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Error: your read pool doesnot contain any read #30

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ank1211 opened this issue Oct 13, 2017 · 0 comments
Open

Error: your read pool doesnot contain any read #30

ank1211 opened this issue Oct 13, 2017 · 0 comments

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@ank1211
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ank1211 commented Oct 13, 2017

In reference to Mitobim "direct reconstruction without prior mapping assembly using the --quick option"
i am running this module without using the mira assembler file, when running on -quick mode mira bait
is generating a file for mapped reads in first iteration as "bait_match_samplename.fastq" however mitobim looks for file named as " $strainname-readpool-it0" for first round for findings reads which has matched to bait. Because of this file name mismatch "Mitobim is exiting with error "your read pool doesnot contain any read".
the mira version i am using is 4.9.5_2 & mitobim version i am using is 1.9.
Please help
Thank you
Ankita

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