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VARSCAN and SAMTools_mpileup CWL tool. #79

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ambarishK opened this issue May 13, 2020 · 0 comments
Open

VARSCAN and SAMTools_mpileup CWL tool. #79

ambarishK opened this issue May 13, 2020 · 0 comments

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@ambarishK
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Sir,

I have to write CWL script for variant calling using VARSCAN and samtools separately. I do not find VARSCAN as well as samtools_mpileup into the cwl tool repository.

How to form CWL script using them?
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added WDL2CWL conversion examples ambarishK/bio-cwl-tools
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@ambarishK