error with run_cicero function

[lucyu2668]

when I run the function: conns<-run_cicero(cicero_cds,chromosome_length)
R returen as:
[1] "Starting Cicero"
[1] "Calculating distance_parameter value"
Error: logical subscript contains NAs
In addition: Warning messages:
1: In estimate_distance_parameter(cds, window = window, maxit = 100, :
NAs introduced by coercion
2: In estimate_distance_parameter(cds, window = window, maxit = 100, :
NAs introduced by coercion

What does this mean? How can I fix the problem?

[hpliner]

Apologies for the long delay. Are your accessible sites in the format 'chr_bp1_bp2'? Please provide the head of your input matrix if this is still a function - the output to head(fData(cicero_cds))