; index < str.length; index++) {\n switch (str.charCodeAt(index)) {\n case 34: // \"\n escape = '"';\n break;\n case 38: // &\n escape = '&';\n break;\n case 39: // '\n escape = ''';\n break;\n case 60: // <\n escape = '<';\n break;\n case 62: // >\n escape = '>';\n break;\n default:\n continue;\n }\n\n if (lastIndex !== index) {\n html += str.substring(lastIndex, index);\n }\n\n lastIndex = index + 1;\n html += escape;\n }\n\n return lastIndex !== index\n ? html + str.substring(lastIndex, index)\n : html;\n}\n", "/*\n * Copyright (c) 2016-2024 Martin Donath \n *\n * Permission is hereby granted, free of charge, to any person obtaining a copy\n * of this software and associated documentation files (the \"Software\"), to\n * deal in the Software without restriction, including without limitation the\n * rights to use, copy, modify, merge, publish, distribute, sublicense, and/or\n * sell copies of the Software, and to permit persons to whom the Software is\n * furnished to do so, subject to the following conditions:\n *\n * The above copyright notice and this permission notice shall be included in\n * all copies or substantial portions of the Software.\n *\n * THE SOFTWARE IS PROVIDED \"AS IS\", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR\n * IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,\n * FITNESS FOR A PARTICULAR PURPOSE AND NON-INFRINGEMENT. IN NO EVENT SHALL THE\n * AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER\n * LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING\n * FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS\n * IN THE SOFTWARE.\n */\n\nimport \"focus-visible\"\n\nimport {\n EMPTY,\n NEVER,\n Observable,\n Subject,\n defer,\n delay,\n filter,\n map,\n merge,\n mergeWith,\n shareReplay,\n switchMap\n} from \"rxjs\"\n\nimport { configuration, feature } from \"./_\"\nimport {\n at,\n getActiveElement,\n getOptionalElement,\n requestJSON,\n setLocation,\n setToggle,\n watchDocument,\n watchKeyboard,\n watchLocation,\n watchLocationTarget,\n watchMedia,\n watchPrint,\n watchScript,\n watchViewport\n} from \"./browser\"\nimport {\n getComponentElement,\n getComponentElements,\n mountAnnounce,\n mountBackToTop,\n mountConsent,\n mountContent,\n mountDialog,\n mountHeader,\n mountHeaderTitle,\n mountPalette,\n mountProgress,\n mountSearch,\n mountSearchHiglight,\n mountSidebar,\n mountSource,\n mountTableOfContents,\n mountTabs,\n watchHeader,\n watchMain\n} from \"./components\"\nimport {\n SearchIndex,\n setupClipboardJS,\n setupInstantNavigation,\n setupVersionSelector\n} from \"./integrations\"\nimport {\n patchEllipsis,\n patchIndeterminate,\n patchScrollfix,\n patchScrolllock\n} from \"./patches\"\nimport \"./polyfills\"\n\n/* ----------------------------------------------------------------------------\n * Functions - @todo refactor\n * ------------------------------------------------------------------------- */\n\n/**\n * Fetch search index\n *\n * @returns Search index observable\n */\nfunction fetchSearchIndex(): Observable {\n if (location.protocol === \"file:\") {\n return watchScript(\n `${new URL(\"search/search_index.js\", config.base)}`\n )\n .pipe(\n // @ts-ignore - @todo fix typings\n map(() => __index),\n shareReplay(1)\n )\n } else {\n return requestJSON(\n new URL(\"search/search_index.json\", config.base)\n )\n }\n}\n\n/* ----------------------------------------------------------------------------\n * Application\n * ------------------------------------------------------------------------- */\n\n/* Yay, JavaScript is available */\ndocument.documentElement.classList.remove(\"no-js\")\ndocument.documentElement.classList.add(\"js\")\n\n/* Set up navigation observables and subjects */\nconst document$ = watchDocument()\nconst location$ = watchLocation()\nconst target$ = watchLocationTarget(location$)\nconst keyboard$ = watchKeyboard()\n\n/* Set up media observables */\nconst viewport$ = watchViewport()\nconst tablet$ = watchMedia(\"(min-width: 960px)\")\nconst screen$ = watchMedia(\"(min-width: 1220px)\")\nconst print$ = watchPrint()\n\n/* Retrieve search index, if search is enabled */\nconst config = configuration()\nconst index$ = document.forms.namedItem(\"search\")\n ? fetchSearchIndex()\n : NEVER\n\n/* Set up Clipboard.js integration */\nconst alert$ = new Subject()\nsetupClipboardJS({ alert$ })\n\n/* Set up progress indicator */\nconst progress$ = new Subject()\n\n/* Set up instant navigation, if enabled */\nif (feature(\"navigation.instant\"))\n setupInstantNavigation({ location$, viewport$, progress$ })\n .subscribe(document$)\n\n/* Set up version selector */\nif (config.version?.provider === \"mike\")\n setupVersionSelector({ document$ })\n\n/* Always close drawer and search on navigation */\nmerge(location$, target$)\n .pipe(\n delay(125)\n )\n .subscribe(() => {\n setToggle(\"drawer\", false)\n setToggle(\"search\", false)\n })\n\n/* Set up global keyboard handlers */\nkeyboard$\n .pipe(\n filter(({ mode }) => mode === \"global\")\n )\n .subscribe(key => {\n switch (key.type) {\n\n /* Go to previous page */\n case \"p\":\n case \",\":\n const prev = getOptionalElement(\"link[rel=prev]\")\n if (typeof prev !== \"undefined\")\n setLocation(prev)\n break\n\n /* Go to next page */\n case \"n\":\n case \".\":\n const next = getOptionalElement(\"link[rel=next]\")\n if (typeof next !== \"undefined\")\n setLocation(next)\n break\n\n /* Expand navigation, see https://bit.ly/3ZjG5io */\n case \"Enter\":\n const active = getActiveElement()\n if (active instanceof HTMLLabelElement)\n active.click()\n }\n })\n\n/* Set up patches */\npatchEllipsis({ viewport$, document$ })\npatchIndeterminate({ document$, tablet$ })\npatchScrollfix({ document$ })\npatchScrolllock({ viewport$, tablet$ })\n\n/* Set up header and main area observable */\nconst header$ = watchHeader(getComponentElement(\"header\"), { viewport$ })\nconst main$ = document$\n .pipe(\n map(() => getComponentElement(\"main\")),\n switchMap(el => watchMain(el, { viewport$, header$ })),\n shareReplay(1)\n )\n\n/* Set up control component observables */\nconst control$ = merge(\n\n /* Consent */\n ...getComponentElements(\"consent\")\n .map(el => mountConsent(el, { target$ })),\n\n /* Dialog */\n ...getComponentElements(\"dialog\")\n .map(el => mountDialog(el, { alert$ })),\n\n /* Header */\n ...getComponentElements(\"header\")\n .map(el => mountHeader(el, { viewport$, header$, main$ })),\n\n /* Color palette */\n ...getComponentElements(\"palette\")\n .map(el => mountPalette(el)),\n\n /* Progress bar */\n ...getComponentElements(\"progress\")\n .map(el => mountProgress(el, { progress$ })),\n\n /* Search */\n ...getComponentElements(\"search\")\n .map(el => mountSearch(el, { index$, keyboard$ })),\n\n /* Repository information */\n ...getComponentElements(\"source\")\n .map(el => mountSource(el))\n)\n\n/* Set up content component observables */\nconst content$ = defer(() => merge(\n\n /* Announcement bar */\n ...getComponentElements(\"announce\")\n .map(el => mountAnnounce(el)),\n\n /* Content */\n ...getComponentElements(\"content\")\n .map(el => mountContent(el, { viewport$, target$, print$ })),\n\n /* Search highlighting */\n ...getComponentElements(\"content\")\n .map(el => feature(\"search.highlight\")\n ? mountSearchHiglight(el, { index$, location$ })\n : EMPTY\n ),\n\n /* Header title */\n ...getComponentElements(\"header-title\")\n .map(el => mountHeaderTitle(el, { viewport$, header$ })),\n\n /* Sidebar */\n ...getComponentElements(\"sidebar\")\n .map(el => el.getAttribute(\"data-md-type\") === \"navigation\"\n ? at(screen$, () => mountSidebar(el, { viewport$, header$, main$ }))\n : at(tablet$, () => mountSidebar(el, { viewport$, header$, main$ }))\n ),\n\n /* Navigation tabs */\n ...getComponentElements(\"tabs\")\n .map(el => mountTabs(el, { viewport$, header$ })),\n\n /* Table of contents */\n ...getComponentElements(\"toc\")\n .map(el => mountTableOfContents(el, {\n viewport$, header$, main$, target$\n })),\n\n /* Back-to-top button */\n ...getComponentElements(\"top\")\n .map(el => mountBackToTop(el, { viewport$, header$, main$, target$ }))\n))\n\n/* Set up component observables */\nconst component$ = document$\n .pipe(\n switchMap(() => content$),\n mergeWith(control$),\n shareReplay(1)\n )\n\n/* Subscribe to all components */\ncomponent$.subscribe()\n\n/* ----------------------------------------------------------------------------\n * Exports\n * ------------------------------------------------------------------------- */\n\nwindow.document$ = document$ /* Document observable */\nwindow.location$ = location$ /* Location subject */\nwindow.target$ = target$ /* Location target observable */\nwindow.keyboard$ = keyboard$ /* Keyboard observable */\nwindow.viewport$ = viewport$ /* Viewport observable */\nwindow.tablet$ = tablet$ /* Media tablet observable */\nwindow.screen$ = screen$ /* Media screen observable */\nwindow.print$ = print$ /* Media print observable */\nwindow.alert$ = alert$ /* Alert subject */\nwindow.progress$ = progress$ /* Progress indicator subject */\nwindow.component$ = component$ /* Component observable */\n", "/*! *****************************************************************************\r\nCopyright (c) Microsoft Corporation.\r\n\r\nPermission to use, copy, modify, and/or distribute this software for any\r\npurpose with or without fee is hereby granted.\r\n\r\nTHE SOFTWARE IS PROVIDED \"AS IS\" AND THE AUTHOR DISCLAIMS ALL WARRANTIES WITH\r\nREGARD TO THIS SOFTWARE INCLUDING ALL IMPLIED WARRANTIES OF MERCHANTABILITY\r\nAND FITNESS. IN NO EVENT SHALL THE AUTHOR BE LIABLE FOR ANY SPECIAL, DIRECT,\r\nINDIRECT, OR CONSEQUENTIAL DAMAGES OR ANY DAMAGES WHATSOEVER RESULTING FROM\r\nLOSS OF USE, DATA OR PROFITS, WHETHER IN AN ACTION OF CONTRACT, NEGLIGENCE OR\r\nOTHER TORTIOUS ACTION, ARISING OUT OF OR IN CONNECTION WITH THE USE OR\r\nPERFORMANCE OF THIS SOFTWARE.\r\n***************************************************************************** */\r\n/* global Reflect, Promise */\r\n\r\nvar extendStatics = function(d, b) {\r\n extendStatics = Object.setPrototypeOf ||\r\n ({ __proto__: [] } instanceof Array && function (d, b) { d.__proto__ = b; }) ||\r\n function (d, b) { for (var p in b) if (Object.prototype.hasOwnProperty.call(b, p)) d[p] = b[p]; };\r\n return extendStatics(d, b);\r\n};\r\n\r\nexport function __extends(d, b) {\r\n if (typeof b !== \"function\" && b !== null)\r\n throw new TypeError(\"Class extends value \" + String(b) + \" is not a constructor or null\");\r\n extendStatics(d, b);\r\n function __() { this.constructor = d; }\r\n d.prototype = b === null ? Object.create(b) : (__.prototype = b.prototype, new __());\r\n}\r\n\r\nexport var __assign = function() {\r\n __assign = Object.assign || function __assign(t) {\r\n for (var s, i = 1, n = arguments.length; i < n; i++) {\r\n s = arguments[i];\r\n for (var p in s) if (Object.prototype.hasOwnProperty.call(s, p)) t[p] = s[p];\r\n }\r\n return t;\r\n }\r\n return __assign.apply(this, arguments);\r\n}\r\n\r\nexport function __rest(s, e) {\r\n var t = {};\r\n for (var p in s) if (Object.prototype.hasOwnProperty.call(s, p) && e.indexOf(p) < 0)\r\n t[p] = s[p];\r\n if (s != null && typeof Object.getOwnPropertySymbols === \"function\")\r\n for (var i = 0, p = Object.getOwnPropertySymbols(s); i < p.length; i++) {\r\n if (e.indexOf(p[i]) < 0 && Object.prototype.propertyIsEnumerable.call(s, p[i]))\r\n t[p[i]] = s[p[i]];\r\n }\r\n return t;\r\n}\r\n\r\nexport function __decorate(decorators, target, key, desc) {\r\n var c = arguments.length, r = c < 3 ? target : desc === null ? desc = Object.getOwnPropertyDescriptor(target, key) : desc, d;\r\n if (typeof Reflect === \"object\" && typeof Reflect.decorate === \"function\") r = Reflect.decorate(decorators, target, key, desc);\r\n else for (var i = decorators.length - 1; i >= 0; i--) if (d = decorators[i]) r = (c < 3 ? d(r) : c > 3 ? d(target, key, r) : d(target, key)) || r;\r\n return c > 3 && r && Object.defineProperty(target, key, r), r;\r\n}\r\n\r\nexport function __param(paramIndex, decorator) {\r\n return function (target, key) { decorator(target, key, paramIndex); }\r\n}\r\n\r\nexport function __metadata(metadataKey, metadataValue) {\r\n if (typeof Reflect === \"object\" && typeof Reflect.metadata === \"function\") return Reflect.metadata(metadataKey, metadataValue);\r\n}\r\n\r\nexport function __awaiter(thisArg, _arguments, P, generator) {\r\n function adopt(value) { return value instanceof P ? value : new P(function (resolve) { resolve(value); }); }\r\n return new (P || (P = Promise))(function (resolve, reject) {\r\n function fulfilled(value) { try { step(generator.next(value)); } catch (e) { reject(e); } }\r\n function rejected(value) { try { step(generator[\"throw\"](value)); } catch (e) { reject(e); } }\r\n function step(result) { result.done ? resolve(result.value) : adopt(result.value).then(fulfilled, rejected); }\r\n step((generator = generator.apply(thisArg, _arguments || [])).next());\r\n });\r\n}\r\n\r\nexport function __generator(thisArg, body) {\r\n var _ = { label: 0, sent: function() { if (t[0] & 1) throw t[1]; return t[1]; }, trys: [], ops: [] }, f, y, t, g;\r\n return g = { next: verb(0), \"throw\": verb(1), \"return\": verb(2) }, typeof Symbol === \"function\" && (g[Symbol.iterator] = function() { return this; }), g;\r\n function verb(n) { return function (v) { return step([n, v]); }; }\r\n function step(op) {\r\n if (f) throw new TypeError(\"Generator is already executing.\");\r\n while (_) try {\r\n if (f = 1, y && (t = op[0] & 2 ? y[\"return\"] : op[0] ? y[\"throw\"] || ((t = y[\"return\"]) && t.call(y), 0) : y.next) && !(t = t.call(y, op[1])).done) return t;\r\n if (y = 0, t) op = [op[0] & 2, t.value];\r\n switch (op[0]) {\r\n case 0: case 1: t = op; break;\r\n case 4: _.label++; return { value: op[1], done: false };\r\n case 5: _.label++; y = op[1]; op = [0]; continue;\r\n case 7: op = _.ops.pop(); _.trys.pop(); continue;\r\n default:\r\n if (!(t = _.trys, t = t.length > 0 && t[t.length - 1]) && (op[0] === 6 || op[0] === 2)) { _ = 0; continue; }\r\n if (op[0] === 3 && (!t || (op[1] > t[0] && op[1] < t[3]))) { _.label = op[1]; break; }\r\n if (op[0] === 6 && _.label < t[1]) { _.label = t[1]; t = op; break; }\r\n if (t && _.label < t[2]) { _.label = t[2]; _.ops.push(op); break; }\r\n if (t[2]) _.ops.pop();\r\n _.trys.pop(); continue;\r\n }\r\n op = body.call(thisArg, _);\r\n } catch (e) { op = [6, e]; y = 0; } finally { f = t = 0; }\r\n if (op[0] & 5) throw op[1]; return { value: op[0] ? op[1] : void 0, done: true };\r\n }\r\n}\r\n\r\nexport var __createBinding = Object.create ? (function(o, m, k, k2) {\r\n if (k2 === undefined) k2 = k;\r\n Object.defineProperty(o, k2, { enumerable: true, get: function() { return m[k]; } });\r\n}) : (function(o, m, k, k2) {\r\n if (k2 === undefined) k2 = k;\r\n o[k2] = m[k];\r\n});\r\n\r\nexport function __exportStar(m, o) {\r\n for (var p in m) if (p !== \"default\" && !Object.prototype.hasOwnProperty.call(o, p)) __createBinding(o, m, p);\r\n}\r\n\r\nexport function __values(o) {\r\n var s = typeof Symbol === \"function\" && Symbol.iterator, m = s && o[s], i = 0;\r\n if (m) return m.call(o);\r\n if (o && typeof o.length === \"number\") return {\r\n next: function () {\r\n if (o && i >= o.length) o = void 0;\r\n return { value: o && o[i++], done: !o };\r\n }\r\n };\r\n throw new TypeError(s ? \"Object is not iterable.\" : \"Symbol.iterator is not defined.\");\r\n}\r\n\r\nexport function __read(o, n) {\r\n var m = typeof Symbol === \"function\" && o[Symbol.iterator];\r\n if (!m) return o;\r\n var i = m.call(o), r, ar = [], e;\r\n try {\r\n while ((n === void 0 || n-- > 0) && !(r = i.next()).done) ar.push(r.value);\r\n }\r\n catch (error) { e = { error: error }; }\r\n finally {\r\n try {\r\n if (r && !r.done && (m = i[\"return\"])) m.call(i);\r\n }\r\n finally { if (e) throw e.error; }\r\n }\r\n return ar;\r\n}\r\n\r\n/** @deprecated */\r\nexport function __spread() {\r\n for (var ar = [], i = 0; i < arguments.length; i++)\r\n ar = ar.concat(__read(arguments[i]));\r\n return ar;\r\n}\r\n\r\n/** @deprecated */\r\nexport function __spreadArrays() {\r\n for (var s = 0, i = 0, il = arguments.length; i < il; i++) s += arguments[i].length;\r\n for (var r = Array(s), k = 0, i = 0; i < il; i++)\r\n for (var a = arguments[i], j = 0, jl = a.length; j < jl; j++, k++)\r\n r[k] = a[j];\r\n return r;\r\n}\r\n\r\nexport function __spreadArray(to, from, pack) {\r\n if (pack || arguments.length === 2) for (var i = 0, l = from.length, ar; i < l; i++) {\r\n if (ar || !(i in from)) {\r\n if (!ar) ar = Array.prototype.slice.call(from, 0, i);\r\n ar[i] = from[i];\r\n }\r\n }\r\n return to.concat(ar || Array.prototype.slice.call(from));\r\n}\r\n\r\nexport function __await(v) {\r\n return this instanceof __await ? (this.v = v, this) : new __await(v);\r\n}\r\n\r\nexport function __asyncGenerator(thisArg, _arguments, generator) {\r\n if (!Symbol.asyncIterator) throw new TypeError(\"Symbol.asyncIterator is not defined.\");\r\n var g = generator.apply(thisArg, _arguments || []), i, q = [];\r\n return i = {}, verb(\"next\"), verb(\"throw\"), verb(\"return\"), i[Symbol.asyncIterator] = function () { return this; }, i;\r\n function verb(n) { if (g[n]) i[n] = function (v) { return new Promise(function (a, b) { q.push([n, v, a, b]) > 1 || resume(n, v); }); }; }\r\n function resume(n, v) { try { step(g[n](v)); } catch (e) { settle(q[0][3], e); } }\r\n function step(r) { r.value instanceof __await ? Promise.resolve(r.value.v).then(fulfill, reject) : settle(q[0][2], r); }\r\n function fulfill(value) { resume(\"next\", value); }\r\n function reject(value) { resume(\"throw\", value); }\r\n function settle(f, v) { if (f(v), q.shift(), q.length) resume(q[0][0], q[0][1]); }\r\n}\r\n\r\nexport function __asyncDelegator(o) {\r\n var i, p;\r\n return i = {}, verb(\"next\"), verb(\"throw\", function (e) { throw e; }), verb(\"return\"), i[Symbol.iterator] = function () { return this; }, i;\r\n function verb(n, f) { i[n] = o[n] ? function (v) { return (p = !p) ? { value: __await(o[n](v)), done: n === \"return\" } : f ? f(v) : v; } : f; }\r\n}\r\n\r\nexport function __asyncValues(o) {\r\n if (!Symbol.asyncIterator) throw new TypeError(\"Symbol.asyncIterator is not defined.\");\r\n var m = o[Symbol.asyncIterator], i;\r\n return m ? m.call(o) : (o = typeof __values === \"function\" ? __values(o) : o[Symbol.iterator](), i = {}, verb(\"next\"), verb(\"throw\"), verb(\"return\"), i[Symbol.asyncIterator] = function () { return this; }, i);\r\n function verb(n) { i[n] = o[n] && function (v) { return new Promise(function (resolve, reject) { v = o[n](v), settle(resolve, reject, v.done, v.value); }); }; }\r\n function settle(resolve, reject, d, v) { Promise.resolve(v).then(function(v) { resolve({ value: v, done: d }); }, reject); }\r\n}\r\n\r\nexport function __makeTemplateObject(cooked, raw) {\r\n if (Object.defineProperty) { Object.defineProperty(cooked, \"raw\", { value: raw }); } else { cooked.raw = raw; }\r\n return cooked;\r\n};\r\n\r\nvar __setModuleDefault = Object.create ? (function(o, v) {\r\n Object.defineProperty(o, \"default\", { enumerable: true, value: v });\r\n}) : function(o, v) {\r\n o[\"default\"] = v;\r\n};\r\n\r\nexport function __importStar(mod) {\r\n if (mod && mod.__esModule) return mod;\r\n var result = {};\r\n if (mod != null) for (var k in mod) if (k !== \"default\" && Object.prototype.hasOwnProperty.call(mod, k)) __createBinding(result, mod, k);\r\n __setModuleDefault(result, mod);\r\n return result;\r\n}\r\n\r\nexport function __importDefault(mod) {\r\n return (mod && mod.__esModule) ? mod : { default: mod };\r\n}\r\n\r\nexport function __classPrivateFieldGet(receiver, state, kind, f) {\r\n if (kind === \"a\" && !f) throw new TypeError(\"Private accessor was defined without a getter\");\r\n if (typeof state === \"function\" ? receiver !== state || !f : !state.has(receiver)) throw new TypeError(\"Cannot read private member from an object whose class did not declare it\");\r\n return kind === \"m\" ? f : kind === \"a\" ? f.call(receiver) : f ? f.value : state.get(receiver);\r\n}\r\n\r\nexport function __classPrivateFieldSet(receiver, state, value, kind, f) {\r\n if (kind === \"m\") throw new TypeError(\"Private method is not writable\");\r\n if (kind === \"a\" && !f) throw new TypeError(\"Private accessor was defined without a setter\");\r\n if (typeof state === \"function\" ? receiver !== state || !f : !state.has(receiver)) throw new TypeError(\"Cannot write private member to an object whose class did not declare it\");\r\n return (kind === \"a\" ? f.call(receiver, value) : f ? f.value = value : state.set(receiver, value)), value;\r\n}\r\n", "/**\n * Returns true if the object is a function.\n * @param value The value to check\n */\nexport function isFunction(value: any): value is (...args: any[]) => any {\n return typeof value === 'function';\n}\n", "/**\n * Used to create Error subclasses until the community moves away from ES5.\n *\n * This is because compiling from TypeScript down to ES5 has issues with subclassing Errors\n * as well as other built-in types: https://github.com/Microsoft/TypeScript/issues/12123\n *\n * @param createImpl A factory function to create the actual constructor implementation. The returned\n * function should be a named function that calls `_super` internally.\n */\nexport function createErrorClass(createImpl: (_super: any) => any): T {\n const _super = (instance: any) => {\n Error.call(instance);\n instance.stack = new Error().stack;\n };\n\n const ctorFunc = createImpl(_super);\n ctorFunc.prototype = Object.create(Error.prototype);\n ctorFunc.prototype.constructor = ctorFunc;\n return ctorFunc;\n}\n", "import { createErrorClass } from './createErrorClass';\n\nexport interface UnsubscriptionError extends Error {\n readonly errors: any[];\n}\n\nexport interface UnsubscriptionErrorCtor {\n /**\n * @deprecated Internal implementation detail. Do not construct error instances.\n * Cannot be tagged as internal: https://github.com/ReactiveX/rxjs/issues/6269\n */\n new (errors: any[]): UnsubscriptionError;\n}\n\n/**\n * An error thrown when one or more errors have occurred during the\n * `unsubscribe` of a {@link Subscription}.\n */\nexport const UnsubscriptionError: UnsubscriptionErrorCtor = createErrorClass(\n (_super) =>\n function UnsubscriptionErrorImpl(this: any, errors: (Error | string)[]) {\n _super(this);\n this.message = errors\n ? `${errors.length} errors occurred during unsubscription:\n${errors.map((err, i) => `${i + 1}) ${err.toString()}`).join('\\n ')}`\n : '';\n this.name = 'UnsubscriptionError';\n this.errors = errors;\n }\n);\n", "/**\n * Removes an item from an array, mutating it.\n * @param arr The array to remove the item from\n * @param item The item to remove\n */\nexport function arrRemove(arr: T[] | undefined | null, item: T) {\n if (arr) {\n const index = arr.indexOf(item);\n 0 <= index && arr.splice(index, 1);\n }\n}\n", "import { isFunction } from './util/isFunction';\nimport { UnsubscriptionError } from './util/UnsubscriptionError';\nimport { SubscriptionLike, TeardownLogic, Unsubscribable } from './types';\nimport { arrRemove } from './util/arrRemove';\n\n/**\n * Represents a disposable resource, such as the execution of an Observable. A\n * Subscription has one important method, `unsubscribe`, that takes no argument\n * and just disposes the resource held by the subscription.\n *\n * Additionally, subscriptions may be grouped together through the `add()`\n * method, which will attach a child Subscription to the current Subscription.\n * When a Subscription is unsubscribed, all its children (and its grandchildren)\n * will be unsubscribed as well.\n *\n * @class Subscription\n */\nexport class Subscription implements SubscriptionLike {\n /** @nocollapse */\n public static EMPTY = (() => {\n const empty = new Subscription();\n empty.closed = true;\n return empty;\n })();\n\n /**\n * A flag to indicate whether this Subscription has already been unsubscribed.\n */\n public closed = false;\n\n private _parentage: Subscription[] | Subscription | null = null;\n\n /**\n * The list of registered finalizers to execute upon unsubscription. Adding and removing from this\n * list occurs in the {@link #add} and {@link #remove} methods.\n */\n private _finalizers: Exclude[] | null = null;\n\n /**\n * @param initialTeardown A function executed first as part of the finalization\n * process that is kicked off when {@link #unsubscribe} is called.\n */\n constructor(private initialTeardown?: () => void) {}\n\n /**\n * Disposes the resources held by the subscription. May, for instance, cancel\n * an ongoing Observable execution or cancel any other type of work that\n * started when the Subscription was created.\n * @return {void}\n */\n unsubscribe(): void {\n let errors: any[] | undefined;\n\n if (!this.closed) {\n this.closed = true;\n\n // Remove this from it's parents.\n const { _parentage } = this;\n if (_parentage) {\n this._parentage = null;\n if (Array.isArray(_parentage)) {\n for (const parent of _parentage) {\n parent.remove(this);\n }\n } else {\n _parentage.remove(this);\n }\n }\n\n const { initialTeardown: initialFinalizer } = this;\n if (isFunction(initialFinalizer)) {\n try {\n initialFinalizer();\n } catch (e) {\n errors = e instanceof UnsubscriptionError ? e.errors : [e];\n }\n }\n\n const { _finalizers } = this;\n if (_finalizers) {\n this._finalizers = null;\n for (const finalizer of _finalizers) {\n try {\n execFinalizer(finalizer);\n } catch (err) {\n errors = errors ?? [];\n if (err instanceof UnsubscriptionError) {\n errors = [...errors, ...err.errors];\n } else {\n errors.push(err);\n }\n }\n }\n }\n\n if (errors) {\n throw new UnsubscriptionError(errors);\n }\n }\n }\n\n /**\n * Adds a finalizer to this subscription, so that finalization will be unsubscribed/called\n * when this subscription is unsubscribed. If this subscription is already {@link #closed},\n * because it has already been unsubscribed, then whatever finalizer is passed to it\n * will automatically be executed (unless the finalizer itself is also a closed subscription).\n *\n * Closed Subscriptions cannot be added as finalizers to any subscription. Adding a closed\n * subscription to a any subscription will result in no operation. (A noop).\n *\n * Adding a subscription to itself, or adding `null` or `undefined` will not perform any\n * operation at all. (A noop).\n *\n * `Subscription` instances that are added to this instance will automatically remove themselves\n * if they are unsubscribed. Functions and {@link Unsubscribable} objects that you wish to remove\n * will need to be removed manually with {@link #remove}\n *\n * @param teardown The finalization logic to add to this subscription.\n */\n add(teardown: TeardownLogic): void {\n // Only add the finalizer if it's not undefined\n // and don't add a subscription to itself.\n if (teardown && teardown !== this) {\n if (this.closed) {\n // If this subscription is already closed,\n // execute whatever finalizer is handed to it automatically.\n execFinalizer(teardown);\n } else {\n if (teardown instanceof Subscription) {\n // We don't add closed subscriptions, and we don't add the same subscription\n // twice. Subscription unsubscribe is idempotent.\n if (teardown.closed || teardown._hasParent(this)) {\n return;\n }\n teardown._addParent(this);\n }\n (this._finalizers = this._finalizers ?? []).push(teardown);\n }\n }\n }\n\n /**\n * Checks to see if a this subscription already has a particular parent.\n * This will signal that this subscription has already been added to the parent in question.\n * @param parent the parent to check for\n */\n private _hasParent(parent: Subscription) {\n const { _parentage } = this;\n return _parentage === parent || (Array.isArray(_parentage) && _parentage.includes(parent));\n }\n\n /**\n * Adds a parent to this subscription so it can be removed from the parent if it\n * unsubscribes on it's own.\n *\n * NOTE: THIS ASSUMES THAT {@link _hasParent} HAS ALREADY BEEN CHECKED.\n * @param parent The parent subscription to add\n */\n private _addParent(parent: Subscription) {\n const { _parentage } = this;\n this._parentage = Array.isArray(_parentage) ? (_parentage.push(parent), _parentage) : _parentage ? [_parentage, parent] : parent;\n }\n\n /**\n * Called on a child when it is removed via {@link #remove}.\n * @param parent The parent to remove\n */\n private _removeParent(parent: Subscription) {\n const { _parentage } = this;\n if (_parentage === parent) {\n this._parentage = null;\n } else if (Array.isArray(_parentage)) {\n arrRemove(_parentage, parent);\n }\n }\n\n /**\n * Removes a finalizer from this subscription that was previously added with the {@link #add} method.\n *\n * Note that `Subscription` instances, when unsubscribed, will automatically remove themselves\n * from every other `Subscription` they have been added to. This means that using the `remove` method\n * is not a common thing and should be used thoughtfully.