From f07e6fde764a8c86a0eab494bd921306f85e19e5 Mon Sep 17 00:00:00 2001 From: Rasmus Kronberg Date: Tue, 26 Mar 2024 13:28:00 +0200 Subject: [PATCH] Use Puhti web interface as Allas GUI --- part-1/allas/allas-bio-data.md | 19 +++++++++---------- part-1/allas/allas-usage.md | 4 ++-- 2 files changed, 11 insertions(+), 12 deletions(-) diff --git a/part-1/allas/allas-bio-data.md b/part-1/allas/allas-bio-data.md index 78eef96f..ed2cef29 100644 --- a/part-1/allas/allas-bio-data.md +++ b/part-1/allas/allas-bio-data.md @@ -12,15 +12,14 @@ permalink: /hands-on/allas/allas-tutorial.html # Using Allas in CSC's HPC environment - Before the actual exercise, open a view to the Allas service in your browser using the cPouta web interface. + Before the actual exercise, open a view to the Allas service in your browser using the Puhti web interface. -1. Go to and login with your account -2. From the upper left corner open the project selection pop-up menu - - If you have several projects available, choose one that you want to use in this exercise -3. From the menu on the left side of the interface, select `Object Store > Containers` -4. During the exercise, you can use this web interface to get another view to the buckets and objects in Allas - -> Note that you need to **reload** the view in order to see changes +1. Go to and login with your account. +2. Configure an Allas S3 connection using the _Cloud storage configuration_ tool. + - You need to first authenticate by providing your CSC password. + - If you have several projects available, choose one that you want to use in this exercise. +3. Once you've configured a connection, select `s3allas-project_` from the _Files_ dropdown menu in the top navigation bar. Replace `` with the number of the project you chose to use (e.g. 2001234). +4. During the exercise, you can use this web interface to get another view to the buckets and objects in Allas. ## 1. Login to Puhti @@ -104,8 +103,8 @@ rclone lsf allas:$USER-genomes-rc/ ``` {:style="counter-reset:step-counter 2"} -3. Check how this looks like in the Pouta web interface. Open a browser and go to -4. In the Pouta web interface, go to the _Object Store_ section and list the buckets (which are called here _Containers_) +3. Check how this looks like in the Puhti web interface. Open a browser and go to +4. In the Puhti web interface, go to the _Files_ app and select `s3allas-project_` to list the buckets of your project (replace `` as needed). 5. Locate your own `$USER-genomes-rc` bucket and download one of the uploaded fasta files to your local computer 💡 You can read more about moving files at Docs CSC: [Copying files using scp](https://docs.csc.fi/data/moving/scp/) and [Moving data with rclone](https://docs.csc.fi/support/faq/how-to-move-data-between-puhti-and-allas/#move-data-with-rclone) diff --git a/part-1/allas/allas-usage.md b/part-1/allas/allas-usage.md index 8b3b5b56..225568d4 100644 --- a/part-1/allas/allas-usage.md +++ b/part-1/allas/allas-usage.md @@ -22,9 +22,9 @@ permalink: /hands-on/allas/tutorial_allas-file-transfer.html 💡 Now you'll be able to browse your _buckets_ and _objects_ in Allas using the *Files* app! {:style="counter-reset:step-counter 4"} -1. From the *Files* dropdown menu in the top navigation bar, select `s3allas-project_`. +1. From the *Files* dropdown menu in the top navigation bar, select `s3allas-project_` where `` is the number of your project (e.g. 2001234). 2. Create a new bucket by pressing the *New Directory* button. - - Name it as `_`, in which `` is the number of your project (e.g. 2001234) and `` is your CSC username. Note that you cannot use a bucket name that already exists! + - Name it as `_`, in which `` is again the number of your project and `` is your CSC username. Note that you cannot use a bucket name that already exists! 3. Open the created bucket by clicking it. 4. Upload one file from your computer into the bucket (any file should do, but prefer a file that you can open in Puhti, e.g. a text file).