DESCRIPTION

Package: screenCounter
Version: 1.5.1
Date: 2024-08-10
Title: Counting Reads in High-Throughput Sequencing Screens
Description: Provides functions for counting reads from high-throughput
    sequencing screen data (e.g., CRISPR, shRNA) to quantify barcode 
    abundance. Currently supports single barcodes in single- or paired-end
    data, and combinatorial barcodes in paired-end data.
Authors@R: person("Aaron", "Lun", role=c("aut", "cre"), email="infinite.monkeys.with.keyboards@gmail.com", comment = c(ORCID = "0000-0002-3564-4813"))
Depends: 
    S4Vectors, 
    SummarizedExperiment
Imports: 
    Rcpp,
    zlibbioc,
    BiocParallel
Suggests: 
    BiocGenerics,
    Biostrings,
    BiocStyle,
    knitr,
    rmarkdown,
    testthat
LinkingTo: 
    Rcpp
License: MIT + file LICENSE
VignetteBuilder: knitr
SystemRequirements: C++17, GNU make
BugReports: https://github.com/crisprVerse/screenCounter/issues
URL: https://github.com/crisprVerse/screenCounter
RoxygenNote: 7.2.3
biocViews:
    CRISPR,
    Alignment,
    FunctionalGenomics,
    FunctionalPrediction