\n *\n * If you add the same finalizer instance of a function or an unsubscribable object to a `Subscription` instance\n * more than once, you will need to call `remove` the same number of times to remove all instances.\n *\n * All finalizer instances are removed to free up memory upon unsubscription.\n *\n * @param teardown The finalizer to remove from this subscription\n */\n remove(teardown: Exclude): void {\n const { _finalizers } = this;\n _finalizers && arrRemove(_finalizers, teardown);\n\n if (teardown instanceof Subscription) {\n teardown._removeParent(this);\n }\n }\n}\n\nexport const EMPTY_SUBSCRIPTION = Subscription.EMPTY;\n\nexport function isSubscription(value: any): value is Subscription {\n return (\n value instanceof Subscription ||\n (value && 'closed' in value && isFunction(value.remove) && isFunction(value.add) && isFunction(value.unsubscribe))\n );\n}\n\nfunction execFinalizer(finalizer: Unsubscribable | (() => void)) {\n if (isFunction(finalizer)) {\n finalizer();\n } else {\n finalizer.unsubscribe();\n }\n}\n", "import { Subscriber } from './Subscriber';\nimport { ObservableNotification } from './types';\n\n/**\n * The {@link GlobalConfig} object for RxJS. It is used to configure things\n * like how to react on unhandled errors.\n */\nexport const config: GlobalConfig = {\n onUnhandledError: null,\n onStoppedNotification: null,\n Promise: undefined,\n useDeprecatedSynchronousErrorHandling: false,\n useDeprecatedNextContext: false,\n};\n\n/**\n * The global configuration object for RxJS, used to configure things\n * like how to react on unhandled errors. Accessible via {@link config}\n * object.\n */\nexport interface GlobalConfig {\n /**\n * A registration point for unhandled errors from RxJS. These are errors that\n * cannot were not handled by consuming code in the usual subscription path. For\n * example, if you have this configured, and you subscribe to an observable without\n * providing an error handler, errors from that subscription will end up here. This\n * will _always_ be called asynchronously on another job in the runtime. This is because\n * we do not want errors thrown in this user-configured handler to interfere with the\n * behavior of the library.\n */\n onUnhandledError: ((err: any) => void) | null;\n\n /**\n * A registration point for notifications that cannot be sent to subscribers because they\n * have completed, errored or have been explicitly unsubscribed. By default, next, complete\n * and error notifications sent to stopped subscribers are noops. However, sometimes callers\n * might want a different behavior. For example, with sources that attempt to report errors\n * to stopped subscribers, a caller can configure RxJS to throw an unhandled error instead.\n * This will _always_ be called asynchronously on another job in the runtime. This is because\n * we do not want errors thrown in this user-configured handler to interfere with the\n * behavior of the library.\n */\n onStoppedNotification: ((notification: ObservableNotification, subscriber: Subscriber) => void) | null;\n\n /**\n * The promise constructor used by default for {@link Observable#toPromise toPromise} and {@link Observable#forEach forEach}\n * methods.\n *\n * @deprecated As of version 8, RxJS will no longer support this sort of injection of a\n * Promise constructor. If you need a Promise implementation other than native promises,\n * please polyfill/patch Promise as you see appropriate. Will be removed in v8.\n */\n Promise?: PromiseConstructorLike;\n\n /**\n * If true, turns on synchronous error rethrowing, which is a deprecated behavior\n * in v6 and higher. This behavior enables bad patterns like wrapping a subscribe\n * call in a try/catch block. It also enables producer interference, a nasty bug\n * where a multicast can be broken for all observers by a downstream consumer with\n * an unhandled error. DO NOT USE THIS FLAG UNLESS IT'S NEEDED TO BUY TIME\n * FOR MIGRATION REASONS.\n *\n * @deprecated As of version 8, RxJS will no longer support synchronous throwing\n * of unhandled errors. All errors will be thrown on a separate call stack to prevent bad\n * behaviors described above. Will be removed in v8.\n */\n useDeprecatedSynchronousErrorHandling: boolean;\n\n /**\n * If true, enables an as-of-yet undocumented feature from v5: The ability to access\n * `unsubscribe()` via `this` context in `next` functions created in observers passed\n * to `subscribe`.\n *\n * This is being removed because the performance was severely problematic, and it could also cause\n * issues when types other than POJOs are passed to subscribe as subscribers, as they will likely have\n * their `this` context overwritten.\n *\n * @deprecated As of version 8, RxJS will no longer support altering the\n * context of next functions provided as part of an observer to Subscribe. Instead,\n * you will have access to a subscription or a signal or token that will allow you to do things like\n * unsubscribe and test closed status. Will be removed in v8.\n */\n useDeprecatedNextContext: boolean;\n}\n", "import type { TimerHandle } from './timerHandle';\ntype SetTimeoutFunction = (handler: () => void, timeout?: number, ...args: any[]) => TimerHandle;\ntype ClearTimeoutFunction = (handle: TimerHandle) => void;\n\ninterface TimeoutProvider {\n setTimeout: SetTimeoutFunction;\n clearTimeout: ClearTimeoutFunction;\n delegate:\n | {\n setTimeout: SetTimeoutFunction;\n clearTimeout: ClearTimeoutFunction;\n }\n | undefined;\n}\n\nexport const timeoutProvider: TimeoutProvider = {\n // When accessing the delegate, use the variable rather than `this` so that\n // the functions can be called without being bound to the provider.\n setTimeout(handler: () => void, timeout?: number, ...args) {\n const { delegate } = timeoutProvider;\n if (delegate?.setTimeout) {\n return delegate.setTimeout(handler, timeout, ...args);\n }\n return setTimeout(handler, timeout, ...args);\n },\n clearTimeout(handle) {\n const { delegate } = timeoutProvider;\n return (delegate?.clearTimeout || clearTimeout)(handle as any);\n },\n delegate: undefined,\n};\n", "import { config } from '../config';\nimport { timeoutProvider } from '../scheduler/timeoutProvider';\n\n/**\n * Handles an error on another job either with the user-configured {@link onUnhandledError},\n * or by throwing it on that new job so it can be picked up by `window.onerror`, `process.on('error')`, etc.\n *\n * This should be called whenever there is an error that is out-of-band with the subscription\n * or when an error hits a terminal boundary of the subscription and no error handler was provided.\n *\n * @param err the error to report\n */\nexport function reportUnhandledError(err: any) {\n timeoutProvider.setTimeout(() => {\n const { onUnhandledError } = config;\n if (onUnhandledError) {\n // Execute the user-configured error handler.\n onUnhandledError(err);\n } else {\n // Throw so it is picked up by the runtime's uncaught error mechanism.\n throw err;\n }\n });\n}\n", "/* tslint:disable:no-empty */\nexport function noop() { }\n", "import { CompleteNotification, NextNotification, ErrorNotification } from './types';\n\n/**\n * A completion object optimized for memory use and created to be the\n * same \"shape\" as other notifications in v8.\n * @internal\n */\nexport const COMPLETE_NOTIFICATION = (() => createNotification('C', undefined, undefined) as CompleteNotification)();\n\n/**\n * Internal use only. Creates an optimized error notification that is the same \"shape\"\n * as other notifications.\n * @internal\n */\nexport function errorNotification(error: any): ErrorNotification {\n return createNotification('E', undefined, error) as any;\n}\n\n/**\n * Internal use only. Creates an optimized next notification that is the same \"shape\"\n * as other notifications.\n * @internal\n */\nexport function nextNotification(value: T) {\n return createNotification('N', value, undefined) as NextNotification;\n}\n\n/**\n * Ensures that all notifications created internally have the same \"shape\" in v8.\n *\n * TODO: This is only exported to support a crazy legacy test in `groupBy`.\n * @internal\n */\nexport function createNotification(kind: 'N' | 'E' | 'C', value: any, error: any) {\n return {\n kind,\n value,\n error,\n };\n}\n", "import { config } from '../config';\n\nlet context: { errorThrown: boolean; error: any } | null = null;\n\n/**\n * Handles dealing with errors for super-gross mode. Creates a context, in which\n * any synchronously thrown errors will be passed to {@link captureError}. Which\n * will record the error such that it will be rethrown after the call back is complete.\n * TODO: Remove in v8\n * @param cb An immediately executed function.\n */\nexport function errorContext(cb: () => void) {\n if (config.useDeprecatedSynchronousErrorHandling) {\n const isRoot = !context;\n if (isRoot) {\n context = { errorThrown: false, error: null };\n }\n cb();\n if (isRoot) {\n const { errorThrown, error } = context!;\n context = null;\n if (errorThrown) {\n throw error;\n }\n }\n } else {\n // This is the general non-deprecated path for everyone that\n // isn't crazy enough to use super-gross mode (useDeprecatedSynchronousErrorHandling)\n cb();\n }\n}\n\n/**\n * Captures errors only in super-gross mode.\n * @param err the error to capture\n */\nexport function captureError(err: any) {\n if (config.useDeprecatedSynchronousErrorHandling && context) {\n context.errorThrown = true;\n context.error = err;\n }\n}\n", "import { isFunction } from './util/isFunction';\nimport { Observer, ObservableNotification } from './types';\nimport { isSubscription, Subscription } from './Subscription';\nimport { config } from './config';\nimport { reportUnhandledError } from './util/reportUnhandledError';\nimport { noop } from './util/noop';\nimport { nextNotification, errorNotification, COMPLETE_NOTIFICATION } from './NotificationFactories';\nimport { timeoutProvider } from './scheduler/timeoutProvider';\nimport { captureError } from './util/errorContext';\n\n/**\n * Implements the {@link Observer} interface and extends the\n * {@link Subscription} class. While the {@link Observer} is the public API for\n * consuming the values of an {@link Observable}, all Observers get converted to\n * a Subscriber, in order to provide Subscription-like capabilities such as\n * `unsubscribe`. Subscriber is a common type in RxJS, and crucial for\n * implementing operators, but it is rarely used as a public API.\n *\n * @class Subscriber\n */\nexport class Subscriber extends Subscription implements Observer {\n /**\n * A static factory for a Subscriber, given a (potentially partial) definition\n * of an Observer.\n * @param next The `next` callback of an Observer.\n * @param error The `error` callback of an\n * Observer.\n * @param complete The `complete` callback of an\n * Observer.\n * @return A Subscriber wrapping the (partially defined)\n * Observer represented by the given arguments.\n * @nocollapse\n * @deprecated Do not use. Will be removed in v8. There is no replacement for this\n * method, and there is no reason to be creating instances of `Subscriber` directly.\n * If you have a specific use case, please file an issue.\n */\n static create(next?: (x?: T) => void, error?: (e?: any) => void, complete?: () => void): Subscriber {\n return new SafeSubscriber(next, error, complete);\n }\n\n /** @deprecated Internal implementation detail, do not use directly. Will be made internal in v8. */\n protected isStopped: boolean = false;\n /** @deprecated Internal implementation detail, do not use directly. Will be made internal in v8. */\n protected destination: Subscriber | Observer; // this `any` is the escape hatch to erase extra type param (e.g. R)\n\n /**\n * @deprecated Internal implementation detail, do not use directly. Will be made internal in v8.\n * There is no reason to directly create an instance of Subscriber. This type is exported for typings reasons.\n */\n constructor(destination?: Subscriber | Observer) {\n super();\n if (destination) {\n this.destination = destination;\n // Automatically chain subscriptions together here.\n // if destination is a Subscription, then it is a Subscriber.\n if (isSubscription(destination)) {\n destination.add(this);\n }\n } else {\n this.destination = EMPTY_OBSERVER;\n }\n }\n\n /**\n * The {@link Observer} callback to receive notifications of type `next` from\n * the Observable, with a value. The Observable may call this method 0 or more\n * times.\n * @param {T} [value] The `next` value.\n * @return {void}\n */\n next(value?: T): void {\n if (this.isStopped) {\n handleStoppedNotification(nextNotification(value), this);\n } else {\n this._next(value!);\n }\n }\n\n /**\n * The {@link Observer} callback to receive notifications of type `error` from\n * the Observable, with an attached `Error`. Notifies the Observer that\n * the Observable has experienced an error condition.\n * @param {any} [err] The `error` exception.\n * @return {void}\n */\n error(err?: any): void {\n if (this.isStopped) {\n handleStoppedNotification(errorNotification(err), this);\n } else {\n this.isStopped = true;\n this._error(err);\n }\n }\n\n /**\n * The {@link Observer} callback to receive a valueless notification of type\n * `complete` from the Observable. Notifies the Observer that the Observable\n * has finished sending push-based notifications.\n * @return {void}\n */\n complete(): void {\n if (this.isStopped) {\n handleStoppedNotification(COMPLETE_NOTIFICATION, this);\n } else {\n this.isStopped = true;\n this._complete();\n }\n }\n\n unsubscribe(): void {\n if (!this.closed) {\n this.isStopped = true;\n super.unsubscribe();\n this.destination = null!;\n }\n }\n\n protected _next(value: T): void {\n this.destination.next(value);\n }\n\n protected _error(err: any): void {\n try {\n this.destination.error(err);\n } finally {\n this.unsubscribe();\n }\n }\n\n protected _complete(): void {\n try {\n this.destination.complete();\n } finally {\n this.unsubscribe();\n }\n }\n}\n\n/**\n * This bind is captured here because we want to be able to have\n * compatibility with monoid libraries that tend to use a method named\n * `bind`. In particular, a library called Monio requires this.\n */\nconst _bind = Function.prototype.bind;\n\nfunction bind any>(fn: Fn, thisArg: any): Fn {\n return _bind.call(fn, thisArg);\n}\n\n/**\n * Internal optimization only, DO NOT EXPOSE.\n * @internal\n */\nclass ConsumerObserver implements Observer {\n constructor(private partialObserver: Partial>) {}\n\n next(value: T): void {\n const { partialObserver } = this;\n if (partialObserver.next) {\n try {\n partialObserver.next(value);\n } catch (error) {\n handleUnhandledError(error);\n }\n }\n }\n\n error(err: any): void {\n const { partialObserver } = this;\n if (partialObserver.error) {\n try {\n partialObserver.error(err);\n } catch (error) {\n handleUnhandledError(error);\n }\n } else {\n handleUnhandledError(err);\n }\n }\n\n complete(): void {\n const { partialObserver } = this;\n if (partialObserver.complete) {\n try {\n partialObserver.complete();\n } catch (error) {\n handleUnhandledError(error);\n }\n }\n }\n}\n\nexport class SafeSubscriber extends Subscriber {\n constructor(\n observerOrNext?: Partial> | ((value: T) => void) | null,\n error?: ((e?: any) => void) | null,\n complete?: (() => void) | null\n ) {\n super();\n\n let partialObserver: Partial>;\n if (isFunction(observerOrNext) || !observerOrNext) {\n // The first argument is a function, not an observer. The next\n // two arguments *could* be observers, or they could be empty.\n partialObserver = {\n next: (observerOrNext ?? undefined) as (((value: T) => void) | undefined),\n error: error ?? undefined,\n complete: complete ?? undefined,\n };\n } else {\n // The first argument is a partial observer.\n let context: any;\n if (this && config.useDeprecatedNextContext) {\n // This is a deprecated path that made `this.unsubscribe()` available in\n // next handler functions passed to subscribe. This only exists behind a flag\n // now, as it is *very* slow.\n context = Object.create(observerOrNext);\n context.unsubscribe = () => this.unsubscribe();\n partialObserver = {\n next: observerOrNext.next && bind(observerOrNext.next, context),\n error: observerOrNext.error && bind(observerOrNext.error, context),\n complete: observerOrNext.complete && bind(observerOrNext.complete, context),\n };\n } else {\n // The \"normal\" path. Just use the partial observer directly.\n partialObserver = observerOrNext;\n }\n }\n\n // Wrap the partial observer to ensure it's a full observer, and\n // make sure proper error handling is accounted for.\n this.destination = new ConsumerObserver(partialObserver);\n }\n}\n\nfunction handleUnhandledError(error: any) {\n if (config.useDeprecatedSynchronousErrorHandling) {\n captureError(error);\n } else {\n // Ideal path, we report this as an unhandled error,\n // which is thrown on a new call stack.\n reportUnhandledError(error);\n }\n}\n\n/**\n * An error handler used when no error handler was supplied\n * to the SafeSubscriber -- meaning no error handler was supplied\n * do the `subscribe` call on our observable.\n * @param err The error to handle\n */\nfunction defaultErrorHandler(err: any) {\n throw err;\n}\n\n/**\n * A handler for notifications that cannot be sent to a stopped subscriber.\n * @param notification The notification being sent\n * @param subscriber The stopped subscriber\n */\nfunction handleStoppedNotification(notification: ObservableNotification, subscriber: Subscriber) {\n const { onStoppedNotification } = config;\n onStoppedNotification && timeoutProvider.setTimeout(() => onStoppedNotification(notification, subscriber));\n}\n\n/**\n * The observer used as a stub for subscriptions where the user did not\n * pass any arguments to `subscribe`. Comes with the default error handling\n * behavior.\n */\nexport const EMPTY_OBSERVER: Readonly> & { closed: true } = {\n closed: true,\n next: noop,\n error: defaultErrorHandler,\n complete: noop,\n};\n", "/**\n * Symbol.observable or a string \"@@observable\". Used for interop\n *\n * @deprecated We will no longer be exporting this symbol in upcoming versions of RxJS.\n * Instead polyfill and use Symbol.observable directly *or* use https://www.npmjs.com/package/symbol-observable\n */\nexport const observable: string | symbol = (() => (typeof Symbol === 'function' && Symbol.observable) || '@@observable')();\n", "/**\n * This function takes one parameter and just returns it. Simply put,\n * this is like `(x: T): T => x`.\n *\n * ## Examples\n *\n * This is useful in some cases when using things like `mergeMap`\n *\n * ```ts\n * import { interval, take, map, range, mergeMap, identity } from 'rxjs';\n *\n * const source$ = interval(1000).pipe(take(5));\n *\n * const result$ = source$.pipe(\n * map(i => range(i)),\n * mergeMap(identity) // same as mergeMap(x => x)\n * );\n *\n * result$.subscribe({\n * next: console.log\n * });\n * ```\n *\n * Or when you want to selectively apply an operator\n *\n * ```ts\n * import { interval, take, identity } from 'rxjs';\n *\n * const shouldLimit = () => Math.random() < 0.5;\n *\n * const source$ = interval(1000);\n *\n * const result$ = source$.pipe(shouldLimit() ? take(5) : identity);\n *\n * result$.subscribe({\n * next: console.log\n * });\n * ```\n *\n * @param x Any value that is returned by this function\n * @returns The value passed as the first parameter to this function\n */\nexport function identity(x: T): T {\n return x;\n}\n", "import { identity } from './identity';\nimport { UnaryFunction } from '../types';\n\nexport function pipe(): typeof identity;\nexport function pipe(fn1: UnaryFunction): UnaryFunction;\nexport function pipe(fn1: UnaryFunction, fn2: UnaryFunction): UnaryFunction;\nexport function pipe(fn1: UnaryFunction, fn2: UnaryFunction, fn3: UnaryFunction): UnaryFunction;\nexport function pipe(\n fn1: UnaryFunction,\n fn2: UnaryFunction,\n fn3: UnaryFunction,\n fn4: UnaryFunction\n): UnaryFunction;\nexport function pipe(\n fn1: UnaryFunction,\n fn2: UnaryFunction,\n fn3: UnaryFunction,\n fn4: UnaryFunction,\n fn5: UnaryFunction\n): UnaryFunction;\nexport function pipe(\n fn1: UnaryFunction,\n fn2: UnaryFunction,\n fn3: UnaryFunction,\n fn4: UnaryFunction,\n fn5: UnaryFunction,\n fn6: UnaryFunction\n): UnaryFunction;\nexport function pipe(\n fn1: UnaryFunction,\n fn2: UnaryFunction,\n fn3: UnaryFunction,\n fn4: UnaryFunction,\n fn5: UnaryFunction,\n fn6: UnaryFunction,\n fn7: UnaryFunction\n): UnaryFunction;\nexport function pipe(\n fn1: UnaryFunction,\n fn2: UnaryFunction,\n fn3: UnaryFunction,\n fn4: UnaryFunction,\n fn5: UnaryFunction,\n fn6: UnaryFunction,\n fn7: UnaryFunction,\n fn8: UnaryFunction\n): UnaryFunction;\nexport function pipe(\n fn1: UnaryFunction,\n fn2: UnaryFunction,\n fn3: UnaryFunction,\n fn4: UnaryFunction,\n fn5: UnaryFunction,\n fn6: UnaryFunction,\n fn7: UnaryFunction,\n fn8: UnaryFunction,\n fn9: UnaryFunction\n): UnaryFunction;\nexport function pipe(\n fn1: UnaryFunction,\n fn2: UnaryFunction,\n fn3: UnaryFunction,\n fn4: UnaryFunction,\n fn5: UnaryFunction,\n fn6: UnaryFunction,\n fn7: UnaryFunction,\n fn8: UnaryFunction,\n fn9: UnaryFunction,\n ...fns: UnaryFunction[]\n): UnaryFunction;\n\n/**\n * pipe() can be called on one or more functions, each of which can take one argument (\"UnaryFunction\")\n * and uses it to return a value.\n * It returns a function that takes one argument, passes it to the first UnaryFunction, and then\n * passes the result to the next one, passes that result to the next one, and so on. \n */\nexport function pipe(...fns: Array>): UnaryFunction {\n return pipeFromArray(fns);\n}\n\n/** @internal */\nexport function pipeFromArray(fns: Array>): UnaryFunction {\n if (fns.length === 0) {\n return identity as UnaryFunction;\n }\n\n if (fns.length === 1) {\n return fns[0];\n }\n\n return function piped(input: T): R {\n return fns.reduce((prev: any, fn: UnaryFunction) => fn(prev), input as any);\n };\n}\n", "import { Operator } from './Operator';\nimport { SafeSubscriber, Subscriber } from './Subscriber';\nimport { isSubscription, Subscription } from './Subscription';\nimport { TeardownLogic, OperatorFunction, Subscribable, Observer } from './types';\nimport { observable as Symbol_observable } from './symbol/observable';\nimport { pipeFromArray } from './util/pipe';\nimport { config } from './config';\nimport { isFunction } from './util/isFunction';\nimport { errorContext } from './util/errorContext';\n\n/**\n * A representation of any set of values over any amount of time. This is the most basic building block\n * of RxJS.\n *\n * @class Observable\n */\nexport class Observable implements Subscribable {\n /**\n * @deprecated Internal implementation detail, do not use directly. Will be made internal in v8.\n */\n source: Observable | undefined;\n\n /**\n * @deprecated Internal implementation detail, do not use directly. Will be made internal in v8.\n */\n operator: Operator | undefined;\n\n /**\n * @constructor\n * @param {Function} subscribe the function that is called when the Observable is\n * initially subscribed to. This function is given a Subscriber, to which new values\n * can be `next`ed, or an `error` method can be called to raise an error, or\n * `complete` can be called to notify of a successful completion.\n */\n constructor(subscribe?: (this: Observable, subscriber: Subscriber) => TeardownLogic) {\n if (subscribe) {\n this._subscribe = subscribe;\n }\n }\n\n // HACK: Since TypeScript inherits static properties too, we have to\n // fight against TypeScript here so Subject can have a different static create signature\n /**\n * Creates a new Observable by calling the Observable constructor\n * @owner Observable\n * @method create\n * @param {Function} subscribe? the subscriber function to be passed to the Observable constructor\n * @return {Observable} a new observable\n * @nocollapse\n * @deprecated Use `new Observable()` instead. Will be removed in v8.\n */\n static create: (...args: any[]) => any = (subscribe?: (subscriber: Subscriber) => TeardownLogic) => {\n return new Observable(subscribe);\n };\n\n /**\n * Creates a new Observable, with this Observable instance as the source, and the passed\n * operator defined as the new observable's operator.\n * @method lift\n * @param operator the operator defining the operation to take on the observable\n * @return a new observable with the Operator applied\n * @deprecated Internal implementation detail, do not use directly. Will be made internal in v8.\n * If you have implemented an operator using `lift`, it is recommended that you create an\n * operator by simply returning `new Observable()` directly. See \"Creating new operators from\n * scratch\" section here: https://rxjs.dev/guide/operators\n */\n lift(operator?: Operator): Observable {\n const observable = new Observable();\n observable.source = this;\n observable.operator = operator;\n return observable;\n }\n\n subscribe(observerOrNext?: Partial> | ((value: T) => void)): Subscription;\n /** @deprecated Instead of passing separate callback arguments, use an observer argument. Signatures taking separate callback arguments will be removed in v8. Details: https://rxjs.dev/deprecations/subscribe-arguments */\n subscribe(next?: ((value: T) => void) | null, error?: ((error: any) => void) | null, complete?: (() => void) | null): Subscription;\n /**\n * Invokes an execution of an Observable and registers Observer handlers for notifications it will emit.\n *\n * Use it when you have all these Observables, but still nothing is happening.\n *\n * `subscribe` is not a regular operator, but a method that calls Observable's internal `subscribe` function. It\n * might be for example a function that you passed to Observable's constructor, but most of the time it is\n * a library implementation, which defines what will be emitted by an Observable, and when it be will emitted. This means\n * that calling `subscribe` is actually the moment when Observable starts its work, not when it is created, as it is often\n * the thought.\n *\n * Apart from starting the execution of an Observable, this method allows you to listen for values\n * that an Observable emits, as well as for when it completes or errors. You can achieve this in two\n * of the following ways.\n *\n * The first way is creating an object that implements {@link Observer} interface. It should have methods\n * defined by that interface, but note that it should be just a regular JavaScript object, which you can create\n * yourself in any way you want (ES6 class, classic function constructor, object literal etc.). In particular, do\n * not attempt to use any RxJS implementation details to create Observers - you don't need them. Remember also\n * that your object does not have to implement all methods. If you find yourself creating a method that doesn't\n * do anything, you can simply omit it. Note however, if the `error` method is not provided and an error happens,\n * it will be thrown asynchronously. Errors thrown asynchronously cannot be caught using `try`/`catch`. Instead,\n * use the {@link onUnhandledError} configuration option or use a runtime handler (like `window.onerror` or\n * `process.on('error)`) to be notified of unhandled errors. Because of this, it's recommended that you provide\n * an `error` method to avoid missing thrown errors.\n *\n * The second way is to give up on Observer object altogether and simply provide callback functions in place of its methods.\n * This means you can provide three functions as arguments to `subscribe`, where the first function is equivalent\n * of a `next` method, the second of an `error` method and the third of a `complete` method. Just as in case of an Observer,\n * if you do not need to listen for something, you can omit a function by passing `undefined` or `null`,\n * since `subscribe` recognizes these functions by where they were placed in function call. When it comes\n * to the `error` function, as with an Observer, if not provided, errors emitted by an Observable will be thrown asynchronously.\n *\n * You can, however, subscribe with no parameters at all. This may be the case where you're not interested in terminal events\n * and you also handled emissions internally by using operators (e.g. using `tap`).\n *\n * Whichever style of calling `subscribe` you use, in both cases it returns a Subscription object.\n * This object allows you to call `unsubscribe` on it, which in turn will stop the work that an Observable does and will clean\n * up all resources that an Observable used. Note that cancelling a subscription will not call `complete` callback\n * provided to `subscribe` function, which is reserved for a regular completion signal that comes from an Observable.\n *\n * Remember that callbacks provided to `subscribe` are not guaranteed to be called asynchronously.\n * It is an Observable itself that decides when these functions will be called. For example {@link of}\n * by default emits all its values synchronously. Always check documentation for how given Observable\n * will behave when subscribed and if its default behavior can be modified with a `scheduler`.