diff --git a/.github/workflows/compatibility_tests.yml b/.github/workflows/compatibility_tests.yml index 0302b6543..72edc0465 100644 --- a/.github/workflows/compatibility_tests.yml +++ b/.github/workflows/compatibility_tests.yml @@ -7,6 +7,10 @@ on: branches: - main + # For debug - uncomment below to run on all PRs + # pull_request: + # branches: "*" + env: JEST_ENV: prod @@ -14,9 +18,9 @@ jobs: docker-build: runs-on: ubuntu-latest steps: - - uses: actions/checkout@v3 + - uses: actions/checkout@v4 - name: Set up Python ${{ matrix.python-version }} - uses: actions/setup-python@v4 + uses: actions/setup-python@v5 with: python-version: ${{ matrix.python-version }} - name: Build docker image @@ -35,7 +39,7 @@ jobs: # add anndata pinned version test for subset of matrix configurations, # in order to reduce matrix cross-product explosion include: - - python-version: 3.10 + - python-version: 3.11 cellxgene_build: latest # TODO: dynamically use the literal version in requirements.txt, # to avoid having to update this in manually in the future @@ -43,9 +47,9 @@ jobs: # matches this pinned version, to avoid a redundant test anndata_version: "==0.10.9" steps: - - uses: actions/checkout@v3 + - uses: actions/checkout@v4 - name: Set up Python ${{ matrix.python-version }} - uses: actions/setup-python@v4 + uses: actions/setup-python@v5 with: python-version: ${{ matrix.python-version }} - name: Cache env vars @@ -55,14 +59,14 @@ jobs: run: echo "BREW_CACHE=`brew --cache`" >> $GITHUB_ENV # FIXME: Only working for Linux - name: Python cache - uses: actions/cache@v2 + uses: actions/cache@v4 with: path: ${{ env.PIP_CACHE }} key: ${{ runner.os }}-pip-${{ hashFiles('**/requirements*.txt') }} restore-keys: | ${{ runner.os }}-pip- - name: Node cache - uses: actions/cache@v1 + uses: actions/cache@v4 with: path: ~/.npm key: ${{ runner.os }}-node-${{ hashFiles('**/package-lock.json') }} @@ -70,7 +74,7 @@ jobs: ${{ runner.os }}-node- - name: Brew cache (MacOS) if: startsWith(matrix.os, 'macos') - uses: actions/cache@v1 + uses: actions/cache@v4 with: path: ${{ env.BREW_CACHE }} key: ${{ runner.os }}-brew- diff --git a/.github/workflows/push_tests.yml b/.github/workflows/push_tests.yml index 6696bb2e9..5de6038b1 100644 --- a/.github/workflows/push_tests.yml +++ b/.github/workflows/push_tests.yml @@ -14,15 +14,15 @@ jobs: lint: runs-on: ubuntu-latest steps: - - uses: actions/checkout@v2 + - uses: actions/checkout@v4 - run: | git fetch --depth=1 origin +${{github.base_ref}} - - name: Set up Python 3.9 - uses: actions/setup-python@v4 + - name: Set up Python 3.11 + uses: actions/setup-python@v5 with: - python-version: 3.9 + python-version: 3.11 - name: Node cache - uses: actions/cache@v1 + uses: actions/cache@v4 with: path: ~/.npm key: ${{ runner.os }}-node-${{ hashFiles('**/package-lock.json') }} @@ -45,22 +45,22 @@ jobs: unit-test: runs-on: ubuntu-latest steps: - - uses: actions/checkout@v2 - - name: Set up Python 3.9 (pyenv) # pyenv needed for mlflow in cli annotate tests + - uses: actions/checkout@v4 + - name: Set up Python 3.11 (pyenv) # pyenv needed for mlflow in cli annotate tests uses: gabrielfalcao/pyenv-action@v9 with: - default: 3.9 + default: 3.11 command: pip install -U pip # upgrade pip after installing python - run: pip install virtualenv # virtualenv needed for mlflow in cli annotate tests - name: Python cache - uses: actions/cache@v1 + uses: actions/cache@v4 with: path: ~/.cache/pip key: ${{ runner.os }}-pip-${{ hashFiles('**/requirements*.txt') }} restore-keys: | ${{ runner.os }}-pip- - name: Node cache - uses: actions/cache@v1 + uses: actions/cache@v4 with: path: ~/.npm key: ${{ runner.os }}-node-${{ hashFiles('**/package-lock.json') }} @@ -78,20 +78,20 @@ jobs: runs-on: macos-latest timeout-minutes: 20 steps: - - uses: actions/checkout@v2 - - name: Set up Python 3.9 - uses: actions/setup-python@v4 + - uses: actions/checkout@v4 + - name: Set up Python 3.11 + uses: actions/setup-python@v5 with: - python-version: 3.9 + python-version: 3.11 - name: Python cache - uses: actions/cache@v1 + uses: actions/cache@v4 with: path: ~/.cache/pip key: ${{ runner.os }}-pip-${{ hashFiles('**/requirements*.txt') }} restore-keys: | ${{ runner.os }}-pip- - name: Node cache - uses: actions/cache@v1 + uses: actions/cache@v4 with: path: ~/.npm key: ${{ runner.os }}-node-${{ hashFiles('**/package-lock.json') }} diff --git a/client/package-lock.json b/client/package-lock.json index 670410118..e4af241db 100644 --- a/client/package-lock.json +++ b/client/package-lock.json @@ -109,7 +109,7 @@ "rimraf": "^3.0.2", "serve-favicon": "^2.5.0", "terser-webpack-plugin": "^5.1.1", - 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