reference_binaryFillHolesSliceBySlice.md

binaryFillHolesSliceBySlice

Fills holes (pixels with value 0 surrounded by pixels with value 1) in a binary image stack slice by slice.

Categories: Filter, Binary

Availability: Available in Fiji by activating the update sites clij and clij2. This function is part of clijx_-0.32.0.1.jar.

Usage in ImageJ macro

Ext.CLIJx_binaryFillHolesSliceBySlice(Image source, Image destination);

Usage in object oriented programming languages

Java

// init CLIJ and GPU
import net.haesleinhuepf.clijx.CLIJx;
import net.haesleinhuepf.clij.clearcl.ClearCLBuffer;
CLIJx clijx = CLIJx.getInstance();
// get input parameters
ClearCLBuffer source = clijx.push(sourceImagePlus);
destination = clijx.create(source);

// Execute operation on GPU
clijx.binaryFillHolesSliceBySlice(source, destination);

// show result
destinationImagePlus = clijx.pull(destination);
destinationImagePlus.show();

// cleanup memory on GPU
clijx.release(source);
clijx.release(destination);

Matlab

% init CLIJ and GPU
clijx = init_clatlabx();
% get input parameters
source = clijx.pushMat(source_matrix);
destination = clijx.create(source);

% Execute operation on GPU
clijx.binaryFillHolesSliceBySlice(source, destination);

% show result
destination = clijx.pullMat(destination)

% cleanup memory on GPU
clijx.release(source);
clijx.release(destination);

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