\n *\n * #### Examples\n *\n * Subscribe with an {@link guide/observer Observer}\n *\n * ```ts\n * import { of } from 'rxjs';\n *\n * const sumObserver = {\n * sum: 0,\n * next(value) {\n * console.log('Adding: ' + value);\n * this.sum = this.sum + value;\n * },\n * error() {\n * // We actually could just remove this method,\n * // since we do not really care about errors right now.\n * },\n * complete() {\n * console.log('Sum equals: ' + this.sum);\n * }\n * };\n *\n * of(1, 2, 3) // Synchronously emits 1, 2, 3 and then completes.\n * .subscribe(sumObserver);\n *\n * // Logs:\n * // 'Adding: 1'\n * // 'Adding: 2'\n * // 'Adding: 3'\n * // 'Sum equals: 6'\n * ```\n *\n * Subscribe with functions ({@link deprecations/subscribe-arguments deprecated})\n *\n * ```ts\n * import { of } from 'rxjs'\n *\n * let sum = 0;\n *\n * of(1, 2, 3).subscribe(\n * value => {\n * console.log('Adding: ' + value);\n * sum = sum + value;\n * },\n * undefined,\n * () => console.log('Sum equals: ' + sum)\n * );\n *\n * // Logs:\n * // 'Adding: 1'\n * // 'Adding: 2'\n * // 'Adding: 3'\n * // 'Sum equals: 6'\n * ```\n *\n * Cancel a subscription\n *\n * ```ts\n * import { interval } from 'rxjs';\n *\n * const subscription = interval(1000).subscribe({\n * next(num) {\n * console.log(num)\n * },\n * complete() {\n * // Will not be called, even when cancelling subscription.\n * console.log('completed!');\n * }\n * });\n *\n * setTimeout(() => {\n * subscription.unsubscribe();\n * console.log('unsubscribed!');\n * }, 2500);\n *\n * // Logs:\n * // 0 after 1s\n * // 1 after 2s\n * // 'unsubscribed!' after 2.5s\n * ```\n *\n * @param {Observer|Function} observerOrNext (optional) Either an observer with methods to be called,\n * or the first of three possible handlers, which is the handler for each value emitted from the subscribed\n * Observable.\n * @param {Function} error (optional) A handler for a terminal event resulting from an error. If no error handler is provided,\n * the error will be thrown asynchronously as unhandled.\n * @param {Function} complete (optional) A handler for a terminal event resulting from successful completion.\n * @return {Subscription} a subscription reference to the registered handlers\n * @method subscribe\n */\n subscribe(\n observerOrNext?: Partial> | ((value: T) => void) | null,\n error?: ((error: any) => void) | null,\n complete?: (() => void) | null\n ): Subscription {\n const subscriber = isSubscriber(observerOrNext) ? observerOrNext : new SafeSubscriber(observerOrNext, error, complete);\n\n errorContext(() => {\n const { operator, source } = this;\n subscriber.add(\n operator\n ? // We're dealing with a subscription in the\n // operator chain to one of our lifted operators.\n operator.call(subscriber, source)\n : source\n ? // If `source` has a value, but `operator` does not, something that\n // had intimate knowledge of our API, like our `Subject`, must have\n // set it. We're going to just call `_subscribe` directly.\n this._subscribe(subscriber)\n : // In all other cases, we're likely wrapping a user-provided initializer\n // function, so we need to catch errors and handle them appropriately.\n this._trySubscribe(subscriber)\n );\n });\n\n return subscriber;\n }\n\n /** @internal */\n protected _trySubscribe(sink: Subscriber): TeardownLogic {\n try {\n return this._subscribe(sink);\n } catch (err) {\n // We don't need to return anything in this case,\n // because it's just going to try to `add()` to a subscription\n // above.\n sink.error(err);\n }\n }\n\n /**\n * Used as a NON-CANCELLABLE means of subscribing to an observable, for use with\n * APIs that expect promises, like `async/await`. You cannot unsubscribe from this.\n *\n * **WARNING**: Only use this with observables you *know* will complete. If the source\n * observable does not complete, you will end up with a promise that is hung up, and\n * potentially all of the state of an async function hanging out in memory. To avoid\n * this situation, look into adding something like {@link timeout}, {@link take},\n * {@link takeWhile}, or {@link takeUntil} amongst others.\n *\n * #### Example\n *\n * ```ts\n * import { interval, take } from 'rxjs';\n *\n * const source$ = interval(1000).pipe(take(4));\n *\n * async function getTotal() {\n * let total = 0;\n *\n * await source$.forEach(value => {\n * total += value;\n * console.log('observable -> ' + value);\n * });\n *\n * return total;\n * }\n *\n * getTotal().then(\n * total => console.log('Total: ' + total)\n * );\n *\n * // Expected:\n * // 'observable -> 0'\n * // 'observable -> 1'\n * // 'observable -> 2'\n * // 'observable -> 3'\n * // 'Total: 6'\n * ```\n *\n * @param next a handler for each value emitted by the observable\n * @return a promise that either resolves on observable completion or\n * rejects with the handled error\n */\n forEach(next: (value: T) => void): Promise;\n\n /**\n * @param next a handler for each value emitted by the observable\n * @param promiseCtor a constructor function used to instantiate the Promise\n * @return a promise that either resolves on observable completion or\n * rejects with the handled error\n * @deprecated Passing a Promise constructor will no longer be available\n * in upcoming versions of RxJS. This is because it adds weight to the library, for very\n * little benefit. If you need this functionality, it is recommended that you either\n * polyfill Promise, or you create an adapter to convert the returned native promise\n * to whatever promise implementation you wanted. Will be removed in v8.\n */\n forEach(next: (value: T) => void, promiseCtor: PromiseConstructorLike): Promise;\n\n forEach(next: (value: T) => void, promiseCtor?: PromiseConstructorLike): Promise {\n promiseCtor = getPromiseCtor(promiseCtor);\n\n return new promiseCtor((resolve, reject) => {\n const subscriber = new SafeSubscriber({\n next: (value) => {\n try {\n next(value);\n } catch (err) {\n reject(err);\n subscriber.unsubscribe();\n }\n },\n error: reject,\n complete: resolve,\n });\n this.subscribe(subscriber);\n }) as Promise;\n }\n\n /** @internal */\n protected _subscribe(subscriber: Subscriber): TeardownLogic {\n return this.source?.subscribe(subscriber);\n }\n\n /**\n * An interop point defined by the es7-observable spec https://github.com/zenparsing/es-observable\n * @method Symbol.observable\n * @return {Observable} this instance of the observable\n */\n [Symbol_observable]() {\n return this;\n }\n\n /* tslint:disable:max-line-length */\n pipe(): Observable;\n pipe(op1: OperatorFunction): Observable;\n pipe(op1: OperatorFunction, op2: OperatorFunction): Observable;\n pipe(op1: OperatorFunction, op2: OperatorFunction, op3: OperatorFunction): Observable;\n pipe(\n op1: OperatorFunction,\n op2: OperatorFunction,\n op3: OperatorFunction,\n op4: OperatorFunction\n ): Observable;\n pipe(\n op1: OperatorFunction,\n op2: OperatorFunction,\n op3: OperatorFunction,\n op4: OperatorFunction,\n op5: OperatorFunction\n ): Observable;\n pipe(\n op1: OperatorFunction,\n op2: OperatorFunction,\n op3: OperatorFunction,\n op4: OperatorFunction,\n op5: OperatorFunction,\n op6: OperatorFunction\n ): Observable;\n pipe(\n op1: OperatorFunction,\n op2: OperatorFunction,\n op3: OperatorFunction,\n op4: OperatorFunction,\n op5: OperatorFunction,\n op6: OperatorFunction,\n op7: OperatorFunction\n ): Observable;\n pipe(\n op1: OperatorFunction,\n op2: OperatorFunction,\n op3: OperatorFunction,\n op4: OperatorFunction,\n op5: OperatorFunction,\n op6: OperatorFunction,\n op7: OperatorFunction,\n op8: OperatorFunction\n ): Observable;\n pipe(\n op1: OperatorFunction,\n op2: OperatorFunction,\n op3: OperatorFunction,\n op4: OperatorFunction,\n op5: OperatorFunction,\n op6: OperatorFunction,\n op7: OperatorFunction,\n op8: OperatorFunction,\n op9: OperatorFunction\n ): Observable;\n pipe(\n op1: OperatorFunction,\n op2: OperatorFunction,\n op3: OperatorFunction,\n op4: OperatorFunction,\n op5: OperatorFunction,\n op6: OperatorFunction,\n op7: OperatorFunction,\n op8: OperatorFunction,\n op9: OperatorFunction,\n ...operations: OperatorFunction[]\n ): Observable;\n /* tslint:enable:max-line-length */\n\n /**\n * Used to stitch together functional operators into a chain.\n * @method pipe\n * @return {Observable} the Observable result of all of the operators having\n * been called in the order they were passed in.\n *\n * ## Example\n *\n * ```ts\n * import { interval, filter, map, scan } from 'rxjs';\n *\n * interval(1000)\n * .pipe(\n * filter(x => x % 2 === 0),\n * map(x => x + x),\n * scan((acc, x) => acc + x)\n * )\n * .subscribe(x => console.log(x));\n * ```\n */\n pipe(...operations: OperatorFunction[]): Observable {\n return pipeFromArray(operations)(this);\n }\n\n /* tslint:disable:max-line-length */\n /** @deprecated Replaced with {@link firstValueFrom} and {@link lastValueFrom}. Will be removed in v8. Details: https://rxjs.dev/deprecations/to-promise */\n toPromise(): Promise;\n /** @deprecated Replaced with {@link firstValueFrom} and {@link lastValueFrom}. Will be removed in v8. Details: https://rxjs.dev/deprecations/to-promise */\n toPromise(PromiseCtor: typeof Promise): Promise;\n /** @deprecated Replaced with {@link firstValueFrom} and {@link lastValueFrom}. Will be removed in v8. Details: https://rxjs.dev/deprecations/to-promise */\n toPromise(PromiseCtor: PromiseConstructorLike): Promise;\n /* tslint:enable:max-line-length */\n\n /**\n * Subscribe to this Observable and get a Promise resolving on\n * `complete` with the last emission (if any).\n *\n * **WARNING**: Only use this with observables you *know* will complete. If the source\n * observable does not complete, you will end up with a promise that is hung up, and\n * potentially all of the state of an async function hanging out in memory. To avoid\n * this situation, look into adding something like {@link timeout}, {@link take},\n * {@link takeWhile}, or {@link takeUntil} amongst others.\n *\n * @method toPromise\n * @param [promiseCtor] a constructor function used to instantiate\n * the Promise\n * @return A Promise that resolves with the last value emit, or\n * rejects on an error. If there were no emissions, Promise\n * resolves with undefined.\n * @deprecated Replaced with {@link firstValueFrom} and {@link lastValueFrom}. Will be removed in v8. Details: https://rxjs.dev/deprecations/to-promise\n */\n toPromise(promiseCtor?: PromiseConstructorLike): Promise {\n promiseCtor = getPromiseCtor(promiseCtor);\n\n return new promiseCtor((resolve, reject) => {\n let value: T | undefined;\n this.subscribe(\n (x: T) => (value = x),\n (err: any) => reject(err),\n () => resolve(value)\n );\n }) as Promise;\n }\n}\n\n/**\n * Decides between a passed promise constructor from consuming code,\n * A default configured promise constructor, and the native promise\n * constructor and returns it. If nothing can be found, it will throw\n * an error.\n * @param promiseCtor The optional promise constructor to passed by consuming code\n */\nfunction getPromiseCtor(promiseCtor: PromiseConstructorLike | undefined) {\n return promiseCtor ?? config.Promise ?? Promise;\n}\n\nfunction isObserver(value: any): value is Observer {\n return value && isFunction(value.next) && isFunction(value.error) && isFunction(value.complete);\n}\n\nfunction isSubscriber(value: any): value is Subscriber {\n return (value && value instanceof Subscriber) || (isObserver(value) && isSubscription(value));\n}\n", "import { Observable } from '../Observable';\nimport { Subscriber } from '../Subscriber';\nimport { OperatorFunction } from '../types';\nimport { isFunction } from './isFunction';\n\n/**\n * Used to determine if an object is an Observable with a lift function.\n */\nexport function hasLift(source: any): source is { lift: InstanceType['lift'] } {\n return isFunction(source?.lift);\n}\n\n/**\n * Creates an `OperatorFunction`. Used to define operators throughout the library in a concise way.\n * @param init The logic to connect the liftedSource to the subscriber at the moment of subscription.\n */\nexport function operate(\n init: (liftedSource: Observable, subscriber: Subscriber) => (() => void) | void\n): OperatorFunction {\n return (source: Observable) => {\n if (hasLift(source)) {\n return source.lift(function (this: Subscriber, liftedSource: Observable) {\n try {\n return init(liftedSource, this);\n } catch (err) {\n this.error(err);\n }\n });\n }\n throw new TypeError('Unable to lift unknown Observable type');\n };\n}\n", "import { Subscriber } from '../Subscriber';\n\n/**\n * Creates an instance of an `OperatorSubscriber`.\n * @param destination The downstream subscriber.\n * @param onNext Handles next values, only called if this subscriber is not stopped or closed. Any\n * error that occurs in this function is caught and sent to the `error` method of this subscriber.\n * @param onError Handles errors from the subscription, any errors that occur in this handler are caught\n * and send to the `destination` error handler.\n * @param onComplete Handles completion notification from the subscription. Any errors that occur in\n * this handler are sent to the `destination` error handler.\n * @param onFinalize Additional teardown logic here. This will only be called on teardown if the\n * subscriber itself is not already closed. This is called after all other teardown logic is executed.\n */\nexport function createOperatorSubscriber(\n destination: Subscriber,\n onNext?: (value: T) => void,\n onComplete?: () => void,\n onError?: (err: any) => void,\n onFinalize?: () => void\n): Subscriber {\n return new OperatorSubscriber(destination, onNext, onComplete, onError, onFinalize);\n}\n\n/**\n * A generic helper for allowing operators to be created with a Subscriber and\n * use closures to capture necessary state from the operator function itself.\n */\nexport class OperatorSubscriber extends Subscriber {\n /**\n * Creates an instance of an `OperatorSubscriber`.\n * @param destination The downstream subscriber.\n * @param onNext Handles next values, only called if this subscriber is not stopped or closed. Any\n * error that occurs in this function is caught and sent to the `error` method of this subscriber.\n * @param onError Handles errors from the subscription, any errors that occur in this handler are caught\n * and send to the `destination` error handler.\n * @param onComplete Handles completion notification from the subscription. Any errors that occur in\n * this handler are sent to the `destination` error handler.\n * @param onFinalize Additional finalization logic here. This will only be called on finalization if the\n * subscriber itself is not already closed. This is called after all other finalization logic is executed.\n * @param shouldUnsubscribe An optional check to see if an unsubscribe call should truly unsubscribe.\n * NOTE: This currently **ONLY** exists to support the strange behavior of {@link groupBy}, where unsubscription\n * to the resulting observable does not actually disconnect from the source if there are active subscriptions\n * to any grouped observable. (DO NOT EXPOSE OR USE EXTERNALLY!!!)\n */\n constructor(\n destination: Subscriber,\n onNext?: (value: T) => void,\n onComplete?: () => void,\n onError?: (err: any) => void,\n private onFinalize?: () => void,\n private shouldUnsubscribe?: () => boolean\n ) {\n // It's important - for performance reasons - that all of this class's\n // members are initialized and that they are always initialized in the same\n // order. This will ensure that all OperatorSubscriber instances have the\n // same hidden class in V8. This, in turn, will help keep the number of\n // hidden classes involved in property accesses within the base class as\n // low as possible. If the number of hidden classes involved exceeds four,\n // the property accesses will become megamorphic and performance penalties\n // will be incurred - i.e. inline caches won't be used.\n //\n // The reasons for ensuring all instances have the same hidden class are\n // further discussed in this blog post from Benedikt Meurer:\n // https://benediktmeurer.de/2018/03/23/impact-of-polymorphism-on-component-based-frameworks-like-react/\n super(destination);\n this._next = onNext\n ? function (this: OperatorSubscriber, value: T) {\n try {\n onNext(value);\n } catch (err) {\n destination.error(err);\n }\n }\n : super._next;\n this._error = onError\n ? function (this: OperatorSubscriber, err: any) {\n try {\n onError(err);\n } catch (err) {\n // Send any errors that occur down stream.\n destination.error(err);\n } finally {\n // Ensure finalization.\n this.unsubscribe();\n }\n }\n : super._error;\n this._complete = onComplete\n ? function (this: OperatorSubscriber) {\n try {\n onComplete();\n } catch (err) {\n // Send any errors that occur down stream.\n destination.error(err);\n } finally {\n // Ensure finalization.\n this.unsubscribe();\n }\n }\n : super._complete;\n }\n\n unsubscribe() {\n if (!this.shouldUnsubscribe || this.shouldUnsubscribe()) {\n const { closed } = this;\n super.unsubscribe();\n // Execute additional teardown if we have any and we didn't already do so.\n !closed && this.onFinalize?.();\n }\n }\n}\n", "import { Subscription } from '../Subscription';\n\ninterface AnimationFrameProvider {\n schedule(callback: FrameRequestCallback): Subscription;\n requestAnimationFrame: typeof requestAnimationFrame;\n cancelAnimationFrame: typeof cancelAnimationFrame;\n delegate:\n | {\n requestAnimationFrame: typeof requestAnimationFrame;\n cancelAnimationFrame: typeof cancelAnimationFrame;\n }\n | undefined;\n}\n\nexport const animationFrameProvider: AnimationFrameProvider = {\n // When accessing the delegate, use the variable rather than `this` so that\n // the functions can be called without being bound to the provider.\n schedule(callback) {\n let request = requestAnimationFrame;\n let cancel: typeof cancelAnimationFrame | undefined = cancelAnimationFrame;\n const { delegate } = animationFrameProvider;\n if (delegate) {\n request = delegate.requestAnimationFrame;\n cancel = delegate.cancelAnimationFrame;\n }\n const handle = request((timestamp) => {\n // Clear the cancel function. The request has been fulfilled, so\n // attempting to cancel the request upon unsubscription would be\n // pointless.\n cancel = undefined;\n callback(timestamp);\n });\n return new Subscription(() => cancel?.(handle));\n },\n requestAnimationFrame(...args) {\n const { delegate } = animationFrameProvider;\n return (delegate?.requestAnimationFrame || requestAnimationFrame)(...args);\n },\n cancelAnimationFrame(...args) {\n const { delegate } = animationFrameProvider;\n return (delegate?.cancelAnimationFrame || cancelAnimationFrame)(...args);\n },\n delegate: undefined,\n};\n", "import { createErrorClass } from './createErrorClass';\n\nexport interface ObjectUnsubscribedError extends Error {}\n\nexport interface ObjectUnsubscribedErrorCtor {\n /**\n * @deprecated Internal implementation detail. Do not construct error instances.\n * Cannot be tagged as internal: https://github.com/ReactiveX/rxjs/issues/6269\n */\n new (): ObjectUnsubscribedError;\n}\n\n/**\n * An error thrown when an action is invalid because the object has been\n * unsubscribed.\n *\n * @see {@link Subject}\n * @see {@link BehaviorSubject}\n *\n * @class ObjectUnsubscribedError\n */\nexport const ObjectUnsubscribedError: ObjectUnsubscribedErrorCtor = createErrorClass(\n (_super) =>\n function ObjectUnsubscribedErrorImpl(this: any) {\n _super(this);\n this.name = 'ObjectUnsubscribedError';\n this.message = 'object unsubscribed';\n }\n);\n", "import { Operator } from './Operator';\nimport { Observable } from './Observable';\nimport { Subscriber } from './Subscriber';\nimport { Subscription, EMPTY_SUBSCRIPTION } from './Subscription';\nimport { Observer, SubscriptionLike, TeardownLogic } from './types';\nimport { ObjectUnsubscribedError } from './util/ObjectUnsubscribedError';\nimport { arrRemove } from './util/arrRemove';\nimport { errorContext } from './util/errorContext';\n\n/**\n * A Subject is a special type of Observable that allows values to be\n * multicasted to many Observers. Subjects are like EventEmitters.\n *\n * Every Subject is an Observable and an Observer. You can subscribe to a\n * Subject, and you can call next to feed values as well as error and complete.\n */\nexport class Subject extends Observable implements SubscriptionLike {\n closed = false;\n\n private currentObservers: Observer[] | null = null;\n\n /** @deprecated Internal implementation detail, do not use directly. Will be made internal in v8. */\n observers: Observer[] = [];\n /** @deprecated Internal implementation detail, do not use directly. Will be made internal in v8. */\n isStopped = false;\n /** @deprecated Internal implementation detail, do not use directly. Will be made internal in v8. */\n hasError = false;\n /** @deprecated Internal implementation detail, do not use directly. Will be made internal in v8. */\n thrownError: any = null;\n\n /**\n * Creates a \"subject\" by basically gluing an observer to an observable.\n *\n * @nocollapse\n * @deprecated Recommended you do not use. Will be removed at some point in the future. Plans for replacement still under discussion.\n */\n static create: (...args: any[]) => any = (destination: Observer, source: Observable): AnonymousSubject => {\n return new AnonymousSubject(destination, source);\n };\n\n constructor() {\n // NOTE: This must be here to obscure Observable's constructor.\n super();\n }\n\n /** @deprecated Internal implementation detail, do not use directly. Will be made internal in v8. */\n lift(operator: Operator): Observable {\n const subject = new AnonymousSubject(this, this);\n subject.operator = operator as any;\n return subject as any;\n }\n\n /** @internal */\n protected _throwIfClosed() {\n if (this.closed) {\n throw new ObjectUnsubscribedError();\n }\n }\n\n next(value: T) {\n errorContext(() => {\n this._throwIfClosed();\n if (!this.isStopped) {\n if (!this.currentObservers) {\n this.currentObservers = Array.from(this.observers);\n }\n for (const observer of this.currentObservers) {\n observer.next(value);\n }\n }\n });\n }\n\n error(err: any) {\n errorContext(() => {\n this._throwIfClosed();\n if (!this.isStopped) {\n this.hasError = this.isStopped = true;\n this.thrownError = err;\n const { observers } = this;\n while (observers.length) {\n observers.shift()!.error(err);\n }\n }\n });\n }\n\n complete() {\n errorContext(() => {\n this._throwIfClosed();\n if (!this.isStopped) {\n this.isStopped = true;\n const { observers } = this;\n while (observers.length) {\n observers.shift()!.complete();\n }\n }\n });\n }\n\n unsubscribe() {\n this.isStopped = this.closed = true;\n this.observers = this.currentObservers = null!;\n }\n\n get observed() {\n return this.observers?.length > 0;\n }\n\n /** @internal */\n protected _trySubscribe(subscriber: Subscriber): TeardownLogic {\n this._throwIfClosed();\n return super._trySubscribe(subscriber);\n }\n\n /** @internal */\n protected _subscribe(subscriber: Subscriber): Subscription {\n this._throwIfClosed();\n this._checkFinalizedStatuses(subscriber);\n return this._innerSubscribe(subscriber);\n }\n\n /** @internal */\n protected _innerSubscribe(subscriber: Subscriber) {\n const { hasError, isStopped, observers } = this;\n if (hasError || isStopped) {\n return EMPTY_SUBSCRIPTION;\n }\n this.currentObservers = null;\n observers.push(subscriber);\n return new Subscription(() => {\n this.currentObservers = null;\n arrRemove(observers, subscriber);\n });\n }\n\n /** @internal */\n protected _checkFinalizedStatuses(subscriber: Subscriber) {\n const { hasError, thrownError, isStopped } = this;\n if (hasError) {\n subscriber.error(thrownError);\n } else if (isStopped) {\n subscriber.complete();\n }\n }\n\n /**\n * Creates a new Observable with this Subject as the source. You can do this\n * to create custom Observer-side logic of the Subject and conceal it from\n * code that uses the Observable.\n * @return {Observable} Observable that the Subject casts to\n */\n asObservable(): Observable {\n const observable: any = new Observable();\n observable.source = this;\n return observable;\n }\n}\n\n/**\n * @class AnonymousSubject\n */\nexport class AnonymousSubject extends Subject {\n constructor(\n /** @deprecated Internal implementation detail, do not use directly. Will be made internal in v8. */\n public destination?: Observer,\n source?: Observable\n ) {\n super();\n this.source = source;\n }\n\n next(value: T) {\n this.destination?.next?.(value);\n }\n\n error(err: any) {\n this.destination?.error?.(err);\n }\n\n complete() {\n this.destination?.complete?.();\n }\n\n /** @internal */\n protected _subscribe(subscriber: Subscriber): Subscription {\n return this.source?.subscribe(subscriber) ?? EMPTY_SUBSCRIPTION;\n }\n}\n", "import { Subject } from './Subject';\nimport { Subscriber } from './Subscriber';\nimport { Subscription } from './Subscription';\n\n/**\n * A variant of Subject that requires an initial value and emits its current\n * value whenever it is subscribed to.\n *\n * @class BehaviorSubject\n */\nexport class BehaviorSubject extends Subject {\n constructor(private _value: T) {\n super();\n }\n\n get value(): T {\n return this.getValue();\n }\n\n /** @internal */\n protected _subscribe(subscriber: Subscriber): Subscription {\n const subscription = super._subscribe(subscriber);\n !subscription.closed && subscriber.next(this._value);\n return subscription;\n }\n\n getValue(): T {\n const { hasError, thrownError, _value } = this;\n if (hasError) {\n throw thrownError;\n }\n this._throwIfClosed();\n return _value;\n }\n\n next(value: T): void {\n super.next((this._value = value));\n }\n}\n", "import { TimestampProvider } from '../types';\n\ninterface DateTimestampProvider extends TimestampProvider {\n delegate: TimestampProvider | undefined;\n}\n\nexport const dateTimestampProvider: DateTimestampProvider = {\n now() {\n // Use the variable rather than `this` so that the function can be called\n // without being bound to the provider.\n return (dateTimestampProvider.delegate || Date).now();\n },\n delegate: undefined,\n};\n", "import { Subject } from './Subject';\nimport { TimestampProvider } from './types';\nimport { Subscriber } from './Subscriber';\nimport { Subscription } from './Subscription';\nimport { dateTimestampProvider } from './scheduler/dateTimestampProvider';\n\n/**\n * A variant of {@link Subject} that \"replays\" old values to new subscribers by emitting them when they first subscribe.\n *\n * `ReplaySubject` has an internal buffer that will store a specified number of values that it has observed. Like `Subject`,\n * `ReplaySubject` \"observes\" values by having them passed to its `next` method. When it observes a value, it will store that\n * value for a time determined by the configuration of the `ReplaySubject`, as passed to its constructor.\n *\n * When a new subscriber subscribes to the `ReplaySubject` instance, it will synchronously emit all values in its buffer in\n * a First-In-First-Out (FIFO) manner. The `ReplaySubject` will also complete, if it has observed completion; and it will\n * error if it has observed an error.\n *\n * There are two main configuration items to be concerned with:\n *\n * 1. `bufferSize` - This will determine how many items are stored in the buffer, defaults to infinite.\n * 2. `windowTime` - The amount of time to hold a value in the buffer before removing it from the buffer.\n *\n * Both configurations may exist simultaneously. So if you would like to buffer a maximum of 3 values, as long as the values\n * are less than 2 seconds old, you could do so with a `new ReplaySubject(3, 2000)`.\n *\n * ### Differences with BehaviorSubject\n *\n * `BehaviorSubject` is similar to `new ReplaySubject(1)`, with a couple of exceptions:\n *\n * 1. `BehaviorSubject` comes \"primed\" with a single value upon construction.\n * 2. `ReplaySubject` will replay values, even after observing an error, where `BehaviorSubject` will not.\n *\n * @see {@link Subject}\n * @see {@link BehaviorSubject}\n * @see {@link shareReplay}\n */\nexport class ReplaySubject extends Subject {\n private _buffer: (T | number)[] = [];\n private _infiniteTimeWindow = true;\n\n /**\n * @param bufferSize The size of the buffer to replay on subscription\n * @param windowTime The amount of time the buffered items will stay buffered\n * @param timestampProvider An object with a `now()` method that provides the current timestamp. This is used to\n * calculate the amount of time something has been buffered.\n */\n constructor(\n private _bufferSize = Infinity,\n private _windowTime = Infinity,\n private _timestampProvider: TimestampProvider = dateTimestampProvider\n ) {\n super();\n this._infiniteTimeWindow = _windowTime === Infinity;\n this._bufferSize = Math.max(1, _bufferSize);\n this._windowTime = Math.max(1, _windowTime);\n }\n\n next(value: T): void {\n const { isStopped, _buffer, _infiniteTimeWindow, _timestampProvider, _windowTime } = this;\n if (!isStopped) {\n _buffer.push(value);\n !