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Different conservation result for the protein P17931 #152

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FlorenceChu opened this issue Dec 20, 2024 · 1 comment
Open

Different conservation result for the protein P17931 #152

FlorenceChu opened this issue Dec 20, 2024 · 1 comment

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@FlorenceChu
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Describe the bug
when i use the conservation_hmm_based.py to calculate the ic of protein P17931, the results of the residues whose value are -1000 in prankweb, are not negative but some normal value.

To Reproduce
command:
python conservation_hmm_based.py AF-P17931-F1-model_v4.fasta /hmmer-3.3.2/uniref50.fasta . AF-P17931-F1-model_v4.txt

Expected behavior
residue1-116 should be -1000.00 (in the prankweb)
image

Screenshots
the result i got:
image
@skodapetr
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@FlorenceChu Can you please specify which version/branch are you using to run the script?

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@skodapetr @FlorenceChu