NAMESPACE

# Generated by roxygen2: do not edit by hand

export("adj_data<-")
export("expr_data<-")
export("interactions_data<-")
export("mod_colors<-")
export("sample_annotation<-")
export(adj_data)
export(cemitool)
export(diagnostic_report)
export(expr_data)
export(filter_genes)
export(find_modules)
export(fit_data)
export(generate_report)
export(get_adj)
export(get_beta_data)
export(get_cemitool_r2_beta)
export(get_connectivity)
export(get_hubs)
export(get_merged_mods)
export(get_mods)
export(get_phi)
export(gsea_data)
export(interactions_data)
export(mod_colors)
export(mod_gene_num)
export(mod_gsea)
export(mod_names)
export(mod_ora)
export(mod_summary)
export(module_genes)
export(new_cem)
export(nmodules)
export(ora_data)
export(plot_beta_r2)
export(plot_gsea)
export(plot_hist)
export(plot_interactions)
export(plot_mean_k)
export(plot_mean_var)
export(plot_ora)
export(plot_profile)
export(plot_qq)
export(plot_sample_tree)
export(read_gmt)
export(sample_annotation)
export(save_plots)
export(select_genes)
export(show_plot)
export(write_files)
exportMethods(find_modules)
exportMethods(get_beta_data)
exportMethods(get_phi)
exportMethods(interactions_data)
exportMethods(show)
import(WGCNA)
import(dplyr)
import(ggdendro)
import(ggplot2)
import(ggpmisc)
import(ggthemes)
import(grid)
import(gtable)
import(htmltools)
import(intergraph)
import(knitr)
import(stringr)
importFrom(DT,datatable)
importFrom(clusterProfiler,enricher)
importFrom(data.table,data.table)
importFrom(data.table,dcast)
importFrom(data.table,fread)
importFrom(data.table,melt)
importFrom(data.table,setDF)
importFrom(data.table,setnames)
importFrom(fastcluster,hclust)
importFrom(fgsea,fgsea)
importFrom(ggrepel,geom_label_repel)
importFrom(grDevices,colorRampPalette)
importFrom(grDevices,pdf)
importFrom(grDevices,rainbow)
importFrom(gridExtra,arrangeGrob)
importFrom(igraph,degree)
importFrom(igraph,graph_from_data_frame)
importFrom(igraph,set_vertex_attr)
importFrom(matrixStats,rowMeans2)
importFrom(matrixStats,rowVars)
importFrom(methods,'slot<-')
importFrom(methods,new)
importFrom(methods,show)
importFrom(network,as.matrix.network.adjacency)
importFrom(network,as.matrix.network.edgelist)
importFrom(network,get.vertex.attribute)
importFrom(pracma,gammainc)
importFrom(rmarkdown,render)
importFrom(scales,squish)
importFrom(sna,gplot.layout.fruchtermanreingold)
importFrom(utils,write.table)