_infiniteTimeWindow && _buffer.push(_timestampProvider.now() + _windowTime);\n }\n this._trimBuffer();\n super.next(value);\n }\n\n /** @internal */\n protected _subscribe(subscriber: Subscriber): Subscription {\n this._throwIfClosed();\n this._trimBuffer();\n\n const subscription = this._innerSubscribe(subscriber);\n\n const { _infiniteTimeWindow, _buffer } = this;\n // We use a copy here, so reentrant code does not mutate our array while we're\n // emitting it to a new subscriber.\n const copy = _buffer.slice();\n for (let i = 0; i < copy.length && !subscriber.closed; i += _infiniteTimeWindow ? 1 : 2) {\n subscriber.next(copy[i] as T);\n }\n\n this._checkFinalizedStatuses(subscriber);\n\n return subscription;\n }\n\n private _trimBuffer() {\n const { _bufferSize, _timestampProvider, _buffer, _infiniteTimeWindow } = this;\n // If we don't have an infinite buffer size, and we're over the length,\n // use splice to truncate the old buffer values off. Note that we have to\n // double the size for instances where we're not using an infinite time window\n // because we're storing the values and the timestamps in the same array.\n const adjustedBufferSize = (_infiniteTimeWindow ? 1 : 2) * _bufferSize;\n _bufferSize < Infinity && adjustedBufferSize < _buffer.length && _buffer.splice(0, _buffer.length - adjustedBufferSize);\n\n // Now, if we're not in an infinite time window, remove all values where the time is\n // older than what is allowed.\n if (!_infiniteTimeWindow) {\n const now = _timestampProvider.now();\n let last = 0;\n // Search the array for the first timestamp that isn't expired and\n // truncate the buffer up to that point.\n for (let i = 1; i < _buffer.length && (_buffer[i] as number) <= now; i += 2) {\n last = i;\n }\n last && _buffer.splice(0, last + 1);\n }\n }\n}\n", "import { Scheduler } from '../Scheduler';\nimport { Subscription } from '../Subscription';\nimport { SchedulerAction } from '../types';\n\n/**\n * A unit of work to be executed in a `scheduler`. An action is typically\n * created from within a {@link SchedulerLike} and an RxJS user does not need to concern\n * themselves about creating and manipulating an Action.\n *\n * ```ts\n * class Action extends Subscription {\n * new (scheduler: Scheduler, work: (state?: T) => void);\n * schedule(state?: T, delay: number = 0): Subscription;\n * }\n * ```\n *\n * @class Action\n */\nexport class Action extends Subscription {\n constructor(scheduler: Scheduler, work: (this: SchedulerAction, state?: T) => void) {\n super();\n }\n /**\n * Schedules this action on its parent {@link SchedulerLike} for execution. May be passed\n * some context object, `state`. May happen at some point in the future,\n * according to the `delay` parameter, if specified.\n * @param {T} [state] Some contextual data that the `work` function uses when\n * called by the Scheduler.\n * @param {number} [delay] Time to wait before executing the work, where the\n * time unit is implicit and defined by the Scheduler.\n * @return {void}\n */\n public schedule(state?: T, delay: number = 0): Subscription {\n return this;\n }\n}\n", "import type { TimerHandle } from './timerHandle';\ntype SetIntervalFunction = (handler: () => void, timeout?: number, ...args: any[]) => TimerHandle;\ntype ClearIntervalFunction = (handle: TimerHandle) => void;\n\ninterface IntervalProvider {\n setInterval: SetIntervalFunction;\n clearInterval: ClearIntervalFunction;\n delegate:\n | {\n setInterval: SetIntervalFunction;\n clearInterval: ClearIntervalFunction;\n }\n | undefined;\n}\n\nexport const intervalProvider: IntervalProvider = {\n // When accessing the delegate, use the variable rather than `this` so that\n // the functions can be called without being bound to the provider.\n setInterval(handler: () => void, timeout?: number, ...args) {\n const { delegate } = intervalProvider;\n if (delegate?.setInterval) {\n return delegate.setInterval(handler, timeout, ...args);\n }\n return setInterval(handler, timeout, ...args);\n },\n clearInterval(handle) {\n const { delegate } = intervalProvider;\n return (delegate?.clearInterval || clearInterval)(handle as any);\n },\n delegate: undefined,\n};\n", "import { Action } from './Action';\nimport { SchedulerAction } from '../types';\nimport { Subscription } from '../Subscription';\nimport { AsyncScheduler } from './AsyncScheduler';\nimport { intervalProvider } from './intervalProvider';\nimport { arrRemove } from '../util/arrRemove';\nimport { TimerHandle } from './timerHandle';\n\nexport class AsyncAction extends Action {\n public id: TimerHandle | undefined;\n public state?: T;\n // @ts-ignore: Property has no initializer and is not definitely assigned\n public delay: number;\n protected pending: boolean = false;\n\n constructor(protected scheduler: AsyncScheduler, protected work: (this: SchedulerAction, state?: T) => void) {\n super(scheduler, work);\n }\n\n public schedule(state?: T, delay: number = 0): Subscription {\n if (this.closed) {\n return this;\n }\n\n // Always replace the current state with the new state.\n this.state = state;\n\n const id = this.id;\n const scheduler = this.scheduler;\n\n //\n // Important implementation note:\n //\n // Actions only execute once by default, unless rescheduled from within the\n // scheduled callback. This allows us to implement single and repeat\n // actions via the same code path, without adding API surface area, as well\n // as mimic traditional recursion but across asynchronous boundaries.\n //\n // However, JS runtimes and timers distinguish between intervals achieved by\n // serial `setTimeout` calls vs. a single `setInterval` call. An interval of\n // serial `setTimeout` calls can be individually delayed, which delays\n // scheduling the next `setTimeout`, and so on. `setInterval` attempts to\n // guarantee the interval callback will be invoked more precisely to the\n // interval period, regardless of load.\n //\n // Therefore, we use `setInterval` to schedule single and repeat actions.\n // If the action reschedules itself with the same delay, the interval is not\n // canceled. If the action doesn't reschedule, or reschedules with a\n // different delay, the interval will be canceled after scheduled callback\n // execution.\n //\n if (id != null) {\n this.id = this.recycleAsyncId(scheduler, id, delay);\n }\n\n // Set the pending flag indicating that this action has been scheduled, or\n // has recursively rescheduled itself.\n this.pending = true;\n\n this.delay = delay;\n // If this action has already an async Id, don't request a new one.\n this.id = this.id ?? this.requestAsyncId(scheduler, this.id, delay);\n\n return this;\n }\n\n protected requestAsyncId(scheduler: AsyncScheduler, _id?: TimerHandle, delay: number = 0): TimerHandle {\n return intervalProvider.setInterval(scheduler.flush.bind(scheduler, this), delay);\n }\n\n protected recycleAsyncId(_scheduler: AsyncScheduler, id?: TimerHandle, delay: number | null = 0): TimerHandle | undefined {\n // If this action is rescheduled with the same delay time, don't clear the interval id.\n if (delay != null && this.delay === delay && this.pending === false) {\n return id;\n }\n // Otherwise, if the action's delay time is different from the current delay,\n // or the action has been rescheduled before it's executed, clear the interval id\n if (id != null) {\n intervalProvider.clearInterval(id);\n }\n\n return undefined;\n }\n\n /**\n * Immediately executes this action and the `work` it contains.\n * @return {any}\n */\n public execute(state: T, delay: number): any {\n if (this.closed) {\n return new Error('executing a cancelled action');\n }\n\n this.pending = false;\n const error = this._execute(state, delay);\n if (error) {\n return error;\n } else if (this.pending === false && this.id != null) {\n // Dequeue if the action didn't reschedule itself. Don't call\n // unsubscribe(), because the action could reschedule later.\n // For example:\n // ```\n // scheduler.schedule(function doWork(counter) {\n // /* ... I'm a busy worker bee ... */\n // var originalAction = this;\n // /* wait 100ms before rescheduling the action */\n // setTimeout(function () {\n // originalAction.schedule(counter + 1);\n // }, 100);\n // }, 1000);\n // ```\n this.id = this.recycleAsyncId(this.scheduler, this.id, null);\n }\n }\n\n protected _execute(state: T, _delay: number): any {\n let errored: boolean = false;\n let errorValue: any;\n try {\n this.work(state);\n } catch (e) {\n errored = true;\n // HACK: Since code elsewhere is relying on the \"truthiness\" of the\n // return here, we can't have it return \"\" or 0 or false.\n // TODO: Clean this up when we refactor schedulers mid-version-8 or so.\n errorValue = e ? e : new Error('Scheduled action threw falsy error');\n }\n if (errored) {\n this.unsubscribe();\n return errorValue;\n }\n }\n\n unsubscribe() {\n if (!this.closed) {\n const { id, scheduler } = this;\n const { actions } = scheduler;\n\n this.work = this.state = this.scheduler = null!;\n this.pending = false;\n\n arrRemove(actions, this);\n if (id != null) {\n this.id = this.recycleAsyncId(scheduler, id, null);\n }\n\n this.delay = null!;\n super.unsubscribe();\n }\n }\n}\n", "import { Action } from './scheduler/Action';\nimport { Subscription } from './Subscription';\nimport { SchedulerLike, SchedulerAction } from './types';\nimport { dateTimestampProvider } from './scheduler/dateTimestampProvider';\n\n/**\n * An execution context and a data structure to order tasks and schedule their\n * execution. Provides a notion of (potentially virtual) time, through the\n * `now()` getter method.\n *\n * Each unit of work in a Scheduler is called an `Action`.\n *\n * ```ts\n * class Scheduler {\n * now(): number;\n * schedule(work, delay?, state?): Subscription;\n * }\n * ```\n *\n * @class Scheduler\n * @deprecated Scheduler is an internal implementation detail of RxJS, and\n * should not be used directly. Rather, create your own class and implement\n * {@link SchedulerLike}. Will be made internal in v8.\n */\nexport class Scheduler implements SchedulerLike {\n public static now: () => number = dateTimestampProvider.now;\n\n constructor(private schedulerActionCtor: typeof Action, now: () => number = Scheduler.now) {\n this.now = now;\n }\n\n /**\n * A getter method that returns a number representing the current time\n * (at the time this function was called) according to the scheduler's own\n * internal clock.\n * @return {number} A number that represents the current time. May or may not\n * have a relation to wall-clock time. May or may not refer to a time unit\n * (e.g. milliseconds).\n */\n public now: () => number;\n\n /**\n * Schedules a function, `work`, for execution. May happen at some point in\n * the future, according to the `delay` parameter, if specified. May be passed\n * some context object, `state`, which will be passed to the `work` function.\n *\n * The given arguments will be processed an stored as an Action object in a\n * queue of actions.\n *\n * @param {function(state: ?T): ?Subscription} work A function representing a\n * task, or some unit of work to be executed by the Scheduler.\n * @param {number} [delay] Time to wait before executing the work, where the\n * time unit is implicit and defined by the Scheduler itself.\n * @param {T} [state] Some contextual data that the `work` function uses when\n * called by the Scheduler.\n * @return {Subscription} A subscription in order to be able to unsubscribe\n * the scheduled work.\n */\n public schedule(work: (this: SchedulerAction, state?: T) => void, delay: number = 0, state?: T): Subscription {\n return new this.schedulerActionCtor(this, work).schedule(state, delay);\n }\n}\n", "import { Scheduler } from '../Scheduler';\nimport { Action } from './Action';\nimport { AsyncAction } from './AsyncAction';\nimport { TimerHandle } from './timerHandle';\n\nexport class AsyncScheduler extends Scheduler {\n public actions: Array> = [];\n /**\n * A flag to indicate whether the Scheduler is currently executing a batch of\n * queued actions.\n * @type {boolean}\n * @internal\n */\n public _active: boolean = false;\n /**\n * An internal ID used to track the latest asynchronous task such as those\n * coming from `setTimeout`, `setInterval`, `requestAnimationFrame`, and\n * others.\n * @type {any}\n * @internal\n */\n public _scheduled: TimerHandle | undefined;\n\n constructor(SchedulerAction: typeof Action, now: () => number = Scheduler.now) {\n super(SchedulerAction, now);\n }\n\n public flush(action: AsyncAction): void {\n const { actions } = this;\n\n if (this._active) {\n actions.push(action);\n return;\n }\n\n let error: any;\n this._active = true;\n\n do {\n if ((error = action.execute(action.state, action.delay))) {\n break;\n }\n } while ((action = actions.shift()!)); // exhaust the scheduler queue\n\n this._active = false;\n\n if (error) {\n while ((action = actions.shift()!)) {\n action.unsubscribe();\n }\n throw error;\n }\n }\n}\n", "import { AsyncAction } from './AsyncAction';\nimport { AsyncScheduler } from './AsyncScheduler';\n\n/**\n *\n * Async Scheduler\n *\n * Schedule task as if you used setTimeout(task, duration)\n *\n * `async` scheduler schedules tasks asynchronously, by putting them on the JavaScript\n * event loop queue. It is best used to delay tasks in time or to schedule tasks repeating\n * in intervals.\n *\n * If you just want to \"defer\" task, that is to perform it right after currently\n * executing synchronous code ends (commonly achieved by `setTimeout(deferredTask, 0)`),\n * better choice will be the {@link asapScheduler} scheduler.\n *\n * ## Examples\n * Use async scheduler to delay task\n * ```ts\n * import { asyncScheduler } from 'rxjs';\n *\n * const task = () => console.log('it works!');\n *\n * asyncScheduler.schedule(task, 2000);\n *\n * // After 2 seconds logs:\n * // \"it works!\"\n * ```\n *\n * Use async scheduler to repeat task in intervals\n * ```ts\n * import { asyncScheduler } from 'rxjs';\n *\n * function task(state) {\n * console.log(state);\n * this.schedule(state + 1, 1000); // `this` references currently executing Action,\n * // which we reschedule with new state and delay\n * }\n *\n * asyncScheduler.schedule(task, 3000, 0);\n *\n * // Logs:\n * // 0 after 3s\n * // 1 after 4s\n * // 2 after 5s\n * // 3 after 6s\n * ```\n */\n\nexport const asyncScheduler = new AsyncScheduler(AsyncAction);\n\n/**\n * @deprecated Renamed to {@link asyncScheduler}. Will be removed in v8.\n */\nexport const async = asyncScheduler;\n", "import { AsyncAction } from './AsyncAction';\nimport { Subscription } from '../Subscription';\nimport { QueueScheduler } from './QueueScheduler';\nimport { SchedulerAction } from '../types';\nimport { TimerHandle } from './timerHandle';\n\nexport class QueueAction extends AsyncAction {\n constructor(protected scheduler: QueueScheduler, protected work: (this: SchedulerAction, state?: T) => void) {\n super(scheduler, work);\n }\n\n public schedule(state?: T, delay: number = 0): Subscription {\n if (delay > 0) {\n return super.schedule(state, delay);\n }\n this.delay = delay;\n this.state = state;\n this.scheduler.flush(this);\n return this;\n }\n\n public execute(state: T, delay: number): any {\n return delay > 0 || this.closed ? super.execute(state, delay) : this._execute(state, delay);\n }\n\n protected requestAsyncId(scheduler: QueueScheduler, id?: TimerHandle, delay: number = 0): TimerHandle {\n // If delay exists and is greater than 0, or if the delay is null (the\n // action wasn't rescheduled) but was originally scheduled as an async\n // action, then recycle as an async action.\n\n if ((delay != null && delay > 0) || (delay == null && this.delay > 0)) {\n return super.requestAsyncId(scheduler, id, delay);\n }\n\n // Otherwise flush the scheduler starting with this action.\n scheduler.flush(this);\n\n // HACK: In the past, this was returning `void`. However, `void` isn't a valid\n // `TimerHandle`, and generally the return value here isn't really used. So the\n // compromise is to return `0` which is both \"falsy\" and a valid `TimerHandle`,\n // as opposed to refactoring every other instanceo of `requestAsyncId`.\n return 0;\n }\n}\n", "import { AsyncScheduler } from './AsyncScheduler';\n\nexport class QueueScheduler extends AsyncScheduler {\n}\n", "import { QueueAction } from './QueueAction';\nimport { QueueScheduler } from './QueueScheduler';\n\n/**\n *\n * Queue Scheduler\n *\n * Put every next task on a queue, instead of executing it immediately\n *\n * `queue` scheduler, when used with delay, behaves the same as {@link asyncScheduler} scheduler.\n *\n * When used without delay, it schedules given task synchronously - executes it right when\n * it is scheduled. However when called recursively, that is when inside the scheduled task,\n * another task is scheduled with queue scheduler, instead of executing immediately as well,\n * that task will be put on a queue and wait for current one to finish.\n *\n * This means that when you execute task with `queue` scheduler, you are sure it will end\n * before any other task scheduled with that scheduler will start.\n *\n * ## Examples\n * Schedule recursively first, then do something\n * ```ts\n * import { queueScheduler } from 'rxjs';\n *\n * queueScheduler.schedule(() => {\n * queueScheduler.schedule(() => console.log('second')); // will not happen now, but will be put on a queue\n *\n * console.log('first');\n * });\n *\n * // Logs:\n * // \"first\"\n * // \"second\"\n * ```\n *\n * Reschedule itself recursively\n * ```ts\n * import { queueScheduler } from 'rxjs';\n *\n * queueScheduler.schedule(function(state) {\n * if (state !== 0) {\n * console.log('before', state);\n * this.schedule(state - 1); // `this` references currently executing Action,\n * // which we reschedule with new state\n * console.log('after', state);\n * }\n * }, 0, 3);\n *\n * // In scheduler that runs recursively, you would expect:\n * // \"before\", 3\n * // \"before\", 2\n * // \"before\", 1\n * // \"after\", 1\n * // \"after\", 2\n * // \"after\", 3\n *\n * // But with queue it logs:\n * // \"before\", 3\n * // \"after\", 3\n * // \"before\", 2\n * // \"after\", 2\n * // \"before\", 1\n * // \"after\", 1\n * ```\n */\n\nexport const queueScheduler = new QueueScheduler(QueueAction);\n\n/**\n * @deprecated Renamed to {@link queueScheduler}. Will be removed in v8.\n */\nexport const queue = queueScheduler;\n", "import { AsyncAction } from './AsyncAction';\nimport { AnimationFrameScheduler } from './AnimationFrameScheduler';\nimport { SchedulerAction } from '../types';\nimport { animationFrameProvider } from './animationFrameProvider';\nimport { TimerHandle } from './timerHandle';\n\nexport class AnimationFrameAction extends AsyncAction {\n constructor(protected scheduler: AnimationFrameScheduler, protected work: (this: SchedulerAction, state?: T) => void) {\n super(scheduler, work);\n }\n\n protected requestAsyncId(scheduler: AnimationFrameScheduler, id?: TimerHandle, delay: number = 0): TimerHandle {\n // If delay is greater than 0, request as an async action.\n if (delay !== null && delay > 0) {\n return super.requestAsyncId(scheduler, id, delay);\n }\n // Push the action to the end of the scheduler queue.\n scheduler.actions.push(this);\n // If an animation frame has already been requested, don't request another\n // one. If an animation frame hasn't been requested yet, request one. Return\n // the current animation frame request id.\n return scheduler._scheduled || (scheduler._scheduled = animationFrameProvider.requestAnimationFrame(() => scheduler.flush(undefined)));\n }\n\n protected recycleAsyncId(scheduler: AnimationFrameScheduler, id?: TimerHandle, delay: number = 0): TimerHandle | undefined {\n // If delay exists and is greater than 0, or if the delay is null (the\n // action wasn't rescheduled) but was originally scheduled as an async\n // action, then recycle as an async action.\n if (delay != null ? delay > 0 : this.delay > 0) {\n return super.recycleAsyncId(scheduler, id, delay);\n }\n // If the scheduler queue has no remaining actions with the same async id,\n // cancel the requested animation frame and set the scheduled flag to\n // undefined so the next AnimationFrameAction will request its own.\n const { actions } = scheduler;\n if (id != null && actions[actions.length - 1]?.id !== id) {\n animationFrameProvider.cancelAnimationFrame(id as number);\n scheduler._scheduled = undefined;\n }\n // Return undefined so the action knows to request a new async id if it's rescheduled.\n return undefined;\n }\n}\n", "import { AsyncAction } from './AsyncAction';\nimport { AsyncScheduler } from './AsyncScheduler';\n\nexport class AnimationFrameScheduler extends AsyncScheduler {\n public flush(action?: AsyncAction): void {\n this._active = true;\n // The async id that effects a call to flush is stored in _scheduled.\n // Before executing an action, it's necessary to check the action's async\n // id to determine whether it's supposed to be executed in the current\n // flush.\n // Previous implementations of this method used a count to determine this,\n // but that was unsound, as actions that are unsubscribed - i.e. cancelled -\n // are removed from the actions array and that can shift actions that are\n // scheduled to be executed in a subsequent flush into positions at which\n // they are executed within the current flush.\n const flushId = this._scheduled;\n this._scheduled = undefined;\n\n const { actions } = this;\n let error: any;\n action = action || actions.shift()!;\n\n do {\n if ((error = action.execute(action.state, action.delay))) {\n break;\n }\n } while ((action = actions[0]) && action.id === flushId && actions.shift());\n\n this._active = false;\n\n if (error) {\n while ((action = actions[0]) && action.id === flushId && actions.shift()) {\n action.unsubscribe();\n }\n throw error;\n }\n }\n}\n", "import { AnimationFrameAction } from './AnimationFrameAction';\nimport { AnimationFrameScheduler } from './AnimationFrameScheduler';\n\n/**\n *\n * Animation Frame Scheduler\n *\n * Perform task when `window.requestAnimationFrame` would fire\n *\n * When `animationFrame` scheduler is used with delay, it will fall back to {@link asyncScheduler} scheduler\n * behaviour.\n *\n * Without delay, `animationFrame` scheduler can be used to create smooth browser animations.\n * It makes sure scheduled task will happen just before next browser content repaint,\n * thus performing animations as efficiently as possible.\n *\n * ## Example\n * Schedule div height animation\n * ```ts\n * // html:
\n * import { animationFrameScheduler } from 'rxjs';\n *\n * const div = document.querySelector('div');\n *\n * animationFrameScheduler.schedule(function(height) {\n * div.style.height = height + \"px\";\n *\n * this.schedule(height + 1); // `this` references currently executing Action,\n * // which we reschedule with new state\n * }, 0, 0);\n *\n * // You will see a div element growing in height\n * ```\n */\n\nexport const animationFrameScheduler = new AnimationFrameScheduler(AnimationFrameAction);\n\n/**\n * @deprecated Renamed to {@link animationFrameScheduler}. Will be removed in v8.\n */\nexport const animationFrame = animationFrameScheduler;\n", "import { Observable } from '../Observable';\nimport { SchedulerLike } from '../types';\n\n/**\n * A simple Observable that emits no items to the Observer and immediately\n * emits a complete notification.\n *\n * Just emits 'complete', and nothing else.\n *\n * ![](empty.png)\n *\n * A simple Observable that only emits the complete notification. It can be used\n * for composing with other Observables, such as in a {@link mergeMap}.\n *\n * ## Examples\n *\n * Log complete notification\n *\n * ```ts\n * import { EMPTY } from 'rxjs';\n *\n * EMPTY.subscribe({\n * next: () => console.log('Next'),\n * complete: () => console.log('Complete!')\n * });\n *\n * // Outputs\n * // Complete!\n * ```\n *\n * Emit the number 7, then complete\n *\n * ```ts\n * import { EMPTY, startWith } from 'rxjs';\n *\n * const result = EMPTY.pipe(startWith(7));\n * result.subscribe(x => console.log(x));\n *\n * // Outputs\n * // 7\n * ```\n *\n * Map and flatten only odd numbers to the sequence `'a'`, `'b'`, `'c'`\n *\n * ```ts\n * import { interval, mergeMap, of, EMPTY } from 'rxjs';\n *\n * const interval$ = interval(1000);\n * const result = interval$.pipe(\n * mergeMap(x => x % 2 === 1 ? of('a', 'b', 'c') : EMPTY),\n * );\n * result.subscribe(x => console.log(x));\n *\n * // Results in the following to the console:\n * // x is equal to the count on the interval, e.g. (0, 1, 2, 3, ...)\n * // x will occur every 1000ms\n * // if x % 2 is equal to 1, print a, b, c (each on its own)\n * // if x % 2 is not equal to 1, nothing will be output\n * ```\n *\n * @see {@link Observable}\n * @see {@link NEVER}\n * @see {@link of}\n * @see {@link throwError}\n */\nexport const EMPTY = new Observable((subscriber) => subscriber.complete());\n\n/**\n * @param scheduler A {@link SchedulerLike} to use for scheduling\n * the emission of the complete notification.\n * @deprecated Replaced with the {@link EMPTY} constant or {@link scheduled} (e.g. `scheduled([], scheduler)`). Will be removed in v8.\n */\nexport function empty(scheduler?: SchedulerLike) {\n return scheduler ? emptyScheduled(scheduler) : EMPTY;\n}\n\nfunction emptyScheduled(scheduler: SchedulerLike) {\n return new Observable((subscriber) => scheduler.schedule(() => subscriber.complete()));\n}\n", "import { SchedulerLike } from '../types';\nimport { isFunction } from './isFunction';\n\nexport function isScheduler(value: any): value is SchedulerLike {\n return value && isFunction(value.schedule);\n}\n", "import { SchedulerLike } from '../types';\nimport { isFunction } from './isFunction';\nimport { isScheduler } from './isScheduler';\n\nfunction last(arr: T[]): T | undefined {\n return arr[arr.length - 1];\n}\n\nexport function popResultSelector(args: any[]): ((...args: unknown[]) => unknown) | undefined {\n return isFunction(last(args)) ? args.pop() : undefined;\n}\n\nexport function popScheduler(args: any[]): SchedulerLike | undefined {\n return isScheduler(last(args)) ? args.pop() : undefined;\n}\n\nexport function popNumber(args: any[], defaultValue: number): number {\n return typeof last(args) === 'number' ? args.pop()! : defaultValue;\n}\n", "export const isArrayLike = ((x: any): x is ArrayLike => x && typeof x.length === 'number' && typeof x !== 'function');", "import { isFunction } from \"./isFunction\";\n\n/**\n * Tests to see if the object is \"thennable\".\n * @param value the object to test\n */\nexport function isPromise(value: any): value is PromiseLike {\n return isFunction(value?.then);\n}\n", "import { InteropObservable } from '../types';\nimport { observable as Symbol_observable } from '../symbol/observable';\nimport { isFunction } from './isFunction';\n\n/** Identifies an input as being Observable (but not necessary an Rx Observable) */\nexport function isInteropObservable(input: any): input is InteropObservable {\n return isFunction(input[Symbol_observable]);\n}\n", "import { isFunction } from './isFunction';\n\nexport function isAsyncIterable(obj: any): obj is AsyncIterable {\n return Symbol.asyncIterator && isFunction(obj?.[Symbol.asyncIterator]);\n}\n", "/**\n * Creates the TypeError to throw if an invalid object is passed to `from` or `scheduled`.\n * @param input The object that was passed.\n */\nexport function createInvalidObservableTypeError(input: any) {\n // TODO: We should create error codes that can be looked up, so this can be less verbose.\n return new TypeError(\n `You provided ${\n input !== null && typeof input === 'object' ? 'an invalid object' : `'${input}'`\n } where a stream was expected. You can provide an Observable, Promise, ReadableStream, Array, AsyncIterable, or Iterable.`\n );\n}\n", "export function getSymbolIterator(): symbol {\n if (typeof Symbol !== 'function' || !Symbol.iterator) {\n return '@@iterator' as any;\n }\n\n return Symbol.iterator;\n}\n\nexport const iterator = getSymbolIterator();\n", "import { iterator as Symbol_iterator } from '../symbol/iterator';\nimport { isFunction } from './isFunction';\n\n/** Identifies an input as being an Iterable */\nexport function isIterable(input: any): input is Iterable {\n return isFunction(input?.[Symbol_iterator]);\n}\n", "import { ReadableStreamLike } from '../types';\nimport { isFunction } from './isFunction';\n\nexport async function* readableStreamLikeToAsyncGenerator(readableStream: ReadableStreamLike): AsyncGenerator {\n const reader = readableStream.getReader();\n try {\n while (true) {\n const { value, done } = await reader.read();\n if (done) {\n return;\n }\n yield value!;\n }\n } finally {\n reader.releaseLock();\n }\n}\n\nexport function isReadableStreamLike(obj: any): obj is ReadableStreamLike {\n // We don't want to use instanceof checks because they would return\n // false for instances from another Realm, like an +

