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classify_cells breaks with igraph 2.1.0 #69

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const-ae opened this issue Nov 6, 2024 · 0 comments

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bug

const-ae commented Nov 6, 2024

The classify_cells function calls the outnei function from igraph (https://github.com/cole-trapnell-lab/garnett/blob/master/R/classify_cells.R#L237). In the latest version of igraph (2.1.1) this function is removed (after being deprecated in version 1.3.3).

To fix the issue, it should be sufficient to replace all instances of outnei() with .outnei().

The text was updated successfully, but these errors were encountered:

const-ae added the bug label

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