Merge pull request #37 from converged-computing/add-mpitrace-ubuntu

container: mpitrace with ubuntu jammy base

mpitrace/Dockerfile

@@ -0,0 +1,93 @@
+FROM spack/ubuntu-jammy:latest AS builder
+
+# docker build -t ghcr.io/converged-computing/metric-mpitrace:ubuntu-jammy .
+
+# Usage (for testing)
+# cd /opt/intel/mpi/2021.8.0/test
+# mpicc -o test-program test.c
+# export LD_PRELOAD=/opt/views/view/lib/libmpitrace.so
+# mpirun --np 4 ./test-program
+# unset LD_PRELOAD
+# This will generate mpi_profiles!
+
+# See https://github.com/IBM/mpitrace
+RUN mkdir /opt/spack-environment \
+&&  (echo spack: \
+&&   echo '  specs: [binutils, papi, libiberty]' \
+&&   echo '  view: /opt/views/view' \
+&&   echo '  concretizer:' \
+&&   echo '    unify: true' \
+&&   echo '  packages:' \
+&&   echo '    all:' \
+&&   echo '      require: ["target=:x86_64"]' \
+&&   echo '  config:' \
+&&   echo '    install_tree: /opt/software') > /opt/spack-environment/spack.yaml
+
+WORKDIR /opt
+RUN apt-get update && apt-get install -y wget build-essential autoconf libtool libibverbs-dev librdmacm-dev && apt-get clean && \ 
+    git clone -b v1.21.1 https://github.com/ofiwg/libfabric.git /opt/libfabric && \
+    cd /opt/libfabric && ./autogen.sh && \
+    ./configure --enable-efa=yes --enable-tcp=yes --enable-udp=yes --enable-sockets=yes --enable-verbs=yes --enable-shm=yes --enable-mrail=yes --enable-rxd=yes --enable-rxm=yes && \
+    make -j 4 && make install
+
+RUN wget https://download.open-mpi.org/release/open-mpi/v4.1/openmpi-4.1.2.tar.gz && \
+    tar -xzvf openmpi-4.1.2.tar.gz && \
+    cd openmpi-4.1.2 && \
+    ./configure --with-ofi=/usr/local && \
+    make -j 4 && make install && ldconfig
+
+# Install the software, remove unnecessary deps
+RUN cd /opt/spack-environment && spack env activate . && spack install --fail-fast && spack gc -y
+
+# Strip all the binaries
+RUN find -L /opt/views/view/* -type f -exec readlink -f '{}' \; | \
+    xargs file -i | \
+    grep 'charset=binary' | \
+    grep 'x-executable\|x-archive\|x-sharedlib' | \
+    awk -F: '{print $1}' | xargs strip
+
+# Modifications to the environment that are necessary to run
+RUN cd /opt/spack-environment && \
+    spack env activate --sh -d . > activate.sh
+
+# Modifications to the environment that are necessary to run
+RUN echo ". /opt/intel/mpi/latest/env/vars.sh" >> /etc/profile.d/z10_intel_environment.sh
+WORKDIR /opt/
+
+# Build mpitrace isolated to view
+RUN cd /opt/spack-environment && \
+    spack env activate . && \
+    git clone https://github.com/IBM/mpitrace && \
+    cd mpitrace/src && \
+    LIBERTY_PATH=$(spack find --format "{prefix}" libiberty) && \
+    PAPI_PATH=$(spack find --format "{prefix}" papi) && \
+    BINUTILS_PATH=$(spack find --format "{prefix}" binutils) && \
+    LD_LIBRARY_PATH=$LIBERTY_PATH/lib64 ./configure --with-vprof --with-binutils=${BINUTILS_PATH}:${LIBERTY_PATH}/lib64 && \
+    make libmpitrace.so
+
+# Note that I can't get papi to build -it is not happy with binutils
+# testing for libbdf.a...libbfd.a not found ... check your binutils path ... exiting
+# LD_LIBRARY_PATH=$LIBERTY_PATH/lib64 ./configure --with-vprof --with-papi=$PAPI_PATH/include --with-binutils=${BINUTILS_PATH}:${LIBERTY_PATH}/lib64 && \
+
+# Move to the spack view
+RUN cp /opt/spack-environment/mpitrace/src/libmpitrace.so /opt/views/view/lib/
+
+# Bare OS image to run the installed executables
+FROM rockylinux:8
+
+COPY --from=builder /opt/spack-environment /opt/spack-environment
+COPY --from=builder /opt/software /opt/software
+
+# paths.view is a symlink, so copy the parent to avoid dereferencing and duplicating it
+COPY --from=builder /opt/views /opt/views
+
+RUN { \
+      echo '#!/bin/sh' \
+      && echo '.' /opt/spack-environment/activate.sh \
+      && echo 'exec "$@"'; \
+    } > /entrypoint.sh \
+&& chmod a+x /entrypoint.sh \
+&& ln -s /opt/views/view /opt/view
+
+ENTRYPOINT [ "/entrypoint.sh" ]
+CMD [ "/bin/bash" ]