+ +
+
+
    +
  • +

    Go to User User Portal

    +
  • +
  • +

    Click the "Sign Up" button and fill out personal information as prompted

    +
  • +
  • +

    We recommend using an institutional email address (e.g., ending with .edu, .org, or .gov)

    +
  • +
  • +

    Please add your ORCID ORCID. If you don't have an ORCID, get one today!

    +
  • +
+

Access and Search the CyVerse Learning Center

+
    +
  • Go to Learning Learning Center
  • +
  • +
    +
    Explore the menu items on the sidebar
    +
    +
      +
    • Quick Start Guides will help you with quick, specific tasks
    • +
    • Platform Guides are more in-depth guides of CyVerse's + platforms
    • +
    • Tutorials are start-to-finish lessons on accomplishing + certain analyses and tasks using CyVerse
    • +
    +
    +
    +
  • +
+
+

Self Assessment Questions

+
+What are the recommended email address endings for creating a CyVerse account? +

(A) .edu, .org, .gov

+

(B) .org, .com, .net

+

(C) .edu, .io, .xyz

+
+Answer +

(A) .edu, .org, .gov

+
+
+
+Learning Center Tutorials are in-depth guides of each of CyVerse's platforms? +

True or False

+
+Answer +

False Tutorials are start-to-finish lessons on accomplishing certain analyses and tasks, while Platform Guides are in-depth guides of each CyVerse platform.

