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ChapterVALET.bib
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ChapterVALET.bib
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@article{gurevich2013quast,
title={{QUAST}: quality assessment tool for genome assemblies},
author={Gurevich, Alexey and Saveliev, Vladislav and Vyahhi, Nikolay and Tesler, Glenn},
journal={Bioinformatics},
volume={29},
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@article{barthelson2011plantagora,
title={Plantagora: modeling whole genome sequencing and assembly of plant genomes},
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publisher={Public Library of Science}
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title={Genomic mapping by fingerprinting random clones: a mathematical analysis},
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}
@article{mcgill1978variations,
title={Variations of box plots},
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@article{marccais2011fast,
title={A fast, lock-free approach for efficient parallel counting of occurrences of k-mers},
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journal={Bioinformatics},
volume={27},
number={6},
pages={764--770},
year={2011},
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@article{patro2014sailfish,
title={Sailfish enables alignment-free isoform quantification from {RNA-seq} reads using lightweight algorithms},
author={Patro, Rob and Mount, Stephen M and Kingsford, Carl},
journal={Nature biotechnology},
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}
@article{shakya2013comparative,
title={Comparative metagenomic and rRNA microbial diversity characterization using archaeal and bacterial synthetic communities},
author={Shakya, Migun and Quince, Christopher and Campbell, James H and Yang, Zamin K and Schadt, Christopher W and Podar, Mircea},
journal={Environmental microbiology},
volume={15},
number={6},
pages={1882--1899},
year={2013},
publisher={Wiley Online Library}
}
@article{haider2014omega,
title={{Omega}: an Overlap-graph de novo Assembler for Metagenomics},
author={Haider, Bahlul and Ahn, Tae-Hyuk and Bushnell, Brian and Chai, Juanjuan and Copeland, Alex and Pan, Chongle},
journal={Bioinformatics},
pages={btu395},
year={2014},
publisher={Oxford Univ Press}
}
@article{li2015megahit,
title={{MEGAHIT}: an ultra-fast single-node solution for large and complex metagenomics assembly via succinct de Bruijn graph},
author={Li, Dinghua and Liu, Chi-Man and Luo, Ruibang and Sadakane, Kunihiko and Lam, Tak-Wah},
journal={Bioinformatics},
pages={btv033},
year={2015},
publisher={Oxford Univ Press}
}
@article{thorvaldsdottir2012integrative,
title={Integrative Genomics Viewer ({IGV}): high-performance genomics data visualization and exploration},
author={Thorvaldsd{\'o}ttir, Helga and Robinson, James T and Mesirov, Jill P},
journal={Briefings in bioinformatics},
pages={bbs017},
year={2012},
publisher={Oxford Univ Press}
}