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Version 5 on figshare was based on b054721, which predates the cognoma/genes integration.
Version 6 on figshare, which I just uploaded, is based on the current repository (1d961fb).
So hopefully if you update to version 6 the issues will be fixed. Sorry about that -- my bad with not updating the figshare.
@vasudevanv, this is the sort of mistake that continuous deposition would solve -- basically any time the cancer-data code is updated the datasets are regenerated and uploaded to figshare. Not that this is worth the time to implement, but it's the way of the future.
See cognoma/core-service#42 (comment), where @stephenshank has discovered a gene with an invalid
entrez_gene_id
inmutation-matrix.tsv.bz2
from https://doi.org/10.6084/m9.figshare.3487685.v5.The gene is
117153
, which is not included ingenes.tsv
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