+
+
+
+

Fix or improve this documentation

+ +
+

Learning Center Home

+ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +
+
+
+ + + + + + + + + + \ No newline at end of file diff --git a/step1/step1.md b/step1/step1.md new file mode 100644 index 0000000..b01952b --- /dev/null +++ b/step1/step1.md @@ -0,0 +1,78 @@ +# Course Overview + +!!! Tip "Learning Objectives" + + - Understand the history of CyVerse and how it is used + - Know where to locate user documentation on the [CyVerse Learning Center](https://learning.cyverse.org) + - Create a CyVerse [account](https://user.cyverse.org) and enroll in the [USDA Forest Service Workshop](https://user.cyverse.org/workshops/130) + - Understand how data management works in CyVerse Data Store + - Understand how to launch and complete Interactive applications in the Discovery Environment + +------------------------------------------------------------------------ + +This material is ported from the [CyVerse Self-Guided Tour](https://learning.cyverse.org/mooc/){target=_blank} and modified to applications more aligned with US Forest Service research. + +The original videos for the Self-Guided Tour are maintained for your reuse: + +>
+> +>
+ +------------------------------------------------------------------------ + +## Create a CyVerse Account + +- Go to [![User](assets/cyverse_ball_2022.png){width="15"}](https://user.cyverse.org/){target=_blank} [User Portal](https://user.cyverse.org){target=_blank} + +- Click the "Sign Up" button and fill out personal information as prompted + +- We recommend using an institutional email address (e.g., ending with .edu, .org, or .gov) + +- Please add your [![ORCID](assets/240px-ORCID_iD.png){width="15"}](https://orcid.org){target=_blank} [ORCID](https://orcid.org){target=_blank}. If you don't have an ORCID, get one today! + +## Access and Search the CyVerse Learning Center + +- Go to [![Learning](assets/cyverse_ball_2022.png){width="15"}](https://learning.cyverse.org/){target=_blank} [Learning Center](https://learning.cyverse.org){target=_blank} +- Explore the menu items on the sidebar + + : - [Quick Start Guides](https://learning.cyverse.org/vice/quick-rstudio/){target=_blank} will help you with quick, specific tasks + - Platform Guides are more in-depth guides of CyVerse's + platforms + - [Tutorials](https://learning.cyverse.org/tutorials/){target=_blank} are start-to-finish lessons on accomplishing + certain analyses and tasks using CyVerse + +------------------------------------------------------------------------ + +### Self Assessment Questions + +??? Question "What are the recommended email address endings for creating a CyVerse account?" + + **(A)** .edu, .org, .gov + + **(B)** .org, .com, .net + + **(C)** .edu, .io, .xyz + + ??? success "Answer" + + **(A)** .edu, .org, .gov + +??? Question "Learning Center Tutorials are in-depth guides of each of CyVerse's platforms?" + + **True or False** + + ??? success "Answer" + + **False** Tutorials are start-to-finish lessons on accomplishing certain analyses and tasks, while Platform Guides are in-depth guides of each CyVerse platform. + +----------------------------------------------------------------------- + +**Fix or improve this documentation** + + - Search for an answer: + [CyVerse Learning Center](https://learning.cyverse.org){target=_blank} + - Send feedback: + +------------------------------------------------------------------------ + +[:material-rocket: Learning Center Home](http://learning.cyverse.org/) diff --git a/step2/index.html b/step2/index.html new file mode 100644 index 0000000..01e4922 --- /dev/null +++ b/step2/index.html @@ -0,0 +1,1101 @@ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + CyVerse Background - Cary Institute CyVerse Self-Guided Course + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +
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+
+ + + + + + + +
+
+
+ + + +
+
+
+ + + + + +
+
+
+ + + +
+
+ + + + + + + +

CyVerse Background

+
+

Learning Objectives

+
    +
  • Know the background of the CyVerse project
  • +
  • Understand basic capabilities of the CyVerse platform
  • +
+
+

Description:

+

In this section we will cover a brief history of the CyVerse platform, +explain some of the basic scientific applications, and give some details +on how different CyVerse installations work.

+
+

Videos and Slides

+

Watch the video for this section and complete the self-assessment +questions.

+
+

+ +

+
+
+

Self Assessment Questions

+
+What is cyberinfrastructure? +
+Answer +

Cyberinfrastructure is more than just an online computing platform. +It's the combination of computing and data management tools along with training and support. +Making these tools work nicely together and giving you the training and help you need to get work done is the goal for CyVerse.

+
+
+
+You need to know how to use the command line to use CyVerse +

True or False

+
+Answer +

FALSE. There are some tools and services where you can use a command line interface if you desire, +but most tools and services don't require you to use any command line interface.

+
+
+
+How does CyVerse USA differ from other CyVerse installations? +
+Answer +

CyVerse US is the original and main CyVerse platform, the one you will visit if you are using any platform served by cyverse.org. +CyVerse US generally has the broadest set of tools and services. +While anyone can get a free account, there may be some limitations for non-US users.

+
+
+
+

Fix or improve this documentation

+ +
+

Learning Center Home

+ + + + + + + + + + + + + + + + + + + + + + +
+
+ + + +
+ + + +
+ + + +
+
+
+
+ + + + + + + + + + \ No newline at end of file diff --git a/step2/step2.md b/step2/step2.md new file mode 100644 index 0000000..6c153a2 --- /dev/null +++ b/step2/step2.md @@ -0,0 +1,64 @@ +# CyVerse Background + +!!! tip "Learning Objectives" + + - Know the background of the CyVerse project + - Understand basic capabilities of the CyVerse platform + +**Description:** + +In this section we will cover a brief history of the CyVerse platform, +explain some of the basic scientific applications, and give some details +on how different CyVerse installations work. + +------------------------------------------------------------------------ + +## Videos and Slides + +Watch the video for this section and complete the self-assessment +questions. + +>
+> +>
+ +------------------------------------------------------------------------ + +### Self Assessment Questions + +??? Question "What is cyberinfrastructure?" + + ??? success "Answer" + + Cyberinfrastructure is more than just an online computing platform. + It's the combination of computing and data management tools along with training and support. + Making these tools work nicely together and giving you the training and help you need to get work done is the goal for CyVerse. + +??? Question "You need to know how to use the command line to use CyVerse" + + **True or False** + + ??? success "Answer" + + **FALSE**. There are some tools and services where you can use a command line interface if you desire, + but most tools and services don't require you to use any command line interface. + +??? Question "How does CyVerse USA differ from other CyVerse installations?" + + + ??? success "Answer" + + CyVerse US is the original and main CyVerse platform, the one you will visit if you are using any platform served by cyverse.org. + CyVerse US generally has the broadest set of tools and services. + While anyone can get a free account, there may be some limitations for non-US users. + +----------------------------------------------------------------------- + +**Fix or improve this documentation** + + - Search for an answer: [CyVerse Learning Center](https://learning.cyverse.org){target=_blank} + - Send feedback: + +------------------------------------------------------------------------ + +[:material-rocket: Learning Center Home](http://learning.cyverse.org/) diff --git a/step3/index.html b/step3/index.html new file mode 100644 index 0000000..59b38f7 --- /dev/null +++ b/step3/index.html @@ -0,0 +1,1140 @@ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + Tour of Discovery Environment - Cary Institute CyVerse Self-Guided Course + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +
+ +
+ + + + + + +
+ + + + + + + +
+ +
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+ + + + + +
+
+
+ + + +
+
+ + + + + + + +

Tour of the Discovery Environment

+
+

Learning Objectives

+
    +
  • Sign up and log in to the Discovery Environment
  • +
  • Learn about the major menu items
  • +
  • Create folder for data and analysis
  • +
+
+

Description:

+

This module introduces the web interface of the Discovery Environment. +Follow the self-guided tour to navigate through each of the major menu +items and learn what you can do in each menu. Lastly, you will create a +folder in your home directory for your data and analyses which you can +use for subsequent modules.

+
+
+

+ +

+
+
+

Self-guided Discovery Environment Tour

+
    +
  1. +

    Sign up and log into the CyVerse DE Discovery Environment.

    +
  2. +
  3. +

    Familiarize with platform by hovering and clicking on the different + options: + a. Use the search bar where you can search for anything in the Data, Apps, and Analyses panels. You can select to limit the search using the dropdown menu of these panels on the search bar. + b. Use the question button to chat with CyVerse support. + c. Use the bag feature to organize items you want to download (e.g. like an online shopping cart). + d. Use notifications to see the history and status of analyses and data sharing, and other transactions.

    +
  4. +
  5. +

    On the left-hand sidebar, click on the following to see what is available:

    +

    DE Menu

    +
      +
    • home Home - Dashboard
    • +
    • data Data - Interface to the Data Store, including your personal and shared data
    • +
    • apps Apps - Applications (including VICE interactive applications)
    • +
    • analysis Analyses - Status and history of analysis jobs
    • +
    • shell Cloud shell - Quicklaunch of a Linux shell
    • +
    • team Teams - Organize collaborators and sharing
    • +
    • bank Collections - Public collections of applications and data
    • +
    • help Help - Help and support
    • +
    +
  6. +
+
+Tip +

You can expand the navigation side bar for a detailed description of views in the Discovery Environment by clicking on the button.

+
+
    +
  1. +

    Go back to the Data menu and familiarize with the options:

    +

    a. Your folder in Data

    +

    b. Click on the "Shared with me" folder

    +

    c. Then select "Community Data" folder

    +

    d. "Trash"

    +
  2. +
+
+

Self Assessment Questions

+
+Which of the following is NOT part of the Discovery Environment Menu? +

A. Data

+

B. Apps

+

C. Teams

+

D. Videos

+
+Answer +

Correct answer is D.

+

Although videos are not a DE menu, videos and webinars are available in the 'Home' view dashboard.

+
+
+
+Select all that applies: Which of these can you do on the Discovery Environment? +

A. Create public and private teams

+

B. Search for data and apps

+

C. Send message to other CyVerse users

+

D. Launch environments like Jupyter and Rstudio

+
+Answer +

Correct answer are A, B, D.

+
+
+
+

Fix or improve this documentation

+ +
+

Learning Center Home

+ + + + + + + + + + + + + + + + + + + + + + +
+
+ + + +
+ + + +
+ + + +
+
+
+
+ + + + + + + + + + \ No newline at end of file diff --git a/step3/step3.md b/step3/step3.md new file mode 100644 index 0000000..711c0f1 --- /dev/null +++ b/step3/step3.md @@ -0,0 +1,118 @@ +[de]: assets/de/logos/deIcon.svg +[home]: assets/de/menu_items/homeIcon.svg +[data]: assets/de/menu_items/dataIcon.svg +[apps]: assets/de/menu_items/appsIcon.svg +[analysis]: assets/de/menu_items/analysisIcon.svg +[shell]: assets/de/menu_items/webshellIcon.svg +[team]: assets/de/menu_items/teamsIcon.svg +[bank]: assets/de/menu_items/bank.svg +[help]: assets/de/menu_items/helpIcon.svg + +# Tour of the Discovery Environment + +!!! tip "Learning Objectives" + + - Sign up and log in to the Discovery Environment + - Learn about the major menu items + - Create folder for data and analysis + +**Description:** + +This module introduces the web interface of the Discovery Environment. +Follow the self-guided tour to navigate through each of the major menu +items and learn what you can do in each menu. Lastly, you will create a +folder in your home directory for your data and analyses which you can +use for subsequent modules. + +--- + +>
+> +>
+ +--- + +## Self-guided Discovery Environment Tour + +1. Sign up and log into the CyVerse [![DE](assets/de/logos/deIcon.png){width="20"}](https://de.cyverse.org/data){target=_blank} [Discovery Environment](https://de.cyverse.org/de){target=_blank}. + +2. Familiarize with platform by hovering and clicking on the different + options: + a. Use the search bar where you can search for anything in the Data, Apps, and Analyses panels. You can select to limit the search using the dropdown menu of these panels on the search bar. + b. Use the question button to chat with CyVerse support. + c. Use the bag feature to organize items you want to download (e.g. like an online shopping cart). + d. Use notifications to see the history and status of analyses and data sharing, and other transactions. + +3. On the left-hand sidebar, click on the following to see what is available: + + [![DE Menu](assets/de/navigation.png){width="150", align=left}](https://de.cyverse.org/data){target=_blank} + + - ![home]{width=20} **Home** - Dashboard + - ![data]{width=20} **Data** - Interface to the Data Store, including your personal and shared data + - ![apps]{width=20} **Apps** - Applications (including VICE interactive applications) + - ![analysis]{width=20} **Analyses** - Status and history of analysis jobs + - ![shell]{width=20} **Cloud shell** - Quicklaunch of a Linux shell + - ![team]{width=20} **Teams** - Organize collaborators and sharing + - ![bank]{width=20} **Collections** - Public collections of applications and data + - ![help]{width=20} **Help** - Help and support + +??? Tip + + You can expand the navigation side bar for a detailed description of views in the Discovery Environment by clicking on the :fontawesome-solid-bars: button. + +4. Go back to the Data menu and familiarize with the options: + + a. Your folder in Data ![][data]{width=25} + + b. Click on the "Shared with me" folder + + c. Then select "Community Data" folder + + d. "Trash" + +------------------------------------------------------------------------ + +### Self Assessment Questions + +??? Question "Which of the following is NOT part of the Discovery Environment Menu?" + + **A.** Data + + **B.** Apps + + **C.** Teams + + **D.** Videos + + ??? Success "Answer" + + **Correct answer is D.** + + Although videos are not a DE menu, videos and webinars are available in the 'Home' view dashboard. + + +??? Question "Select all that applies: Which of these can you do on the Discovery Environment?" + + **A.** Create public and private teams + + **B.** Search for data and apps + + **C.** Send message to other CyVerse users + + **D.** Launch environments like Jupyter and Rstudio + + ??? Success "Answer" + + **Correct answer are A, B, D.** + +----------------------------------------------------------------------- + +**Fix or improve this documentation** + + - Search for an answer: + [CyVerse Learning Center](https://learning.cyverse.org){target=_blank} + - Send feedback: + +------------------------------------------------------------------------ + +[:material-rocket: Learning Center Home](http://learning.cyverse.org/) diff --git a/step4/index.html b/step4/index.html new file mode 100644 index 0000000..81a676a --- /dev/null +++ b/step4/index.html @@ -0,0 +1,1291 @@ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + Data Management I - Cary Institute CyVerse Self-Guided Course + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +
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+ + + + + + + +
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+ + + + + + + +

Data Management I

+
+

Learning Objectives

+
    +
  • Create private directories in the Data Store using the Discovery Environment (DE) User Interface (UI)
  • +
  • Create, upload & download data from DE UI
  • +
  • Understand file permissions in the DE UI
  • +
  • Download data from the Data Store
  • +
+
+

Description:

+

In this module, we introduce the Data Store and its management in the Discovery Environment

+
+
+

+ +

+
+
+

Create a Directory in your personal account space

+

In your home create a folder named tutorial_folder by clicking on the folder with a + icon.

+

Inside that folder create two additional folders: raw_data/ and results/

+
+

Output/Results

+ + + + + + + + + + + + + +
OutputDescription
/tutorial folder/
tutorial_folder/raw_data
tutorial_folder/results
- We will cover in detail how to create and share folders in the next steps of the course.
- These will contain example data from future steps in the tutorial
+

Downloading data from the Discovery Environment

+
+Dropdown Menu +

The dropdown menu ( username)allows you to navigate between your home directory in the Data Store (i.e. your username), and other CyVerse data collections such as files shared with you (i.e. "Shared with Me"), and files shared by the CyVerse community (i.e. "Community Data"). You may also access files located in your "Trash" folder.

+
+
    +
  1. +

    If necessary, log into the Discovery Environment.

    +
  2. +
  3. +

    Click the Data Icon to browse your collection of files in the Data Store.

    +
  4. +
  5. +

    In the top left of the page, you should see your username with a dropdown arrow next to it; Click on your username, then click Community Data in the dropdown menu.

    +
  6. +
  7. +

    From the Community Data directory, scroll down until you find usda/ folder, and click on it. Then navigate to the /usda/usfs/r3/coconino/training_data/ folder, then mahan/, which contains the sample data.

    +
  8. +
+
+Access points for data in the Data Store +

Path to the iRODS data store via iCommands or GoCommands

+
/iplant/home/shared/usda/usfs/r3/coconino/training_data/mahan/
+
+

https://de.cyverse.org - Discovery Environment

+

https://de.cyverse.org/data/ds/iplant/home/shared/usda/usfs/r3/coconino/training_data/mahan

+

https://data.cyverse.org - WebDav Interface

+

https://data.cyverse.org/dav-anon/iplant/projects/usda/usfs/r3/coconino/training_data/mahan/

+
+
    +
  1. +

    Click (Select) the checkbox next to the ept2copc.json file to select it.

    +
  2. +
  3. +

    Click on the More Actions button on the upper right and select the Download option to download the file to your local computer.

    +
  4. +
  5. +

    Check your Downloads directory on your personal computer.

    +
  6. +
+
+Downloads in the browser +

We don't recommend downloading many (>10) files or large (>2GB) files directly from the Discovery Environment.

+

Because files transferred in this way make use of https:// protocols these are slower and more often subject to failure for larger data sets.

+

CyVerse Cyberduck Profile, GoCommands or iCommands (discussed below and in the next section) are recommended for these uses.

+
+

Uploading Files to the Data Store via Discovery Environment

+
    +
  1. +

    On your local computer, use any text editor to create a file called README.md. You may wish to save it in the same place you have the ept2copc.json file (i.e. your Desktop, Downloads Folder, etc.).

    +
  2. +
  3. +

    In the README.md file, add several pieces of information about the ept2copc.json file you just downloaded:

    +
  4. +
+

   Name of file: `ept2copc.json`
+   Type of file: `JSON` file containing PDAL pipeline scripts
+   Type of data: lidar .las or .laz
+
+Adding a simple README with this sort of information can quickly make your data more FAIR.

+
+Discovery Environment file +

Make sure you save this as a markdown text file (.md), other file formats (e.g. .docx) may not be rendered in the Discovery Environment's file editor.

+
+
    +
  1. +

    In the Discovery Environment, click the Data Icon to access your home folder; you can access this from the same dropdown menu where you previously selected Community Data.

    +
  2. +
  3. +

    Navigate to the tutorial_folder directory you created earlier.

    +
  4. +
  5. +

    Click the Upload icon in the upper right, then select Browse Local. Then navigate to your README.md file and select it.

    +
  6. +
  7. +

    It may take a moment, but your README.md file should now be + uploaded to your tutorial_folder on the Data Store; you may + need to refresh your web browser to see the update.

    +
  8. +
+
+

Output/Results

+ + + + + + + + + + + + + + + + + + + + +
LocationFileExample
On CyVerseREADME.mdView the example folder
On your Computerept2copc.json, README.md
+

Self Assessment Questions

+
+What do the letters in FAIR refer to? +

A Fixable, Assessable, Interpretable, Recyclable

+

B Fast Access In Repetition

+

C Findable, Accessible, Interoperable, Reusable

+

D Fixable, Automated, Intersectional, Reducible

+
+Answer +

The correct answer is C.

+
+
+
+True or False is FAIR data is the same as Open data? +
+Answer +

False. Open data must be free for use and distribution by anyone, whereas data can be limited in access while still being FAIR.

+

Likewise, Open data are not necessarily easily findable,interoperable, or reusable.

+
+
+
+Which of the following are NOT true of the process of making your data FAIR? +

A It will be the same regardless of discipline

+

B It may require some technical skills

+

C It can be easier with CyVerse

+

D It happens on a continuum, not a binary FAIR/not FAIR

+
+Answer +

The correct answer is A Making your data FAIR can vary widely by discipline.

+

For example, human health data may be subject to stricter security and more limited sharing, which must be accounted for when attempting to make data FAIR.

+
+
+
+True or False is adding a README file a quick way to make your data more FAIR? +
+Answer +

True, a README can provide quick access to metadata and is easily discovered within a given directory.

+
+
+
+

Fix or improve this documentation

+ +
+

Learning Center Home

+ + + + + + + + + + + + + + + + + + + + + + +
+
+ + + +
+ + + +
+ + + +
+
+
+
+ + + + + + + + + + \ No newline at end of file diff --git a/step4/step4.md b/step4/step4.md new file mode 100644 index 0000000..ae3a57f --- /dev/null +++ b/step4/step4.md @@ -0,0 +1,184 @@ +[de]: assets/de/logos/deIcon.svg +[home]: assets/de/menu_items/homeIcon.svg +[data]: assets/de/menu_items/dataIcon.svg +[apps]: assets/de/menu_items/appsIcon.svg +[analysis]: assets/de/menu_items/analysisIcon.svg +[shell]: assets/de/menu_items/webshellIcon.svg +[team]: assets/de/menu_items/teamsIcon.svg +[bank]: assets/de/menu_items/bank.svg +[help]: assets/de/menu_items/helpIcon.svg + +# Data Management I + +!!! tip "Learning Objectives" + + - Create private directories in the Data Store using the Discovery Environment (DE) User Interface (UI) + - Create, upload & download data from DE UI + - Understand file permissions in the DE UI + - Download data from the Data Store + + +**Description:** + +In this module, we introduce the Data Store and its management in the Discovery Environment + +--- + +>
+> +>
+ +------------------------------------------------------------------------ + +## Create a Directory in your personal account space + +In your :material-home: home create a folder named `tutorial_folder` by clicking on the :fontawesome-solid-folder-plus: folder with a + icon. + +Inside that folder create two additional folders: `raw_data/` and `results/` + +------------------------------------------------------------------------ + +**Output/Results** + +| Output | Description | +|--------|-------------| +| `/tutorial folder/`
`tutorial_folder/raw_data`
`tutorial_folder/results` | - We will cover in detail how to create and share folders in the next steps of the course.
- These will contain example data from future steps in the tutorial | + +## Downloading data from the Discovery Environment + +??? Tip "Dropdown Menu" + + The dropdown menu (:material-home: `username`)allows you to navigate between your home directory in the Data Store (i.e. your username), and other CyVerse data collections such as files shared with you (i.e. :material-folder-account: "Shared with Me"), and files shared by the CyVerse community (i.e.:octicons-people-16: "Community Data"). You may also access files located in your :fontawesome-solid-trash: "Trash" folder. + +1. If necessary, log into the [![][de]{width=25}](https://de.cyverse.org){target=_blank} [Discovery Environment](https://de.cyverse.org){target=_blank}. + +2. Click the [![][data]{width=25}](https://de.cyverse.org/data/){target=_blank} [Data Icon](https://de.cyverse.org/data){target=_blank} to browse your collection of files in the Data Store. + +3. In the top left of the page, you should see your username with a dropdown arrow next to it; Click on your username, then click Community Data in the dropdown menu. + +4. From the **Community Data** directory, scroll down until you find `usda/` folder, and click on it. Then navigate to the `/usda/usfs/r3/coconino/training_data/` folder, then `mahan/`, which contains the sample data. + +??? Info "Access points for data in the Data Store" + + Path to the iRODS data store via [`iCommands`](https://learning.cyverse.org/ds/icommands/){target=_blank} or [`GoCommands`](https://learning.cyverse.org/ds/gocommands/){target=_blank} + + ``` + /iplant/home/shared/usda/usfs/r3/coconino/training_data/mahan/ + ``` + + `https://de.cyverse.org` - Discovery Environment + + [https://de.cyverse.org/data/ds/iplant/home/shared/usda/usfs/r3/coconino/training_data/mahan](https://de.cyverse.org/data/ds/iplant/home/shared/usda/usfs/r3/coconino/training_data/mahan){target=_blank} + + `https://data.cyverse.org` - WebDav Interface + + [https://data.cyverse.org/dav-anon/iplant/projects/usda/usfs/r3/coconino/training_data/mahan/](https://data.cyverse.org/dav-anon/iplant/projects/usda/usfs/r3/coconino/training_data/mahan/){target=_blank} + +1. Click (Select) the checkbox next to the `ept2copc.json` file to select it. + +2. Click on the **More Actions** button on the upper right and select the **Download** option to download the file to your local computer. + +3. Check your Downloads directory on your personal computer. + +??? Tip "Downloads in the browser" + + We don't recommend downloading many (>10) files or large (>2GB) files directly from the Discovery Environment. + + Because files transferred in this way make use of `https://` protocols these are slower and more often subject to failure for larger data sets. + + [CyVerse Cyberduck Profile](https://learning.cyverse.org/ds/cyberduck/){target=_blank}, [GoCommands](https://learning.cyverse.org/ds/gocommands/){target=_blank} or [iCommands](https://docs.irods.org/master/icommands/user/){target=_blank} (discussed below and in the next section) are recommended for these uses. + +## Uploading Files to the Data Store via Discovery Environment + +1. On your local computer, use any text editor to create a file called `README.md`. You may wish to save it in the same place you have the `ept2copc.json` file (i.e. your Desktop, Downloads Folder, etc.). + +2. In the `README.md` file, add several pieces of information about the `ept2copc.json` file you just downloaded: + +``` + Name of file: `ept2copc.json` + Type of file: `JSON` file containing PDAL pipeline scripts + Type of data: lidar .las or .laz +``` +Adding a simple README with this sort of information can quickly make your data more [FAIR](https://www.go-fair.org/fair-principles/){target=_blank}. + +??? Note "Discovery Environment file" + + Make sure you save this as a markdown text file (`.md`), other file formats (e.g. `.docx`) may not be rendered in the Discovery Environment's file editor. + +3. In the Discovery Environment, click the [![][data]{width=25}](https://de.cyverse.org/data/){target=_blank} [Data Icon](https://de.cyverse.org/data){target=_blank} to access your home folder; you can access this from the same dropdown menu where you previously selected **Community Data**. + +4. Navigate to the `tutorial_folder` directory you created earlier. + +5. Click the **Upload** icon in the upper right, then select **Browse Local**. Then navigate to your `README.md` file and select it. + +6. It may take a moment, but your `README.md` file should now be + uploaded to your `tutorial_folder` on the Data Store; you may + need to refresh your web browser to see the update. + +------------------------------------------------------------------------ + +## Output/Results + +| Location | File | Example | +|--------|-------------|---------| +| On CyVerse | `README.md` | View the [example folder](https://datacommons.cyverse.org/browse/iplant/home/shared/usda/usfs/r3/coconino/training_data/mahan/){target=_blank} | +| On your Computer | `ept2copc.json`, `README.md` | || + +### Self Assessment Questions + +??? Question "What do the letters in **FAIR** refer to?" + + **A** Fixable, Assessable, Interpretable, Recyclable + + **B** Fast Access In Repetition + + **C** Findable, Accessible, Interoperable, Reusable + + **D** Fixable, Automated, Intersectional, Reducible + + ??? Success "Answer" + + The correct answer is **C**. + +??? Question "**True or False** is FAIR data is the same as Open data?" + + ??? Success "Answer" + + **False.** Open data must be free for use and distribution by anyone, whereas data can be limited in access while still being FAIR. + + Likewise, Open data are not necessarily easily findable,interoperable, or reusable. + + +??? Question "Which of the following are NOT true of the process of making your data FAIR?" + + **A** It will be the same regardless of discipline + + **B** It may require some technical skills + + **C** It can be easier with CyVerse + + **D** It happens on a continuum, not a binary FAIR/not FAIR + + ??? Success "Answer" + + The correct answer is **A** Making your data FAIR **can** vary widely by discipline. + + For example, human health data may be subject to stricter security and more limited sharing, which must be accounted for when attempting to make data FAIR. + +??? Question "**True or False** is adding a README file a quick way to make your data more FAIR?" + + ??? Success "Answer" + + **True**, a README can provide quick access to metadata and is easily discovered within a given directory. + +----------------------------------------------------------------------- + +**Fix or improve this documentation** + + - Search for an answer: + [CyVerse Learning Center](https://learning.cyverse.org){target=_blank} + - Send feedback: + +------------------------------------------------------------------------ + +[:material-rocket: Learning Center Home](http://learning.cyverse.org/) diff --git a/step5/index.html b/step5/index.html new file mode 100644 index 0000000..2072c1f --- /dev/null +++ b/step5/index.html @@ -0,0 +1,1226 @@ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + Data Management II - Cary Institute CyVerse Self-Guided Course + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +
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+ + + +
+ +
+ + + +
+
+ + + + + + + +

Data Management II

+
+

Learning Objectives

+
    +
  • Properly configure Cyberduck
  • +
  • Understand how Cyberduck works
  • +
  • Upload a dataset using Cyberduck to CyVerse
  • +
+
+

Description: In this module, we discuss how you can upload and download your dataset(s) in the Discovery Environment. This is done using Cyberduck, a 3rd party software that connects your local computer to the Data Store to enable drag-and-drop download and upload of data.

+
+
+ +
+
+

Input Data

+ + + + + + + + + + + + + + + + + + + + +
LocationFileExample
On CyVerseREADME.mdView the data in the Discovery Environment, or WebDav
On your Computerselect any file
+

Setting up Cyberduck

+
    +
  1. +

    Download and install CyberDuck for your operating system.

    +
  2. +
  3. +

    Download the CyVerse Cyberduck connection profile Double-click on the downloaded file (should be in your browser downloads)- this should open the now installed Cyberduck software.

    +
  4. +
  5. +

    In the Cyberduck configuration window, enter your CyVerse username in the field iPlant username.

    +
  6. +
  7. +

    Under Advanced Options ensure ‘Transfer Files’ option is set to ‘Open Multiple Connections’. Close this window - your entries will be automatically saved.

    +
  8. +
+
+

+

Username & multiple connections
+

+
+

Double-click on the Data Store bookmark in the window.

+
+

+

Set the bookmark
+

+
+

You should now be connected to the Data Store and viewing the contents of your home directory.

+
+

+

your home path is: /iplant/home/<username>
+

+
+

Upload data to the Data Store with CyberDuck

+
    +
  1. +

    Locate the raw_data folder inside your tutorial_folder in the Cyberduck display of your home + directory.

    +
  2. +
  3. +

    Upload the file DE_sample_plants.fas to the raw_data folder inside the tutorial_folder by dragging and droping.

    +
  4. +
  5. +

    Back in the Discovery Environment, click the (Data Icon) to access your home folder.

    +
  6. +
  7. +

    Navigate to the raw_data folder inside your tutorial_folder in your browser to verify the upload was successful.

    +
  8. +
+

Output/Results

+ + + + + + + + + + + + + + + +
LocationFileExample
On CyVerseREADME.mdView the example folder
+
+

Self Assessment Questions

+
+Why do you need Cyberduck? +

A To conveniently chat with CyVerse support

+

B To conveniently download and upload files from your local computer

+

C To conveniently create teams on the Discovery Environment

+

D To view apps and tools on the Discovery Environment

+
+Answer +

Correst answer is B.

+
+
+
+Which of these will you need to configure and access the datastore using Cyberduck? Select all that apply: +

A SSH access

+

B CyVerse account

+

C CyVerse Cyberduck connection profile

+

D Discovery Environment

+
+Answer +

Correct answer are B & C.

+

Download the CyVerse Cyberduck connection profile

+
+
+
+

Fix or improve this documentation

+ +
+

Learning Center Home

+ + + + + + + + + + + + + + + + + + + + + + +
+
+ + + +
+ + + +
+ + + +
+
+
+
+ + + + + + + + + + \ No newline at end of file diff --git a/step5/step5.md b/step5/step5.md new file mode 100644 index 0000000..4eaf234 --- /dev/null +++ b/step5/step5.md @@ -0,0 +1,124 @@ +# Data Management II + + +!!! Tip "Learning Objectives" + + - Properly configure Cyberduck + - Understand how Cyberduck works + - Upload a dataset using Cyberduck to CyVerse + +**Description:** In this module, we discuss how you can upload and download your dataset(s) in the Discovery Environment. This is done using Cyberduck, a 3rd party software that connects your local computer to the Data Store to enable drag-and-drop download and upload of data. + +--- +
+ +
+--- + +## Input Data + +| Location | File | Example | +|--------|-------------|---------| +| On CyVerse | `README.md` | View the data in the [Discovery Environment](https://de.cyverse.org/data/ds/iplant/home/shared/usda/usfs/r3/coconino/training_data/mahan){target=_blank}, or [WebDav](https://data.cyverse.org/dav-anon/iplant/projects/usda/usfs/r3/coconino/training_data/mahan/){target=_blank} | +| On your Computer | | select any file | | + +## Setting up Cyberduck + +[bookmark]: assets/cyberduck/cyberduck_bookmark.png +[config]: assets/cyberduck/cyberduck_config.png +[window]: assets/cyberduck/cyberduck_window.png + +1. Download and install [CyberDuck](https://cyberduck.io){target=_blank} for your operating system. + +2. Download the [CyVerse Cyberduck connection profile](https://cyverse.atlassian.net/wiki/download/attachments/241869843/CyVerseDataStore.cyberduckprofile?version=1&modificationDate=1568640173000&cacheVersion=1&api=v2) Double-click on the downloaded file (should be in your browser downloads)- this should open the now installed Cyberduck software. + +3. In the Cyberduck configuration window, enter your CyVerse username in the field `iPlant username`. + +4. Under **Advanced Options** ensure ‘Transfer Files’ option is set to ‘Open Multiple Connections’. Close this window - your entries will be automatically saved. + +
+ ![][config]{width=500} +
Username & multiple connections
+
+
+ +Double-click on the Data Store bookmark in the window. + +
+ ![][bookmark]{width=500} +
Set the bookmark
+
+
+ +You should now be connected to the Data Store and viewing the contents of your home directory. + +
+ ![][window]{width=500} +
your home path is: `/iplant/home/`
+
+
+ +## Upload data to the Data Store with CyberDuck + +1. Locate the `raw_data` folder inside your `tutorial_folder` in the Cyberduck display of your home + directory. + +2. Upload the file `DE_sample_plants.fas` to the `raw_data` folder inside the `tutorial_folder` by dragging and droping. + +3. Back in the Discovery Environment, click the (Data Icon) to access your home folder. + +4. Navigate to the `raw_data` folder inside your `tutorial_folder` in your browser to verify the upload was successful. + +## Output/Results + + +| Location | File | Example | +|--------|-------------|---------| +| On CyVerse | `README.md` | View the [example folder](https://datacommons.cyverse.org/browse/iplant/home/shared/usda/usfs/r3/coconino/training_data){target=_blank} | + +------------------------------------------------------------------------ + +## Self Assessment Questions + +??? Question "Why do you need Cyberduck?" + + **A** To conveniently chat with CyVerse support + + **B** To conveniently download and upload files from your local computer + + **C** To conveniently create teams on the Discovery Environment + + **D** To view apps and tools on the Discovery Environment + + ??? Success "Answer" + + Correst answer is **B**. + + +??? Question "Which of these will you need to configure and access the datastore using Cyberduck? Select all that apply:" + + **A** SSH access + + **B** CyVerse account + + **C** CyVerse Cyberduck connection profile + + **D** Discovery Environment + + ??? Success "Answer" + + Correct answer are **B & C**. + + Download the [CyVerse Cyberduck connection profile](https://cyverse.atlassian.net/wiki/download/attachments/241869843/CyVerseDataStore.cyberduckprofile?version=1&modificationDate=1568640173000&cacheVersion=1&api=v2) + +----------------------------------------------------------------------- + +**Fix or improve this documentation** + + - Search for an answer: + [CyVerse Learning Center](https://learning.cyverse.org){target=_blank} + - Send feedback: + +------------------------------------------------------------------------ + +[:material-rocket: Learning Center Home](http://learning.cyverse.org/) diff --git a/step6/index.html b/step6/index.html new file mode 100644 index 0000000..3c834bf --- /dev/null +++ b/step6/index.html @@ -0,0 +1,1277 @@ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + Data Management III - Cary Institute CyVerse Self-Guided Course + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +
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+
+ + + + + + + +

Data Management III

+
+

Learning Objectives

+
    +
  • Apply metadata in the Discovery Environment interface
  • +
  • Share data with other CyVerse users
  • +
+
+

Description:

+

In this module, we introduce how to apply metadata in the Discovery Environment and demonstrate how to share data with other CyVerse users.

+
+
+

+ +

+
+
+

Input Data:

+ + + + + + + + + + + + + + + +
LocationFilesExample
On CyVerseREADME.md ept2copc.jsonView the example folder
+
+

Editing Metadata on Single Files in the Discovery Environment

+
    +
  1. If necessary, log into the CyVerse .
  2. +
  3. Click the (Data Icon) to browse your collection of files in the CyVerse Data Store.
  4. +
  5. Navigate to the raw_data folder inside tutorial_folder and select (checkbox) the ept2copc.json file uploaded previously.
  6. +
  7. Under the More Actions menu, click on the Metadata choice.
  8. +
+

You will see existing metadata for the file/folder in the Attribute, Value, Unit (AVU) format.

+

Adding metadata

+
    +
  1. Click the "+ Add Metadata" button to add a new entry. Then follow the directions for editing metadata below.
  2. +
+

Editing or deleting metadata

+
    +
  1. Use the "pencil" icon to edit an existing entry or the "trash can" icon to delete an entry.
  2. +
  3. After you have made any edits or deletion, click 'Save' (on the top right of the screen) to save all entries and apply the metadata.
  4. +
+

Apply metadata on multiple files in the Discovery Environment

+

It is possible to add or edit metadata on multiple files in the Discovery Environment by uploading a spreadsheet with this metadata.

+

The spreadsheet can be designed to follow a metadata format or standard, or contain whatever metadata entries you want associated with a set of files. See the for more details.

+

Output/Results

+

Although the file itself has not been edited, viewing the metadata in the Discovery Environment lets you view all annotations you have made to the file. View with metadata applied (you will need to view the file in the Discovery Environment to view the associated metadata; select the file and click More Actions and then Metadata).

+

Data Sharing in the Discovery Environment

+
    +
  1. If necessary, log into the Discovery Environment.
  2. +
  3. Click the Data Icon to browse your collection of files in the CyVerse Data Store.
  4. +
  5. Navigate to the tutorial_folder/ created previously and select (checkbox) the folder. Click the Share button.
  6. +
  7. In the 'search for users' field search for the CyVerse user you wish to share with by searching for their username or email address.
  8. +
  9. Next, under 'Permissions' choose what permission you want to grant the person you are sharing this file with.
  10. +
  11. Once you are finished, click Done to begin sharing. The user will be notified that a file has been shared with them.
  12. +
+
+

See more on in the Data Store Guide.

+
+
+

Self Assessment Questions

+
+Use the README.md file from Data Management I and apply the metadata correctly to your file using the DE +
+Answer +

Click to see how it should look and compare your results; click the More Actions menu, then Metadata.

+
+
+
+Which of the following are true about metadata in the CyVerse Data Store? +

A Are structured in Attribute-Value-Unit in CyVerse

+

B Contain information about the corresponding data file

+

C Are discoverable in CyVerse through ElasticSearch

+

D Contain results of experiments

+
+Answer +

Correct answer are A, B, & C.

+
+
+
+Select the correct statement: Sharing of research data in CyVerse... +

A Will be sent to collaboration partners automatically

+

B Will transfer of ownership to a collaborator

+

C Enables cross-institutional collaboration

+

D Ensures that data stays in a single accessible location you control access to.

+
+Answer +

Correct answer are C & D.

+
+
+
+

Fix or improve this documentation

+ +
+

Learning Center Home

+ + + + + + + + + + + + + + + + + + + + + + +
+
+ + + +
+ + + +
+ + + +
+
+
+
+ + + + + + + + + + \ No newline at end of file diff --git a/step6/step6.md b/step6/step6.md new file mode 100644 index 0000000..38b46e0 --- /dev/null +++ b/step6/step6.md @@ -0,0 +1,125 @@ +[de]: assets/de/logos/deIcon.svg +[home]: assets/de/menu_items/homeIcon.svg +[data]: assets/de/menu_items/dataIcon.svg +[apps]: assets/de/menu_items/appsIcon.svg +[analysis]: assets/de/menu_items/analysisIcon.svg +[shell]: assets/de/menu_items/webshellIcon.svg +[team]: assets/de/menu_items/teamsIcon.svg +[bank]: assets/de/menu_items/bank.svg +[help]: assets/de/menu_items/helpIcon.svg + +# Data Management III + +!!! tip "Learning Objectives" + + - Apply metadata in the Discovery Environment interface + - Share data with other CyVerse users + +**Description:** + +In this module, we introduce how to apply metadata in the Discovery Environment and demonstrate how to share data with other CyVerse users. + +--- +>
+> +>
+ +------------------------------------------------------------------------ + +## Input Data: + +| Location | Files | Example | +|--------|-------------|---------| +| On CyVerse | `README.md` `ept2copc.json` | View the [example folder](https://data.cyverse.org/dav-anon/iplant/home/shared/usda/usfs/r3/coconino/training_data/mahan/){target=_blank} | + +--------------------------------------------------------------- + +## Editing Metadata on Single Files in the Discovery Environment + +1. If necessary, log into the CyVerse . +2. Click the (Data Icon) to browse your collection of files in the CyVerse Data Store. +3. Navigate to the `raw_data` folder inside `tutorial_folder` and select (checkbox) the `ept2copc.json` file uploaded previously. +4. Under the **More Actions** menu, click on the **Metadata** choice. + +You will see existing metadata for the file/folder in the Attribute, Value, Unit (AVU) format. + +### Adding metadata + +1. Click the "+ Add Metadata" button to add a new entry. Then follow the directions for editing metadata below. + +### Editing or deleting metadata + +1. Use the "pencil" icon to edit an existing entry or the "trash can" icon to delete an entry. +2. After you have made any edits or deletion, click 'Save' (on the top right of the screen) to save all entries and apply the metadata. + +### Apply metadata on multiple files in the Discovery Environment + +It is possible to add or edit metadata on multiple files in the Discovery Environment by uploading a spreadsheet with this metadata. + +The spreadsheet can be designed to follow a metadata format or standard, or contain whatever metadata entries you want associated with a set of files. See the for more details. + +## Output/Results + +Although the file itself has not been edited, viewing the metadata in the Discovery Environment lets you view all annotations you have made to the file. View with metadata applied (you will need to view the file in the Discovery Environment to view the associated metadata; select the file and click **More Actions** and then **Metadata**). + +## Data Sharing in the Discovery Environment + +1. If necessary, log into the [![][de]{width=25}](https://de.cyverse.org){target=_blank} [Discovery Environment](https://de.cyverse.org){target=_blank}. +2. Click the [![][data]{width=25}](https://de.cyverse.org/data/){target=_blank} [Data Icon](https://de.cyverse.org/data){target=_blank} to browse your collection of files in the CyVerse Data Store. +3. Navigate to the `tutorial_folder/` created previously and select (checkbox) the folder. Click the **Share** button. +4. In the 'search for users' field search for the CyVerse user you wish to share with by searching for their username or email address. +5. Next, under 'Permissions' choose what permission you want to grant the person you are sharing this file with. +6. Once you are finished, click Done to begin sharing. The user will be notified that a file has been shared with them. + +!!! Tip "See more on in the [Data Store Guide](https://learning.cyverse.org/ds/share/#share-a-filefolder-in-the-discovery-environment-with-another-cyverse-user-or-group){target=_blank}." + +------------------------------------------------------------------------ + +### Self Assessment Questions + +??? Question "Use the `README.md` file from [Data Management I](step4.md) and apply the metadata correctly to your file using the DE" + + ??? Success "Answer" + + Click to see how it should look and compare your results; click the **More Actions** menu, then **Metadata**. + +??? Question "Which of the following are true about metadata in the CyVerse Data Store?" + + **A** Are structured in Attribute-Value-Unit in CyVerse + + **B** Contain information about the corresponding data file + + **C** Are discoverable in CyVerse through ElasticSearch + + **D** Contain results of experiments + + ??? Success "Answer" + + Correct answer are **A, B, & C**. + + +??? Question "Select the correct statement: Sharing of research data in CyVerse..." + + **A** Will be sent to collaboration partners automatically + + **B** Will transfer of ownership to a collaborator + + **C** Enables cross-institutional collaboration + + **D** Ensures that data stays in a single accessible location you control access to. + + ??? Success "Answer" + + Correct answer are **C & D**. + +----------------------------------------------------------------------- + +**Fix or improve this documentation** + + - Search for an answer: + [CyVerse Learning Center](https://learning.cyverse.org){target=_blank} + - Send feedback: + +------------------------------------------------------------------------ + +[:material-rocket: Learning Center Home](http://learning.cyverse.org/) diff --git a/step7/index.html b/step7/index.html new file mode 100644 index 0000000..aa48903 --- /dev/null +++ b/step7/index.html @@ -0,0 +1,1233 @@ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + Executable Analysis - Cary Institute CyVerse Self-Guided Course + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +
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+
+ + + + + + + +

Analysis with the Discovery Environment

+
+

Learning Objectives

+
    +
  • +

    Understand basic analysis capabilities of the Discovery Environment

    +
  • +
  • +

    Find an app and launch an analysis

    +
  • +
  • +

    Monitor analysis results

    +
  • +
  • +

    Access analysis results

    +
  • +
+
+

Description:

+

In this module, we introduce executable analyses in the CyVerse Discovery Environment and demonstrate how to launch and view their output.

+
+

+ +

+
+
+

Input Data:

+ + + + + + + + + + + + + + + +
LocationFileExample
On CyVerseortho.tifView the example folder
+

Launch an Executable Analysis

+
    +
  1. +

    If necessary, log into the Discovery Environment.

    +
  2. +
  3. +

    Click the Data Icon and navigate to your tutorial_folder/; click the (Add Folder button) and create a new folder called gdal_output/ inside your tutorial_output folder.

    +
  4. +
  5. +

    Click Apps - Applications (including VICE interactive applications); You will begin in the Featured Apps section; Click on the application name in the search bar. Type "gdal" and hit Return. There should be an app with this name in the search results.

    +
  6. +
  7. +

    Under "Analysis Info", for Output Folder click Browse and navigate to and select the tutorial_folder/gdal_output created above. No other changes are needed at this step, but you may edit the analysis name or comments (optional)

    +
  8. +
  9. +

    Click "Next " or click on icon number "2" in the Advanced Settings (optional).. Set the "Minimum CPU Cores" to 8, and "Minimum Memory" to 64 GiB. Leave "Minimum Disk Space" open. Note: the "Select Maximums" cannot be changed - this tool can use up to 128 cores, which is the average size of our newer compute nodes in the Discovery Environment.

    +
  10. +
  11. +

    Under "Select input data" click Browse, then navigate to the raw_data/ folder in the tutorial_folder and select a valid geotiff .tif file.

    +
  12. +
  13. +

    Under the optional "Advanced Settings", make no changes. If required, some analyses may be launched with requests for more minimum Resource Requirements, but this may cause those analyses to sit longer in the submission queue until a node matching those minimum requirements becomes available; click Next.

    +
  14. +
  15. +

    Click Launch Analysis.

    +
  16. +
  17. +

    You will receive a notification and be redirected to the Analyses page.

    +
  18. +
  19. +

    When the analysis has the status Completed, you may click the folder icon next to the analysis name, to navigate to and browse the outputs for this analysis. You may need to refresh your web browser to see the updated status.

    +
  20. +
+
+

Setting minimums

+

As a general rule of thumb, the "Advanced Settings (optional)" tab can be passed over when starting an analysis. The Kubernetes scheduler provides everyone with at least 4 CPUs and 16 GiB of memory.

+

By asking for the "minimum" you're locking in that amount for your analysis. If the system is busy and there are many users on the VICE cluster, asking for an entire 128 CPU node may leave you in a queue, waiting minutes or hours for a free resource to become available.

+

Its a good rule of thumb, and a neighborly courtesy to other users not to ask for maximum CPU and RAM unless absolutely necessary.

+

More importantly, asking for larger minimums will result in a faster burn rate for your CPU hours, 1 allocation unit = 1 CPU core / hour.

+
+
+

Output/Results

+ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +
LocationFileExample
pdal_outputs/output folderView the example pdal_outputs/
ept2copc.jsonPDAL pipeline .jsonthe input for the app
mahan.copc.laz.laz format with COPC
mahan_dem.tif.tif file from GDAL
+
+

Self Assessment Questions

+
+Which of the following are true about Docker containers? +

A They share the host OS

+

B They have process-level isolation.

+

C They are are heavyweight.

+

D They have a startup time in the minutes range.

+
+Answer +

Correct answer are A & B.

+
+
+
+Which of the following are incorrect about Docker containers? +

A Dockerfiles are a recipe for creating Docker images.

+

B Docker containers are a collection of Dockerfiles.

+

C Docker images get built by running a Docker command which uses the Dockerfile.

+

D Docker containers are running instances of a Docker image.

+
+Answer +

The incorrect statement is B.

+
+
+
+

Fix or improve this documentation

+ +
+

Learning Center Home

+ + + + + + + + + + + + + + + + + + + + + + +
+
+ + + +
+ + + +
+ + + +
+
+
+
+ + + + + + + + + + \ No newline at end of file diff --git a/step7/step7.md b/step7/step7.md new file mode 100644 index 0000000..08ce3f5 --- /dev/null +++ b/step7/step7.md @@ -0,0 +1,119 @@ +# Analysis with the Discovery Environment + +!!! tip "Learning Objectives" + + - Understand basic analysis capabilities of the Discovery Environment + + - Find an app and launch an analysis + + - Monitor analysis results + + - Access analysis results + +**Description:** + +In this module, we introduce executable analyses in the CyVerse Discovery Environment and demonstrate how to launch and view their output. + +>
+> +>
+ +------------------------------------------------------------------------ + +### Input Data: + +| Location | File | Example | +|----------|------|---------| +| On CyVerse | `ortho.tif` | View the [example folder](https://data.cyverse.org/dav-anon/iplant/commons/cyverse_curated/Gillan_Ecosphere_2021/raster_products/Sept_2019/){target=_blank} | + +## Launch an Executable Analysis + +[de]: assets/de/logos/deIcon.svg +[home]: assets/de/menu_items/homeIcon.svg +[data]: assets/de/menu_items/dataIcon.svg +[apps]: assets/de/menu_items/appsIcon.svg +[analysis]: assets/de/menu_items/analysisIcon.svg + +1. If necessary, log into the [![][de]{width=25}](https://de.cyverse.org){target=_blank} [Discovery Environment](https://de.cyverse.org){target=_blank}. + +2. Click the [![][data]{width=25}](https://de.cyverse.org/data/){target=_blank} [Data Icon](https://de.cyverse.org/data){target=_blank} and navigate to your `tutorial_folder/`; click the (Add Folder button) and create a new folder called `gdal_output/` inside your `tutorial_output` folder. + +3. Click [![][apps]{width=20}](https://de.cyverse.org/apps){target=_blank} [Apps](https://de.cyverse.org/apps){target=_blank} - Applications (including VICE interactive applications); You will begin in the **Featured Apps** section; Click on the application name in the search bar. Type "`gdal`" and hit Return. There should be an app with this name in the search results. + +4. Under "Analysis Info", for **Output Folder** click **Browse** and navigate to and select the **tutorial_folder/gdal_output** created above. No other changes are needed at this step, but you may edit the analysis name or comments (optional) + +5. Click "Next :material-arrow-right:" or click on icon :material-numeric-2-circle: number "2" in the **Advanced Settings (optional).**. Set the "Minimum CPU Cores" to 8, and "Minimum Memory" to 64 GiB. Leave "Minimum Disk Space" open. Note: the "**Select Maximums**" cannot be changed - this tool can use up to 128 cores, which is the average size of our newer compute nodes in the Discovery Environment. +6. Under "Select input data" click Browse, then navigate to the `raw_data/` folder in the `tutorial_folder` and select a valid geotiff .tif file. + +7. Under the optional "Advanced Settings", make no changes. If required, some analyses may be launched with requests for more minimum Resource Requirements, but this may cause those analyses to sit longer in the submission queue until a node matching those minimum requirements becomes available; click **Next**. + +8. Click **Launch Analysis**. + +9. You will receive a notification and be redirected to the [![][analysis]{width=20}](https://de.cyverse.org/analyses){target=_blank} [Analyses](https://de.cyverse.org/analyses){target=_blank} page. + +10. When the analysis has the status **Completed**, you may click the folder icon next to the analysis name, to navigate to and browse the outputs for this analysis. You may need to refresh your web browser to see the updated status. + +!!! Danger "Setting minimums" + + As a general rule of thumb, the "**Advanced Settings (optional)**" tab can be passed over when starting an analysis. The Kubernetes scheduler provides everyone with at least 4 CPUs and 16 GiB of memory. + + By asking for the "minimum" you're locking in that amount for your analysis. If the system is busy and there are many users on the VICE cluster, asking for an entire 128 CPU node may leave you in a queue, waiting minutes or hours for a free resource to become available. + + Its a good rule of thumb, and a neighborly courtesy to other users not to ask for maximum CPU and RAM unless absolutely necessary. + + More importantly, asking for larger minimums will result in a faster burn rate for your CPU hours, 1 allocation unit = 1 CPU core / hour. + +------------------------------------------------------------------------ + +## Output/Results + +| Location | File | Example | +|----------|------|---------| +| `pdal_outputs/` | output folder | [View the example `pdal_outputs/`](https://data.cyverse.org/dav-anon/iplant/home/shared/usda/usfs/r3/coconino/training_data/mahan){target=_blank} | +| `ept2copc.json` | PDAL pipeline `.json` | the input for the app | +| `mahan.copc.laz` | `.laz` format with COPC | +| `mahan_dem.tif` | `.tif` file from GDAL | + +------------------------------------------------------------------------ + +### Self Assessment Questions + +??? Question "Which of the following are **true** about Docker containers?" + + **A** They share the host OS + + **B** They have process-level isolation. + + **C** They are are heavyweight. + + **D** They have a startup time in the minutes range. + + ??? Success "Answer" + + Correct answer are **A** & **B**. + +??? Question "Which of the following are incorrect about Docker containers?" + + **A** Dockerfiles are a recipe for creating Docker images. + + **B** Docker containers are a collection of Dockerfiles. + + **C** Docker images get built by running a Docker command which uses the Dockerfile. + + **D** Docker containers are running instances of a Docker image. + + ??? Success "Answer" + + The incorrect statement is **B**. + +----------------------------------------------------------------------- + +**Fix or improve this documentation** + + - Search for an answer: + [CyVerse Learning Center](https://learning.cyverse.org){target=_blank} + - Send feedback: + +------------------------------------------------------------------------ + +[:material-rocket: Learning Center Home](http://learning.cyverse.org/) diff --git a/step8/index.html b/step8/index.html new file mode 100644 index 0000000..8960fb2 --- /dev/null +++ b/step8/index.html @@ -0,0 +1,1319 @@ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + Interactive Analysis - Cary Institute CyVerse Self-Guided Course + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +
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+ + + + + + + +

Interactive Analyses

+
+

Learning Objectives

+
    +
  • Request VICE access.
  • +
  • Launch and access VICE application.
  • +
  • Configure the VICE application and run an analysis.
  • +
  • Save the outputs of a VICE application to your Data Store.
  • +
+
+

Description:

+

The Visual Interactive Computing Environment VICE allows you to work with popular interactive data science applications such JupyterLab, RStudio, Linux shell and others. In this exercise we will cover a simple introductory use case that allows us to complete our goal of visualizing a phylogenetic tree.

+

In this exercise we will:

+
    +
  1. +

    Launch an RStudio session, loading the sequence alignments created earlier in the course.

    +
  2. +
  3. +

    Install an R package and create a phylogenetic tree from the alignment, saving it to a file.

    +
  4. +
  5. +

    Save our work to the Data Store and terminate the application.

    +
  6. +
+
+Why use VICE +

The Discovery Environment excels at running compute intensive analyses non-interactively.

+

In other words, once you launch a job in the DE, you get an output, but to start a new analysis (for example to tweak parameters), you need to relaunch that job, and await new results.

+

This style of computing allows you to run large jobs that require lots of resources. However, several analyses we'd like to do are interactive -- we need to visualize and manipulate parameters on the fly -- for example, creating a figure where you need to see and adjust the results of an upstream analysis.

+

This kind of work is often done using tools like R and RStudio, or other programing tools such as Jupyter. Hence VICE!

+
+

There are a few common categories of featured interactive applications:

+
    +
  1. +

    Terminal Access

    +
      +
    • +

      Basic Ubuntu Terminal:

      +
    • +
    • +

      LANDIS-II Command Line Interface:

      +
    • +
    +
  2. +
  3. +

    Integrated Development Environments (IDE)

    +
      +
    • +
    • +
    • +
    +
  4. +
  5. +

    Web Server Applications

    +
      +
    • StreamlitApps, ShinyApps, WebGL, HTML5, etc.
    • +
    +
  6. +
  7. +

    Virtual Desktop Environments (e.g., Apache Guacamole, NoVNC, Kasm, Xpra)

    +
      +
    • +
    • +
    +
  8. +
+

CyVerse hosts the container recipes (Dockerfiles) of its featured apps on GitHub: https://github.com/cyverse-vice/.

+

These images are maintained by CyVerse staff.

+
+
+ +
+ +
+

Getting VICE Access

+

To minimize inappropriate use, VICE is a restricted service, currently accessible from CyVerse US. You must request access to use.

+
    +
  1. Visit the User Portal and Services; look for DE VICE and select the REQUST ACCESS link.
  2. +
+
+Ensure your request is approved +

Ensure that your CyVerse account is associated with a valid email address from an organization ending with .org, an educational institution with .edu, or government .gov.

+

We do not grant access to commercial email addresses, e.g., @gmail.com @yahoo.com @msn.com etc.

+
+

Launching a VICE application

+
+Featured Apps +

+

CyVerse maintains featured apps from the Rocker-Project, Project Jupyter, and Visual Studio Code

+
+

These containers are built from community maintianed container stacks, with a few additonal packages for use in CyVerse DE.

+
    +
  1. +

    If necessary, log into the Discovery Environment.

    +
  2. +
  3. +

    Click the Data Icon and navigate to your results/ folder in thetutorial_folder/; click the (Add Folder button) and create a folder called rocker_output/ inside your tutorial folder.

    +
  4. +
  5. +

    Use this Quick Launch link or click on Apps to launch thev featured Rocker RStudio Latest App. You can also use the DE search bar to search for this application in the Apps category.

    +
  6. +
  7. +

    Launch the application and adjust the following:

    +

    Under "Analysis Info", for Output Folder click Browse and navigate to and select the rocker_output created above. click Next;

    +

    For "Parameters", under "Input Folder" click Browse and navigate to the tutorial_folder, then the results folder and select the muscle_output folder where your Muscle analysis results should be located; click Select Current Folder; then Next;

    +

    Click Next to skip Advanced Settings;

    +

    Click Launch Analysis to launch your application

    +
  8. +
  9. +

    In the navigation, click on the (Analyses) view. Your application will be listed as "Submitted" for a few minutes (usually just a few, but more depending on both the size of the application software and any imported datasets).

    +
  10. +
  11. +

    When the Status of the launch is Running, click on the (link out icon); a new tab where your VICE application will run should open in your browser.

    +
  12. +
+
+Launching VICE Apps +

Even when the application has entered 'Running' status, you may still have to wait some additional time for input data to be transferred onto the resource with the new container.

+
+

Completing our analysis in RStudio

+

Once you have your RStudio session, it will behave the same as a RStudio session running on your local Desktop.

+

Some potential benefits of running RStudio in VICE include more processing power (especially if you choose additional resources at launch -- see the Advanced Settings).

+

Since this session is running on CyVerse hardware, transferring large data will also happen at increased speed. To complete our analyses, we will install the ape package and compute a phylogenetic tree.

+
+Using RStudio +

While you don't need to be an expert R user to complete this section, familiarity with R will help since we won't be going into specific detail about this example.

+
+
+Locating your files in RStudio +

The data we loaded at launch of the VICE application will be in the /home/rstudio/work/data/input directory.

+
+

From the R console, enter the following commands:

+

BASH script.sh
# Create COG with gdal_translate
+gdal_translate https://data.cyverse.org/dav-anon/iplant/home/tswetnam/jemez/suas/Jemez_drone_Oct2020/7Springs/7springs_CHM.tif 7springs_CHM.cog.tif \
+-b 1 \
+-of COG \
+-co TILING_SCHEME=GoogleMapsCompatible \
+-co OVERVIEW_QUALITY=100 \
+-co COMPRESS=JPEG \
+-co QUALITY=100
+
+# add overviews
+gdaladdo \
+--config COMPRESS_OVERVIEW JPEG \
+--config JPEG_QUALITY_OVERVIEW 100 \
+--config PHOTOMETRIC_OVERVIEW YCBCR \
+--config INTERLEAVE_OVERVIEW PIXEL \
+-r average \
+7springs_CHM.cog.tif \
+2 4 8 16
+
+larger file: https://data.cyverse.org/dav-anon/iplant/home/tswetnam/jemez/suas/Jemez_drone_Oct2020/7Springs/7springs_ortho.tif (if you use this file, set up 3 bands -b 1 -b 2 -b 3)

+

You can now visualize the resulting canopy height model or ortho mosaic in your RStudio

+

Terminating your VICE session and saving work to the Data Store

+

Once you have completed your work, you can save your work to the Data Store and terminate your VICE application.

+
+Extending Analysis Time +

VICE applications typically have a 48-hour run time.

+

Unless you request an extension, your application will only save data in the ~/data-store/data/outputs folder to your analyses/ folder when it terminates.

+

It is recommended that you save your work to the Data Store before time expires.

+
+
    +
  1. +

    In the Analyses pane of the Discovery Environment, select your unning RStudio VICE application.

    +
  2. +
  3. +

    Under More Actions, select Terminate; confirm Termination on the pop-up notice.

    +
  4. +
  5. +

    When the VICE application has the status completed, click the folder icon to view the folder on your data store where results will be written. It may take time for all outputs to be saved depending on the size of the data generated.

    +
  6. +
+
+Transfering your data +

You don't have to terminate your analyses to save your work to the Data Store.

+

From within the RStudio environment using the terminal, you can use goCommands to transfer data (See Data Store Guide on goCommands).

+

RStudio does allow you to download files and plots directly back to your local computer. Use the "Export" features present in the file pane.

+
+
+

Output/Results

+ + + + + + + + + + + + + +
OutputDescription
tree.newickA Newick-formatted phylogenetic tree file which can visualized using your choice of tools.
+
+

Self Assessment Questions

+
+What kind of applications are supported in VICE? +

A Applications with their own graphical interface

+

B Open-source applications

+

C Applications that have interactive visualizations

+

D All of the above

+
+Answer +

Correct answer is D

+
+
+
+Which of the following are restrictions on using VICE? +

A You must request access on the CyVerse user portal

+

B VICE applications have a 48-hour runtime limit

+

C You must install VICE applications yourself

+

D A and B

+

E C only

+
+Answer +

Correct answer is D, you must request separate access to use VICE.

+

There is a default 48-hour run time but you can extend your time by requesting this in the Analysis view for the launched application.

+
+
+
+

Fix or improve this documentation

+ +
+

Learning Center Home

+ + + + + + + + + + + + + + + + + + + + + + +
+
+ + + +
+ + + +
+ + + +
+
+
+
+ + + + + + + + + + \ No newline at end of file diff --git a/step8/step8.md b/step8/step8.md new file mode 100644 index 0000000..f976707 --- /dev/null +++ b/step8/step8.md @@ -0,0 +1,240 @@ +[de]: assets/de/logos/deIcon.svg +[home]: assets/de/menu_items/homeIcon.svg +[data]: assets/de/menu_items/dataIcon.svg +[apps]: assets/de/menu_items/appsIcon.svg +[analysis]: assets/de/menu_items/analysisIcon.svg +[vice]: assets/de/logos/deviceIcon.png + +# Interactive Analyses + +!!! tip "Learning Objectives" + + - Request VICE access. + - Launch and access VICE application. + - Configure the VICE application and run an analysis. + - Save the outputs of a VICE application to your Data Store. + +**Description:** + +The Visual Interactive Computing Environment [![][vice]{width=30}](https://user.cyverse.org/services){target=_blank} [VICE](https://user.cyverse.org/services){target=_blank} allows you to work with popular interactive data science applications such JupyterLab, RStudio, Linux shell and others. In this exercise we will cover a simple introductory use case that allows us to complete our goal of visualizing a phylogenetic tree. + +*In this exercise we will:* + +1. Launch an RStudio session, loading the sequence alignments created earlier in the course. + +2. Install an R package and create a phylogenetic tree from the alignment, saving it to a file. + +3. Save our work to the Data Store and terminate the application. + +??? tip "Why use VICE" + + The Discovery Environment excels at running compute intensive analyses non-interactively. + + In other words, once you launch a job in the DE, you get an output, but to start a new analysis (for example to tweak parameters), you need to relaunch that job, and await new results. + + This style of computing allows you to run large jobs that require lots of resources. However, several analyses we'd like to do are interactive -- we need to visualize and manipulate parameters on the fly -- for example, creating a figure where you need to see and adjust the results of an upstream analysis. + + This kind of work is often done using tools like R and RStudio, or other programing tools such as Jupyter. Hence VICE! + +There are a few common categories of featured interactive applications: + +1. Terminal Access + - Basic Ubuntu Terminal: + + - LANDIS-II Command Line Interface: + +2. Integrated Development Environments (IDE) + - + - + - + +3. Web Server Applications + + - StreamlitApps, ShinyApps, WebGL, HTML5, etc. + +4. Virtual Desktop Environments (e.g., Apache Guacamole, NoVNC, Kasm, Xpra) + - + - + +CyVerse hosts the container recipes (Dockerfiles) of its featured apps on :material-github: GitHub: . + +These images are maintained by CyVerse staff. + +--- + +
+ +
+ +------------------------------------------------------------------------ + +## Getting VICE Access + +To minimize inappropriate use, VICE is a restricted service, currently accessible from CyVerse US. You must request access to use. + +1. Visit the [User Portal](https://user.cyverse.org/services){target=_blank} and **Services**; look for [![][vice]{width=30}](https://user.cyverse.org/services){target=_blank} [DE VICE](https://user.cyverse.org/services){target=_blank} and select the **REQUST ACCESS** link. + +??? tip "Ensure your request is approved" + + Ensure that your CyVerse account is associated with a valid email address from an organization ending with `.org`, an educational institution with `.edu`, or government `.gov`. + + We do not grant access to commercial email addresses, e.g., `@gmail.com` `@yahoo.com` `@msn.com` etc. + +## Launching a VICE application + +??? tip "Featured Apps" + + [![][vice]{width=60}](https://de.cyverse.org/apps){target=_blank} + + CyVerse maintains featured apps from the [Rocker-Project](https://rocker-project/images){target=_blank}, [Project Jupyter](https://jupyter-docker-stacks.readthedocs.io/en/latest/index.html){target=_blank}, and [Visual Studio Code](https://code.visualstudio.com/docs/remote/create-dev-container){target=_blank} + +These containers are built from community maintianed container stacks, with a few additonal packages for use in CyVerse DE. + +1. If necessary, log into the [![][de]{width=25}](https://de.cyverse.org){target=_blank} [Discovery Environment](https://de.cyverse.org){target=_blank}. + +2. Click the [![][data]{width=25}](https://de.cyverse.org/data/){target=_blank} [Data Icon](https://de.cyverse.org/data){target=_blank} and navigate to your `results/` folder in the` tutorial_folder/`; click the (Add Folder button) and create a folder called `rocker_output/` inside your tutorial folder. + +3. Use this Quick Launch link or click on [![][apps]{width=20}](https://de.cyverse.org/apps){target=_blank} [Apps](https://de.cyverse.org/apps){target=_blank} to launch thev featured **Rocker RStudio Latest** App. You can also use the DE search bar to search for this application in the Apps category. + +4. Launch the application and adjust the following: + + Under "Analysis Info", for **Output Folder** click **Browse** and navigate to and select the `rocker_output` created above. click **Next**; + + For "Parameters", under "Input Folder" click **Browse** and navigate to the `tutorial_folder`, then the **results** folder and select the `muscle_output` folder where your Muscle analysis results should be located; click **Select Current Folder**; then **Next**; + + Click **Next** to skip Advanced Settings; + + Click **Launch Analysis** to launch your application + +5. In the navigation, click on the (Analyses) view. Your application will be listed as "Submitted" for a few minutes (usually just a few, but more depending on both the size of the application software and any imported datasets). + +6. When the Status of the launch is Running, click on the (link out icon); a new tab where your VICE application will run should open in your browser. + +??? tip "Launching VICE Apps" + + Even when the application has entered 'Running' status, you may still have to wait some additional time for input data to be transferred onto the resource with the new container. + +## Completing our analysis in RStudio + +Once you have your RStudio session, it will behave the same as a RStudio session running on your local Desktop. + +Some potential benefits of running RStudio in VICE include more processing power (especially if you choose additional resources at launch -- see the Advanced Settings). + +Since this session is running on CyVerse hardware, transferring large data will also happen at increased speed. To complete our analyses, we will install the [`ape` package](https://cran.r-project.org/web/packages/ape/index.html){target=_blank} and compute a phylogenetic tree. + +??? tip "Using RStudio" + + While you don't need to be an expert R user to complete this section, familiarity with R will help since we won't be going into specific detail about this example. + +??? tip "Locating your files in RStudio" + + The data we loaded at launch of the VICE application will be in the `/home/rstudio/work/data/input` directory. + +From the R console, enter the following commands: + +``` {sh title="BASH script.sh"} +# Create COG with gdal_translate +gdal_translate https://data.cyverse.org/dav-anon/iplant/home/tswetnam/jemez/suas/Jemez_drone_Oct2020/7Springs/7springs_CHM.tif 7springs_CHM.cog.tif \ +-b 1 \ +-of COG \ +-co TILING_SCHEME=GoogleMapsCompatible \ +-co OVERVIEW_QUALITY=100 \ +-co COMPRESS=JPEG \ +-co QUALITY=100 + +# add overviews +gdaladdo \ +--config COMPRESS_OVERVIEW JPEG \ +--config JPEG_QUALITY_OVERVIEW 100 \ +--config PHOTOMETRIC_OVERVIEW YCBCR \ +--config INTERLEAVE_OVERVIEW PIXEL \ +-r average \ +7springs_CHM.cog.tif \ +2 4 8 16 +``` +larger file: https://data.cyverse.org/dav-anon/iplant/home/tswetnam/jemez/suas/Jemez_drone_Oct2020/7Springs/7springs_ortho.tif (if you use this file, set up 3 bands `-b 1 -b 2 -b 3`) + +You can now visualize the resulting canopy height model or ortho mosaic in your RStudio + +## Terminating your VICE session and saving work to the Data Store + +Once you have completed your work, you can save your work to the Data Store and terminate your VICE application. + +??? tip "Extending Analysis Time" + + VICE applications typically have a 48-hour run time. + + Unless you request an extension, your application will only save data in the `~/data-store/data/outputs` folder to your `analyses/` folder when it terminates. + + It is recommended that you save your work to the Data Store before time expires. + +1. In the Analyses pane of the Discovery Environment, select your unning RStudio VICE application. + +2. Under **More Actions**, select **Terminate**; confirm Termination on the pop-up notice. + +3. When the VICE application has the status completed, click the folder icon to view the folder on your data store where results will be written. It may take time for all outputs to be saved depending on the size of the data generated. + +??? tip "Transfering your data" + + You don't have to terminate your analyses to save your work to the Data Store. + + From within the RStudio environment using the terminal, you can use goCommands to transfer data (See [Data Store Guide on goCommands](https://learning.cyverse.org/ds/gocommands/){target=_blank}). + + RStudio does allow you to download files and plots directly back to your local computer. Use the "Export" features present in the file pane. + +------------------------------------------------------------------------ + +**Output/Results** + +| Output | Description | +|--------|-------------| +| `tree.newick` | A Newick-formatted phylogenetic tree file which can visualized using your choice of tools. | | + +------------------------------------------------------------------------ + +## Self Assessment Questions + +??? question "What kind of applications are supported in VICE?" + + **A** Applications with their own graphical interface + + **B** Open-source applications + + **C** Applications that have interactive visualizations + + **D** All of the above + + ??? Success "Answer" + + Correct answer is **D** + + +??? question "Which of the following are restrictions on using VICE?" + + **A** You must request access on the CyVerse user portal + + **B** VICE applications have a 48-hour runtime limit + + **C** You must install VICE applications yourself + + **D** A and B + + **E** C only + + ??? Success "Answer" + + Correct answer is **D**, you must request separate access to use VICE. + + There is a default 48-hour run time but you can extend your time by requesting this in the Analysis view for the launched application. + +----------------------------------------------------------------------- + +**Fix or improve this documentation** + + - Search for an answer: + [CyVerse Learning Center](https://learning.cyverse.org){target=_blank} + - Send feedback: + +------------------------------------------------------------------------ + +[:material-rocket: Learning Center Home](http://learning.cyverse.org/) diff --git a/stylesheets/extra.css b/stylesheets/extra.css new file mode 100644 index 0000000..0c03a65 --- /dev/null +++ b/stylesheets/extra.css @@ -0,0 +1,5 @@ +[data-md-color-scheme="cary-day"] { + --md-primary-fg-color: #005838; + --md-primary-fg-color--light: #ffd51d; + --md-primary-fg-color--dark: #6a5147; + }

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